Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A13 F56 I15 R1
|
126 |
117.1 |
3948514 |
95.2% |
3758985 |
126.3 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
CP006881 |
3,831,557 |
G→A |
intergenic (‑6/+90) |
U712_19755 ← / ← U712_19760 |
Transcription antiterminator LicT/Uncharacterized protein yxiP |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | CP006881 | 3,831,557 | 0 | G | A | 98.3%
| 420.9
/ ‑2.1
| 119 | intergenic (‑6/+90) | U712_19755/U712_19760 | Transcription antiterminator LicT/Uncharacterized protein yxiP |
| Reads supporting (aligned to +/- strand): ref base G (1/1); new base A (56/60); total (57/62) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.52e-01 |
Only 100 of 119 total aligned reads displayed.
TGCGGGCTTCATCGACATCATCGCCGGACTTTTTCTGAAACGCGAGCCCCCTGCCCATGACGACCAATTCTTTCCCCTGTTCATTGACCACGCTGATCACATTATTGTTGATCACCTTCGCAATTTTCATGGCATGTCCCTCCAAATCTACTAAGAACAGACTATATCTTGATTGTACATTCTTTTTGTACTAGGTCAATATCATCAGGGAAAGACGGAAGCTGGTCAGTACAATTCACTCCGTACCTGCTGCCCGGGCTGTTTTT > CP006881/3831422‑3831687
|
tGCGGGCTTCATCGACATCATCGCCGGACTTTTTCTGAAACGCGAGCCCCCTGCCCATGACGACCAATTCTTTCCCCTGTTCATTGACCACGCTGATCACATTATTGTTGATCACCTTCGCAATTTTCATGGCATATcc > 2:417485/1‑139 (MQ=255)
tGCGGGCTTCATCGACATCATCGCCGGACTTTTTCTGAAACGCGAGCCCCCTGCCCATGACGACCAATTCTTTCCCCTGTTCATTGACCACGCTGATCACATTATTGTTGATCACCTTCGCAATTTTCATGGCATATcc > 8:167931/1‑139 (MQ=255)
cTTCATCGACATCATCGCCGGACTTTTTCTGAAACGCGAGCCCCCTGCCCAGGACGACCAATTCTTTCCCCAGTTCATTGACCACGCTGATCACATTATTGTTGATCACCTTCGCAATTTTCATGGCATATCCCTCCaa < 4:279551/139‑1 (MQ=255)
cATCGACATCATCGCCGTACTTTTTCTGAAACGCGAGCCCCCTGCACATGACGACCAATTCTTTCCACTGTTCATTGACCACGCTGATCACATTATTGTTGATCACCTTCGCAATTTTCATGGCATATCCCTCCAAAt < 1:68022/138‑1 (MQ=255)
cATCGACATCATCGCCGGACTTTTTCTGAAACGCGAGCCCCCTGCCCATGACGACCAATTCTTTCCCCTGTTCATTGACCACGCTGATCACATTATTGTTGATCACCTTCGCAATTTTCATGGCATATCCCTCCAAAt < 7:157078/138‑1 (MQ=255)
cATCGACATCATCGCCGGACTTTTTCTGAAACGCGAGCCCCCTGCCCATGACGACCAATTCTTTCCCCTGTTCATTGACCACGCTGATCACATTATTGTTGATCACCTTCGCAATTTTCATGGCATATCCCTCCAAAt < 6:139604/138‑1 (MQ=255)
gACATCATCGCCGGACTTTTTCTGAAACGCGAGCCCCCTGCCCATGACGACCAATTCTTTCCCCTGTTCATTGACCACGCTGATCACATTATTTTTGATCACCTTCGCAATTTTCATGGCATATCCCTCCAAATctact < 3:148059/139‑1 (MQ=255)
gACATCATCGCCGGACTTTTTCTGAAACGCGAGCCCCCTGCCCATGACGACCAATTCTTTCCCCTGTTCATTGACCACGCTGATCACATTATTGTTGATCACCTTCGCAATTTTCATGGCATATCCCTCCAAATctact < 7:252765/139‑1 (MQ=255)
gACATCATCGCCGGACTTTTTCTGAAACGCGAGCCCCCTGCCCATGACGACCAATTCTTTCCCCTGTTCATTGACCACGCTGATCACATTATTGTTGATCACCTTCGCAATTTTCATGGCATATCCCTCCAAATctact < 1:464206/139‑1 (MQ=255)
gACATCATCGCCGGACTTTTTCTGAAACGCGAGCCCCCTGCCCATGACGACCAATTCTTTCCCCTGTTCATTGACCACGCTGATCACATTATTGTTGATCACCTTCGCAATTTTCATGGCATATCCCTCCAAATctact < 8:28090/139‑1 (MQ=255)
catcGCCGGACTTTTTCTGAAACGCGAGCCCCCTGCCCATGACGACCAATTCTTTCCCCTGTTCATTGACCACGCTGATCACATTATTGTTGATCACCTTCGCAATTTTCATGGCATATCCCTCCAAATCTACTAAGaa < 2:358227/139‑1 (MQ=255)
atcGCCGGACTTTTTCTGAAACGCGAGCCCCCTGCCCATGACGACCAATTCTTTCCCCTGTTCATTGACCACGCTGATCACATTATTGTTGATCACCTTCGCAATTTTCATGGCATATCCCTCCAAATCTACTAAGaa < 8:397184/138‑1 (MQ=255)
atcGCCGGACTTTTTCTGAAACGCGAGCCCCCTGCCCATGACGACCAATTCTTTCCCCTGTTCATTGACCACGCTGATCACATTATTGTTGATCACCTTCGCAATTTTCATGGCATATCCCTCCAAATCTACTAAGaa < 3:147542/138‑1 (MQ=255)
atcGCCGGACTTTTTCTGAAACGCGAGCCCCCTGCCCATGACGACCAATTCTTTCCCCTGTTCATTGACCACGCTGATCACATTATTGTTGATCACCTTCGCAATTTTCATGGCATATCCCTCCAAATCTACTAAGaa < 5:378026/138‑1 (MQ=255)
atcGCCGGACTTTTTCTGAAACGCGAGCCCCCTGCCCATGACGACCAATTCTTTCCCCTGTTCATTGACCACGCTGATCACATTATTGTTGATCACCTTCGCAATTTTCATGGCATATCCCTCCAAATCTACTAAGaa < 7:415847/138‑1 (MQ=255)
atcGCCGGACTTTTTCTGAAACGCGAGCCCCCTGCCCATGACGACCAATTCTTTCCCCTGTTCATTGACCACGCTGATCACATTATTGTTGATCACCTTCGCAATTTTCATGGCATATCCCTCCAAATCTACTAAGAAc < 6:13919/139‑1 (MQ=255)
atcGCCGGACTTTTTCTGAAACGCGAGCCCCCTGCCCATGACGACCAATTCTTTCCCCTGTTCATTGACCACGCTGATCACATTATTGTTGATCACCTTCGCAATTTTCATGGCATATCCCTCCAAATCTACTAAGAAc < 7:71977/139‑1 (MQ=255)
atcGCCGGACTTTTTCTGAAACGCGAGCCCCCTGCCCATGACGACCAATTCTTTCCCCTGTTCATTGACCACGCTGATCACATTATTGTTGAGCACCTTCGCAATTTTCATGGCATATCCCTCCAAATCTACTAAGaa < 7:37245/138‑1 (MQ=255)
atcGCCGGACTTTTTCTGAAACGAGAGCCCCCTGCCCATGACGACCAATTCTTTCCCCTGTTCATTGACCACGCTGATCACATTATTGTTGATCACCTTCGCAATTTTCATGGCATATCCCTCCAAATCTACTAAGaa < 4:77889/138‑1 (MQ=255)
gCCGGACTTTTTCTGAAACGCGAGCCCCCTGCCCATGACGACCAATTCTTTCCCCTGTTCATTGACCACGCTGATCACATTATTGTTGATCACCTTCGCAATTTTCATGGCATATCCCTCCAAATCTACTAAGAACAg < 7:267170/138‑1 (MQ=255)
ccGGACTTTTTCTGAAACGCGAGCCCCCTGGCCATGACGACCAATTCTTTCCCCTGTTCATTGACCACGCTGATCACATTATTGTTGATCACCTTCGCAATTTTCATGGCATATCCCTCCAAATCTACTAAGAACAGAc < 5:65973/139‑1 (MQ=255)
ccGGACTTTTTCTGAAACGCGAGCCCCCTGCCCATGACGACCAATTCTTTCCCCTGTTCATTGACCACGCTGATCACATTATTGTTGATCACCTTCGCAATTTTCATGGCATATCCCTCCAAATCTACTAAGAACAGAc < 3:290079/139‑1 (MQ=255)
ccGGACTTTTTCTGAAACGCGAGCCCCCTGCCCATGACGACCAATTCTTTCCCCTGTTCATTGACCACGCTGATCACATTATTGTTGATCACCTTCGCAATTTTCATGGCATATCCCTCCAAATCTACTAAGAACAGAc < 5:353076/139‑1 (MQ=255)
cTTTTTCTGAAACGCGAGCCCCCTGCCCATGACGACCAATTCTTTCCCCTGTTCATTGACCACGCTGATCACATTATTGTTGATCACCTTCGCAATTTTCATGGCATATCCCTCCAAATCTACTAAGAACAGACTatat < 6:191090/139‑1 (MQ=255)
tttCTGAAACGCGAGCCCCCTGCCCATGACGACCAATTCTTTCCCCTGTTCATTGACCACGCTGATCACATTATTGTTGATCACCTTCGCAATTTTCATGGCATATCCCTCCAAATCTACTAAGAACAGACTATATCt < 1:417485/138‑1 (MQ=255)
cTGAAACGCGAGCCCCCTGCCCATGACGACCAATTCTTTCCCCTGTTCATTGACCACGCTGATCACATTATTGTTGATCACCTTCGCAATTTTCATGGCATATCCCTCCAAATCTACTAAGAACAGACTATATCTTGa < 6:492408/138‑1 (MQ=255)
aaCGCGAGCCCCCTGCCCATGACGACCAATTCTTTCCCCTGTTCATTGACCACGCTGATCACATTATTGTTGATCACCTTCGCAATTTTCATGGCATATCCCTCCAAATCTACTAAGAACAGACTATATCTTGATTGTa < 6:316938/139‑1 (MQ=255)
gcgAGCCCCCTGCCCATGACGACCAATTCTTTCCCCTGTTCATTGACCACGCTGATCACATTATTGTTGATCACCTTCGCAATTTTCATGGCATATCCCTCCAAATCTACTAAGAACAGACTATATCTTGATTGTACAt < 8:42461/139‑1 (MQ=255)
gcgAGCCCCCTGCCCATGACGACCAATTCTTTCCCCTGTTCATTGACCACGCTGATCACATTATTGTTGATCACCTTCGCAATTTTCATGGCATATCCCTCCAAATCTACTAAGAACAGACTATATCTTGATTGTACAt < 3:331160/139‑1 (MQ=255)
tGCCCATGACGACCAATTCTTTCCCCTGTTCATTGACCACGCTGATCACATTATTGTTGATCACCTTCGCAATTTTCATGGCATATCCCTCCAAATCTACTAAGAAc > 1:261799/1‑107 (MQ=255)
tGCCCATGACGACCAATTCTTTCCCCTGTTCATTGACCACGCTGATCACATTATTGTTGATCACCTTCGCAATTTTCATGGCATATCCCTCCAAATCTACTAAGAAc < 2:261799/107‑1 (MQ=255)
cccATGACGACCAATTCTTTCCCCTGTTCATTGACCATGCTGATCACATTATTGTTGATCACCTTCGCAATTTTCATGGCATATCCCTCCAAATCTACTAAGAACAGACTATATCTTGATTGTACATTCTTTTTGTAc < 8:456725/138‑1 (MQ=255)
tGACGACCAATTCTTTACCCTGTTAATTGACCACGCTGATCACATTATTTTTGATAACCTTCGCAATTTTCATGGCATATCCCTCCAAATATACTAATCACAGACTATATCTTGATTGTACATTCTTTTTGTACTAGGt > 1:274115/1‑139 (MQ=255)
acgacCAATTCTTTCCCCTGTTCATTGACCCCGCTGATCACATTATTGTTGATCACCTTCGCAATTTTCATGGCATATCCCTCCAAATCTACTAAGAACACACTATATCTTGATTGTACATTATTTTTGTACTAGGTc > 3:394669/1‑138 (MQ=255)
acgacCAATTCTTTCCCCTGTTCATTGACCACGCTGATCACATTATTGTTGATCACCTTCGCAATTTTCATGGCATATCCCTCCAAATCTACTAAGAACAGACTATATCTTGATTGTACATTCTTTTTGTACTAGGTc > 6:448465/1‑138 (MQ=255)
ccAATTCTTTCCCCTGTTCATTGACCACGCTGATCACATTATTGTTGATCACCTTCGCAATTTTCATGGCATATCCCTCCAAATCTACTAAGAACAGACTATATCTTGATTGTACATTCTTTTTGTACTAGGTCAatat > 7:37432/1‑139 (MQ=255)
ccAATTCTTTCCCCTGTTCATTGACCACGCTGATCACATTATTGTTGATCACCTTCGCAATTTTCATGGCATATCCCTCCAAATCTACTAAGAACAGACTATATCTTGATTGTACATTCTTTTTGTACTAGGTCAata > 7:462868/1‑138 (MQ=255)
aTTCTTTCCCCTGTTCATTGACCACGCTGATCACATTATTGTTGATCACCTTCGCAATTTTCATGGCATATCCCTCCAAATCTACTAAGAACAGACTATATCTTGATTGTACATTCTTTTTGTACTAGGTCAATatcat < 7:167931/139‑1 (MQ=255)
aTTCTTTCCCCTGTTCATTGACCACGCTGATCACATTATTGTTGATCACCTTCGCAATTTTCATGGCATATCCCTCCAAATCTACTAAGAACAGACTATATCTTGATTGTACATTCTTTTTGTACTAGGTCAATatcat > 8:31712/1‑139 (MQ=255)
tCCCCTGTTCATTGACCACGCTGATCACATTATTGTTGATCACCTTCGCAATTTTCATGGCATATCCCTCCAAATCTACTAAGAACAGACTATATCTTGATTGTACATTCTTTTTGTACTAGGTCAATATCATCAggg > 1:183621/1‑138 (MQ=255)
tGTTCATTGACCACGCTGATCACATTATTGTTGATCACCTTCGCAATTTTCATGGCATATCCCTCCAAATCTACTAAGAACAGACTATATCTTGATTGTACATTCTTTTTGTACTAGGTCAATATCATCAGGGAAAGAc > 3:220604/1‑139 (MQ=255)
gTTCATTGACCACGCTGATCACATTATTGTTGATCACCTTCGCAATTTTCATGGCATATCCCTCCAAATCTACTAAGAACAGACTATATCTTGa > 3:108234/1‑94 (MQ=255)
gTTCATTGACCACGCTGATCACATTATTGTTGATCACCTTCGCAATTTTCATGGCATATCCCTCCAAATCTACTAAGAACAGACTATATCTTGa < 4:108234/94‑1 (MQ=255)
gTTCATTGACCACGCTGATCACATTATTGTTGATCACCTTCGCAATTTTCATGGCATATCCCTCCAAATCTACTAAGAACAGACTATATCTTGATTGTACATTCTTTTTGTACTAGGTCAATATCATCAGGGAAAGACg > 3:315419/1‑139 (MQ=255)
gTTCATTGACCACGCTGATCACATTATTGTTGATCACCTTCGCAATTTTCATGGCATATCCCTCCAAATCTACTAAGAACAGACTATATCTTGATTGTACATTCTTTTTGTACTAGGTCAATATCATCAGGGAAAGACg > 5:443762/1‑139 (MQ=255)
aTTGACCACGCTGATCACATTATTGTTGATCACGTTCGCTATTTTCATGGCTTATCCCTCCAAATCTACTAAGAACAGACTATATCTTGATTGTACATTCTTTTTGTACTAGGTCAATATCATCAGGGAAAGACGGAAg < 2:159384/139‑1 (MQ=255)
aTTGACCACGCTGATCACATTATTGTTGATCACCTTCGCAATTTTCATGGCATATCCCTCCAAATCTACTAAGAACATACTATATCTTGATTGTACATTCTTTTTGTACTAGGTCAATATCATCAGGGAAAGACGGAAg < 3:250801/139‑1 (MQ=255)
aTTGACCACGCTGATCACATTATTGTTGATCACCTTCGCAATTTTCATGGCATATCCCTCCAAATCTACTAAGAACAGAc < 7:347960/80‑1 (MQ=255)
aTTGACCACGCTGATCACATTAATGTTGATCACCTTCGCAATTTTCATGGCATATCCCTCCAAATCTACTAAGAACAGACTATATCTTGATTGTACATTCTTTTTGTACTAGGTCAATATCATCAGGGAAAGACGGAAg < 2:318471/139‑1 (MQ=255)
tGACCACGCTGATCACATTATTGTTGATCACCTTCGCAATTTTCATGGCATATCCCTCCAAATctact < 3:392814/68‑1 (MQ=255)
tGACCACGCTGATCACATTATTGTTGATCACCTTCGCAATTTTCATGGCATATCCCTCCAAATctact > 4:392814/1‑68 (MQ=255)
tGACCACGCTGATCACATTATTGTTGATCACCTTCGCAATTTTCATGGCATATCCCTCCAAATCTACTAAGAACAGACTATATCTTGATTGTACATTCTTTTTGTACTAGGTCAATATCATCAGGGAAAGCCGGAAGCt > 3:448695/1‑139 (MQ=255)
tGACCACGCTGATCACATTATTGTTGATCACCTTCGCAATTTTCATGGCATATCCCTCCAAATCTACTAAGAACAGACTATATCTTGATTGTACATTCTTTTTGTACTAGGTCAATATCATCAGGGAAAGACGGAAGCt > 1:212175/1‑139 (MQ=255)
gACCACGCTGATCACATTATTGTTGATCACCTTCGCAATTTTCATGGCATAGCCCTCCAAATCTACTAAGAACAGACTATATCTTGATTGTACATTCTTTTTGTACTAGGTCAATATCTTCAGGGAAAGACGGAAGCTg < 2:211834/139‑1 (MQ=255)
ccACGCTGATCACATTATTGTTGATCACCTTCGCAATTTTCATGGCATATCCCTCCAAATCTACTAAGAACAGACTATATCTTGATTGTACATTCTTTTTGTACTAGGTCAATATCATCAGGGAAAGACGGAAGCTGGt < 3:80659/139‑1 (MQ=255)
ccACGCTGATCACATTATTGTTGATCACCTTCGCAATTTTCATGGCATATCCCTCCAAATCTACTAAGAACAGACTATATCTTGATTGTACATTCTTTTTGTACTAGGTCAATATCATCAGGGAAAGACGGAAGCTGGt < 2:437047/139‑1 (MQ=255)
ccACGCTGATCACATTATTGTTGATCACCTTCGCAATTTTCATGGCATATCCCTCCAAATCTACTAAGAACAGACTATATCTTGATTGTACATTCTTTTTGTACTAGGTCAATATCATCAGGGAAAGACGGAAGCTGGt < 3:244000/139‑1 (MQ=255)
agacaggATCAATTTTTTGTTGATCACCTTCGCTATTTTCATGGAATTTCCCTCCAATTCTACTTATAACTTATTTTATCTTTATTGTAAATTCTTTTTGTAGTAGGTCAATTTCATCAGGGATAGACGGAAGCTGGt < 2:203318/132‑1 (MQ=255)
aCGCTGATCACATTATTGTTGATCACCTTCGCAATTTTCATGGCATATCCCTCCAAATCTACTAAGAACAGACTATATCTTGATTGTACATTCTTTTTGTACTAGGTCAATATCATCAGGGAAAGACGGAAGCTGGt > 7:422187/1‑137 (MQ=255)
gCTGATCACATTATTGTTGATCACCTTCGCAATTTTCATGGCATATCCCTCCAAATCTACTAAGAACAGACTATATCTTGATTGTACATTCTTTTTGTACTAGGTCAATATCATCAGGGAAAGACGGAAGCTGGTCAg > 4:165635/1‑138 (MQ=255)
tCACATTATTGTTGATCACCTTCGCAATTTTCATGGCATATCCCTCCAAATCTACTAAGAACAGACTATATCTTGATTGTACATTCTTTTTGTACTAGGTCAATATCATCAGGGAAAGACGGAAGCTGGTCAGTACAAt > 2:450663/1‑139 (MQ=255)
cacaTTATTGTTGATCACCTTCGCAATTTTCATCGCATAGCCCTCCAAATCAAATAATAACAGACTATATCTTGATTGTACATTCTTTTTGTACTAGGTCAATATCATCAGGCAAAGTCGGAAGCTGGTCAGTACAAtt < 2:119968/139‑1 (MQ=255)
attattGTTGATCACCTTCGCAATTTTCATGGCATATCCCTCCAAATCTACTAAGAACAGACTATATCTTGATTGTACATTCTTTTTGTACTAGGTCAATATCATCAGGGAAAGACGGAAGCTGGTCAGTACAATTCAc > 7:261844/1‑139 (MQ=255)
attattGTTGATCACCTTCGCAATTTTCATGGCATATCCCTCCAAATCTACTAAGAACAGACTATATCTTGATTGTACATTCTTTTTGTACTAGGTCAATATCATCAGGGAAAGACGGAAGCTGGTCAGTACAATTCAc < 3:179438/139‑1 (MQ=255)
attattGTTGATCACCTTCGCAATTTTCATGGCATATCCCTCCAAATCTACTAAGAACAGACTATATCTTGATTGTACATTCTTTTTGTACTAGGTCAATAACAACAGGTAAACACGGAACCTGGTCAGTACAAtaaaa > 7:444895/1‑135 (MQ=255)
ttattGTTGATCACCTTCGCAATTTTCAGGGCAGATCCCTCCACCTCTACTACGAACTGACTATATCTTGATTGTACATTCTTTTTGTACTTGGTCAATATCATCTGGGAAAGACGGAAGCTGGGCAGTACAATTCACt < 2:389218/139‑1 (MQ=255)
tgttgATCACCTTCGCAATTTTCATGGCATGTCCCTCCAAATCTACTAAGAACAGACTATATCTTGATTGTACATTCTTTTTGTAc > 4:230996/1‑86 (MQ=255)
tgttgATCACCTTCGCAATTTTCATGGCATGTCCCTCCAAATCTACTAAGAACAGACTATATCTTGATTGTACATTCTTTTTGTAc < 3:230996/86‑1 (MQ=255)
tgttgATCACCTTCGCAATTTTCATGGCATATCCCTCCAAATCTACTAATAACAGACTATATCTTGATTGTACATTCTTTTTGTAATAGGTCAATATCATCAGGGAAAGACGGAAGATGGTCAGTACAATTCACTCCg > 5:224488/1‑138 (MQ=255)
tgttgATCACCTTCGCAATTTTCATGGCATATCCCTCCAAATCTACTAAGAACAGACTATATCTTGATTGTACAt > 2:350498/1‑75 (MQ=255)
tgttgATCACCTTCGCAATTTTCATGGCATATCCCTCCAAATCTACTAAGAACAGACTATATCTTGATTGTACAt < 1:350498/75‑1 (MQ=255)
tgttgATCACCTTCGCAATTTTCATGGCATATCCCTCCAAATCTACTAAGAACAGACTATATCTTGATTGTACATTCTTTTTGTACTAGGTCAATATCATCAGGGAAAGACGGAAGCTGGTCAGTa < 2:362832/126‑1 (MQ=255)
tgttgATCACCTTCGCAATTTTCATGGCATATCCCTCCAAATCTACTAAGAACAGACTATATCTTGATTGTACATTCTTTTTGTACTAGGTCAATATCATCAGGGAAAGACGGAAGCTGGTCAGTa > 1:362832/1‑126 (MQ=255)
tgttgATCACCTTCGCAATTTTCATGGCATATCCCTCCAAATCTACTAAGAACAGACTATATCTTGATTGTACATTCTTTTTGTACTAGGTCAATATCATCAGGGAAAGACGGAAGCTGGTCAGTACAATTCACTCCg > 2:45711/1‑138 (MQ=255)
ttgATCACCTTCGCAATTTTCATGGCATATCCCTCCAAATCTACTAAGAACAGACTATATCTTGATTGTACATTCTTTTTGTACTAGGTCAATATCATCAGGGAAAGACGGAAGCTGGTCAGTACAATTCACTCCGTAc > 7:218931/1‑139 (MQ=255)
aTCACCTTCGCAATTTTCATGGCATATCCCTCCAAATCTACTAAGaa > 2:362521/1‑47 (MQ=255)
aTCACCTTCGCAATTTTCATGGCATATCCCTCCAAATCTACTAAGaa < 1:362521/47‑1 (MQ=255)
aTCACCTTCGCAATTTTCATGGCATATCCCTCCAAATCTACTAAGCACAGACTATATCTTGATTGTACATTCTTTTTGTACTAGGTCAATATCATCAGGGAAAGACGGAAGCTGGTCAGTACAATTCACTCCGTACctg > 1:389218/1‑139 (MQ=255)
aTCACCTTCGCAATTTTCATGGCATATCCCTCCAAATCTACTAAGAACAGACTATATCTTGATTGTACATTCTTTTTGTACTAGGTCAGTATCATCAGGGAAAGACGGAAGCTGGTCAGTACAATTCACTCCGTACctg > 6:264223/1‑139 (MQ=255)
aTCACCTTCGCAATTTTCATGGCATATCCCTCCAAATCTACTAAGAACAGACTATATCTTGATTGTACATTCTTTTTGTACTAGGTCAATATCATCAGGGa > 7:227356/1‑101 (MQ=255)
aTCACCTTCGCAATTTTCATGGCATATCCCTCCAAATCTACTAAGAACAGACTATATCTTGATTGTACATTCTTTTTGTACTAGGTCAATATCATCAGGGa < 8:227356/101‑1 (MQ=255)
aTCACCTTCGCAATTTTCATGGCATATCCCTCCAAATCTACTAAGAACAGACTATATCTTGATTGTACATTCTTTTTGTACTAGGTCAATATCATCAGGGAAAGACGGAAg > 8:173578/1‑111 (MQ=255)
aTCACCTTCGCAATTTTCATGGCATATCCCTCCAAATCTACTAAGAACAGACTATATCTTGATTGTACATTCTTTTTGTACTAGGTCAATATCATCAGGGAAAGACGGAAg < 7:173578/111‑1 (MQ=255)
aTCACCTTCGCAATTTTCATGGCATATCCCTCCAAATCTACTAAGAACAGACTATATCTTGATTGTACATTCTTTTTGTACTAGGTCAATATCATCAGGGAAAGACGGAAGCTGGTCAGt < 8:270730/120‑1 (MQ=255)
aTCACCTTCGCAATTTTCATGGCATATCCCTCCAAATCTACTAAGAACAGACTATATCTTGATTGTACATTCTTTTTGTACTAGGTCAATATCATCAGGGAAAGACGGAAGCTGGTCAGTACAATTCACTCCGTACctg > 1:210243/1‑139 (MQ=255)
aTCACCTTCGCAATTTTCATGGCATATCCCTCCAAATCTACTAAGAACAGACTATATCTTGATTGTACATTCTTTTTGTACTAGGTCAATATCATCAGGGAAAGACGGAAGCTGGTCAGTACAATTCACTCCGTACctg > 8:466270/1‑139 (MQ=255)
aTCACCTTCGCAATTTTCATGGCATATCCCTCCAAATCTACTAAGAACAGACTATATCTTGATTGTACATTCTTTTTGTACTAGGTCAATATCATCAGGGAAAGACGGAAGCTGGTCAGTACAATTCACTCCGTACctg > 2:16308/1‑139 (MQ=255)
aTCACCTTCGCAATTTTCATGGCATATCCCTCCAAATCTACTAAGAACAGACTATATCTTGATTGTACATTCTTTTTGTACTAGGTCAATATCATCAGGGAAAGACGGAAGCTGGTCAGTACAATTCACTCCGTACctg > 3:136320/1‑139 (MQ=255)
aTCACCTTCGCAATTTTCATGGCATATCCCTCCAAATCTACTAAGAACAGACTATATCTTGATTGTACATTCTTTTTGTACTAGGTCAATATCATCAGGGAAAGACGGAAGCTGGTCAGTACAATTCACTCCGTACctg > 1:107814/1‑139 (MQ=255)
aTCACCTTCGCAATTTTCATGGCATATCCCTCCAAATCTACTAAGAACAGACTATATCTTGATTGTACATTCTTTTTGTACTAGGTCAATATCATCAGGGAAAGACGGAAGCTGGTCAGTACAATTCACTCCGTACctg > 4:224832/1‑139 (MQ=255)
aTCACCTTCGCAATTTTCATGGCATATCCCTCCAAATCTACTAAGAACAGACTATATCTTGATTGTACATTCTTTTTGTACTAGGTCAATATCATCAGGGAAAGACGGAAGCTGGTCAGTACAATTCACTCCGTACctg > 5:221890/1‑139 (MQ=255)
aTCACCTTCGCAATTTTCATGGCATATCCCTCCAAATCTACTAAGAACAGACTATATCTTGATTGTACATTCTTTTTGTACTAGGTCAAAATCATCAGGGAAAGACGGAAGCTGGTCAGTACAATTCACTCCGTACctg > 8:30078/1‑139 (MQ=255)
cACCTTCGCAATTTTCATGGCATATCCCTCCAAATCTACTAAGAACAGACTATATCTTGATTGTACATTCTTTTTGTACTAGGTCAATATCATCAGGGAAAGACGGAAGCTGGTCAGTACAAtt > 3:26104/1‑124 (MQ=255)
cACCTTCGCAATTTTCATGGCATATCCCTCCAAATCTACTAAGAACAGACTATATCTTGATTGTACATTCTTTTTGTACTAGGTCAATATCATCAGGGAAAGACGGAAGCTGGTCAGTACAAtt < 4:26104/124‑1 (MQ=255)
tCGCAATTTTCATGGCATATCCCTCCAAATCTACTAAGAACAGACTATATCTTGATTGTACATTCTTTTTGTACTAgg < 1:48914/78‑1 (MQ=255)
tCGCAATTTTCATGGCATATCCCTCCAAATCTACTAAGAACAGACTATATCTTGATTGTACATTCTTTTTGTACTAgg > 2:48914/1‑78 (MQ=255)
tCGCAATTTTCATGGCATATCCCTCCAAATCTACTAAGAACAGACTATATCTTGATTGTACATTCTTTTTGTACTAGGTCAATATCATCAGGGAAAGACGGAAg > 7:461788/1‑104 (MQ=255)
tCGCAATTTTCATGGCATATCCCTCCAAATCTACTAAGAACAGACTATATCTTGATTGTACATTCTTTTTGTACTAGGTCAATATCATCAGGGAAAGACGGAAg < 8:461788/104‑1 (MQ=255)
ttCATGGCATATCCCTCCAAATCTACTAAGAACAGACTATATCTTGATTGTACATTCTTTTTGTACTAGGTCAATATCATCAGGGAAAGACGGAAGCTGGTCAGTACAATTCACTCCGTACCTGCTGCCCGGGCTGttt > 5:216656/1‑139 (MQ=255)
aTGGCATATCCCTCCAAATCTACTAAGAACAGACTATATCTTGATTGTACATTCTTTTTGTACTAGGTCAATATCATCAGGGAAAGACGGAAGCTGGTCAGTACAATTCACTCCGTACCTGCTGCCCGGGCTGttttt > 3:123554/1‑138 (MQ=255)
|
TGCGGGCTTCATCGACATCATCGCCGGACTTTTTCTGAAACGCGAGCCCCCTGCCCATGACGACCAATTCTTTCCCCTGTTCATTGACCACGCTGATCACATTATTGTTGATCACCTTCGCAATTTTCATGGCATGTCCCTCCAAATCTACTAAGAACAGACTATATCTTGATTGTACATTCTTTTTGTACTAGGTCAATATCATCAGGGAAAGACGGAAGCTGGTCAGTACAATTCACTCCGTACCTGCTGCCCGGGCTGTTTTT > CP006881/3831422‑3831687
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
