Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A28 F56 I1 R1	120	79.0	2973134	95.3%	2833396	126.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	CP006881	3,723,045	T→C	intergenic (‑159/‑142)	U712_19190 ← / → U712_19195	PTS system sucrose‑specific EIIBC component/putative transporter ywcJ

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP006881	3,723,045	0	T	C	99.0%	370.2 / NA	99	intergenic (‑159/‑142)	U712_19190/U712_19195	PTS system sucrose‑specific EIIBC component/putative transporter ywcJ
Reads supporting (aligned to +/- strand): ref base T (0/0); major base C (42/56); minor base A (0/1); total (42/57)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

ACAAAAAAGACCTAAAATTCGCCAACGAATAAAGGACACAGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTGAGAATACGCTTTCATCATAAATTATGATAGCGTTTTCGTCAACT‑GT‑T‑TTT‑TAGTTAAATAGTTTGATAAAACTTTTAGACAAAAATTCGTAAAAACTATTTGTGAAAAACTTCACAATATCGTGCTATACTATGCTCAACCATCAAAGAAAGCAG  >  CP006881/3722910‑3723177

aCAAAAAAGACCTAAAATTCGCCAACGAATAAAGGACACAGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCAt                                                                                                                                        >  5:97374/1‑138 (MQ=255)

aCAAAAAAGACCTAAAATTCGCCAACGAATAAAGGACACAGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCAt                                                                                                                                        >  1:305959/1‑138 (MQ=255)

aCAAAAAAGACCTAAAATTCGCCAACGAATAAAGGACACAGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCAGAAATCAt                                                                                                                                        >  8:267754/1‑138 (MQ=255)

aCAAAAAAGACCTAAAATTCGCCAACGAATAAAGGACACAGCGATCCTTCTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCAt                                                                                                                                        >  5:356389/1‑138 (MQ=255)

 cAAAAAAGACCTAAAATTCGCCAACGAATAAAGGACACAGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGa                                                                                                                                      <  6:315455/139‑1 (MQ=255)

   aaaaaGACCTAAAATTCGCCAACGAATAAAGGACACAGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATa                                                                                                                                    <  7:187094/139‑1 (MQ=255)

   aaaaaGACCTAAAATTCGCCAACGAATAAAGGACACAGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATa                                                                                                                                    <  4:315222/139‑1 (MQ=255)

    aaaaGACCTAAAATTCGCCAACGAATAAAGGACACAGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAg                                                                                                                                   >  2:165625/1‑139 (MQ=255)

    aaaaGACCTAAAATTCGCCAACGAATAAAGGACACAGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAg                                                                                                                                   >  6:357198/1‑139 (MQ=255)

                 ttCGCCAACGAATAAAGGACACAGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAc                                                                                                                      <  6:149840/139‑1 (MQ=255)

                                 ggACACAGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATT‑T‑TTT‑TAGTTaaa                                                                                                   <  5:357198/139‑1 (MQ=255)

                                 ggACACAGCGATCCTTCTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATT‑T‑TTT‑TAGTTaaa                                                                                                   <  6:356389/139‑1 (MQ=255)

                                    cacaGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGATTATTCAGATTAAGAATACGCTTTCATCATAAATCATTATAGCGTATTCGTCAACT‑AT‑TATTT‑TATTTAAATAg                                                                                                >  2:278359/1‑139 (MQ=255)

                                     acaGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATT‑T‑TTT‑TAGTTAAATAGt                                                                                               <  6:97374/139‑1 (MQ=255)

                                     acaGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATT‑T‑TTT‑TAGTTAAATAGt                                                                                               <  2:360778/139‑1 (MQ=255)

                                     acaGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATT‑T‑TTT‑TAGTTAAATAGt                                                                                               >  3:327794/1‑139 (MQ=255)

                                     acaGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATT‑T‑TTT‑TAGTTAAATAGt                                                                                               >  2:107999/1‑139 (MQ=255)

                                     acaGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATT‑T‑TTT‑TAGTTAAATAGt                                                                                               <  4:327794/139‑1 (MQ=255)

                                     acaGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATT‑T‑TTT‑TAGTTAAATAGt                                                                                               >  1:360778/1‑139 (MQ=255)

                                     acaGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATT‑T‑TTT‑TAGTTAAATAGt                                                                                               >  5:83431/1‑139 (MQ=255)

                                     acaGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATT‑T‑TTT‑TAGTTAAATAGt                                                                                               <  5:61796/139‑1 (MQ=255)

                                     acaGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATT‑T‑TTT‑TAGTTAAATAGt                                                                                               >  5:364596/1‑139 (MQ=255)

                                     acaGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCACTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATT‑T‑TTT‑TAGTTAAATAGt                                                                                               >  3:92503/1‑139 (MQ=255)

                                       aGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATT‑T‑TTT‑TAGTTAAATAGttt                                                                                             >  2:123563/1‑139 (MQ=255)

                                       aGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATT‑T‑TTT‑TAGTTAAATAGttt                                                                                             >  8:100576/1‑139 (MQ=255)

                                          gATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATT‑T‑TTT‑TAGTTAAATAGTTTGAt                                                                                          <  8:281056/139‑1 (MQ=255)

                                           aTCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATT‑T‑TTT‑TAGTTAAATAGTTTGATa                                                                                         >  4:45070/1‑139 (MQ=255)

                                            tgcTTTTTCATTTAAGCAAATTTTAGGTCTTGCCAGCTTTACCAGTCACAATGACGCTTATTAAGATTAAGAATACGCTTTCATCATACATCATGATAGCGTTTTCGTCAACTATT‑T‑TTT‑TAGTTAAATAGTTTGATat                                                                                        <  2:145430/137‑2 (MQ=255)

                                            tCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATT‑T‑TTT‑TAGTTAAATAGTTTGATat                                                                                        <  8:355930/139‑2 (MQ=255)

                                            tCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATT‑T‑TTT‑TAGTTAAATAGTTTGATa                                                                                         >  2:69233/1‑138 (MQ=255)

                                                 tttCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATT‑T‑TTT‑TAGTTAAATAGTTTGATATAAcat                                                                                   >  7:341688/1‑137 (MQ=255)

                                                 tttCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATT‑T‑TTT‑TAGTTAAATAGTTTGATATAAcat                                                                                   >  4:164042/1‑137 (MQ=255)

                                                    cATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATT‑T‑TTT‑TAGTTAAATAGTTTGATATAAcatgt                                                                                 <  4:355052/138‑5 (MQ=255)

                                                        tACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATT‑T‑TTT‑TAGTTAAATAGt                                                                                               >  4:80598/1‑120 (MQ=255)

                                                        tACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATT‑T‑TTT‑TAGTTAAATAGt                                                                                               <  3:80598/120‑1 (MQ=255)

                                                                         ttGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATT‑T‑TTT‑TAGTTAAATAGtt                                                                                              <  2:75333/104‑1 (MQ=255)

                                                                         ttGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATT‑T‑TTT‑TAGTTAAATAGtt                                                                                              >  1:75333/1‑104 (MQ=255)

                                                                           gCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTc                                                                                                                            <  6:34961/75‑1 (MQ=255)

                                                                           gCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTc                                                                                                                            >  5:34961/1‑75 (MQ=255)

                                                                           gCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATT‑T‑TTT‑TAGTTAAATATTTTTATATAAAATGTAGACAAAAATTCGTAAAAATTaat                                                         >  6:207002/1‑137 (MQ=255)

                                                                           gCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATT‑T‑TTT‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTaat                                                         >  5:81845/1‑137 (MQ=255)

                                                                           gCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATT‑T‑TTT‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTaa                                                          <  6:132669/138‑2 (MQ=255)

                                                                           gCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATT‑T‑TTT‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTaa                                                          <  8:124217/138‑2 (MQ=255)

                                                                           gCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATT‑T‑TTT‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTaa                                                          <  1:123563/138‑2 (MQ=255)

                                                                           gCCTGCTTTACAAGTCACAATCCCGCTAATTCAGATTAAGAATACGCTTTCATCATAAATCATGATACCGTTTTCGTCAACT‑ATAT‑TAT‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTaat                                                         >  4:218361/1‑137 (MQ=255)

                                                                           gCCTGCGTTACCAGTCACAATCCCGCTTAATCAGAATAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATT‑T‑TTT‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAAATCGTaaaaataaa                                                          <  2:342391/138‑5 (MQ=255)

                                                                                cTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATT‑T‑TTT‑TAGTTAAATAGTTTTATATAACATGTAGACAAAAATTCGTAAAAATTAATtgtg                                                     >  3:193839/1‑138 (MQ=255)

                                                                                cTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATT‑T‑TTT‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATtgtg                                                     <  5:157871/138‑1 (MQ=255)

                                                                                cTTTACCAGTCACAATCCCGCATATTCAGATTAAGAATAAGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATT‑T‑TTT‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATtgtg                                                     <  2:129027/138‑1 (MQ=255)

                                                                                   tACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATT‑T‑TTT‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGaa                                                   <  5:28321/137‑1 (MQ=255)

                                                                                   tACCAGTCACAATCCCGCATATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATT‑T‑TTT‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGaaa                                                  <  6:28021/138‑1 (MQ=255)

                                                                                     ccAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATT‑T‑TTT‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGaaata                                                <  7:253747/138‑3 (MQ=255)

                                                                                        gTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATT‑T‑TTT‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACtt                                             >  8:304629/1‑138 (MQ=255)

                                                                                         tCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATT‑T‑TTT‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTca                                           <  4:352789/139‑1 (MQ=255)

                                                                                         tCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATT‑T‑TTT‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTca                                           <  5:255628/139‑1 (MQ=255)

                                                                                          cacaATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATT‑T‑TTT‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTca                                           >  1:134043/1‑138 (MQ=255)

                                                                                          cacaATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACT‑AT‑T‑TTTATAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATAGTGAAATACtttc                                           >  6:255628/1‑136 (MQ=255)

                                                                                           acaATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATT‑T‑TTT‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTcaca                                         <  8:64825/139‑1 (MQ=255)

                                                                                              aTCCCGCTTATTCAGATTAAGACTACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATT‑T‑TTT‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                      <  6:338324/139‑1 (MQ=255)

                                                                                              aTCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATT‑T‑TTT‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                      <  7:100576/139‑1 (MQ=255)

                                                                                              aTCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATT‑T‑TTT‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                      <  1:107999/139‑1 (MQ=255)

                                                                                              aTCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATT‑T‑TTT‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                      <  1:127838/139‑1 (MQ=255)

                                                                                              aTCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATT‑T‑TTT‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                      <  1:165625/139‑1 (MQ=255)

                                                                                              aTCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATT‑T‑TTT‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                      <  7:310102/139‑1 (MQ=255)

                                                                                              aTCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATT‑T‑TTT‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                      <  7:270484/139‑1 (MQ=255)

                                                                                              aTCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATT‑T‑TTT‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                      <  6:83431/139‑1 (MQ=255)

                                                                                              aTCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATT‑T‑TTT‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                      <  3:164042/139‑1 (MQ=255)

                                                                                              aTCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTATTCGTCAACTATT‑T‑TTT‑TAGTTAAATAGTTTGATATAACATGTATACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                      <  5:264657/139‑1 (MQ=255)

                                                                                              aTCCCGCTTATTCAGATTAAGAATACGCATTCATCATAAATCATGATAGCGTTTTCGTCAACTATT‑T‑TTT‑TAGTTATATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                      <  3:105568/139‑1 (MQ=255)

                                                                                              aTCCCACTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATT‑T‑TTT‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                      <  4:92503/139‑1 (MQ=255)

                                                                                               tCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGAGTTTTCGTCAACTATT‑T‑TTT‑TAGTTAAATAGTTTGATATAACATTTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                      >  1:57595/1‑138 (MQ=255)

                                                                                                 ccGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATT‑T‑TTT‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATc                                    <  2:305959/138‑1 (MQ=255)

                                                                                                 cagCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTAGTCAACTATT‑T‑TTT‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATc                                    <  1:278359/136‑1 (MQ=255)

                                                                                                  cGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATT‑T‑TTT‑TATTTAAATATTTTGATATAACATTTAGACAAAAATACGTAAAAATTAATTGTGATATACTTCACAataaggt                                  >  3:257578/1‑135 (MQ=255)

                                                                                                   gCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATT‑T‑TTT‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                      <  2:263562/134‑1 (MQ=255)

                                                                                                   gCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATT‑T‑TTT‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                      >  1:263562/1‑134 (MQ=255)

                                                                                                   gCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATT‑T‑TTT‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                      >  1:310993/1‑134 (MQ=255)

                                                                                                   gCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATT‑T‑TTT‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                      <  2:310993/134‑1 (MQ=255)

                                                                                                   gCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATT‑T‑TTT‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTg                                 <  8:341688/139‑1 (MQ=255)

                                                                                                   gCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATT‑T‑TTT‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTg                                 <  6:364596/139‑1 (MQ=255)

                                                                                                   gCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATT‑T‑TTT‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTg                                 <  7:304629/139‑1 (MQ=255)

                                                                                                   gCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGGTTTCGTCAACTATT‑T‑TTT‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTg                                 <  6:47472/139‑1 (MQ=255)

                                                                                                    attATTCATATTAAGAATAATATTTCATCATTAATAATGATAGAGTTTTAGTCAACTATT‑T‑TTT‑TAGTTAAATAGTTTGATATAAAATTTAGTCAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTg                                 <  2:134043/137‑1 (MQ=255)

                                                                                                       aTTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATT‑T‑TTT‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCt                               <  1:69233/137‑1 (MQ=255)

                                                                                                        ttCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATT‑T‑TTT‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCtata                            <  4:48731/139‑1 (MQ=255)

                                                                                                           aGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATT‑T‑TTT‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACt                          <  6:81845/138‑1 (MQ=255)

                                                                                                             aTTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATT‑T‑TTT‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGaaata                                                <  7:199013/114‑3 (MQ=255)

                                                                                                             aTTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATT‑T‑TTT‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGaaata                                                <  7:194478/114‑3 (MQ=255)

                                                                                                             aTTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATT‑T‑TTT‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGaaata                                                >  8:194478/1‑112 (MQ=255)

                                                                                                             aTTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATT‑T‑TTT‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGaaata                                                >  8:199013/1‑112 (MQ=255)

                                                                                                             aTTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATT‑T‑TTT‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                      <  2:17858/124‑1 (MQ=255)

                                                                                                             aTTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATT‑T‑TTT‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                      >  1:17858/1‑124 (MQ=255)

                                                                                                             aTTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATT‑T‑TTT‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATg                       >  8:161162/1‑139 (MQ=255)

                                                                                                             aTTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATT‑T‑TTT‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATg                       >  1:87316/1‑139 (MQ=255)

                                                                                                              ttaagaATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATT‑T‑TTT‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGc                      >  3:70744/4‑139 (MQ=255)

                                                                                                                       cGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATT‑T‑TTT‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCAt              >  1:274451/1‑138 (MQ=255)

                                                                                                                       cGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATT‑T‑TTT‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCAt              >  8:138125/1‑138 (MQ=255)

                                                                                                                              atcatAAATCATGATAGCGTTTTCGTCAACTATT‑T‑TTT‑TAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGaaagaa       <  6:328454/138‑1 (MQ=255)

                                                                                                                                  tAAATCATGATAGCGTTTTCGTCAACTATT‑T‑TTT‑TAGTTATTTAGTTTGATATAACATGTAGACAAAAATTCTTAAAAATTAATTGTGATATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAg  >  2:97765/1‑139 (MQ=255)

ACAAAAAAGACCTAAAATTCGCCAACGAATAAAGGACACAGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTGAGAATACGCTTTCATCATAAATTATGATAGCGTTTTCGTCAACT‑GT‑T‑TTT‑TAGTTAAATAGTTTGATAAAACTTTTAGACAAAAATTCGTAAAAACTATTTGTGAAAAACTTCACAATATCGTGCTATACTATGCTCAACCATCAAAGAAAGCAG  >  CP006881/3722910‑3723177

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 14 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A