Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A0 F0 I0 R1 99 113.5 3954416 97.9% 3871373 136.5

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP009273 3,877,923 A→G 100% Q24R (CAG→CGG)  rnpA → protein C5 component of RNase P

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0092733,877,9230AG100.0% 434.8 / NA 109Q24R (CAG→CGG) rnpAprotein C5 component of RNase P
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (50/59);  total (50/59)
Rejected as polymorphism: Frequency below/above cutoff threshold.
Rejected as polymorphism: Variant not supported by required number of reads on each strand.

Only 100 of 110 total aligned reads displayed.

GTCAGGTTCTGGCACGTCGTCGTGCTAAAGGCCGCGCTCGTCTGACCGTTTCTAAGTAATAAAGCTAACCCCTGAGTGGTTAAGCTCGCATTTCCCAGGGAGTTACGCTTGTTAACTCCCAGTCAATTCACATTCGTCTTCCAGCAGCCACAACGGGCTGGCACGCCGCAAATTACCATTCTCGGCCGCCTGAATTCGCTGGGGCATCCCCGTATCGGTCTTACAGTCGCCAAGAAAAACGTTCGACGCGCCCATGAACGCAATCGGATTAAACGTCTGACGCGTGAAAGCTT  >  CP009273/3877778‑3878070
                                                                                                                                                 |                                                                                                                                                   
gtcAGGTTCTGGCACGTCGTCGTGCTAAAGGCCGCGCTCGTCTGACCGTTTCTAAGTAATAAAGCTAACCCCTGAGTGGTTAAGCTCGCATTTCCCAGGGAGTTACGCTTGTTAACTCCCAGTCAATTCACATTCGTCTTCCAGCGGCcac                                                                                                                                                <  1:597270/151‑1 (MQ=255)
gtcAGGTTCTGGCACGTCGTCGTGCTAAAGGCCGCGCTCGTCTGACCGTTTCTAAGTAATAAAGCTAACCCCTGAGTGGTTAAGCTCGCATTTCCCAGGGAGTTACGCTTGTTAAATCCCAGTCAATTCACATTCGTCTTCCAGCGGCcac                                                                                                                                                >  2:287621/1‑151 (MQ=255)
    ggTTCTGGCACGTCGTCGTGCTAAAGGCCGCGCTCGTCTGACCGTTTCTAAGTAATAAAGCTAACCCCTGAGTGGTTAAGCTCGCATTTCCCAGGGAGTTACGCTTGTTAACTCCCAGTCAATTCACATTCGTCTTCCAGCGGCCACAACg                                                                                                                                            <  2:964756/151‑1 (MQ=255)
    ggTTCTGGCACGTCGTCGTGCTAAAGGCCGCGCTCGTCTGACCGTTTCTAAGTAATAAAGCTAACCCCTGAGTGGTTAAGCTCGCATTTCCCAGGGAGTTACGCTTGTTAACTCCCAGTCAATTCACATTCGTCTTCCAGCGGCCACAACg                                                                                                                                            >  1:901528/1‑151 (MQ=255)
    ggTTCTGGCACGTCGTCGTGCTAAAGGCCGCGCTCGTCTGACCGTTTCTAAGTAATAAAGCTAACCCCTGAGTGGTTAAGCTCGCATTTCCCAGGGAGTTACGCTTGTTAACTCCCAGTCAATTCACATTCGTCTTCCAGCGGCCACAACg                                                                                                                                            >  1:921593/1‑151 (MQ=255)
       tCTGGCACGTCGTCGTGCTAAAGGCCGCGCTCGTCTGACCGTTTCTAAGTAATAAAGCTAACCCCTGAGTGGTTAAGCTCGCATTTCCCAGGGAGTTACGCTTGTTAACTCCCAGTCAATTCACATTCGTCTTCCAGCGGCCACAACGGGc                                                                                                                                         <  1:638322/151‑1 (MQ=255)
       tCTGGCACGTCGTCGTGCTAAAGGCCGCGCTCGTCTGACCGTTTCTAAGTAATAAAGCTAACCCCTGAGTGGTTAAGCTCGCATTTCCCAGGGAGTTACGCTTGTTAACTCCCAGTCAATTCACATTCGTCTTCCAGCGGCCACAACGGGc                                                                                                                                         <  1:1336027/151‑1 (MQ=255)
        cTGGCACGTCGTCGTGCTAAAGGCCGCGCTCGTCTGACCGTTTCTAAGTAATAAAGCTAACCCCTGAGTGGTTAAGCTCGCATTTCCCAGGGAGTTACGCTTGTTAACTCCCAGTCAATTCACATTCGTCTTCCAGCGGCCACAACgg                                                                                                                                           >  2:1348454/1‑148 (MQ=255)
        cTGGCACGTCGTCGTGCTAAAGGCCGCGCTCGTCTGACCGTTTCTAAGTAATAAAGCTAACCCCTGAGTGGTTAAGCTCGCATTTCCCAGGGAGTTACGCTTGTTAACTCCCAGTCAATTCACATTCGTCTTCCAGCGGCCACAACgg                                                                                                                                           <  1:1348454/148‑1 (MQ=255)
         tGGCACGTCGTCGTGCTAAAGGCCGCGCTCGTCTGACCGTTTCTAAGTAATAAAGCTAACCCCTGAGTGGTTAAGCTCGCATTTCCCAGGGAGTTACGCTTGTTAACTCCCAGTCAATTCACATTCGTCTTCCAGCGGCCACAACGGGCTg                                                                                                                                       <  2:1622780/151‑1 (MQ=255)
         tGGCACGTCGTCGTGCTAAAGGCCGCGCTCGTCTGACCGTTTCTAAGTAATAAAGCTAACCCCTGAGTGGTTAAGCTCGCATTTCCCAGGGAGTTACGCTTGTTAACTCCCAGTCAATTCACATTCGTCTTCCAGCGGCCACAACGGGCTg                                                                                                                                       >  2:1112281/1‑151 (MQ=255)
          ggCACGTCGTCGTGCTAAAGGCCGCGCTCGTCTGACCGTTTCTAAGTAATAAAGCTAACCCCTGAGTGGTTAAGCTCGCATTTCCCAGGGAGTTACGCTTGTTAACTCCCAGTCAATTCACATTCGTCTTCCAGCGGCCACAACGGGCTgg                                                                                                                                      <  2:431785/151‑1 (MQ=255)
                     gtGCTAATGGCCGCGCTCGTCTGACCGTTTATAAGTAATAAAGCTAACCCCTGAGTGTTTAAGCTCGCATTTCCCAGTGAGTTACGCTTGTTAACTCCCATTCAATTCACATTCGTCTTCCAGCGGCCACAACGGGCTGGCACGCCGCaaa                                                                                                                           <  1:1550412/151‑1 (MQ=255)
                      tGCTAAAGGCCGCGCTCGTCTGACCGTTTCTAAGTAATAAAGCTAACCCCTGAGTGGTTAAGCTCGCATTTCCCAGGGAGTTACGCTTGTTAACTCCCAGTCAATTCACATTCGTCTTCCAGCGGCCACAACGGGCTGGCACGCCGCAAAt                                                                                                                          <  2:921593/151‑1 (MQ=255)
                      tGCTAAAGGCCGCGCTCGTCTGACCGTTTCTAAGTAATAAAGCTAACCCCTGAGTGGTTAAGCTCGCATTTCCCAGGGAGTTACGCTTGTTAACTCCCAGTCAATTCACATTCGTCTTCCAGCGGCCACAACGGGCTGGCACGCCGCAAAt                                                                                                                          >  1:435932/1‑151 (MQ=255)
                        cTAAAGGCCGCGCTCGTCTGACCGTTTCTAAGTAATAAAGCTAACCCCTGAGTGGTTAAGCTCGCATTTCCCAGGGAGTTACGCTTGTTAACTCCCAGTCAATTCACATTCGTCTTCCAGCGGCCACAACGGGCTGGCACGCCGCAAATTa                                                                                                                        >  2:820108/1‑151 (MQ=255)
                         tAAAGGCCGCGCTCGTCTGACCGTTTCTAAGTAATAAAGCTAACCCCTGAGTGGTTAAGCTCGCATTTCCCAGGGAGTTACGCTTGTTAACTCCCAGTCAATTCACATTCGTCTTCCAGCGGCCACAACGGGCTGGCACGCCGCAAATTAc                                                                                                                       >  1:71412/1‑151 (MQ=255)
                          aaaGGCCGCGCTCGTCTGACCGTTTCTAAGTAATAAAGCTAACCCCTGAGTGGTTAAGCTCGCATTTCCCAGGGAGTTACGCTTGTTAACTCCCAGTCAATTCACATTCGTCTTCCAGCGGCCACAAc                                                                                                                                             <  2:1017444/128‑1 (MQ=255)
                          aaaGGCCGCGCTCGTCTGACCGTTTCTAAGTAATAAAGCTAACCCCTGAGTGGTTAAGCTCGCATTTCCCAGGGAGTTACGCTTGTTAACTCCCAGTCAATTCACATTCGTCTTCCAGCGGCCACAAc                                                                                                                                             >  1:1017444/1‑128 (MQ=255)
                          aaaGGCCGCGCTCGTCTGACCGTTTCTAAGTAATAAAGCTAACCCCTGAGTGGTTAAGCTCGCATTTCCCAGGGAGTTACGCTTGTTAACTCCCAGTCAATTCACATTCGTCTTCCAGCGGCCACAACGGGCTGGCACGCCGCAAATTAcc                                                                                                                      <  1:508716/151‑1 (MQ=255)
                          aaaGGCCGCGCTCGTCTGACCGTTTCTAAGTAATAAAGCTAACCCCTGAGTGGTTAAGCTCGCATTTCCCAGGGAGTTACGCTTGTTAACTCCCAGTCAATTCACATTCGTCTTCCAGCGGCCACAACGGGCTGGCACGCCGCAAATTAcc                                                                                                                      <  1:508585/151‑1 (MQ=255)
                           aaGGTCGCTATCGTCTTACGGTTTCTAATTAATAAAGCTAACCCCTGAGTGGTTAAGCTCTCATTTCCCAGGGAGTTAAGCTTGTTAACTCCCAGTCAATTCACATTAGTCTTCCAGCGGACACAACTGGCTGGCACTACGCAAATTAcaa                                                                                                                     <  2:1165481/151‑3 (MQ=255)
                             ggCCGCGCTCGTCTGACCGTTTCTAAGTAATAAAGCTAACCCCTGAGTGGTTAAGCTCGCATTTCCCAGGGAGTTACGCTTGTTAACTCCCAGTCAATTCACATTCGTCTTCCAGCGGCCACAACGGGCTGGCAcgccgc                                                                                                                              >  2:1536367/1‑140 (MQ=255)
                             ggCCGCGCTCGTCTGACCGTTTCTAAGTAATAAAGCTAACCCCTGAGTGGTTAAGCTCGCATTTCCCAGGGAGTTACGCTTGTTAACTCCCAGTCAATTCACATTCGTCTTCCAGCGGCCACAACGGGCTGGCAcgccgc                                                                                                                              <  1:1536367/140‑1 (MQ=255)
                             ggCCGCGCTCGTCTGACCGTTTCTAAGTAATAAAGCTAACCCCTGAGTGGTTAAGCTCGCATTTCCCAGGGAGTTACGCTTGTTAACTCCCAGTCAATTCACATTCGTCTTCCAGCGGCCACAACGGGCTGGCACGCCGCAAATTACCAtt                                                                                                                   >  1:954595/1‑151 (MQ=255)
                               ccGCGCTCGTCTGACCGTTTCTAAGTAATAAAGCTAACCCCTGAGTGGTTAAGCTCGCATTTCCCAGGGAGTTACGCTTGTTAACTCCCAGTCAATTCACATTCGTCTTCCAGCGGCCACAACGGGCTGGCACGCCGCAAATTACCATtct                                                                                                                 >  2:327238/1‑151 (MQ=255)
                               caccgcTCGTCTGACCGTTTCTAAGTAATAAAACTAACCCCTGAGTGGGTAAGCTCGCATTTCCCAGGGAGTTACTCTTGTTAACTCCAAGTCAATTCACATTCGTCTTCCAGAGGCCACAACGGGCTGGCACGCCGCAAATAACCATtct                                                                                                                 >  2:323292/4‑151 (MQ=255)
                                  cgcTCGTCTGACCGTTTCTAAGTAATAAAGCTAACCCCTGAGTGGTTAAGCTCGCATTTCCCAGGGAGTTACGCTTGTTAACTCCCAGTCAATTCACATTCGTCTTCCAGCGGCCACAACGGGCTGGCACGCCGCAAATTACCATTCTCgg                                                                                                              <  2:356819/151‑1 (MQ=255)
                                  cgcTCGTCTGACCGTTTCTAAGTAATAAAGCTAACCCCTGAGTGGTTAAGCTCGCATTTCCCAGGGAGTTACGCTTGTTAACTCCCAGTCAATTCACAGTCGTCTTCCAGCGGCCACAACGGGCTGGCACGCCGCAAATTACCATTCTCgg                                                                                                              <  2:277407/151‑1 (MQ=255)
                                    cTCGTCTGACCGTTTCTAAGTAATAAAGCTAACCCCTGAGTGGTTAAGCTCGCATTTCCCAGGGAGTTACGCTTGTTAACTCCCAGTCAATTCACATTCGTCTTCCAGCGGCCACAACGGGCTGGCAcgc                                                                                                                                 >  2:1785939/1‑130 (MQ=255)
                                       gTCTGACCGTTTCTAAGTAATAAAGCTAACCCCTGAGTGGTTAAGCTCGCATTTCCCAGGGAGTTACGCTTGTTAACTCCCAGTCAATTCACATTCGTCTTCCAGCGGCCACAACGGGCt                                                                                                                                        <  1:1840775/120‑1 (MQ=255)
                                       gTCTGACCGTTTCTAAGTAATAAAGCTAACCCCTGAGTGGTTAAGCTCGCATTTCCCAGGGAGTTACGCTTGTTAACTCCCAGTCAATTCACATTCGTCTTCCAGCGGCCACAACGGGCt                                                                                                                                        >  2:1840775/1‑120 (MQ=255)
                                       gTCTGACCGTTTCTAAGTAATAAAGCTAACCCCTGAGTGGTTAAGCTCGCATTTCCCAGGGAGTTACGCTTGTTAACTCCCAGTCAATTCACATTCGTCTTCCAGCGGCCACAACGGGCTGGCACGCCGCAAATTACCATTCTCGgccgcc                                                                                                         >  1:1617321/1‑151 (MQ=255)
                                       gTCTGACCGTTTCTAAGTAATAAAGCTAACCCCTGAGTGGTTAAGCTCGCATTTCCCAGGGAGTTACGCTTGTTAACTCCCAGTCAATTCACATTCGTCTTCCAGCGGCCACAACGGGCTGGCACGCCGCAAATTACCATTCTCGgccgcc                                                                                                         >  1:639461/1‑151 (MQ=255)
                                         cTGACCGTTTCTAAGTAATAAAGCTAACCCCTGAGTGGTTAAGCTCGCATTTCCCAGGGAGTTACGCTTGTTAACTCCCAGTCAATTCACATTCGTCTTCCAGCGGCCACAACGGGCTGGCACGCCGCAAATTACCATTCTCGGCCGCCTg                                                                                                       <  2:486518/151‑1 (MQ=255)
                                          tGACCGTTTCTAAGTAATAAAGCTAACCCCTGAGTGGTTAAGCTCGCATTTCCCAGGGAGTTACGCTTGTTAACTCCCAGTCAATTCACATTCGTCTTCCAGCGGCCACAACGGGCTGGCACGCCGCAAATTACCATTCTCGGCCGCCTGa                                                                                                      >  1:1773955/1‑151 (MQ=255)
                                           gACCGTTTCTAAGTAATAAAGCTAACCCCTGAGTGGTTAAGCTCGCATTTCCCAGGGAGTTACGCTTGTTAACTCCCAGTCAATTCACATTCGTCTTCCAGCGGCCACAACGGGCTGGCACGCCGCAAATTACCATTCTCGGCCGCCTGaa                                                                                                     >  2:1676956/1‑151 (MQ=255)
                                               gTTTCTAAGTAATAAAGCTAACCCCTGAGTGGTTAAGCTCGCATTTCCCAGGGAGTTACGCTTGTTAACTCCCAGTCAATTCACATTCGTCTTCCAGCGGCCACAACGGGCTGGCACGCCGCAAATTAc                                                                                                                       <  1:273440/129‑1 (MQ=255)
                                               gTTTCTAAGTAATAAAGCTAACCCCTGAGTGGTTAAGCTCGCATTTCCCAGGGAGTTACGCTTGTTAACTCCCAGTCAATTCACATTCGTCTTCCAGCGGCCACAACGGGCTGGCACGCCGCAAATTAc                                                                                                                       >  2:273440/1‑129 (MQ=255)
                                               gTTTCTAAGTAATAAAGCTAACCCCTGAGTGGTTAAGCTCGCATTTCCCAGGGAGTTACGCTTGTTAACTCCCAGTCAATTCACATTCGTCTTCCAGCGGCCACAACGGGCTGGCACGCCGCAAATTACCATTCTCGGCCGCCTGAATTCg                                                                                                 >  2:1492301/1‑151 (MQ=255)
                                                  tCTAAGTAATAAAGCTAACCCCTGAGTGGTTAAGCTCGCATTTCCCAGGGAGTTACGCTTGTTAACTCCCAGTCAATTCACATTCGTCTTCCAGCGGCCACAACGGGCTGGCACGCCGCAAATTACCATTCTCGgc                                                                                                             >  1:561907/1‑136 (MQ=255)
                                                  tCTAAGTAATAAAGCTAACCCCTGAGTGGTTAAGCTCGCATTTCCCAGGGAGTTACGCTTGTTAACTCCCAGTCAATTCACATTCGTCTTCCAGCGGCCACAACGGGCTGGCACGCCGCAAATTACCATTCTCGgc                                                                                                             <  2:561907/136‑1 (MQ=255)
                                                  tCTAAGTAATAAAGCTAACCCCTGAGTGGTTAAGCTCGCATTTCCCAGGGAGTTACGCTTGTTAACTCCCAGTCAATTCACATTCGTCTTCCAGCGGCCACAACGGGCTGGCACGCCGCAAATTACCATTCTCGGCCGCCTGAATTCGCTg                                                                                              <  1:556606/151‑1 (MQ=255)
                                                  tCTAAGTAATAAAGCTAACCCCTGAGTGGTTAAGCTCGCATTTCCCAGGGAGTTACGCTTGTTAACTCCCAGTCAATTCACATTCGTCTTCCAGCGGCCACAACGGGCTGGCACGCCGCAAATTACCATTCTCGGCCGCCTGAATTCGCTg                                                                                              <  2:71412/151‑1 (MQ=255)
                                                   cTAAGTAATAAAGCTAACCCCTGAGTGGTTAAGCTCGCATTTCCCAGGGAGTTACGCTTGTTAACTCCCAGTCAATTCACATTCGTCTTCCAGCGGCCACAACGGGCTGGCACGCCGCAAATTACCATTCTCGGCCGCCTGAATTCGCTgg                                                                                             <  2:63285/151‑1 (MQ=255)
                                                       gTAATAAAGCTAACCCCTGAGTGGTTAAGCTCGCATTTCCCAGGGAGTTACGCTTGTTAACTCCCAGTCAATTCACATTCGTCTTCCAGCGGCCACAACGGGCTGGCACGCCGCAAATTACCATTCTCGGCCGCCTGAATTCGCTGGGGCa                                                                                         <  2:639461/151‑1 (MQ=255)
                                                       gTAATAAAGCTAACCCCTGAGTGGTTAAGCTCGCATTTCCCAGGGAGTTACGCTTGTTAACTCCCAGTCAATTCACATTCGTCTTCCAGCGGCCACAACGGGCTGGCACGCCGCAAATTACCATTCTCGGCCGCCTGAATTCGCTGGGGCa                                                                                         <  2:1617321/151‑1 (MQ=255)
                                                           cgagcttAACCACTCAGGGGTT‑AGCTCGCATTTCCCAGGGAGTTACGCTTGTTAACTCCCAGTCAATTCACATTCGTCTTCCAGCGGCCACAACGGGCTGGCACGCCGCAAATTACCATTCTCGGCCGCCTGAATTCGCTg                                                                                              <  1:1912677/135‑1 (MQ=255)
                                                           cgagcttAACCACTCAGGGGTT‑AGCTCGCATTTCCCAGGGAGTTACGCTTGTTAACTCCCAGTCAATTCACATTCGTCTTCCAGCGGCCACAACGGGCTGGCACGCCGCAAATTACCATTCTCGGCCGCCTGAATTCGCTg                                                                                              >  2:1912677/7‑141 (MQ=255)
                                                            aaaGCTAACCCCTGAGTGGTTAAGCTCGCATTTCCCAGGGAGTTACGCTTGTTAACTCCCAGTCAATTCACATTCGTCTTCCAGCGGCCACAACGGGCTGGCACGCCGCAAATTACCATTCTCGGCCGCCTGAATTCGCTGGGGCATcccc                                                                                    >  1:895819/1‑151 (MQ=255)
                                                                  aaCCCCTGAGTGGTTAAGCTCGCATTTCCCAGGGAGTTACGCTTGTTAACTCCCAGTCAATTCACATTCGTCTTCCAGCGGCCACAACGGGCTGGCACGCCGCAAATTACCATTCTCGGCCGCCTGAATTCGCTGGGGCATCCCCGTATCg                                                                              <  2:1773955/151‑1 (MQ=255)
                                                                   aCCCCTGAGTGGTTAAGCTCGCATTTCCCAGGGAGTTACGCTTGTTAACTCCCAGTCAATTCACATTCGTCTTCCAGCGGCCACAACGGGCTGGCACGCCGCAAATTACCATTCTCGGCCGCCTGAATTCGCTGGGGCATCCCCGTATCgg                                                                             <  2:75034/151‑1 (MQ=255)
                                                                    ccccTGAGTGGTTAAGCTCGCATTTCCCAGGGAGTTACGCTTGTTAACTCCCAGTCAATTCACATTCGTCTTCCAGCGGCCACAACGGGCTGGCACGCCGCAAATTACCATTCTCGGCCGCCTGAATTCGCTGGGGCATCCCCGTATCGGt                                                                            >  2:245700/1‑151 (MQ=255)
                                                                     cccTGAGTGGTTAAGCTCGCATTTCCCAGGGAGTTACGCTTGTTAACTCCCAGTCAATTCACATTCGTCTTCCAGCGGCCACAACGGGCTGGCACGCCGCAAATTACCATTCTCGGCCGCCTGAATTCGCTGGGGCATCCCCGTATCGGTc                                                                           <  2:901528/151‑1 (MQ=255)
                                                                      ccTGAGTGGTTAAGCTCGCATTTCCCAGGGAGTTACGCTTGTTAACTCCCAGTCAATTCACATTCGTCTTCCAGCGGCCACAACGGGCTGGCACGCCGCAAATTACCATTCTCGGCCGCCTGAATTCGCTGGGGCATCCCCGTATCGGTCt                                                                          <  2:1662039/151‑1 (MQ=255)
                                                                        tGAGTGGTTAAGCTCGCATTTCCCAGGGAGTTACGCTTGTTAACTCCCAGTCAATTCACATTCGTCTTCCAGCGGCCACAACGGGCTGGCACGCCGCAAATTACCATTCTCGGCCGCCTGAATTCGCTGGGGCATCCCCGTATCGGTCTTa                                                                        >  1:1966608/1‑151 (MQ=255)
                                                                        tGAGTGGTTAAGCTCGCATTTCCCAGGGAGTTACGCTTGTTAACTCCCAGTCAATTCACATTCGTCTTCCAGCGGCCACAACGGGCTGGCACGCCGCAAATTACCATTCTCGGCCGCCTGAATTCGCTGGGGCATCCCCGTATCGGTCTTa                                                                        >  2:550780/1‑151 (MQ=255)
                                                                        tGAGTGGTTAAGCTCGCATTTCCCAGGGAGTTACGCTTGTTAAATCCCAGTCAATTCACATTCGTCTTCCAGCGGCCACAACGGGCTGGCACGCCGCAAATTACCATTCTCGGCCGCCTGAATTCGCTGGGGCATCCCCTTATCGGTCTTa                                                                        <  1:287621/151‑1 (MQ=255)
                                                                         gAGTGGTTAAGCTCGCATGTCCCAGGGAGTTACGCTTGTTAACTCCCAGTCAATTCACATTCGTCTTCCAGCGGCCACAACGGGCTGGCACGCCGCAAATTACCATTCTCGGCCGCCTGAATTCGCTGGGGCATCCCCGTATCGGTCTTAc                                                                       <  1:1112281/151‑1 (MQ=255)
                                                                           gTGGTTAAGCTCGCATTTCCCAGGGAGTTACGCTTGTTAACTCCCAGTCAATTCACATTCGTCTTCCAGCGGCCACAACGGGCTGGCACGCCGCAAATTACCATTCTCGgccgcc                                                                                                         >  1:1230395/1‑115 (MQ=255)
                                                                           gTGGTTAAGCTCGCATTTCCCAGGGAGTTACGCTTGTTAACTCCCAGTCAATTCACATTCGTCTTCCAGCGGCCACAACGGGCTGGCACGCCGCAAATTACCATTCTCGgccgcc                                                                                                         <  2:1230395/115‑1 (MQ=255)
                                                                           gTGGTTAAGCTCGCATTTCCCAGGGAGTTACGCTTGTTAACTCCCAGTCAATTCACATTCGTCTTCCAGCGGCCACAACGGGCTGGCACGCCGCAAATTACCATTCTCGGCCGCCTGAATTCGCTGGGGCATCCCCGTATCGGTCTTACAg                                                                     <  2:1930414/151‑1 (MQ=255)
                                                                             ggTTAAGCTCGCATTTCCCAGGGAGTTACGCTTGTTAACTCCCAGTCAATTCACATTCGTCTTCCAGCGGCCACAACGGGCTGGCACGCCGCAAATTACCATTCTCGGCCGCCTGAATTCGCTGGGGCATCCCCGTATCGGTCTTACAGTc                                                                   >  2:390420/1‑151 (MQ=255)
                                                                             ggTTAAGCTCGCATTTCCCAGGGAGTTACGCTTGTTAACTCCCAGTCAATTCACATTCGTCTTCCAGCGGCCACAACGGGCTGGCACGCCGCAAATTACCATTCTCGGCCGCCTGAATTCGCTGGGGCATCCCCGTATCGGTCTTACAGTc                                                                   >  1:1408096/1‑151 (MQ=255)
                                                                              gTTAAGCTCGCATTTCCCAGGGAGTTACGCTTGTTAACTCCCAGTCAATTCACATTCGTCTTCCAGCGGCCACAACGGGCTGGCACGCCGCAAATTACCATTCTCGGCCGCCTGAATTCGCTGGGGCATCCCCGTATCGGTCTTACAGTCg                                                                  >  1:1027139/1‑151 (MQ=255)
                                                                                 aaGCTCGCATTTCCCAGGGAGTTACGCTTGTTAACTCCCAGTCAATTCACATTCGTCTTCCAGCGGCCACAACGGGCTGGCACGCCGCAAATTACCATTCTCGGCCGCCTGAATTCGCTGGGGCATCCCCGTATCGGTCTTACAGTCGCCa                                                               <  1:750207/151‑1 (MQ=255)
                                                                                    cTCGCATTTCCCAGGGAGTTACGCTTGTTAACTCCCAGTCAATTCACATTCGTCTTCCAGCGGCCACAACGGGCTGGCACGCCGCAAATTACCATTCTCGGCCGCCTGAATTCGCTGGGGCATCCCCGTa                                                                                 >  2:1646587/1‑130 (MQ=255)
                                                                                    cTCGCATTTCCCAGGGAGTTACGCTTGTTAACTCCCAGTCAATTCACATTCGTCTTCCAGCGGCCACAACGGGCTGGCACGCCGCAAATTACCATTCTCGGCCGCCTGAATTCGCTGGGGCATCCCCGTa                                                                                 <  1:1646587/130‑1 (MQ=255)
                                                                                     tCGCATTTCCCAGGGAGTTACGCTTGTTAACTCCCAGTCAATTCACATTCGTCTTCCAGCGGCCACAACGGGCTGGCACGCCGCAAATTACCATTCTCGGCCGCCTGAATTCGCTGGGGCATCCCCGTATCGGTCTTACAGTCGCCAAGaa                                                           <  2:895819/151‑1 (MQ=255)
                                                                                     tCGCATTTCCCAGGGAGTTACGCTTGTTAACTCCCAGTCAATTCACATTCGTCTTCCAGCGGCCACAACGGGCTGGCACGCCGCAAATTACCATTCTCGGCCGCCTGAATTCGCTGGGGCATCCCCGTATCGGTCTTACAGTCGCCAAGaa                                                           <  1:6807/151‑1 (MQ=255)
                                                                                     tCGCATTTCCCACGGAGGTACGCTTGTTAACTCCCAGTCAATTCACATTCGTCTTCCAGCGGCCACAACGGGCTGGCACGCCGCAAATTACCATTCTCGGCCGCCTGAATTCGCTGGGGCATCCCCGTATCGGTCTTACAGTCGCCAAGaa                                                           <  1:6675/151‑1 (MQ=255)
                                                                                       gCATTTCCCAGGGAGTTACGCTTGTTAACTCCCAGTCAATTCACATTCGTCTTCCAGCGGCCACAACGGGCTGGCACGCCGCAAATTACCATTCTCGGCCGCCTGAATTCGCTGGGGCATCCCCGTATCGGTCTTACAGTCGCCAAGaaaa                                                         >  1:1953385/1‑151 (MQ=255)
                                                                                         aTTTCCCAGGGAGTTACGCTTGTTAACTCCCAGTCAATTCACATTCGTCTTCCAGCGGCCACAACGGGCTGGCACGCCGCAAATTACCATTCTCGGCCGCCTGAATTCGCTGGGGCATCCCCGTATCGGTCTTACAGTCGCCAAGAAAAAc                                                       <  1:1070081/151‑1 (MQ=255)
                                                                                          tttCCCAGGGAGTTACGCTTGTTAACTCCCAGTCAATTCACATTCGTCTTCCAGCGGCCACAACGGGCTGGCACGCCGCAAATTACCATTCTCGGCCGCCTGAATTCGCTGGGGCATCCCCGTATCGGTCTTACAGTCGCCAAGAAAAACg                                                      <  1:1492301/151‑1 (MQ=255)
                                                                                             cccAGGGAGTTACGCTTGTTAACTCCCAGTCAATTCACATTCGTCTTCCAGCGGCCACAACGGGCTGGCACGCCGCAAATTACCATTCTCGGCCGCCTGAATTCGCTGGGGCATCCCCGTATCGGTCTTACAGTCGCCAAGAAAAACGTTc                                                   <  1:1014410/151‑1 (MQ=255)
                                                                                             cccAGGGAGTTACGCTTGTTAACTCCCAGTCAATTCACATTCGTCTTCCAGCGGCCACAACGGGCTGGCACGCCGCAAATTACCATTCTCGGCCGCCTGAATTCGCTGGGGCATCCCCGTATCGGTCTTACAGTCGCCAAGAAAAACGTTc                                                   <  2:1966608/151‑1 (MQ=255)
                                                                                             cccAGGGAGTTACGCTTGTTAAAGCCCAGCCAATTCACAGTCGTCGTCCAGCGGCCAGAACGGGCTGGCAAGCCGCAAATTACCATTCTCTGCCGCCTGAATTCGCTGGGGCATCACCGTATCGGTCTTACAGTCGCCAAGAAAAACGTTc                                                   <  1:323292/151‑1 (MQ=255)
                                                                                                aGGGAGTTACGCTTGTTAACTCCCAGTCAATTCACATTCGTCTTCCAGCGGCCACAACGGGCTGGCACGCCGCAAATTACCATTCTCGGCCGCCTGAATTCGCTGGGGCATCCCCGTATCGGACTTACAGTCGCCAAGAAAAACGTTCGAc                                                <  2:762176/151‑1 (MQ=255)
                                                                                                     gTTACGCTTGTTAACTCCCAGTCAATTCACATTCGTCTTCCAGCGGCCACAACGGGCTGGCACGCCGCAAAt                                                                                                                          >  2:1365193/1‑72 (MQ=255)
                                                                                                     gTTACGCTTGTTAACTCCCAGTCAATTCACATTCGTCTTCCAGCGGCCACAACGGGCTGGCACGCCGCAAAt                                                                                                                          <  1:1365193/72‑1 (MQ=255)
                                                                                                     gTTACGCTTGTTAACTCCCAGTCAATTCACATTCGTCTTCCAGCGGCCACAACGGGCTGGCACGCCGCAAATTACCATTCTCgg                                                                                                              <  1:472605/84‑1 (MQ=255)
                                                                                                     gTTACGCTTGTTAACTCCCAGTCAATTCACATTCGTCTTCCAGCGGCCACAACGGGCTGGCACGCCGCAAATTACCATTCTCgg                                                                                                              >  2:472605/1‑84 (MQ=255)
                                                                                                       tACGCTTGTTAACTCCCAGTCAATTCACATTCGTCTTCCAGCGGCCACAACGGGCTGGCACGCCGCAAATTACCATTCTCGGCCGCCTGAATTCGCTGGGGCATCCCCGTATCGGTCTTACAGTCGCCAAGAAAAACGTTCGACGCGCCCa                                         <  1:390420/151‑1 (MQ=255)
                                                                                                           cTTGTTAACTCCCAGTCAATTCACATTCGTCTTCCAGCGGCCACAACGGGCTGGCACGCCGCAAATTACCATTCTCGGCCGCCTGAATTCGCTGGGGCATCCCCGTATCGGTCTTACAGTCGCCAAGAAAAACGTTCGACGCGCCCATGaa                                     >  1:865764/1‑151 (MQ=255)
                                                                                                           cTTGTTAACTCCCAGTCAATTCACATTCGTCTTCCAGCGGCCACAACGGGCTGGCACGCCGCAAATTACCATTCTCGGCCGCCTGAATTCGCTGGGGCATCCCCGTATCGGTCTTACAGTCGCCAAGAAAAACGTTCGACGCGCCCATGaa                                     >  1:1758512/1‑151 (MQ=255)
                                                                                                                      ccAGTCAATTCACATTCGTCTTCCAGCGGCCACAACGGGCTGGCACGCCGCAAATTACCATTCTCGGCCGCCTGAATTCGCTGGGGCATCCCCGTATCGGTCTTACAGTCGCCAAGAAAAACGTTCGACGCGCCCATGAACGCAATc                              <  1:1772083/147‑1 (MQ=255)
                                                                                                                      ccAGTCAATTCACATTCGTCTTCCAGCGGCCACAACGGGCTGGCACGCCGCAAATTACCATTCTCGGCCGCCTGAATTCGCTGGGGCATCCCCGTATCGGTCTTACAGTCGCCAAGAAAAACGTTCGACGCGCCCATGAACGCAATc                              >  2:1772083/1‑147 (MQ=255)
                                                                                                                       cAGTCAATTCACATTCGTCTTCCAGCGGCCACAACGGGCTGGCACGCCGCAAATTACCATTCTCGGCCGCCTGAATTCGCTGGGGCATCCCCGTATCGGTCTTACAGTCGCCAAGAAAAACGTTCGACGCGCCCATGAACGCAATCGGAtt                         <  1:550780/151‑1 (MQ=255)
                                                                                                                         gTCAATTCACATTCGTCTTCCAGCGGCCACAACGGGCTGGCACGCCGCAAATTACCATTCTCGGCCGCCTGAATTCGCTGGGGCATCCCCGTATCGGTCTTACAGTCGCCAAGAAAAACGTTCGACGCGCCCATGAACGCAATCGGATTaa                       <  1:327238/151‑1 (MQ=255)
                                                                                                                         gTCAATTCACATTCGTCTTCCAGCGGCCACAACGGGCTGGCACGCCGCAAATTACCATTCTCGGCCGCCTGAATTCGCTGGGGCATCCCCGTATCGGTCTTACAGTCGCCAAGAAAAACGTTCGACGCGCCCATGAACGCAATCGGATTaa                       <  1:327383/151‑1 (MQ=255)
                                                                                                                           cAATTCACATTCGTCTTCCAGCGGCCACAACGGGCTGGCACGCCGCAAATTACCATTCTCGGCCGCCTGAATTCGCTGGGGCATCCCCGTATCGGTCTTACAGTCGCCAAGAAAAACGTTCGACGCGCCCATGAACGCAATCGGATTAAAc                     >  1:1683988/1‑151 (MQ=255)
                                                                                                                            aaTTCACATTCGTCTTCCAGCGGCCACAACGGGCTGGCACGCCGCAAATTACCATTCTCGGCCGCCTGAATTCGCTGGGGCATCCCCGTATCGGTCTTACAGTCGCCAAGAAAAACGTTCGACGCGCCCATGAACGCAATCGGATTAAACg                    <  2:1953385/151‑1 (MQ=255)
                                                                                                                              ttCACATTCGTCTTCCAGCGGCCACAACGGGCT‑GCACGCCGCAAATTACCATTCTCGGCCGCCTGAATTCGCTGGGGCATCCCCGTATCGGTCTTACAGTCGCCAAGAAAAACGTTCGACGCGCCCATGAACGCAATCGGATTAAACGTCt                 >  2:1682902/1‑151 (MQ=255)
                                                                                                                                       gTCTTCCAGCGGCCACAACGGGCTGGCACGCCGCAAATTACCATTCTCGGCCGCCTGAATTCGCTGGGGCATCCCCGTATCGGTCTTACAGTCGCCAAGaaaa                                                         <  1:399240/103‑1 (MQ=255)
                                                                                                                                       gTCTTCCAGCGGCCACAACGGGCTGGCACGCCGCAAATTACCATTCTCGGCCGCCTGAATTCGCTGGGGCATCCCCGTATCGGTCTTACAGTCGCCAAGaaaa                                                         >  2:399240/1‑103 (MQ=255)
                                                                                                                                       gTCTTCCAGCGGCCACAACGGGCTGGCACGCCGCAAATTACCATTCTCGGCCGCCTGAATTCGCTGGGGCATCCCCGTATCGGTCTTACAGTCGCCAAGAAAAACGTTCGACGCGCCCATGAACGCAATCGGATTAAACGTCTGACGCGTg         >  2:40324/1‑151 (MQ=255)
                                                                                                                                       gTCTTCCAGCGGCCACAACGGGCTGGCACGCCGCAAATTACCATTCTCGGCCGCCTGAATTCGCTGGGGCATCCCCGTATCGGTCTTACAGTCGCCAAGAAAAACGTTCGACGCGCCCATGAACGCAATCGGATTAAACGTCTGACGCGTg         >  2:937497/1‑151 (MQ=255)
                                                                                                                                          ttCCAGCGGCCACAACGGGCTGGCACGCCGCAAATTACCATTCTCGGCCGCCTGAATTCGCTGGGGCATCCCCGTATCGGTCTTACAGTCGCCAAGAAAAACGTTCGACGCGCCCATGAACGCAATCGGATTAAACGTCTGACGCGTGaaa      >  2:1363430/1‑151 (MQ=255)
                                                                                                                                            ccAGCGGCCACAACGGGCTGGCACGCCGCAAATTACCATTCTCGGCCGCCTGAATTCGCTGGGGCATCCCCGTATCGGTCTTACAGTCGCCAAGAAAAACGTTCGACGCGCCCATGAACGCAATCGGATTAAACGTCTGACGCGTGAAAGc    <  2:1027139/151‑1 (MQ=255)
                                                                                                                                            ccAGCGGCCACAACGGGCTGGCACGCCGCAAATTACCATTCTCGGCCGCCTGAATTCGCTGGGGCATCCCCGTATCGGTCTTACAGTCGCCAAGAAAAACGTTCGACGCGCCCATGAACGCAATCGGATTAAACGTCTGACGCGTGAAAGc    >  1:1472988/1‑151 (MQ=255)
                                                                                                                                                 |                                                                                                                                                   
GTCAGGTTCTGGCACGTCGTCGTGCTAAAGGCCGCGCTCGTCTGACCGTTTCTAAGTAATAAAGCTAACCCCTGAGTGGTTAAGCTCGCATTTCCCAGGGAGTTACGCTTGTTAACTCCCAGTCAATTCACATTCGTCTTCCAGCAGCCACAACGGGCTGGCACGCCGCAAATTACCATTCTCGGCCGCCTGAATTCGCTGGGGCATCCCCGTATCGGTCTTACAGTCGCCAAGAAAAACGTTCGACGCGCCCATGAACGCAATCGGATTAAACGTCTGACGCGTGAAAGCTT  >  CP009273/3877778‑3878070

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A