Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A0 F0 I1 R1 113 306.8 9564096 98.5% 9420634 150.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA CP006881 3,723,045 T→C intergenic (‑159/‑142) U712_19190 ← / → U712_19195 PTS system sucrose‑specific EIIBC component/putative transporter ywcJ

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0068813,723,0450TC100.0% 899.2 / NA 235intergenic (‑159/‑142)U712_19190/U712_19195PTS system sucrose‑specific EIIBC component/putative transporter ywcJ
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (116/119);  total (116/119)

Only 100 of 235 total aligned reads displayed.

CTTTTATTTAAACAAAAAAGACCTAAAATTCGCCAACGAATAAAGGACACAGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTGAGAATACGCTTTCATCATAAATTATGATAGCGTTTTCGTCAACT‑GTTTT‑T‑TAGTTAAATAGTTTGATAAAACTTTTAGACAAAAATTCGTAAAAACTATTTGTGAAAAACTTCACAATATCGTGCTATACTATGCTCAACCATCAAAGAAAGCAGGAAAAAACAATGG  >  CP006881/3722899‑3723190
                                                                                                                                                  |                                                                                                                                                    
cTTTTATTTAAACAAAAAAGACCTAAAATTCGCCAACGAATAAAGGACACAGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATg                                                                                                                                                   >  1:86663/1‑150 (MQ=255)
cTTTTATTTAAACAAAAAAGACCTAAAATTCGCCAACGAATAAAGGACACAGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATg                                                                                                                                                   >  2:3289434/1‑150 (MQ=255)
 ttttATTTAAACAAAAAAGACCTAAAATTCGCCAACGAATAAAGGACACAGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGa                                                                                                                                                  >  1:331628/1‑150 (MQ=255)
   ttatttaAACAAAAAAGACCTAAAATTCGCCAACGAATAAAGGACACAGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATa                                                                                                                                                <  2:2904660/150‑1 (MQ=255)
       ttaAACAAAAAAGACCTAAAATTCGCCAACGAATAAAGGACACAGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGt                                                                                                                                            <  1:4399740/150‑1 (MQ=255)
       ttaAACAAAAAAGACCTAAAATTCGCCAACGAATAAAGGACACAGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGt                                                                                                                                            >  1:1691681/1‑150 (MQ=255)
        taAACACAAAAGACGTATAATTCGCCAACGAATAAAGGACACAGCGATCCTTGTGCATGTACGCATATTTTAGGTCTTGGCTGCTTTACCAGTCACAATGCGGCTTATTCAGAATAAGAATACGCTTTCATCATAAATCCTGATAGCGtt                                                                                                                                           <  2:3504719/150‑1 (MQ=255)
        taAACAAAAAAGACCTAAAATTCGCCAACGAATAAAGAACACAGCGGTCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCATTACCACTCACAATCCCACTTATTCAGCATAAGAATAAGCTTTCATCATAAATCAAGATAGCGtt                                                                                                                                           >  1:4533280/1‑150 (MQ=255)
          aaCAAAAAAGACCTAAAGTACGCCATCGAATGAAGGACACAGCCATCCTCTTTCATTTACGCAAACTTTAGGTCTTGCCTGCTTTACCAGGCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGtttt                                                                                                                                         <  2:323101/150‑1 (MQ=255)
          aaCAAAAAAGACCTAAAATTCGCCAACGAATAAAGGACACAGGGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGtttt                                                                                                                                         <  2:241573/150‑1 (MQ=255)
             aaaaaaGACCTAAAATTCGCCAACGAATAAAGGACACAGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGt                                                                                                                                      >  2:870605/1‑150 (MQ=255)
               aaaaGACCTAAAATTCGCCAACGAATAAAGGACACAGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCa                                                                                                                                    <  2:3763821/150‑1 (MQ=255)
                 aaGACCTAAAATTCGCCAACGAATAAAGGACACAGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAc                                                                                                                                  <  2:3054394/150‑1 (MQ=255)
                 aaGACCTAAAATTCGCCAACGAATAAAGGACACAGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAc                                                                                                                                  <  2:429642/150‑1 (MQ=255)
                  aGACCTAAAATTCGCCAACGAATAAAGGACACAGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACt                                                                                                                                 >  2:4042366/1‑150 (MQ=255)
                    aCCTAAAATTCGCCAACGAATAAAGGACACAGCGATCCTTTTTCATTTCCGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAcaat                                                                                                                               <  1:3856562/150‑4 (MQ=255)
                    aCCTAAAATTCGCCAACGAATAAAGGACACAGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACtat                                                                                                                               >  2:1383657/1‑148 (MQ=255)
                       tAAAATTCGCCAACGAATAAAGGACACAGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACT‑Atttt                                                                                                                           >  2:894723/1‑150 (MQ=255)
                       tAAAATTCGCCAACGAATAAAGGACACAGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACT‑Atttt                                                                                                                           <  2:4369318/150‑1 (MQ=255)
                        aaaaTTCGCCAACGAATAAAGGACACAGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAAAACGCTTTCATCATAAAACATGATAGCGTTTTCGTCAACT‑Atttt‑t                                                                                                                         >  1:4359606/1‑150 (MQ=255)
                        aaaaTTCGCCAACGAATAAAGGACACAGCGATCCTTTCTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACT‑Atttt‑t                                                                                                                         <  1:1778062/150‑1 (MQ=255)
                         aaaTTCGCCAACGAATAAAGGACACAGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACT‑Atttt‑t‑t                                                                                                                       <  1:936038/150‑1 (MQ=255)
                          aaTTCGCCAACGAATAAAGGACACAGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACT‑Atttt‑t‑tt                                                                                                                      <  2:2051834/150‑2 (MQ=255)
                           aTTCGCCAACGAATAAAGGACACAGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACT‑Atttt‑t‑tta                                                                                                                     >  1:312667/1‑148 (MQ=255)
                           aTTCGCCAACGAATAAAGGACACAGCGATCCTTTTTCATTTACGCAAATTTTAGGGCTTGCCTGCTTTACCAGTCACAATCGCGCTTATTCAGATTAAGAATACGCTTTCATCATAAAACATGATAGCGTTTTCGTCAACT‑Atttt‑t‑tta                                                                                                                     <  2:11845/150‑3 (MQ=255)
                            ttCGCCAACGAATAAAGGACACAGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATTGCGTTTTCGTCAACT‑Atttt‑t‑ttag                                                                                                                    >  2:4427466/1‑147 (MQ=255)
                            ttCGCCAACGAATAAAGGACACAGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTGTTCGTCAACT‑Atttt‑t‑ttag                                                                                                                    >  2:3114614/1‑147 (MQ=255)
                             tCGCCAACGAATAAAGGACACAGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACT‑Atttt‑t‑ttagt                                                                                                                   >  1:2917955/1‑146 (MQ=255)
                              cGCCAACGAATAAAGGACACAGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACT‑Atttt‑t‑ttagtt                                                                                                                  >  2:3666719/1‑145 (MQ=255)
                              cGCCAACGAATAAAGGACACAGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACT‑Atttt‑t‑ttagtt                                                                                                                  <  2:2174078/150‑6 (MQ=255)
                              cGCCAACGAATAAAGGACACAGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACT‑Atttt‑t‑ttagtt                                                                                                                  >  1:4092442/1‑145 (MQ=255)
                               gCCAACGAATAAAGGACACAGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAGATCATGATAGCGTTTTCGTCAACTATTTTT‑T‑TAGTTa                                                                                                                  >  2:923777/1‑150 (MQ=255)
                                ccAACGAATAAAGGACACAGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGAGTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATTTTT‑T‑TAGTTaa                                                                                                                 <  2:4323691/150‑1 (MQ=255)
                                 cAACGAATAAAGGACACAGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATTTTT‑T‑TAGTTaaa                                                                                                                >  1:4567573/1‑150 (MQ=255)
                                  aaCGAATAAAGGACACAGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATTTTT‑T‑TAGTTAAAt                                                                                                               <  2:110799/150‑1 (MQ=255)
                                    cGAATAAAGGACACAGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATTTTT‑T‑TAGTTAAATAg                                                                                                             >  1:2585425/1‑150 (MQ=255)
                                      aaTAAAGGACACAGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATTTTT‑T‑TAGTTAAATAGtt                                                                                                           <  1:3658471/150‑1 (MQ=255)
                                       aTAAAGGACACAGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACT‑ATTTTAT‑TAGTTAAATAGttt                                                                                                          >  1:176200/1‑150 (MQ=255)
                                         aaaGGACACAGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATTTTT‑T‑TAGTTAAATAGTTTGa                                                                                                        >  1:1018435/1‑150 (MQ=255)
                                              acacAGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATTTTT‑T‑TAGTTAAATAGTTTGGTataa                                                                                                   >  2:947649/1‑150 (MQ=255)
                                               cacaGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATTTTT‑T‑TAGTTAAATAGTTTGAtgtaac                                                                                                  >  1:1897107/1‑145 (MQ=255)
                                                 caGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATTTTT‑T‑TAGTTAAATAGTTTGATATAAcat                                                                                                >  2:1939870/1‑148 (MQ=255)
                                                 caGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATTTTT‑T‑TAGTTAAATAGTTTGATATAAcat                                                                                                <  1:1457393/150‑3 (MQ=255)
                                                 caGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATTTTT‑T‑TAGTTAAATAGTTTGATATAAcat                                                                                                <  2:1654287/150‑3 (MQ=255)
                                                 caGCGATCCTTTTTCATTTACGCAAATTTTAGGCCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTACATCATAAATCATGAAAGCGTTTTCGTCAACTATTTTT‑T‑TAGTTAAATAGTTTGATATAAcat                                                                                                <  1:2705200/150‑3 (MQ=255)
                                                   gCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATTTTT‑T‑TAGTTAAATAGTTTGATATAAcatgt                                                                                              >  1:4182828/1‑146 (MQ=255)
                                                   gCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATTTTT‑T‑TAGTTAAATAGTTTGATATAAcatgt                                                                                              <  1:4715145/150‑5 (MQ=255)
                                                     gATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATTTTT‑T‑TAGTTAAATAGTTTGATATAACATGTAg                                                                                            >  2:340084/1‑150 (MQ=255)
                                                      aTCCCTTTCCCTTTACGCAAATTTTGGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATTTTT‑T‑TAGTTAAATAGTTTGATATAACATGTAGa                                                                                           <  1:3659920/150‑1 (MQ=255)
                                                          tttttCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAAAACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATTTTT‑T‑TAGTTAAATAGTTTGATATAACATGTAGACaaa                                                                                       >  2:1580802/1‑150 (MQ=255)
                                                              tCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATTTTT‑T‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAAtt                                                                                   <  2:807090/150‑1 (MQ=255)
                                                                   tACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATTTTT‑T‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTaa                                                                              >  1:3569936/1‑150 (MQ=255)
                                                                    aCGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATTTTT‑T‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTaaa                                                                             >  2:3033213/1‑150 (MQ=255)
                                                                     cGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATTTTT‑T‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTaaaa                                                                            >  2:1836244/1‑150 (MQ=255)
                                                                     cGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATTTTT‑T‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTaaaa                                                                            <  2:1203649/150‑1 (MQ=255)
                                                                      gCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATTTTT‑T‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTaaaaa                                                                           >  1:2637848/1‑150 (MQ=255)
                                                                       cAAATTTTAGGTCTTGCCTGCTTTACCAGTCACATTCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATTTTT‑T‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTaaaaat                                                                          <  2:3902526/150‑2 (MQ=255)
                                                                          aTTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATTTTT‑T‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTaa                                                                       >  2:1215024/1‑149 (MQ=255)
                                                                           ttttAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATTTTT‑T‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTaat                                                                      <  2:1533664/150‑3 (MQ=255)
                                                                            tttAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTCCATCATAAATCATGATAGCGTTTTCGTCAACTATTTTT‑T‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAaattaatt                                                                     <  1:1258087/150‑1 (MQ=255)
                                                                                   cTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATTTTT‑T‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGaaat                                                              <  1:3915513/150‑2 (MQ=255)
                                                                                   cTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATTTTT‑T‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGaaat                                                              >  1:2119312/1‑149 (MQ=255)
                                                                                   cTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATTTTT‑T‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGaaat                                                              >  1:226402/1‑149 (MQ=255)
                                                                                    ttGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATCATAGCGTTTTCGTCAACTATTTTT‑T‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGaaata                                                             >  1:974442/1‑148 (MQ=255)
                                                                                    ttGCCTGCTTTACCAGTCACAATCCCGCTAATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATTTTT‑T‑TAGTTAAATAGTTTGAAATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGaaata                                                             >  1:205700/1‑148 (MQ=255)
                                                                                         tGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATTTTT‑T‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTca                                                        >  1:2293857/1‑150 (MQ=255)
                                                                                           ccttACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGCCAACTATTTTT‑T‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTcaca                                                      <  1:1106963/148‑1 (MQ=255)
                                                                                              tACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATTTTT‑T‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                                   >  2:4686766/1‑150 (MQ=255)
                                                                                               aCCAGTCACTATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATTTTT‑T‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAACTAATTGTGAAATACTTCACAatat                                                  >  1:411495/1‑150 (MQ=255)
                                                                                                 cAGTCACAATCCCGCTTATTCAGAGTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTCCGTCAACTATTTTT‑T‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCg                                                <  2:2979081/150‑1 (MQ=255)
                                                                                                    tCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATTTTT‑T‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGc                                             >  1:1493651/1‑150 (MQ=255)
                                                                                                    tCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATTTTT‑T‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGc                                             >  1:4053126/1‑150 (MQ=255)
                                                                                                     cacaATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATTTTT‑T‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCt                                            >  1:3776724/1‑150 (MQ=255)
                                                                                                        aaTCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACT‑ATTTT‑TGTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCtata                                         <  2:1817406/150‑1 (MQ=255)
                                                                                                         aTCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATTTTT‑T‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATAc                                        >  2:3594332/1‑150 (MQ=255)
                                                                                                             cGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATTTTT‑T‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATg                                    >  1:3612270/1‑150 (MQ=255)
                                                                                                             cGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATTTTT‑T‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATg                                    >  2:1966343/1‑150 (MQ=255)
                                                                                                                ttATTCAGATTAAGAATACGCTTTCATCATAAAGCATGACAGGGCTTCCGTCAACTATTTTT‑T‑TAGATAAATAGGTTGATATAACATGTAGTCAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTc                                 <  2:1876169/150‑1 (MQ=255)
                                                                                                                   ttCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATTTTT‑T‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCaat                              <  1:1173298/150‑2 (MQ=255)
                                                                                                                      aGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATTTTT‑T‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCAt                           >  1:4420547/1‑150 (MQ=255)
                                                                                                                        aTTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATTTTT‑T‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCAtga                         >  2:2282790/1‑148 (MQ=255)
                                                                                                                         ttaagaATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATTTTT‑T‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGaa                        <  2:1376472/147‑1 (MQ=255)
                                                                                                                          taagaATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATTTTT‑T‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGaaa                       >  2:1321097/3‑150 (MQ=255)
                                                                                                                            agaATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATTTTT‑T‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGaaaga                     >  2:213480/1‑150 (MQ=255)
                                                                                                                              aaTACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATTTTT‑T‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATgaaagaaa                   >  2:3994012/1‑150 (MQ=255)
                                                                                                                               aTACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATTTTT‑T‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGaaagaaag                  >  2:1035598/1‑150 (MQ=255)
                                                                                                                               aTACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATTTTT‑T‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGaaagaaag                  >  2:3723209/1‑150 (MQ=255)
                                                                                                                                 aCGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATTTTT‑T‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGGTCAATCATGaaagaaagga                >  2:4194424/1‑148 (MQ=255)
                                                                                                                                 aCGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATTTTT‑T‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCa                <  2:1691681/150‑1 (MQ=255)
                                                                                                                                   gCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATTTTT‑T‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAgg              <  1:4212804/150‑1 (MQ=255)
                                                                                                                                   gCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATTTTT‑T‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAgg              >  2:4549071/1‑150 (MQ=255)
                                                                                                                                      ttCATCATAAATCATGATAGCGTTTTCGTCAACTATTTTT‑T‑TAGTTAAATAGTTTGATATAACATGTAGACAAAACTTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGaaa           <  2:1677160/150‑1 (MQ=255)
                                                                                                                                       tcatcaTAAATCATGATAGCGTTTTCGTCAACTATTTTT‑T‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGaaaa          <  1:3685308/150‑1 (MQ=255)
                                                                                                                                         atcatAAATCATGATAGCGTTTTCGTCAACTATTTTT‑T‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGaaaaga        >  2:2554397/1‑148 (MQ=255)
                                                                                                                                           catAAATCATGATAGCGTTTTCGTCAACTATTTTT‑T‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGGTCAATCATGAAAGAAAGCAGGAAAAGACa      >  1:399116/1‑150 (MQ=255)
                                                                                                                                           catAAATCATGATAGCGTTTTCGTCAACTATTTTT‑T‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGAAAAGACa      <  1:2787190/150‑1 (MQ=255)
                                                                                                                                            atAAATCATGATAGCGTTTTCGTCAACTATTTTT‑T‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGAAAAGACaa     >  1:645603/1‑150 (MQ=255)
                                                                                                                                             tAAATCATGATATCGTTTTCGTCAACTATTTTT‑T‑TAGTTAAATAGTTTGATATAACATTTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCACAATCATGAAAGAAAGCAGGAAAAGACAAt    <  1:3498688/150‑1 (MQ=255)
                                                                                                                                             tAAATCATGATAGCGTTTTCGTCAACTATTTTT‑T‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGAAAAGACAAt    >  2:3801334/1‑150 (MQ=255)
                                                                                                                                              aaaTCATGATAGCGTTTTCGTCAACTATTTTT‑T‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGAAAAGACAATg   <  1:289156/150‑1 (MQ=255)
                                                                                                                                                  |                                                                                                                                                    
CTTTTATTTAAACAAAAAAGACCTAAAATTCGCCAACGAATAAAGGACACAGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTGAGAATACGCTTTCATCATAAATTATGATAGCGTTTTCGTCAACT‑GTTTT‑T‑TAGTTAAATAGTTTGATAAAACTTTTAGACAAAAATTCGTAAAAACTATTTGTGAAAAACTTCACAATATCGTGCTATACTATGCTCAACCATCAAAGAAAGCAGGAAAAAACAATGG  >  CP006881/3722899‑3723190

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A