Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A26 F57 I1 R1 119 93.8 3687158 95.5% 3521235 127.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA CP006881 3,723,045 T→C intergenic (‑159/‑142) U712_19190 ← / → U712_19195 PTS system sucrose‑specific EIIBC component/putative transporter ywcJ

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0068813,723,0450TC98.2% 401.1 / ‑5.7 114intergenic (‑159/‑142)U712_19190/U712_19195PTS system sucrose‑specific EIIBC component/putative transporter ywcJ
Reads supporting (aligned to +/- strand):  ref base T (0/0);  major base C (45/67);  minor base A (2/0);  total (47/67)
Fisher's exact test for biased strand distribution p-value = 1.68e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 114 total aligned reads displayed.

AACAAAAAAGACCTAAAATTCGCCAACGAATAAAGGACACAGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTGAGAATACGCTTTCATCATAAATTATGATAGCGTTTTCGTCAAC‑‑T‑GTT‑TTTTAGTTAAATAGTTTGATAAAACTTTTAGACAAAAATTCGTAAAAACTATTTGTGAAAAACTTCACAATATCGTGCTATACTATGCTCAACCATCAAAGA  >  CP006881/3722909‑3723171
                                                                                                                                        |                                                                                                                                  
aaCAAAAAAGACCTAAAATTCGCCAACGAATAAAGGACACAGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCAt                                                                                                                                  >  4:217091/1‑139 (MQ=255)
          aCCTAAAATTCGCCAACGAATAAAGGACACAGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGttt                                                                                                                        >  1:279471/1‑139 (MQ=255)
          aCCTAAAATTCGCCAACGAATAAAGGACACAGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGttt                                                                                                                        >  1:39457/1‑139 (MQ=255)
             tAAAATTCGCCAACGAATAAAGGACACAGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCTTCATAAATCATGATAGCGTTTTct                                                                                                                     >  7:394960/1‑138 (MQ=255)
             tAAAATTCGCCAACGAATAAAGGACACAGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCg                                                                                                                     >  4:191937/1‑139 (MQ=255)
             tAAAATTCGCCAACGAATAAAGGACACAGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCg                                                                                                                     >  6:368049/1‑139 (MQ=255)
             tAAAATTCGCCAACGAATAAAGGACACAGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCg                                                                                                                     >  6:374105/1‑139 (MQ=255)
               aaaTTCGCCAACGAATAAAGGACACAGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCg                                                                                                                     <  7:217513/137‑1 (MQ=255)
                  ttCCCCAACGAATAAAGGACACAGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAc                                                                                                                <  6:125830/139‑1 (MQ=255)
                       cAACGAATAAAGGACACAGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCa                                                                                                                  >  3:413906/1‑132 (MQ=255)
                       cAACGAATAAAGGACACAGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCa                                                                                                                  <  4:413906/132‑1 (MQ=255)
                          cGAATAAAGGACACAGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑T‑Att‑tttt                                                                                                    >  3:56953/1‑139 (MQ=255)
                                  ggACACAGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATTT‑TTTTAGTTaaa                                                                                             <  4:173960/139‑1 (MQ=255)
                                  ggACACAGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATTT‑TTTTAGTTaaa                                                                                             <  3:216446/139‑1 (MQ=255)
                                  ggACACAGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATTT‑TTTTAGTTaaa                                                                                             <  1:272774/139‑1 (MQ=255)
                                     cacaGCTATCCTTATTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACCATCCCGCATATTCAGATTAACAATACGCTTTCATCATAAATAATGATAGCGTTTTCGTCTAC‑‑TATTT‑TTTTAGTTATATAg                                                                                          >  4:389183/1‑139 (MQ=255)
                                     cacaGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATTT‑TTTTAGTTAAATAg                                                                                          >  5:335179/1‑139 (MQ=255)
                                     cacaGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATTT‑TTTTAGTTAAATAg                                                                                          >  2:333121/1‑139 (MQ=255)
                                     cacaGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATTT‑TTTTAGTTAAATAg                                                                                          >  7:278891/1‑139 (MQ=255)
                                     cacaGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATCATAGCGTTTTCGTCAAC‑‑TATTT‑TTTTAGTTAAATAg                                                                                          >  6:7275/1‑139 (MQ=255)
                                     cacaGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGATTTCTTCTTAAATCATGATAGCGTTTTCGTAAAC‑‑TATTT‑TTTTATTTAAATAg                                                                                          >  8:320698/1‑139 (MQ=255)
                                      acaGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATTT‑TTTTAGTTAAATAGt                                                                                         <  1:226258/139‑1 (MQ=255)
                                      acaGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATTT‑TTTTAGTTAAATAGt                                                                                         <  7:87968/139‑1 (MQ=255)
                                      acaGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATTT‑TTTTAGTTAAATAGt                                                                                         >  7:185643/1‑139 (MQ=255)
                                      acaGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATTT‑TTTTAGTTAAATAGt                                                                                         >  5:26115/1‑139 (MQ=255)
                                       caGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATTT‑TTTTAGTTAAATAGtt                                                                                        <  3:191937/139‑1 (MQ=255)
                                       caGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATTT‑TTTTAGTTAAATAGtt                                                                                        <  2:39457/139‑1 (MQ=255)
                                        aGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATTT‑TTTTAGTTa                                                                                               <  3:31213/131‑1 (MQ=255)
                                        aGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATTT‑TTTTAGTTa                                                                                               >  4:31213/1‑131 (MQ=255)
                                        aGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATTT‑TTTTAGTTAAATAGttt                                                                                       >  8:262309/1‑139 (MQ=255)
                                        aGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTAGCATGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATTT‑TTTTAGTTAAATAGttt                                                                                       >  8:254983/1‑139 (MQ=255)
                                             tCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATTT‑TTTTAGTTAAATAGTTTGATat                                                                                  <  2:279471/139‑2 (MQ=255)
                                             tCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATTT‑TTTTAGTTAAATAGTTTGATat                                                                                  <  3:217091/139‑2 (MQ=255)
                                             tCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATTT‑TTTTAGTTAAATAGTTTGATa                                                                                   >  5:151080/1‑138 (MQ=255)
                                             tCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATTT‑TTTTAGTTAAATAGTTTGATa                                                                                   >  7:238406/1‑138 (MQ=255)
                                             accTTTTACATTTACGCAAATTTTAGGTCTTGCATGCTTTACCAGTCACAATCCCGCATATTCAGATTAAGAATACGCTAACATAATAAATAATTATAGCGTATTCGTCAAC‑‑T‑ATTAATTTAGATAAATATATTGATa                                                                                   >  4:254077/2‑138 (MQ=255)
                                                  tttCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATTT‑TTTTAGTTAAATAGTTTGATATAAcat                                                                             >  3:114113/1‑137 (MQ=255)
                                                   ttCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATTT‑TTTTAGTTAAATAGTTTGATATAAcat                                                                             <  4:450647/138‑3 (MQ=255)
                                                       tttACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATTT‑TTTTAGTTAAATAGTTTGATATAACATGTAGa                                                                        >  8:298773/1‑139 (MQ=255)
                                                                    tAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATTT‑TTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTa                                                            <  1:94151/138‑1 (MQ=255)
                                                                          ttGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATTT‑TTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTaaaaatt                                                      >  3:389541/1‑136 (MQ=255)
                                                                            gCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATTT‑TTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTaaatattaa                                                    <  4:56953/138‑7 (MQ=255)
                                                                              cTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATTT‑TTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATtg                                                 <  1:214423/139‑1 (MQ=255)
                                                                                  tttACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATTT‑TTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGa                                              >  5:116764/1‑138 (MQ=255)
                                                                                      ccAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATTT‑TTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGaaata                                          <  6:432582/138‑3 (MQ=255)
                                                                                      ccAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATTT‑TTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGaaata                                          <  6:151080/138‑3 (MQ=255)
                                                                                         gTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATTT‑TTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACtt                                       >  6:128863/1‑138 (MQ=255)
                                                                                          tCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATTT‑TTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTca                                     <  6:335179/139‑1 (MQ=255)
                                                                                           cacaATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATTT‑TTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGaaata                                          >  2:116741/1‑131 (MQ=255)
                                                                                           cacaATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATTT‑TTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGaaata                                          <  1:116741/133‑3 (MQ=255)
                                                                                           cacaATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATTT‑TTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTca                                     >  6:198536/1‑138 (MQ=255)
                                                                                            acaATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATTT‑TTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTcaca                                   <  6:26115/139‑1 (MQ=255)
                                                                                               ataccGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATTT‑TTTTAGTTAAAAAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                <  8:301596/136‑1 (MQ=255)
                                                                                               aTCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATTT‑TTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                <  5:297080/139‑1 (MQ=255)
                                                                                               aTCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATTT‑TTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                <  4:159238/139‑1 (MQ=255)
                                                                                               aTCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATTT‑TTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                <  2:228189/139‑1 (MQ=255)
                                                                                               aTCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATTT‑TTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                <  7:184119/139‑1 (MQ=255)
                                                                                               aTCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATTT‑TTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                <  4:347627/139‑1 (MQ=255)
                                                                                               aTCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATTT‑TTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                <  6:73875/139‑1 (MQ=255)
                                                                                               aTCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATTT‑TTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                <  5:198536/139‑1 (MQ=255)
                                                                                               aTCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATTT‑TTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                <  3:299924/139‑1 (MQ=255)
                                                                                               aTCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATTT‑TTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                <  5:137632/139‑1 (MQ=255)
                                                                                               aTCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGATTTCGTCAAC‑‑TATTT‑TTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                <  5:389963/139‑1 (MQ=255)
                                                                                               aTCCAGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATTT‑TTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                <  7:196545/139‑1 (MQ=255)
                                                                                                tCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTAT‑TTT‑TTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                <  2:231431/139‑1 (MQ=255)
                                                                                                tCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATTT‑TTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAatat                               <  8:29806/139‑1 (MQ=255)
                                                                                                  ccGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATTT‑TTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATc                              <  4:389541/138‑1 (MQ=255)
                                                                                                  ccGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATTT‑TTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATc                              <  7:254983/138‑1 (MQ=255)
                                                                                                   cGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATTT‑TTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                >  7:110714/1‑135 (MQ=255)
                                                                                                   cGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATTT‑TTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                <  8:110714/135‑1 (MQ=255)
                                                                                                   cGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATTT‑TTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                <  3:228698/135‑1 (MQ=255)
                                                                                                   cGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATTT‑TTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                >  4:228698/1‑135 (MQ=255)
                                                                                                    gCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCATC‑‑TATTT‑TTTTAGTTAAATAGTTTGATATAACATGTAGAGAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTg                           <  3:254077/139‑1 (MQ=255)
                                                                                                    gCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATTT‑TTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTg                           <  8:278891/139‑1 (MQ=255)
                                                                                                    gCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATTT‑TTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTg                           <  1:333121/139‑1 (MQ=255)
                                                                                                    gCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATTT‑TTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTg                           <  4:324505/139‑1 (MQ=255)
                                                                                                    gCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTAAAC‑‑TATTT‑TTTTAGTTAAATAGTTTGATATAACTTGTAGTCAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCTTg                           <  3:389183/139‑1 (MQ=255)
                                                                                                    gCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATCATAGCGTTTTCGTCAAC‑‑TATTT‑TTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTg                           <  5:7275/139‑1 (MQ=255)
                                                                                                    gCTTATTAAGATAAAGAATACGCTTACATCATAAATCATGATAGCGTTTTCGTCAAA‑‑TATTT‑TTTTAGTTAAAAAGTTTGAAATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTg                           <  7:320698/139‑1 (MQ=255)
                                                                                                     cgtATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATTT‑TTTTTGTTAAATAGTTTGATATACCATGTAGCCAAAAATTCGTAAAAATTAATTGTGAAAGACTTCACATTATCGTGc                          >  2:183430/3‑139 (MQ=255)
                                                                                                        aTTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATTT‑TTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTaa                                                    <  6:242644/110‑2 (MQ=255)
                                                                                                        aTTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATTT‑TTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTaa                                                    >  5:242644/1‑109 (MQ=255)
                                                                                                        aTTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATTT‑TTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCta                        <  3:347793/138‑1 (MQ=255)
                                                                                                         ttCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATTT‑TTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCtata                      <  8:185643/139‑1 (MQ=255)
                                                                                                         ttCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATTT‑TTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCtata                      <  5:374105/139‑1 (MQ=255)
                                                                                                         ttCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATTT‑TTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCtata                      <  5:368049/139‑1 (MQ=255)
                                                                                                              aTTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATTT‑TTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                >  7:52470/1‑124 (MQ=255)
                                                                                                                 aagaATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATTT‑TTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCt               <  3:435669/137‑1 (MQ=255)
                                                                                                                   gaATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATTT‑TTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCaa            <  2:375832/139‑1 (MQ=255)
                                                                                                                        cGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACA‑A‑TTT‑TTTTAGTTAAATAGTTTGATATAACATGTAGCCAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCACAATCAt        >  4:90630/1‑138 (MQ=255)
                                                                                                                        cGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATTT‑TTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAatat                               <  1:64815/115‑1 (MQ=255)
                                                                                                                        cGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATTT‑TTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAatat                               >  2:64815/1‑115 (MQ=255)
                                                                                                                        cGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATTT‑TTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                >  3:393415/1‑114 (MQ=255)
                                                                                                                        cGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATTT‑TTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                >  2:262635/1‑114 (MQ=255)
                                                                                                                        cGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATTT‑TTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                <  1:262635/114‑1 (MQ=255)
                                                                                                                        cGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATTT‑TTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                <  4:393415/114‑1 (MQ=255)
                                                                                                                        cGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATTT‑TTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCAt        >  4:361546/1‑138 (MQ=255)
                                                                                                                        cGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATTT‑TTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCAt        >  5:289973/1‑138 (MQ=255)
                                                                                                                              catcatAAATCATGATAGCGTTTTCGTCAAC‑‑TATTT‑TTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGaaaga  >  1:96776/1‑138 (MQ=255)
                                                                                                                              catcatAAATCATGATAGCGTTTTCGTCAAC‑‑TATTT‑TTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGaaaga  >  7:188021/1‑138 (MQ=255)
                                                                                                                                        |                                                                                                                                  
AACAAAAAAGACCTAAAATTCGCCAACGAATAAAGGACACAGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTGAGAATACGCTTTCATCATAAATTATGATAGCGTTTTCGTCAAC‑‑T‑GTT‑TTTTAGTTAAATAGTTTGATAAAACTTTTAGACAAAAATTCGTAAAAACTATTTGTGAAAAACTTCACAATATCGTGCTATACTATGCTCAACCATCAAAGA  >  CP006881/3722909‑3723171

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A