Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A15 F58 I6 R3 125 101.0 3774540 95.0% 3585813 126.5

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA CP006881 3,772,635 A→G Y334C (TAT→TGT)  U712_19455 → Protein dltB

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0068813,772,6350AG98.8% 317.3 / ‑4.5 86Y334C (TAT→TGT) U712_19455Protein dltB
Reads supporting (aligned to +/- strand):  ref base A (1/0);  new base G (40/44);  total (41/45)
Fisher's exact test for biased strand distribution p-value = 4.82e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.27e-01

GAGATTATGTGTTTATGAGATTCGTATTTTGGATGACTAAGAAAAAGTGGATCAAAAACCGTATGGCCGTCTCAAACATCGGGTATTTCCTGCTGTTTATGCTGATGGGGGTTTGGCACGGGCTCGCGCCGCAATATATCATTTACGGCCTCTATCACGCCGTTCTGATGACGTGTTACAACTTTTTCGAGAAGTGGAATAAGAAATATAAATGGCTGCCGTCCAACCGCTGGACAACCATTCTCGCTATTGTGATCACATTCCATTTCG  >  CP006881/3772500‑3772769
                                                                                                                                       |                                                                                                                                      
gagaTTATGTGTTTATGAGATTCGTATTTTGGATGACTAAGAAAAAGTGGATCAAAAACCGTATGGCCGTCTCAAACATCGGGTATTTCCTGCTGTTTATGCTGATGGGGGTTTGGCACGGGCTCGCGCCGCAatgtat                                                                                                                                     <  8:224316/139‑1 (MQ=255)
 agaTTATGTGTTTATGAGATTCGTATTTTGGATGACTAAGAAAAAGTGGATCAAAAACCGTATGGCCGTCTCAAACATCGGGGATTTCCTGCTGTTTATGCTGATGGGGGTTTGGCACGGGCTCGCGCCGCAatgtat                                                                                                                                     >  4:6173/1‑138 (MQ=255)
       tgtgTTTATGAGATTCGTATTTTGGATGACTAAGAAAAAGTGGATCAAAAACCGTATGGCCGTCTCAAACATCGGGTATTTCCTGCTGTTTATGCTGATGGGGGTTTGGCACGGGCTCGCGCCGCAATGTATCATTTa                                                                                                                               <  4:338101/138‑1 (MQ=255)
       tgtgTTTATGAGATTCGTATTTTGGATGACTAAGAAAAAGTGGATCAAAAACCGTATGGCCGTCTCAAACATCGGGTATTTCCTGCTGTTTATGCTGATGGGGGGTTGGCACGGGCTCGCGCCGCAATGTATCATTTa                                                                                                                               <  6:382549/138‑1 (MQ=255)
       tgtgTTTATGAGATTCGTATTTTGGATGACTAAGAAAAAGTGGATCAAAAACCGTAGGGCCGTCTCAAACATCGGGTATTTCCTGCTGTTTATGCTGATGGGGGTTTGGCACGGGCTCGCGCCGCAATGTATCATTTa                                                                                                                               <  7:382197/138‑1 (MQ=255)
         tgtTTATGAGATTCGTATTTTGGATGACTAAGAAAAAGTGGATCAAAAACCGTATGGCCGTCTCAAACATCGGGTATTTCCTGCTGTTTATGCTGATGGGGGTTTGGCACGGGCTCGCGCCGCAATGTATCATTTACgg                                                                                                                            <  5:72453/139‑1 (MQ=255)
          gtTTATGAGTTTAGGTATTTGGATGACTAAGAAAAACTGGATCAAAAACCGTATGGCCGTCTCAAACATCGGGTATTTCCTGCTGTTTATGCTGATGGGGGGTTGGCACGGGCTCGCGCCGCAATGTATCATTTACGGc                                                                                                                           <  3:30168/139‑1 (MQ=255)
           tttATGAGATTCGTATTTTGGATGACTAAGAAAAAGTGGATCAAAAACCGTATGGCCGTCTCAAACATCGGGTATTTCCTGCTGTTTATGCTGATGGGGGTTTGGCACGGGCTCGCGCCGCAATTTATCATTTACGGc                                                                                                                           <  5:357043/138‑1 (MQ=255)
           tttATGAGATTCGTATTTTGGATGACTAAGAAAAAGTGGATCAAAAACCGTATGGCCGTCTCAAACATCGGGTATTTCCTGCTGTTTATGCTGATGGGGGTTTGGCACGGGCTCGCGCCGCAATGTATCATTTACGGcc                                                                                                                          >  8:237168/1‑139 (MQ=255)
           tttATGAGATTCGTATTTTGGATGACTAAGAAAAAGTGGATCAAAAACCGTATGGCCGTCTCAAACATCGGGTATTTCCTGCTGTTTATGCTGATGGGGGTTTGGCACGGGCTCGCGCCGCAATGTATCATTTACGGc                                                                                                                           <  6:214646/138‑1 (MQ=255)
           tttATGAGATTCGTATTTTGGATGACTAAGAAAAAGTGGATCAAAAACCGTATGGCCGTCTCAAACATCGGGTATTTCCTGCTGTTTATGCTGATGGGGGTTTGGCACGGGCTCGCGCCGCAATGTATCATTTACGGc                                                                                                                           <  7:125624/138‑1 (MQ=255)
           tttATGAGATTCGTATTTTGGATGACTAAGAAAAAGTGGATCAAAAACCGTATGGCCGTCTCAAACATCGGGTATTTCCTGCTGTTTATGCTGATGGGGGTTTGGCACGGGCTCGCGCCGCAATGTATCATTTACGGc                                                                                                                           <  4:179662/138‑1 (MQ=255)
           tttATGAGATTCGTATTTAGGATGACTAAGAAAAAGAGGATCAAAAACCGTATGGCCGTCTCAAACATCGGGTATTTCCTGCTGTTTATGCTGAGGGGGGTTCGCCACGGGCTCGCGCCGCAATGTATCATTTACGGc                                                                                                                           <  7:394687/138‑1 (MQ=255)
             tATGAGATTCGTATTTTGGATGACTAAGAAAAAGTGGATCAAAAACCGTATGGCCGTCTCAAACATCGGGTATTTCCTGCTGTTTATGCTGATGGGGGTTTGGCACGGGCTCGCGCCGCAATGTATCATTTACGGCctc                                                                                                                        >  1:425586/1‑139 (MQ=255)
               tGAGATTCGTATTTTGGATGACTAAGAAAAAGTGGATCAAAAACCGTATGGCCGTCTCAAACATCGGGTATTTCCTGCTGTTTATGCTGATGGGGGTTTGGCACGGGCTCGCGCCGCAATGTATCATTTACGGCCTCTa                                                                                                                      <  7:237168/139‑1 (MQ=255)
                   aTTCGTATTTTGGATGACTAAGAAAAAGTGGATCAAAAACCGTATGGCCGTCTCAAACATAGGGTATTTCCTGCGGTTTATGCTGATGGGGGTTTGGCACGGGCTCGCGCCGCAATGTATCATTTACGGCCTCTATCAc                                                                                                                  >  3:36120/1‑139 (MQ=255)
                    ttCGTATTTTGGATGACTAAGAAAAAGTGGATCAAAAACCGTATGGCCGTCTCAAACATCGGGTATTTCCTGCTGTTTATGCTGATGGGGGTTTGGCACGGGCTCGCGCCGCAATGTATCATTTACGGCCTCTATCACg                                                                                                                 <  4:329148/139‑1 (MQ=255)
                    ttCGTATTTTGGATGACTAAGAAAAAGTGGATCAAAAACCGTATGGCCGTCTCAAACATCGGGTATTTCCTGCTGTTTATGCTGATGGGGGTTTGGCACGGGCTCGCGCCGCAATGTATCATTTACGGCCTCTATCACg                                                                                                                 <  4:256003/139‑1 (MQ=255)
                     tCGTATTTTGGATGACTAAGAAAAAGTGGATCAAAAACCGTATGGCCGTCTCAAACATCGGGTATTTCCTGCTGTTTATGCTGATGGGGGTTTGGCACGGGCTCGCGCCGCAATGTATCATTTACGGCCTCTATCACGc                                                                                                                >  8:286895/1‑139 (MQ=255)
                               gATGACTCAGAAATAGTGGATCAAAAACCGTATGGCCGTCTCAAACATCGGGTATTTCCTGCTGTTTATGCTGATGGGGGTTTGGCACGGGCTCGCGCCGCAATGTATCATTTACGGCCTCTATCACGCCGTTCtgatg                                                                                                      <  5:33457/139‑1 (MQ=255)
                               gATGACTAAGAAAAAGTGGATCAAAAACCGTATGGCCGTCTCAAACATCGGGTATTTCCTGCTGTTTATGCTGATGGGGGTTTGGCACGGGCTCGCGCCGCAATGTATCATTTACGGCCTCTATCACGCCGTTCtgatg                                                                                                      <  3:355321/139‑1 (MQ=255)
                               gATGACTAAGAAAAAGTGGATCAAAAACCGTATGGCCGTCTCAAACATCGGGTATTTCCTGCTGTTTATGCTGATGGGGGTTTGGCACGGGCTCGCGCCGCAATGTATCATTTACGGCCTCTATCACGCCGTTCtgat                                                                                                       <  8:349545/138‑1 (MQ=255)
                                 tGACTAAGAAAAAGTGGATCAAAAACCGTATGGCCGTCTCAAACATCGGGTATTTCCTGCTGTTTATGCTGATGGGGGTTTGGCACGGGCTCGCGCCGCAATGTATCATTTACGGCCTCTATCACGCCGTTCTGATGAc                                                                                                    <  3:463603/139‑1 (MQ=255)
                                  gACTAAGAAAAAGTGGATCAAAAACAGTATGGCCGTCTCAAACATCGGGTATTTCCTGCTGTTTATGCTGATGGGGGTTTGGCACGGGCTCGCGCCGCAATGTATCATTTACGGCCTCTATCACGCCGTTCTGATGAc                                                                                                    <  3:6173/138‑1 (MQ=255)
                                   aCTAAGAAAAAGTGGATCAAAAACCGTATGGCCGTCTCAAACATCGGGTATTTCCTGCTGTTTATGCTGATGGGGGTTTGGCACGGGCTCGCGCCGCAATGTATCATTTACGGCCTCTATCACGCCGTTCTGATGACgt                                                                                                  >  2:401730/1‑139 (MQ=255)
                                   aCTAAGAAAAAGTGGATCAAAAACCGTATGGCCGTCTCAAACATCGGGTATTTCCTGCTGTTTATGCTGATGGGGGTTTGGCACGGGCTCGCGCCGCAATGTATCATTTACGGCCTCTATCACGCCGTTCTGATGACgt                                                                                                  >  6:27960/1‑139 (MQ=255)
                                    cTAAGAAAAAGTGGATCAAAAACCGTATGGCCGTCTCAAACATCGGGTATTTCCTGCTGTTTATGCTGATGGGGGTTTGGCACGGGCTCGCGCCGCAATGTATCATTTACGGc                                                                                                                           >  4:9423/1‑113 (MQ=255)
                                    cTAAGAAAAAGTGGATCAAAAACCGTATGGCCGTCTCAAACATCGGGTATTTCCTGCTGTTTATGCTGATGGGGGTTTGGCACGGGCTCGCGCCGCAATGTATCATTTACGGc                                                                                                                           <  3:9423/113‑1 (MQ=255)
                                             aGTGGATCAAAAACCGTATGGCCGTCTCAAACATCGGGTATTTCCTGCTGTTTATGCTGATGGGGGTTTGGCACGGGCTCGCGCCGCAATGTATCATTTACGGCCTCTATCACGCCGTTCTGATGACGTGTTACAACtt                                                                                        >  5:425184/1‑139 (MQ=255)
                                                   tCAAAAACCGTATGGCCGTCTCAAACATCGGGTATTTCCTGCTGTTTATGCTGATGGGGGTTTGGCACGGGCTCGCGCCGCAATGTATCATTTACGGc                                                                                                                           <  6:460082/98‑1 (MQ=255)
                                                   tCAAAAACCGTATGGCCGTCTCAAACATCGGGTATTTCCTGCTGTTTATGCTGATGGGGGTTTGGCACGGGCTCGCGCCGCAATGTATCATTTACGGCCTCTATCACg                                                                                                                 >  6:242961/1‑108 (MQ=255)
                                                   tCAAAAACCGTATGGCCGTCTCAAACATCGGGTATTTCCTGCTGTTTATGCTGATGGGGGTTTGGCACGGGCTCGCGCCGCAATGTATCATTTACGGCCTCTATCACg                                                                                                                 <  5:242961/108‑1 (MQ=255)
                                                   tCAAAAACCGTATGGCCGTCTCAAACATCGGGTATTTCCTGCTGTTTATGCTGATGGGGGTTTGGCACGGGCTCGCGCCGCAATGTATCATTTACGGCCTCTATCACGCCGTTCTGATGACGTGTTACAACTTTTTc                                                                                    >  6:383696/1‑137 (MQ=255)
                                                   tCAAAAACCGTATGGCCGTCTCAAACATCGGGTATTTCCTGCTGTTTATGCTGATGGGGGTTTGGCACGGGCGCGCGCCGCAATGTATCATTTACGGc                                                                                                                           >  5:460082/1‑98 (MQ=255)
                                                           cGTATGGCAGTCTGATTGATCGGGTTTTTCGTGCTGTTTTTGGTGATGGGGGTTTGGCACGGGCTCGCGCCGCATTGTATCATTTACGGCCTCTTTCACGCCGTTCTGATGTCGTGTTACAACTTTTTCTAGAAGTggt                                                                          <  4:344970/139‑2 (MQ=255)
                                                            gTATGGCCGTCTCAAACATCGGGTATTTCCTGCTGTTTATGCTGATGGGGGTTTGGCACGGGCTCGCGCCGCAATGTATCATTTACGGCCTCTATCACGCCGTTCTGATGACGTGTTACAACTTTTTCGAGAAGTGGaa                                                                         >  2:109189/1‑139 (MQ=255)
                                                               tGGCCGTCTCAAACATCGGGTATTTCCTGCTGTTTATGCTGATGGGGGTTTGGCACGGGCTCGCGCCGCAATGTATCATTTACGGCCTCTATCACGCCGTTCTGATGACGTGTTACAACTTTTTCGAGAAGTGGAATaa                                                                      <  1:456433/139‑1 (MQ=255)
                                                                 gCCGTCTCAAACATCGGGTATTTCCTGCTGTTTATGCTGATGGGGGTTTGGCACGGGCTCGCGCCGCAATGTATCATTTACGGCCTCTATCACGCCGTTCTGATGACGTGTTACAACTTTTTCGAGAAGTGGAATAAg                                                                     <  2:414865/138‑1 (MQ=255)
                                                                     tctcAAACATCGGGTATTTGCGGCTGTTTATGCTGATGGGGGTTTGGCCCGGGCTCGCGCCGCAATGTATCATTTACGGCCTCTATCACGCCGTTGGGATGACGTGTTACAACTGTTTCGAGAAGTGGAATAAGAAtta                                                                >  4:4518/1‑139 (MQ=255)
                                                                     tctcAAACATCGGGTATTTCCTGCTGTTTATGCTGATGGGGGTTTGGCCCGGGCTCGCGCCGCAATGTATCATTTACGGCCTCTATGACGCCGGTGTTATGACGTGGTACAACTTTTTAGCTAAGTGGAATaataaata                                                                >  8:428382/1‑139 (MQ=255)
                                                                     tctcAAACATCGGGTATTTCCTGCTGTTTATGCTGATGGGGGTTTGGCACGGGCTCGCGCCGCAatgtat                                                                                                                                     <  5:377142/70‑1 (MQ=255)
                                                                     tctcAAACATCGGGTATTTCCTGCTGTTTATGCTGATGGGGGTTTGGCACGGGCTCGCGCCGCAatgtat                                                                                                                                     >  6:377142/1‑70 (MQ=255)
                                                                     tctcAAACATCGGGTATTTCCTGCTGTTTATGCTGATGGGGGTTTGGCACGGGCTCGCGCCGCAATGTATCATTTACGGc                                                                                                                           <  3:451470/80‑1 (MQ=255)
                                                                     tctcAAACATCGGGTATTTCCTGCTGTTTATGCTGATGGGGGTTTGGCACGGGCTCGCGCCGCAATGTATCATTTACGGc                                                                                                                           >  5:199124/1‑80 (MQ=255)
                                                                     tctcAAACATCGGGTATTTCCTGCTGTTTATGCTGATGGGGGTTTGGCACGGGCTCGCGCCGCAATGTATCATTTACGGc                                                                                                                           >  4:451470/1‑80 (MQ=255)
                                                                     tctcAAACATCGGGTATTTCCTGCTGTTTATGCTGATGGGGGTTTGGCACGGGCTCGCGCCGCAATGTATCATTTACGGc                                                                                                                           <  6:199124/80‑1 (MQ=255)
                                                                     tctcAAACATCGGGTATTTCCTGCTGTTTATGCTGATGGGGGTTTGGCACGGGCTCGCGCCGCAATGTATCATTTACGGCCTCTATCACGCCGTTCTGATGACGTGTTACAACTTTTTCGAGAAGTGGAATAAGAAata                                                                >  1:325503/1‑139 (MQ=255)
                                                                     tctcAAACATCGGGTATTTCCTGCTGTTTATGCTGATGGGGGTTTGGCACGGGCTCGCGCCGCAATGTATCATTTAAGGCCTCTATCACGCCGTTCTGATGACGTGTTACAACTTTTTCGAGAAGTGGAATAAGAAata                                                                >  3:391471/1‑139 (MQ=255)
                                                                                gggTATTTCCTGCTGTTTATGCTGATGGGGGTTTGGCACGGGCTCGCGCCGCAATGTATCATTTACGGCCTCTATCACGCCGTTCTGATGACGTGTTACAACTTTTTCGAGAAGTGGAATAAGAAATATAAATGGCTGc                                                     >  5:280491/1‑139 (MQ=255)
                                                                                gggTATTTCCTGCTGTTTATGCTGATGGGGGTTTGGCACGGGCTCGCGCCGCAATGTATCATTTACGGCCTCTATCACGCCGTTCTGATGACGTGTTACAACTTTTTCGAGAAGTGGAATAAGAAATATAAATGGCTGc                                                     >  7:298987/1‑139 (MQ=255)
                                                                                gggTATTTCCTGCTGTTTATGCTGATGGGGGGTTGGCACGGGCTCGCGCCGCAATGTATCATTTACGGCCTCTATCACGCCGTTCTGATGACGTGTTACAACTTTTTCGAGAAGTGGAATAAGAAATATAAATGGCTg                                                      <  1:180744/138‑1 (MQ=255)
                                                                                     tttCCTGCTGTTTATGCTGATGGGGGTTTGGCACGGGCTCGCGCCGCAATGTATCATTTACGGCCTCTATCACGCCGTTCTGATGACGTGTTACAACTTTTTCGAGAAGTGGAATAAGAAATATAAATGGCTGCCGTcc                                                <  5:212744/139‑1 (MQ=255)
                                                                                     tttCCTGCTGTTTATGCTGATGGGGGTTTGGCACGGGCTCGCGCCGCAATGTATCATTTACGGCCTCTATCACGCCGTTCTGATGACGTGTTACAACTTTTTCGAGAAGTGGAATAAGAAATATAAATGGCTGCCGTc                                                 >  3:83029/1‑138 (MQ=255)
                                                                                     tttCCTGCTGTTTATGCTGATGGGGGTTTGGCACGGGCTCGCGCCGCAATGTATCATTTACGGCCTCTATCACGCCGTTCTGATGACGTGTTACAACTTTTTCGAGAAGTGGAATAAGAAATATAAATGGCTGCCGTc                                                 >  7:162348/1‑138 (MQ=255)
                                                                                       tCCTGCTGTTTATGCTGATGGGGGTTTGGCACGGGCTCGCGCCGCAATGTATCATTTACGGCCTCTATCACGCCg                                                                                                              <  5:14795/75‑1 (MQ=255)
                                                                                       tCCTGCTGTTTATGCTGATGGGGGTTTGGCACGGGCTCGCGCCGCAATGTATCATTTACGGCCTCTATCACGCCg                                                                                                              >  6:14795/1‑75 (MQ=255)
                                                                                       tCCTGCTGTTTATGCTGATGGGGGTTTGGCACGGGCTCGCGCCGCAATGTATCATTTACGGCCTCTATCACGCCGTTCtgatga                                                                                                     <  5:322494/84‑1 (MQ=255)
                                                                                       tCCTGCTGTTTATGCTGATGGGGGTTTGGCACGGGCTCGCGCCGCAATGTATCATTTACGGCCTCTATCACGCCGTTCtgatga                                                                                                     >  6:322494/1‑84 (MQ=255)
                                                                                       tCCTGCTGTTTATGCTGATGGGGGTTTGGCACGGGCTCGCGCCGCAATGTATCATTTACGGCCTCTATCACGCCGTTCTGATGACGTGTTACAACTTTTTCGAGAAGAGGAATAAGAAATATAAATGGCTGCCGTCCaa                                              >  7:259747/1‑139 (MQ=255)
                                                                                         ctgctgTTTATGCTGATGGGGGTTTGGCACGGGCTCGCGCCGCAATGTATCATTTACGGCCTCTATCACGCCGTTCTGATGACGTGTTACAACTTTTTCGAGAAGTGGAATAAGAAATATAAATGGCTGCCGTCCAAc                                             <  7:286895/138‑1 (MQ=255)
                                                                                           gctgTTTATGCTGATGGGGGTTTGGCACGGGCTCGCGCCGCAATGTATCATTTACGGCCTCTATCACGCCGTTCTGATGACGTGTTACAACTTTTTCGAGAAGTGGAATAAGAAATATAAATGGCTGCCGTCCAACCGc                                          >  4:243651/1‑139 (MQ=255)
                                                                                            ctgTTTATGCTGATGGGGGTTTGGCACGGGCTCGCGCCGCAATGTATCATTTACGGCCTCTATCACGCCGTTCTGATGACGTGTTACAACTTTTTCGAGAAGTGGAATAAGAAATATAAATGGCTGCCGTCCAACCg                                           <  1:357300/137‑1 (MQ=255)
                                                                                            ctgGTTATGCTGATGGGGGTTTGGCACGGGCTCGCGCCGCAATGTATCATTTACGGCCTCTATCACGCCGTTCTGATGACGTGTTACAACTTTTTCGAGAAGTGGAATAAGAAATATAAATGGCTGCCGTCCAACCg                                           <  1:401730/137‑1 (MQ=255)
                                                                                               tttATGCTGATGGGGGTTTGGCACGGGCTCGCGCCGCAATGTATCATTTACGGCCTCTATCACGCCGTTCTGATGACGTGTTACAACTTTTTCGAGAAGTGGAATAAGAAATATAAATGGCTGCCGTCCAACCGCTg                                        <  5:27960/137‑1 (MQ=255)
                                                                                                 tATGCTGATGGGGGTTTGGCACGGGCTCGCGCCGCAATGTATCATTTACGGCCTCTATCACGCCGTTCTGATGACGTGTTACAACTTTTTCGAGAAGTGGAATAAGAAATATAAATGGCTGCCGTCCAACCGCTGGAc                                     >  5:379100/1‑138 (MQ=255)
                                                                                                 tATGCTGATGGGGGTTTGGCACGGGCTCGCGCCGCAATGTATCATTTACGGCCTCTATCACGCCGTTCTGATGACGTGTTACAACTTTTTCGAGAAGTGGAATAAGAAATATAAATGGCTGCCGTCCAACCGCTGGAc                                     >  5:373023/1‑138 (MQ=255)
                                                                                                       gATGGGGGTTTGGCACGGGCTCGCGCCGCAATGTATCATTTACGGCCTCTATCACGCCGTTCTGATGACGTGTTACAACTTTTTCTAGAAGTGGAATAAGAAATATAAATGGCTGACTTCCAAACGCTGGACAACCAt                               >  4:270291/1‑138 (MQ=255)
                                                                                                        aTGGGGGTTTGGCACGGGCTCGCGCCGCAATGTATCATTTACGGCCTCTATCACGCCGTTCTGATGACGTGTTACAACTTTTTCGAGAAGTGGAATAAGa                                                                    <  5:293684/100‑1 (MQ=255)
                                                                                                        aTGGGGGTTTGGCACGGGCTCGCGCCGCAATGTATCATTTACGGCCTCTATCACGCCGTTCTGATGACGTGTTACAACTTTTTCGAGAAGTGGAATAAGa                                                                    >  6:293684/1‑100 (MQ=255)
                                                                                                        aTGGGGGTTTGGCACGGGCTCGCGCCGCAATGTATCATTTACGGCCTCTATCACGCCGTTCTGATGACGTGTTACAACTTTTTCGAGAAGTGGAATAAGAAATATAAATGGCTGCCGTCCAACCGCTGGACAACCAtt                              <  5:383696/138‑1 (MQ=255)
                                                                                                        aTGGGGGTTTGGCACGGGCTCGCGCCGCAATGTATCATTTACGGCCTCTATCACGCCGTTCTGATGACGTGTTACAACTTTTTCGAGAAGTGGAATAAGAAATATAAATGGCTGCCGTCCAACCGCTGGACAACCAt                               <  7:428382/137‑1 (MQ=255)
                                                                                                         tGGGGGTTTGGCACGGGCTCGCGCCGCAATGTATCATTTACGGCCTCTATCACGCCGTTCTGATGACGTGTTACAACTTTTTCGAGaa                                                                               >  8:26962/1‑88 (MQ=255)
                                                                                                         tGGGGGTTTGGCACGGGCTCGCGCCGCAATGTATCATTTACGGCCTCTATCACGCCGTTCTGATGACGTGTTACAACTTTTTCGAGaa                                                                               <  7:26962/88‑1 (MQ=255)
                                                                                                         tGGGGGTTTGGCACGGGCTCGCGCCGCAATGTATCATTTACGGCCTCTATCACGCCGTTCTGATGACGTGTTACAACTTTTTCGAGAAGTGGAATAAGAAATATAAATGGCTGCCGTCCAACCGCTGGACAACCATtct                            >  6:377811/1‑139 (MQ=255)
                                                                                                         tGGGGGTTTGGCACGGGCTCGCGCCGCAATGTATCATTTACGGCCTCTATCACGCCGTTCTGATGACGTGTTACAACTTTTTCGAGAAGTGGAATAAGAAATATAAATGGCTGCCGTCCAACCGCTGGACAACCATtct                            >  5:434098/1‑139 (MQ=255)
                                                                                                                  ggCACGGGCTCGCGCCGCAATGTATCATTTACGGCCTCTATCACGCCGTTCTGATGACGTGTTACAACTTTTTCGAGAAGTGGAATAAGAAATATAAATGGCTGCCGTCCAACCGCTGGACAACCATTCTCg                          >  4:165498/1‑132 (MQ=255)
                                                                                                                  ggCACGGGCTCGCGCCGCAATGTATCATTTACGGCCTCTATCACGCCGTTCTGATGACGTGTTACAACTTTTTCGAGAAGTGGAATAAGAAATATAAATGGCTGCCGTCCAACCGCTGGACAACCATTCTCg                          <  3:165498/132‑1 (MQ=255)
                                                                                                                  ggCACGGGCTCGCGCCGCAATGTATCATTTACGGCCTCTATCACGCCGTTCTGATGACGTGTTACAACTTTTTCGAGAAGTGGAATAAGAAATATAAATGGCTGCCGTCCAACCGCTGGACAACCATTCTCGCTATtg                    <  8:298987/138‑1 (MQ=255)
                                                                                                                  ggCACGGGCTCGCGCCGCAATGTATCATTTACGGCCTCTATCACGCCGGTCTGATGACGTGTTACAACTTTTTCGAGAAGTGGAATAAGAAATATAAATGGCTGCCGTCCAACCGCTGGACAACCAGTCTCGCTATtgt                   >  7:455113/1‑139 (MQ=255)
                                                                                                                       gggCTCGCGCCGCAATGTATCATTTACGGCCTCTATCACGCCGTTCTGATGACGTGTTACAACTTTTTCGAGAAGTGGAATAAGAAATATAAATGGCTGCCGTCCAACCGCTGGACAACCATTCTCGCTATTGTGATca              >  4:431090/1‑139 (MQ=255)
                                                                                                                       gggCTCGCGCCGCAATGTATCATTTACGGCCTCTATCACGCCGTTCTGATGACGTGTTACAACTTTTTCGAGAAGTGGAATAAGAAATATAAATGGCTGCCGTCCAACCGCTGGACAACCATTCTCGCTATTGTGATca              <  4:391471/139‑1 (MQ=255)
                                                                                                                       gggCTCGCGCCGCAATGTATCATTTACGGCCTCTATCACGCCGTTCTGATGACGTGTTACAACTTTTTCGAGAAGTGGAATAAGAAATATAAATGGCTGCCGTCCAACCGCTGGACAACCATTCTCGCTATTGTGATca              <  8:259747/139‑1 (MQ=255)
                                                                                                                        ggCTCGCGCCGCAATGTATCATTTACGGCCTCTATCACGCCGTTCTGATGACGTGTTACAACTTTTTCGAGAAGTGGa                                                                          >  2:72639/1‑78 (MQ=255)
                                                                                                                        ggCTCGCGCCGCAATGTATCATTTACGGCCTCTATCACGCCGTTCTGATGACGTGTTACAACTTTTTCGAGAAGTGGa                                                                          <  1:72639/78‑1 (MQ=255)
                                                                                                                        ggCTCGCGCCGCAATGTATCATTTACGGCCTCTATCACGCCGTTCTGATGACGTGTTACAACTTTTTCGAGAAGTGGAATAAGAAATATAAATGGCTGCCGTCCAACCGCTGGACAACCATTCTCGCTATTGTGATcac             >  4:243722/1‑139 (MQ=255)
                                                                                                                          cTCGCGCCGCAATGTATCATTTACGGCCTCTATCACGCCGTTCTGATGACGTGTTACAACTTTTTCGAGAAGTGGAATAAGAAATATAAATGGCTGCCGTCCAACCGCTGGACAACCATTCTCGCTATTGTGATCACAt           <  2:73815/139‑1 (MQ=255)
                                                                                                                                   cAATGTATCATTTACGGCCTCTATCACGCCGTTCTGATGACGTGTTACAACTTTTTCGAGAAGTGGAATAAGaa                                                                   >  4:89885/1‑74 (MQ=255)
                                                                                                                                   cAATGTATCATTTACGGCCTCTATCACGCCGTTCTGATGACGTGTTACAACTTTTTCGAGAAGTGGAATAAGaa                                                                   <  3:89885/74‑1 (MQ=255)
                                                                                                                                   cAATGTATCATTTACGGCCTCTATCACGCCGTTCTGATGACGTGTTACAACTTTTTCGAGAAGTGGAATAAGAAATATAAATGGCTGCCGTCCCACCGCTGGACACCCAGTCTCGCTATTGTGATCTCATTCCATTTCg  >  1:34312/1‑139 (MQ=255)
                                                                                                                                   cAATATATCATTTACGGCCTCTATCACGCCGTTCTGATGACGTGTTACAACTTTTTCGAGAAGTGGAATAAGAAATATAAATGGCTGCCGTCCAACCGCTGGACAACCATTCTCGCTATTGTGATCACATTCCATTTCg  >  7:325442/1‑139 (MQ=255)
                                                                                                                                       |                                                                                                                                      
GAGATTATGTGTTTATGAGATTCGTATTTTGGATGACTAAGAAAAAGTGGATCAAAAACCGTATGGCCGTCTCAAACATCGGGTATTTCCTGCTGTTTATGCTGATGGGGGTTTGGCACGGGCTCGCGCCGCAATATATCATTTACGGCCTCTATCACGCCGTTCTGATGACGTGTTACAACTTTTTCGAGAAGTGGAATAAGAAATATAAATGGCTGCCGTCCAACCGCTGGACAACCATTCTCGCTATTGTGATCACATTCCATTTCG  >  CP006881/3772500‑3772769

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A