Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A12 F63 I0 R1	227	97.7	3613754	96.1%	3472817	135.9

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
RA	CP009273	3,877,923	A→G	100%	Q24R (CAG→CGG)	rnpA →	protein C5 component of RNase P

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP009273	3,877,923	0	A	G	100.0%	255.6 / NA	73	Q24R (CAG→CGG)	rnpA	protein C5 component of RNase P
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (38/35); total (38/35)
Rejected as polymorphism: Frequency below/above cutoff threshold.
Rejected as polymorphism: Variant not supported by required number of reads on each strand.

CTGGCACGTCGTCGTGCTAAAGGCCGCGCTCGTCTGACCGTTTCTAAGTAATAAAGCTAACCCCTGAGTGGTTAAGCTCGCATTTCCCAGGGAGTTACGCTTGTTAACTCCCAGTCAATTCACATTCGTCTTCCAGCAGCCACAACGGGCTGGCACGCCGCAAATTACCATTCTCGGCCGCCTGAATTCGCTGGGGCATCCCCGTATCGGTCTTACAGTCGCCAAGAAAAACGTTCGACGCGCCCATGAACGCAATCGGATTAAACGTCTGA  >  CP009273/3877786‑3878057

cTGGCACGTCGTCGTGCTAAAGGCCGCGCTCGTCTGACCGTTTCTAAGTAATAAAGCTAACCCCTGAGTGGTTAAGCTCGCATTTCCCAGGGAGTTACGCTTGTTAACTCCCAGTCAATTCACATTCGTCTTCCagcggc                                                                                                                                      >  1:654056/1‑140 (MQ=255)

cTGGCACGTCGTCGTGCTAAAGGCCGCGCTCGTCTGACCGTTTCTAAGTAATAAAGCTAACCCCTGAGTGGTTAAGCTCGCATTTCCCAGGGAGTTACGCTTGTTAACTCCCAGTCAATTCACATTCGTCTTCCagcggc                                                                                                                                      >  1:1481921/1‑140 (MQ=255)

  ggCACGTCGTCGTGCTAAAGGCCGCGCTCGTCTGACCGTTTCTAAGTAATAAAGCTAACCCCTGAGTGGTTAAGCTCGCATTTCCCAGGGAGTTACGCTTGTTAACTCCCAGTCAATTCACATTCGTCTTCCAGCGGCca                                                                                                                                    >  2:1198275/1‑140 (MQ=255)

  ggCACGTCGTCGTGCTAAAGGCCGCGCTCGTCTGACCGTTTCTAAGTAATAAAGCTAACCCCTGAGTGGTTAAGCTCGCATTTCCCAGGGAGTTACGCTTGTTAACTCCCAGTCAATTCACATTCGTCTTCCAGCGGCca                                                                                                                                    >  2:1189647/1‑140 (MQ=255)

     aCGTCGTCGTGCGAAAGGGCGCGATCGTCTGCCCGTTTCTAAGTAATAAAGCTAACCGCTGAGTGGTTAAGCTCGCATTTCCCAGGGAGTTACGCTTGTTAACTCCCAGTCATTTCACATTCGTCTTCCAGCGGCCACaa                                                                                                                                 <  2:1803568/140‑1 (MQ=255)

             gtGCTAAAGGCCGCGCTCGTCTGACCGTTTCTAAGTAATAAAGCTAACCCCTGAGTGGTTAAGCTCGCATTTCCCAGGGAGTTACGCTTGTTAACTCCCAGTCAATTCACATTCGTCTTCCAGCGGCCACAACGGGCTgg                                                                                                                         <  1:1788326/140‑1 (MQ=255)

             gtGCTAAAGGCCGCGCTCGTCTGACCGTTTCTAAGTAATAAAGCTAACCCCTGAGTGGTTAAGCTCGCATTTCCCAGGGAGTTACGCTTGTTAACTCCCAGTCAATTCACATTCGTCTTCCAGCGGCCACAACGGGCTgg                                                                                                                         <  1:1604522/140‑1 (MQ=255)

                     ggCCGCGCTCGTCTGACCGTTTCTAAGTAATAAAGCTAACCCCTGAGTGGTTAAGCTCGCATTTCCCAGGGAGTTACGCTTGTTAACTCCCAGTCAATTCACATTCGTCTTCCAGCGGCCACAACGGGCTGGCAcgccgc                                                                                                                 >  2:1135947/1‑140 (MQ=255)

                      gCCGCGCTCGTCTGACCGTTTCTAAGTAATAAAGCTAACCCCTGAGTGGTTAAGCTCGCATTTCCCAGGGAGTTACGCTTGTTAACTCCCAGTCAATTCACATTCGTCTTCCAGCGGCCACAACGGGCTGGCACGCCGCa                                                                                                                <  1:988259/140‑1 (MQ=255)

                      gCCGCGCTCGTCTGACCGTTTCTAAGTAATAAAGCTAACCCCTGAGTGGTTAAGCTCGCATTTCCCAGGGAGTTACGCTTGTTAACTCCCAGTCAATTCACATTCGTCTTCCAGCGGCCACAACGGGCTGGCACGCCGCa                                                                                                                <  1:235167/140‑1 (MQ=255)

                        cgcgCTCGTCTGACCGTTTCTAAGTAATAAAGCTAACCCCTGAGTGGTTAAGCTCGCATTTCCCAGGGAGTTACGCTTGTTAACTCCCAGTCAATTCACATTCGTCTTCCAGCGGCCACAACGGGCTGGCACGCCGCaaa                                                                                                              >  2:1253310/1‑140 (MQ=255)

                          cgcTCGTCTGACCGTTTCTAAGTAATAAAGCTAACCCCTGAGTGGTTAAGCTCGCATTTCCCAGGGAGTTACGCTTGTTAACTCCCAGTCAATTCACATTCGTCTTCCAGCGGCCACAACGGGCTGGCACGCCGCAAAtt                                                                                                            >  2:139373/1‑140 (MQ=255)

                          cgcTCGTCTGACCGTTTCTAAGTAATAAAGCTAACCCCTGAGTGGTTAAGCTCGCATTTCCCAGGGAGTTACGCTTGTTAACTCCCAGTCAATTCACATTCGTCTTCCAGCGGCCACAACGGGCTGGCACGCCGCAAAtt                                                                                                            >  1:1467188/1‑140 (MQ=255)

                          cgcTCGTCTGACCGTTTCTAAGTAATAAAGCTAACCCCTGAGTGGTTAAGCTCGCATTTCCCAGGGAGTTACGCTTGTTAACTCCCAGTCAATTCACATTCGTCTTCCAGCGGCCACAACGGGCTGGCACGCCGCAAAtt                                                                                                            >  2:717904/1‑140 (MQ=255)

                          cgcTCGTCTGACCGTTTCTAAGTAATAAAGCTAACCCCTGAGTGGTTAAGCTCGCATTTCCCAGGGAGTTACGCTTGTTAACTCCCAGTCAATTCACATTCGTCTTCCAGCGGCCACAACGGGCTGGCACGCCGCAAAtt                                                                                                            >  2:231732/1‑140 (MQ=255)

                          cgcTCGTCTGACCGTTTCTAAGTAATAAAGCTAACCCCTGAGTGGTTAAGCTCGCATTTCCCAGGGAGTTACGCTTGTTAACTCCCAGTCAATTCACATTCGTCTTCCAGCGGCCACAACGGGCTGGCACGCCGCAAAtt                                                                                                            >  2:787374/1‑140 (MQ=255)

                          cgcTCGTCTGACCGTTTCTAAGTAATAAAGCTAACCCCTGAGTGGTTAAGCTCGCATTTCCCAGGGAGTTACGCTTGTTAACTCCCAGTCAATTCACATTCGTCTTCCAGCGGCCACAACGGGCTGGCACGCCGCAAAtt                                                                                                            >  2:1192965/1‑140 (MQ=255)

                          cgcTCGTCTGACCGTTTCTAAGTAATAAAGCTAACCCCTGAGTGGTTAAGCTCGCATTTCCCAGGGAGTTACGCTTGTTAACTCCCAGTCAATTCACATTCGTCTTCCAGCGGCCACAACGGGCTGGCACGCCGCAAAtt                                                                                                            >  2:1038110/1‑140 (MQ=255)

                          cgcTCGTCTGACCGTTTCTAAGTAATAAAGCTAACCCCTGAGTGGTTAAGCTCGCATTTCCCAGGGAGTTACGCTTGTTAACTCCCAGTCAATTCACATTCGTCTTCCAGCGGCCACAACGGGCTGGCACGCCGCAAAtt                                                                                                            >  2:702633/1‑140 (MQ=255)

                                         ttCTAAGTAATAAAGCTAACCCCTGAGTGGTTAAGCTCGCATTTCCCAGGGAGTTACGCTTGTTAACTCCCAGTCAATTCACATTCGTCTTCCAGCGGCCACAACGGGCTGGCACGCCGCAAATTACCATTCTCGgccgc                                                                                             >  1:1415825/1‑140 (MQ=255)

                                         ttCTAAGTAATAAAGCTAACCCCTGAGTGGTTAAGCTCGCATTTCCCAGGGAGTTACGCTTGTTAACTCCCAGTCAATTCACATTCGTCTTCCAGCGGCCACAACGGGCTGGCACGCCGCAAATTACCATTCTCGgccgc                                                                                             >  1:648649/1‑140 (MQ=255)

                                                  ataaAGCTAACCCCTGAGTGGTTAAGCTCGCATTTCCCAGGGAGTTACGCTTGTTAACTCCCAGTCAATTCACATTCGTCTTCCAGCGGCCACAACGGGCTGGCACGCCGCAAATTACCATTCTCGGCCGCCTGAATTCg                                                                                    <  2:1319398/140‑1 (MQ=255)

                                                  ataaACCTAACCCCTGAGTGGTTAAGCTCGCATTTCCGAGGGAGTGACGCTTGTTAACTCCCAGTCAAATCACATTCGTCTTGCAGCGGCCACAACGGGCTGGCACGCCGCAAATTACCATTCTCGGCCGCCTGAATTCg                                                                                    <  2:1762109/140‑1 (MQ=255)

                                                  ataaACCTAACCCCTGAGTGGTTAAGCTCGCATTTCCCAGGGAGTTACGCTTGTTAACTCCCAGTCAATTCACATTCGTCTTCCAGCGGCCACAACGGGCTGGCACGCCGCAAATTACCAGTCTCGGCCGCCTGAATTCg                                                                                    <  2:867388/140‑1 (MQ=255)

                                                   taaAGCTAACCCCTGAGTGGTTAAGCTCGCATTTCCCAGGGAGTTACGCTTGTTAACTCCCAGTCAATTCACATTCGTCTTCCAGCGGCCACAACGGGCTGGCACGCCGCAAATTACCATTCTCGGCCGCCTGAATTCGc                                                                                   >  1:1352989/1‑140 (MQ=255)

                                                   taaAGCTAACCCCTGAGTGGTTAAGCTCGCATTTCCCAGGGAGTTACGCTTGTTAACTCCCAGTCAATTCACATTCGTCTTCCAGCGGCCACAACGGGCTGGCACGCCGCAAATTACCATTCTCGGCCGCCTGAATTCGc                                                                                   <  2:831956/140‑1 (MQ=255)

                                                   taaAGCTAACCCCTGAGTGGTTAAGCTCGCATTTCCCAGGGAGTTACGCTTGTTAACTCCCAGTCAATTCACATTCGTCTTCCAGCGGCCACAACGGGCTGGCACGCCGCAAATTACCATTCTCGGCCGCCTGAATTCGc                                                                                   >  2:508631/1‑140 (MQ=255)

                                                   taaAGCTAACCCCTGAGTGGTTAAGCTCGCATTTCCCAGGGAGTTACGCTTGTTAACTCCCAGTCAATTCACATTCGTCTTCCAGCGGCCACAACGGGCTGGCACGCCGCAAATTACCATTCTCGGCCGCCTGAAGTCGc                                                                                   >  2:1639101/1‑140 (MQ=255)

                                                    aaaGCTAACCCCTGAGTGGTTAAGCTCGCATTTCCCAGGGAGTTACGCTTGTTAACTCCCAGTCAATTCACATTCGTCTTCCAGCGGCCACAACGGGCTGGCACGCCGCAAATTACCATTCTCGGCCGCCTGAATTCGCt                                                                                  <  2:140664/140‑1 (MQ=255)

                                                        cTAACCCCTGAGTGGTTAAGCTCGCATTTCCCAGGGAGTTACGCTTGTTAACTCCCAGTCAATTCACATTCGTCTTCCAGCGGCCACAACGGGCTGGCACGCCGCAAATTACCATTCTCGGCCGCCTGAATTCGCTgggg                                                                              <  1:928944/140‑1 (MQ=255)

                                                          aaCCCCTGAGTGGTTAAGCTCGCATTTCCCAGGGAGTTACGCTTGTTAACTCCCAGTCAATTCACATTCGTCTTCCAGCGGCCACAACGGGCTGGCACGCCGCAAATTACCATTCTCGGCCGCCTGAATTCGCTgggg                                                                              <  2:1640643/138‑1 (MQ=255)

                                                          aaCCCCTGAGTGGTTAAGCTCGCATTTCCCAGGGAGTTACGCTTGTTAACTCCCAGTCAATTCACATTCGTCTTCCAGCGGCCACAACGGGCTGGCACGCCGCAAATTACCATTCTCGGCCGCCTGAATTCGCTgggg                                                                              >  1:1640643/1‑138 (MQ=255)

                                                          aaCCCCTGAGTGGTTAAGCTCGCATTTCCCAGGGAGTTACGCTTGTTAACTCCCAGTCAATTCACATTCGTCTTCCAGCGGCCACAACGGGCTGGCACGCCGCAAATTACCATTCTCGGCCGCCTGAATTCGCTGGGGCa                                                                            >  2:1065088/1‑140 (MQ=255)

                                                          aaCCCCTGAGTGGTTAAGCTCGCATTTCCCAGGGAGTTACGCTTGTTAACTCCCAGTCAATTCACATTCGTCTTCCAGCGGCCACAACGGGCTGGCACGCCGCAAATTACCATTCTCGGCCGCCTGAATTCGCTGGGGCa                                                                            >  2:905656/1‑140 (MQ=255)

                                                          aaCCCCTGAGTGGTTAAGCTCGCATTTCCCAGGGAGTTACGCTTGTTAACTCCCAGTCAATTCACAGTCGTCTTCCAGCGGCCACAACGGGCTGGCACGCCGCACATTACCATTCTCGGCCGCCTGAATTCGCTGGGGCa                                                                            >  2:289561/1‑140 (MQ=255)

                                                           aCCCCTGAGTGGTTAAGCTCGCATTTCCCAGGGAGTTACGCTTGTTAACTCCCAGTCAATTCACATTCGTCTTCCAGCGGCCACAACGGGCTGGCACGCCGCAAATTACCATTCTCGGCCGCCTGAATTCGCTGGGGCAt                                                                           >  1:43716/1‑140 (MQ=255)

                                                           aCCCCTGAGTGGTTAAGCTCGCATTTCCCAGGGAGTTACGCTTGTTAACTCCCAGTCAATTCACATTCGTCTTCCAGCGGCCACAACGGGCTGGCACGCCGCAAATTACCATTCTCGGCCGCCTGAATTCGCTGGGGCAt                                                                           >  1:139264/1‑140 (MQ=255)

                                                           aCCCCTGAGTGGTTAAGCTCGCATTTCCCAGGGAGTTACGCTTGTTAACTCCCAGTCAATTCACATTCGTCTTCCAGCGGCCACAACGGGCTGGCACGCCGCAAATTACCATTCTCGGCCGCCTGAATTCGCTGGGGCAt                                                                           >  1:1378877/1‑140 (MQ=255)

                                                                   gTGGTTAAGCTCGCATTTCCCAGGGAGTTACGCTTGTTAACTCCCAGTCAATTCACATTCGTCTTCCAGCGGCCACAACGGGCTGGCACGCCGCAAATTACCATTCTCGGCCGCCTGAATTCGCTGGGGCATCCCCGTAt                                                                   <  1:678/140‑1 (MQ=255)

                                                                   gTGGTTAAGCTCGCATTTCCCAGGGAGTTACGCTTGTTAACTCCCAGTCAATTCACATTCGTCTTCCAGCGGCCACAACGGGCTGGCACGCCGCAAATTACCATTCTCGGCCGCCTGAATTCGCTGGGGCATCCCCGTAt                                                                   <  1:467589/140‑1 (MQ=255)

                                                                   gTGGTTAAGCTCGCATTTCCCAGGGAGTTACGCTTGTTAACTCCCAGTCAATTCACATTCGTCTTCCAGCGGCCACAACGGGCTGGCACGCCGCAAATTACCATTCTCGGCCGCCTGAATTCGCTGGGGCATCCCCGTAt                                                                   <  1:459285/140‑1 (MQ=255)

                                                                   gTGGTTAAGCTCGCATTTCCCAGGGAGTTACGCTTGTTAACTCCCAGTCAATTCACATTCGTCTTCCAGCGGCCACAACGGGCTGGCACGCCGCAAATTACCATTCTCGGCCGCCTGAATTCGCGGGGGCATCCCCGTAt                                                                   <  2:202823/140‑1 (MQ=255)

                                                                   gTGGTTAAGCTCGCATTTCCCAGCGAGTTACGCTTGTTAACTCCCAGTCAATTCACATTCGTCTTCCAGCGGCCACAACGGGCTGGCACGCCGAAAATTACCATTCTCGGCCGCCTGAATTCGCTGGGGCATCCCCGTAt                                                                   <  1:1160307/140‑1 (MQ=255)

                                                                   gTGGTTAAGCTCGCATGTCCCAGGGAGTCACGCTTGTTAACTCCCAGTCAATTCACATTCGTCTTCCAGCGGCCACAACGGGCTGGCACGCCGCAAATTACCATTCTCGGCCGCCTGAATTCGCTGGGGCATCCCCGTAt                                                                   <  2:1680785/140‑1 (MQ=255)

                                                                   gTGGGTAAGCTCGCATTTCCCAGGGAGTTACGCTTGTTAACTCCCAGTCAATTCACATTCGTCTTCCAGCGGCCACAACGGGCTGGCACGCCGCAAATTACCATTCTCGGCCGCCTGAATTCGCTGGGGCATCCCCGTAt                                                                   <  2:1400037/140‑1 (MQ=255)

                                                                       ttAAGCTCGCATTTCCCAGGGAGTTACGCTTGTTAACTCCCAGTCAATTCACATTCGTCTTCCAGCGGCCACAACGGGCTGGCACGCCGCAAATTACCATTCTCGGCCGCCTGAATTCGCTGGGGCATCCCCGTAt                                                                   <  2:911308/136‑1 (MQ=255)

                                                                       ttAAGCTCGCATTTCCCAGGGAGTTACGCTTGTTAACTCCCAGTCAATTCACATTCGTCTTCCAGCGGCCACAACGGGCTGGCACGCCGCAAATTACCATTCTCGGCCGCCTGAATTCGCTGGGGCATCCCCGTAt                                                                   >  1:911308/1‑136 (MQ=255)

                                                                       ttAAGCTCGCATTTCCCAGGGAGTTACGCTTGTTAACTCCCAGTCAATTCACATTCGTCTTCCAGCGGCCACAACGGGCTGGCACGCCGCAAATTACCATTCTCGGCCGCCTGAATTCGCTGGGGCATCCCCGTATCGGt                                                               >  1:1733610/1‑140 (MQ=255)

                                                                         aaGCTCGCATTTCCCAGGGAGTTACGCTTGTTAACTCCCAGTCAATTCACATTCGTCTTCCAGCGGCCACAACGGGCTGGCACGCCGCAAATTACCATTCTCGGCCGCCTGAATTCGCTGGGGCATCCCCGTATCGGTc                                                              >  1:1405113/1‑139 (MQ=255)

                                                                         aaGCTCGCATTTCCCAGGGAGTTACGCTTGTTAACTCCCAGTCAATTCACATTCGTCTTCCAGCGGCCACAACGGGCTGGCACGCCGCAAATTACCATTCTCGGCCGCCTGAATTCGCTGGGGCATCCCCGTATCGGTc                                                              <  2:1405113/139‑1 (MQ=255)

                                                                            cTCGCATTTCCCAGGGAGTTACGCTTGTTAACTCCCAGTCAATTCACATTCGTCTTCCAGCGGCCACAACGGGCTGGCACGCCGCAAATTACCATTCTCGGCCGCCTGAATTCGCTGGGGCATCCCCGTATCGGTCTTAc                                                          >  1:381971/1‑140 (MQ=255)

                                                                                     cccAGGGAGTTACGCTTGTTAACTCCCAGTCAATTCACATTCGTCTTCCAGCGGCCACAACGGGCTGGCACGCCGCAAATTACCATTCTCGGCCGCCTGAAGTCGCTGGGGCATCCCCGTATCGGTCTTACAGTCGCCaa                                                 >  1:1310696/1‑140 (MQ=255)

                                                                                                    ttGTTAACTCCCAGTCAATTCACATTCGTCTTCCAGCGGCCACAACGGGCTGGCACGCCGCAAATTACCATTCTCGGCCGCCTGAATTCGCTGGGGCATCCCCGTATCGGTCTTACAGTCGCCAAGAAAAACGTTCGAcg                                  <  1:1457507/140‑1 (MQ=255)

                                                                                                    ttGTTAACTCCCAGTCAAGTCACATTCGTCTTCCAGCGGCCACAACGGGCTGGCACGCCGCAAATTACCATTCTCGGCCGCCTGAATTCGCTGGGGCATCCCCGTATCGGTCTTACAGTCGCCAAGAAAAACGTTCGAcg                                  <  1:1457548/140‑1 (MQ=255)

                                                                                                    ttGTTAACTCCCAGTAAATTCACATTCGTCTTCCAGCGGCCACAACGGGCTGGCACGCCGCAAATTCCCATTCTCGGCCGCCTGAATTCGCTGGGGCATCCCCGTATCGGTCTTACAGTCGCCAAGAAAAACGTTCGAcg                                  <  1:468121/140‑1 (MQ=255)

                                                                                                                aGTCAATTCACATTCGTCTTCCAGCGGCCACAACGGGCTGGCACGCCGCAAATTACCATTCTCGGCCGCCTGAATTCGCTGGGGCATCCCCGTATCGGTCTTACAGTCGCCAAGAACAACGTTCGACGCGCCCCTGTACg                      >  1:1662874/1‑140 (MQ=255)

                                                                                                                aGTCAATTCACATTCGTCTTCCAGCGGCCACAACGGGCTGGCACGCCGCAAATTACCATTCTCGGCCGCCTGAATTCGCTGGGGCATCCCCGTATCGGTCTTACAGTCGCCAAGAAAAACGTTCGACGCGCCCATGAACg                      >  2:1535103/1‑140 (MQ=255)

                                                                                                                 gTCAATTCACATTCGTCTTCCAGCGGCCACAACGGGCTGGCACGCCGCAAATTACCATTCTCGGCCGCCTGAATTCGCTGGGGCATCCCCGTATCGGTCTTACAGTCGCCAAGAAAAACGTTCGACGCGCCCATGAACGc                     >  1:1462725/1‑140 (MQ=255)

                                                                                                                    aaTTCACATTCGTCTTCCAGCGGCCACAACGGGCTGGCACGCCGCAAATTACCATTCTCGGCCGCCTGAATTCGCTGGGGCATCCCCGTATCGGTCTTACAGTCGCCAAGAAAAACGTTCGACGCGCCCATGAACGCAAt                  <  1:1192965/140‑1 (MQ=255)

                                                                                                                    aaTTCACATTCGTCTTCCAGCGGCCACAACGGGCTGGCACGCCGCAAATTACCATTCTCGGCCGCCTGAATTCGCTGGGGCATCCCCGTATCGGTCTTACAGTCGCCAAGAAAAACGTTCGACGCGCCCATGAACGCAAt                  <  1:139373/140‑1 (MQ=255)

                                                                                                                    aaTTCACATTCGTCTTCCAGCGGCCACAACGGGCTGGCACGCCGCAAATTACCATTCTCGGCCGCCTGAATTCGCTGGGGCATCCCCGTATCGGTCTTACAGTCGCCAAGAAAAACGTTCGACGCGCCCATGAACGCAAt                  <  1:231732/140‑1 (MQ=255)

                                                                                                                    aaTTCACATTCGTCTTCCAGCGGCCACAACGGGCTGGCACGCCGCAAATTACCATTCTCGGCCGCCTGAATTCGCTGGGGCATCCCCGTATCGGTCTTACAGTCGCCAAGAAAAACGTTCGACGCGCCCATGAACGCAAt                  <  1:1038110/140‑1 (MQ=255)

                                                                                                                    aaTTCACATTCGTCTTCCAGCGGCCACAACGGGCTGGCACGCCGCAAATTACCATTCTCGGCCGCCTGAATTCGCTGGGGCATCCCCGTATCGGTCTTACAGTCGCCAAGAAAAACGTTCGACGCGCCCATGAACGCAAt                  <  1:717904/140‑1 (MQ=255)

                                                                                                                      ttCACATTCGTCTTCCAGCGGCCACAACGGGCTGGCACGCCGCACATTACCATTCTCGGCCGCCTGAATTCGCTGGGGCATCCCCGTATCGGTCTTACAGTCGCCAAGAAAAACGTTCGACGCGCCCATGAACGCACTCg                >  1:838111/1‑140 (MQ=255)

                                                                                                                      ttCACATTCGTCTTCCAGCGGCCACAACGGGCTGGCACGCCGCAAATTACCATTCTCGGCCGCCTGAATTCGCTGGGGCATCCCCGTATCGGTCTTACAGTCGCCAAGAAAAACGTTCGACGCGCCCATGAACGCAATCg                >  2:858256/1‑140 (MQ=255)

                                                                                                                      ttCACATTCGTCTTCCAGCGGCCACAACGGGCTGGCACGCCGCAAATTACCATTCTCGGCCGCCTGAATTCGCTGGGGCATCCCCGTATCGGTCTTACAGTCGCCAAGAAAAACGTTCGACGCGCCCATGAACGCAATCg                >  2:683362/1‑140 (MQ=255)

                                                                                                                        cacaTTCGTCTTCCAGCGGCCACAACGGGCTGGCACGCCGCAAATTACCATTCTCGGCCGCCTGAATTCGCTGGGGCATCCCCGTATCGGTCTTACAGTCGCCAAGAAAAACGTTCGACGCGCCCATGAACGCAATCGGa              >  2:1727645/1‑140 (MQ=255)

                                                                                                                         acaTTCGTCTTCCAGCGGCCACAACGGGCTGGCACGCCGCAAATTACCATTCTCGGCCGCCTGAATTCGCTGGGGCATCCCCGTATCGGTCTTACAGTCGCCAAGAAAAACGTTCGACGCGCCCATGAACGCAATCGGAt             <  2:381971/140‑1 (MQ=255)

                                                                                                                           aTTCGTCTTCCAGCGGCCACAACGGGCTGGCACGCCGCAAATTACCCTTCTCGGCCGCCTGAATTCGCTGGGGCATCCCCGTATCGGTCTTACAGTCGCCAAGAAAAACGTTCGACGCGCCCATGAACGCAATCGGATTa           <  2:1230302/140‑1 (MQ=255)

                                                                                                                           aTTCGTCTTCCAGCGGCCACAACGGGCTGGCACGCCGCAAATTACCATTCTCGGCCGCCTGAATTCGCTGGGGCATCCCCGTATCGGTCTTACAGTCGCCAAGAAAAACGTTCGACGCGCCCATGAACGCAATCGGATTa           <  2:1264290/140‑1 (MQ=255)

                                                                                                                            ttCGTCTTCCAGCGGCCACAACGGGCTGGCACGCCGCAAATTACCATTCTCGGCCGCCTGAATTCGCTGGGGCATCCCCGTCTCGGTCTTACAGTCGCCAAGAAAAACGTTCGACGCGCCCATGAACGCACTCGGATTaa          >  1:1560060/1‑140 (MQ=255)

                                                                                                                            ttCGTCTTCCAGCGGCCACAACGGGCTGGCACGCCGCAAATTACCATTCTCGGCCGCCTGAATTCGCTGGGGCATCCCCGTATCGGTCTTACAGTCGCCAAGAAAAACGTTCGACGCGCCCATGAACGCAATCGGATTaa          >  1:208497/1‑140 (MQ=255)

                                                                                                                                  ttCCAGCGGCCACAACGGGCTGGCACGCCGCAAATGACCATTCTCGGCCGCCTGAATTCGCTGGGGCATCCCCGTATCGGTCTTACAGTCGCCAAGAAAAACGTTCGACGCGCCCATGAACGCAATCGGATTAAACGTCt    <  2:816263/140‑1 (MQ=255)

                                                                                                                                    ccAGCGGCCACAACGGGCTGGCACGCCGCAAATTACCATTCTCGGCCGCCTGAATTCGCTGGGGCATCCCCGTATCGGTCTTACAGTCGCCAAGAAAAACGTTCGACGCGCCCATGAACGCAATCGGATTAAACGTCTGa  <  1:448446/140‑1 (MQ=255)

                                                                                                                                    ccAGCGGCCACAACGGGCTGGCACGCCGCAAATTACCAGTCTCGGCCGCCTGAATTCGCTGGGGCATCCCCGTATCGGTCTTACAGTCGCCAAGAAAAACGTTCGACGCGCCCATGAACGCAATCGGATTAAACGTCTGa  <  1:1018773/140‑1 (MQ=255)

CTGGCACGTCGTCGTGCTAAAGGCCGCGCTCGTCTGACCGTTTCTAAGTAATAAAGCTAACCCCTGAGTGGTTAAGCTCGCATTTCCCAGGGAGTTACGCTTGTTAACTCCCAGTCAATTCACATTCGTCTTCCAGCAGCCACAACGGGCTGGCACGCCGCAAATTACCATTCTCGGCCGCCTGAATTCGCTGGGGCATCCCCGTATCGGTCTTACAGTCGCCAAGAAAAACGTTCGACGCGCCCATGAACGCAATCGGATTAAACGTCTGA  >  CP009273/3877786‑3878057

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 11 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A