Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A25 F54 I1 R1	119	63.3	2848040	95.5%	2719878	127.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	CP006881	3,723,067	1 bp→AT	intergenic (‑181/‑120)	U712_19190 ← / → U712_19195	PTS system sucrose‑specific EIIBC component/putative transporter ywcJ

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP006881	3,723,066	1	.	A	96.5%	271.2 / 2.2	85	intergenic (‑180/‑121)	U712_19190/U712_19195	PTS system sucrose‑specific EIIBC component/putative transporter ywcJ
Reads supporting (aligned to +/- strand): ref base . (1/2); new base A (40/42); total (41/44)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*	CP006881	3,723,067	0	G	T	96.5%	270.8 / 0.9	85	intergenic (‑181/‑120)	U712_19190/U712_19195	PTS system sucrose‑specific EIIBC component/putative transporter ywcJ
Reads supporting (aligned to +/- strand): ref base G (0/0); major base T (40/42); minor base A (1/2); total (41/44)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.61e-01

CGAATAAAGGACACAGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTGAGAATACGCTTTCATCATAAATTATGATAGCGTTTTCGTCAACT‑GTTTT‑TTAGTTAAATAGTTTGATAAAACTTTTAGACAAAAATTCGTAAAAACTATTTGTGAAAAACTTCACAATATCGTGCTATACTATGCTCAACCATCAAAGAAAGCAGGAAAAAACAATGGAAACTCAAGCATTG  >  CP006881/3722935‑3723204

||

cGAATAAAGGACACAGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACT‑Atttt‑tt                                                                                                                                     <  4:237762/139‑1 (MQ=255)

cGAATAAAGGACACAGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACT‑Atttt‑tt                                                                                                                                     <  5:114016/139‑1 (MQ=255)

        ggACACATCGATACTTTTTCATTTAAGCAAATTTTAGGTCTTGCCTGCTTCACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATTTTT‑TTAGTTaaa                                                                                                                              <  2:154645/139‑1 (MQ=255)

        ggACACAGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATTTTT‑TTAGTTaaa                                                                                                                              <  7:103614/139‑1 (MQ=255)

        ggACACAGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGGGACAATCCCGCTTAGTCAGATTAAGAATACGCTTTCATCATAACTCATGATAGCGTTTTCGTCAACTATTTTT‑TTAGTTaaa                                                                                                                              <  7:256459/139‑1 (MQ=255)

           cacaGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATTTTT‑TTAGTTAAATAg                                                                                                                           >  6:311533/1‑139 (MQ=255)

           cacaGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTAGTCAACTATTTTT‑TTAGTTAAATAg                                                                                                                           >  7:52860/1‑139 (MQ=255)

            acaGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATTTTT‑TTAGTTAAATAGt                                                                                                                          >  7:349649/1‑139 (MQ=255)

             caGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATTTTT‑TTAGTTAAATAGtt                                                                                                                         <  7:292196/139‑1 (MQ=255)

              aGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATTTTT‑TTAGTTAAATAGttt                                                                                                                        >  3:8445/1‑139 (MQ=255)

              aGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATTTTT‑TTAGTTAAATAGttt                                                                                                                        >  1:331774/1‑139 (MQ=255)

              aGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTCACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGATTTCGTCAACTATTTTT‑TTAGTTAAATAGttt                                                                                                                        >  1:154645/1‑139 (MQ=255)

                   tCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATTTTT‑TTAGTTAAATAGTTTGATa                                                                                                                    >  1:284771/1‑138 (MQ=255)

                   tCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATTTTT‑TTAGTTAAATAGTTTGATa                                                                                                                    >  2:119083/1‑138 (MQ=255)

                        tttCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATTTTT‑TTAGTTAAATAGTTTGATATAAcat                                                                                                              >  2:190057/1‑137 (MQ=255)

                                                ttGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATTTTT‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTaaaaatt                                                                                       >  4:192760/1‑136 (MQ=255)

                                                 tGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATTTTT‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTaa                                                                                     >  6:156284/1‑138 (MQ=255)

                                                  gCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAATATTTTT‑TTAGTTAAATAGTTTGATATAACATTTAGACAAAAATTCGTAAAAATTaat                                                                                    >  4:4392/1‑137 (MQ=255)

                                                       cTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATTTTT‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATtgtg                                                                                <  5:311533/138‑1 (MQ=255)

                                                       cTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATTTTT‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATtgtg                                                                                >  6:153615/1‑138 (MQ=255)

                                                          tACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATTTTT‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGaaa                                                                             <  8:107592/138‑1 (MQ=255)

                                                          tACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATTTTT‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGaaa                                                                             <  6:331572/138‑1 (MQ=255)

                                                            ccAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATACATCATGATAGCGTTTTCGTCAACTATTTTT‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGaaata                                                                           <  4:302169/138‑3 (MQ=255)

                                                            ccAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATTTTT‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGaaata                                                                           <  1:93635/138‑3 (MQ=255)

                                                                tCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATTTTT‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTca                                                                      <  7:40396/139‑1 (MQ=255)

                                                                 cacaATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTCTCGTCAACTATTTTT‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTca                                                                      >  5:262224/1‑138 (MQ=255)

                                                                     aTCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATTTTT‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                                                 <  5:156284/139‑1 (MQ=255)

                                                                     aTCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATTTTT‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                                                 <  5:153615/139‑1 (MQ=255)

                                                                     aTCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATTTTT‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                                                 <  3:192760/139‑1 (MQ=255)

                                                                     aTCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATTTTT‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                                                 <  5:218801/139‑1 (MQ=255)

                                                                     aTCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATTTTT‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                                                 <  8:349649/139‑1 (MQ=255)

                                                                     aTCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATTTTT‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                                                 <  2:284771/139‑1 (MQ=255)

                                                                     aTCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATTTTT‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                                                 <  7:3174/139‑1 (MQ=255)

                                                                     aTCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATTTTT‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                                                 <  2:145011/139‑1 (MQ=255)

                                                                     aTCCCGCTTAATCAGATTAAGAATACGCTTTCATCATAAATCCTGATAGCGTTTTCGTCAACTATTTTT‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                                                 <  6:143918/139‑1 (MQ=255)

                                                                     aTCCCGCATATTCAGATTAAGAATACGCTTTCCTCATAAATCATGATAGCGGTTTCGTCAACTATTTTT‑TTAGTTAAATAGTTTGATCTAACATGTAGACAAAAAATCGTAAAAATTAATTGTGAAATACTTCACAata                                                                 <  8:64989/139‑1 (MQ=255)

                                                                        ccGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTCTCGTCAACTATTTTT‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATc                                                               <  6:262224/138‑1 (MQ=255)

                                                                          gCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATTTTT‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTg                                                            >  1:259860/1‑139 (MQ=255)

                                                                          gCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATTTTT‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTg                                                            <  4:8445/139‑1 (MQ=255)

                                                                          gCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATTTTT‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTg                                                            <  2:331774/139‑1 (MQ=255)

                                                                           cTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATTTTT‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGc                                                           >  6:314124/1‑139 (MQ=255)

                                                                              aTTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATTTTT‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCt                                                          <  6:103189/137‑1 (MQ=255)

                                                                              aTTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATTTTT‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCt                                                          <  5:139553/137‑1 (MQ=255)

                                                                               ttCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATTTTT‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCtata                                                       <  1:119083/139‑1 (MQ=255)

                                                                                tCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATTTTT‑TTAGTTAAATAGTTTGATTTAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                                                 >  2:327447/1‑128 (MQ=255)

                                                                                tCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATTTTT‑TTAGTTAAATAGTTTGATTTAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                                                 <  1:327447/128‑1 (MQ=255)

                                                                                tCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATTTTT‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                                                 <  3:285118/128‑1 (MQ=255)

                                                                                tCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATTTTT‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                                                 >  4:285118/1‑128 (MQ=255)

                                                                                    aTTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATTTTT‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                                                 >  1:145258/1‑124 (MQ=255)

                                                                                    aTTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATTTTT‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                                                 <  4:208643/124‑1 (MQ=255)

                                                                                    aTTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATTTTT‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                                                 <  2:80360/124‑1 (MQ=255)

                                                                                    aTTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATTTTT‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                                                 >  1:80360/1‑124 (MQ=255)

                                                                                    aTTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATTTTT‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                                                 >  3:208643/1‑124 (MQ=255)

                                                                                    aTTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATTTTT‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                                                 <  2:145258/124‑1 (MQ=255)

                                                                                    aTTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATTTTT‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATg                                                  >  2:64805/1‑139 (MQ=255)

                                                                                    aTTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCATCAACTATTTTT‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                                                 <  6:80417/124‑1 (MQ=255)

                                                                                    aTTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCATCAACTATTTTT‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTAACAata                                                                 >  5:80417/1‑124 (MQ=255)

                                                                                       aagaATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATTTTT‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCt                                                >  6:234833/2‑138 (MQ=255)

                                                                                         gaATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATTTTT‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGaaata                                                                           <  2:84248/109‑3 (MQ=255)

                                                                                         gaATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATTTTT‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGaaata                                                                           >  1:84248/1‑107 (MQ=255)

                                                                                              cGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATTTTT‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCAt                                         >  1:172388/1‑138 (MQ=255)

                                                                                              cGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATTTTT‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCAt                                         >  5:180191/1‑138 (MQ=255)

                                                                                              cGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATTTTT‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCAt                                         >  1:324275/1‑138 (MQ=255)

                                                                                                    catcatAAATCATGATAGCGTTTTCGTCAACTATTTTT‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGaaaga                                   >  6:74046/1‑138 (MQ=255)

                                                                                                    catcatAAATCATGATAGCGTTTTCGTCAACTATTTTT‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGaaaga                                   >  6:68709/1‑138 (MQ=255)

                                                                                                      tcatAAATCATGATAGCGTTTTCGTCAACTATTTTT‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGaaagaaag                                <  4:124821/139‑1 (MQ=255)

                                                                                                           aaTCATGATAGCGTTTTCGTCAACTATTTTT‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAgg                            >  3:257423/1‑138 (MQ=255)

                                                                                                            atcaTGATAGCGTTTTCGTCAACTATTTTT‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGaa                          <  6:90516/136‑1 (MQ=255)

                                                                                                            atcaTGATAGCGTTTTCGTCAACTATTTTT‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGaa                          <  2:324275/136‑1 (MQ=255)

                                                                                                               aTGATAGCGTTTTCGTCAACTATTTTT‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGaaagaaag                                >  2:55569/1‑130 (MQ=255)

                                                                                                               aTGATAGCGTTTTCGTCAACTATTTTT‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGaaagaaag                                <  1:55569/130‑1 (MQ=255)

                                                                                                               aTGATACCGTTTTCGTCAACT‑ATTTTATTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGAGCTAAACTATGCTCAATCATGAAAGAAAGCAGGaa                          >  8:11269/1‑136 (MQ=255)

                                                                                                                 gATAGCGTTTTCGTCAACTATTTTT‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                                                 >  4:324395/1‑95 (MQ=255)

                                                                                                                 gATAGCGTTTTCGTCAACTATTTTT‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                                                 <  3:324395/95‑1 (MQ=255)

                                                                                                                    aGCGTTTTCGTCAACTATTTTT‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTAAACTATACTCAATCATGAAAGAAAGCAGGAAAAGACAAt                  >  3:106135/1‑139 (MQ=255)

                                                                                                                      cGTTTTCGTCAACTATTTTT‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                                                 >  1:8217/1‑90 (MQ=255)

                                                                                                                      cGTTTTCGTCAACTATTTTT‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                                                 >  1:305910/1‑90 (MQ=255)

                                                                                                                      cGTTTTCGTCAACTATTTTT‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                                                 >  1:310384/1‑90 (MQ=255)

                                                                                                                      cGTTTTCGTCAACTATTTTT‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                                                 <  2:310384/90‑1 (MQ=255)

                                                                                                                      cGTTTTCGTCAACTATTTTT‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                                                 <  2:305910/90‑1 (MQ=255)

                                                                                                                      cGTTTTCGTCAACTATTTTT‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                                                 <  2:8217/90‑1 (MQ=255)

                                                                                                                        ttttCGTCAACTATTTTT‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAACTCAGGAAAAGACACTGGa               >  6:74324/1‑138 (MQ=255)

                                                                                                                        ttttCGTCAACTATTTTT‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGAAAAGACAATGGa               >  8:263894/1‑138 (MQ=255)

                                                                                                                          ttCGTCAACTATTTTT‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACt                                                     <  6:137646/98‑1 (MQ=255)

                                                                                                                          ttCGTCAACTATTTTT‑TTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACt                                                     >  5:137646/1‑98 (MQ=255)

                                                                                                                                 actattttt‑ttAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGAAAAGACAATGGAAACTCAAGCa     <  5:314124/134‑1 (MQ=255)

                                                                                                                                     ttttt‑ttAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGAAAAGACAATGGAAACTCAAGCAtta  >  4:240488/2‑137 (MQ=255)

||

CGAATAAAGGACACAGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTGAGAATACGCTTTCATCATAAATTATGATAGCGTTTTCGTCAACT‑GTTTT‑TTAGTTAAATAGTTTGATAAAACTTTTAGACAAAAATTCGTAAAAACTATTTGTGAAAAACTTCACAATATCGTGCTATACTATGCTCAACCATCAAAGAAAGCAGGAAAAAACAATGGAAACTCAAGCATTG  >  CP006881/3722935‑3723204

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 14 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A