Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A11 F64 I0 R1	416	84.5	3064920	96.6%	2960712	135.7

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
RA	CP009273	3,877,923	A→G	100%	Q24R (CAG→CGG)	rnpA →	protein C5 component of RNase P

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP009273	3,877,923	0	A	G	95.1%	200.2 / 1.5	61	Q24R (CAG→CGG)	rnpA	protein C5 component of RNase P
Reads supporting (aligned to +/- strand): ref base A (1/2); new base G (30/28); total (31/30)
Fisher's exact test for biased strand distribution p-value = 6.12e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.58e-01
Rejected as polymorphism: E-value score below prediction cutoff.
Rejected as polymorphism: Frequency below/above cutoff threshold.
Rejected as polymorphism: Variant not supported by required number of reads on each strand.

CTGGCACGTCGTCGTGCTAAAGGCCGCGCTCGTCTGACCGTTTCTAAGTAATAAAGCTAACCCCTGAGTGGTTAAGCTCGCATTTCCCAGGGAGTTACGCTTGTTAACTCCCAGTCAATTCACATTCGTCTTCCAGCAGCCACAACGGGCTGGCACGCCGCAAATTACCATTCTCGGCCGCCTGAATTCGCTGGGGCATCCCCGTATCGGTCTTACAGTCGCCAAGAAAAACGTTCGACGCGCCCATGAACGCAATCGGATTAAACGTCTGA  >  CP009273/3877786‑3878057

cTGGCACGTCGTCGTGCTAAAGGCCGCGGTCGTCTGACCGTTTCGAAGTAATAAAGCTAACCCCTGAGTGGTTAAGCTCGCATGTCCCAGGGAGTTACGCTTGTTAACTCCCAGTCAATTCACATTCGTCTTCCagcggc                                                                                                                                      <  1:914506/140‑1 (MQ=255)

cTGGCACGTCGTCGTGCTAAAGGCCGCGCTCGTCTGACCGTTTCTAAGTAATAAAGCTAACCCCTGAGTGGTTAAGCTCGCATTTCCCAGGGAGTTACGCTTGTTAACTCCCAGTCAATTCACATTCGTCTTCCagcggc                                                                                                                                      <  1:1372478/140‑1 (MQ=255)

  ggCACGTCGTCGTGCTAAAGGCCGCGCTCGTCTGACCGTTTCTAAGTAATAAAGCTAACCCCTGAGTGGTTAAGCTCGCATTTCCCAGGGAGTTACGCTTGTTAACTCCCAGTCACTTCACATTCGTCTTCCAGCGGCca                                                                                                                                    >  1:943203/1‑140 (MQ=255)

              tGCTAAAGGCCGCGCTCGTCTGACCGTTTCTAAGTAATAAAGCTAACCCCTGAGTGGTTAAGCTCGCCTTTCCCAGGCAGTTACGCTTGTTAACTCCCAGTCAATTCACATTCGTCTTCCAGCGGCCACAACGCGCTGGc                                                                                                                        >  2:184690/1‑140 (MQ=255)

                    aGGCCGCGCTCGTCTGACCGTTTCTAAGTAATAAAGCTAACCCCTGAGTGGTTAAGCTCGCATTTCCCAGGGAGTTACGCTTGTTAACTCCCAGTCAATTCACATTCGTCTTCCAGCGGCCACAACGGGCTGGCAcgccg                                                                                                                  <  1:1264330/140‑1 (MQ=255)

                     ggCCGCGCTCGTCTGACCGTTTCTAAGTAATAAAGCTAACCCCTGAGTGGTAAAGCTCGCATTTCCCAGGGAGTTACGCTTGTTAACTCCCAGTCAATTCACATTCGTCTTCCAGCGGCCACAACGGGCTGGCAcgccgc                                                                                                                 >  1:596266/1‑140 (MQ=255)

                      gCCGCGCTCGTCTGACCGTTTCTAAGTAATAAAGCTAACCCCTGAGTGGTTAAGCTCGCATTTCCCAGGGAGTTACGCTTGTTAACTCCCAGTCAATTCACATTCGTCTTCCAGCGGCCACAACGGGCTGGCACGCCGCa                                                                                                                <  2:922015/140‑1 (MQ=255)

                      gCCGCGCTCGTCTGACCGTTTCTAAGTAATAAAGCTAACCCCTGAGTGGTTAAGCTCGCATTTCCCAGGGAGTTACGCTTGTTAACTCCCAGTCAATTCACATTCGTCTTCCAGCGGCCACAACGGGCTGGCACGCCGCa                                                                                                                <  2:195337/140‑1 (MQ=255)

                      gCCGCGCTCGTCTGACCGTTTCTAAGTAATAAAGCTAACCCCTGAGTGGTTAAGCTCGCATTTCCCAGGGAGTTACGCTTGTTAACTCCCAGTCAATTCACATTCGTCTTCCAGCGGCCACAACGGGCTGGCACGCCGCa                                                                                                                <  2:210555/140‑1 (MQ=255)

                      gCCGCGCTCGTCTGACCGTTTCTAAGTAATAAAGCTAACCCCTGAGTGGTTAAGCTCGCAGTTCCCAGGGAGTTACGCTTGTTAACTCCCAGTCAATTCACATTCGTCTTCCAGCGGCCACAACGGGCTGGCACGCCGCa                                                                                                                <  2:499704/140‑1 (MQ=255)

                          cgcTCGTCTGACCGTTTCTAAGTAATAAAGCTAACCCCTGAGTGGTTAAGCTCGCATTTCCCAGGGAGTTACGCTTGTTAACTCCCAGTCAATTCACATTCGTCTTCCAGCGGCCACAACGGGCTGGCACGCCGCAAAtt                                                                                                            >  2:694310/1‑140 (MQ=255)

                          cgcTCGTCTGACCGTTTCTAAGTAATAAAGCTAACCCCTGAGTGGTTAAGCTCGCATTTCCCAGGGAGTTACGCTTGTTAACTCCCAGTCAATTCACATTCGTCTTCCAGCGGCCACAACGGGCTGGCACGCCGCAAAtt                                                                                                            >  2:569387/1‑140 (MQ=255)

                                      cGTTTCTAAGTAATAAAGCTAACCCCTGAGTGGTTAAGCTCGCATTTCCCAGGGAGTTACGCTTGTTAACTCCCAGTCAATTCACATTCGTCTTCCAGCGGCCACAACGGGCTGGCACGCCGCAAATTACCATTCTCGgc                                                                                                <  2:943203/140‑1 (MQ=255)

                                                        cTAACCCCTGAGTGGTTAAGCTCGCATTTCCCAGGGAGTTACGCTTGTTAACTCCCAGTCAATTCACATTCGTCTTCCAGCGGCCACAACGGGCTGGCACGCCGCAAATTACCATTCTCGGCCGCCTGAATTCGCTgggg                                                                              <  2:52655/140‑1 (MQ=255)

                                                          aaCCCCTGAGTGGTTAAGCTCGCATTTCCCAGGGAGTTACGCTTGTTAACTCCCAGTCAATTCACATTCGTCTTCCAGCGGCCACAACGGGCTGGCACGCCGCAAATTACCATTCTCGGCCGCCTGAATTCGCTGGGGCa                                                                            >  1:1407928/1‑140 (MQ=255)

                                                           aCCCCTGAGTGGTTAAGCTCGCATTTCCCAGGGAGTTACGCTTGTTAACTCCCAGTCAATTCACATTCGTCTTCCAGCGGCCACAACGGGCTGGCACGCCGCAAATTACCATTCTCGGCCGCCTGAATTCGCTGGGGCAt                                                                           >  1:347909/1‑140 (MQ=255)

                                                           aCCCCTGAGTGGTTAAGCTCGCATTTCCCAGGGAGTTACGCTTGTTAACTCCCAGTCAATTCACATTCGTCTTCCAGCGGCCACAACGGGCTGGCACGCCGCAAATTACCATTCTCGGCCGCCTGAATTCGCTGGGGCAt                                                                           >  1:168595/1‑140 (MQ=255)

                                                           aCCCCTGAGTGGTTAAGCTCGCATTTCCCAGGGAGTTACGCTTGTTAACTCCCAGTCAATTCACATTCGTCTTCCAGCGGCCACAACGGGCTGGCACGCCGCAAATTACCATTCTCGGCCGCCTGAATTCGCTGGGGCAt                                                                           >  1:78685/1‑140 (MQ=255)

                                                                   gTGGTTAAGCTCGCATTTCCCAGGGAGTTACGCTTGTTAACTCCCAGTCAATTCACATTCGTCTTCCAGCGGCCACAACGGGCTGGCACGCCGCAAATTACCATTCTCGGCCGCCTGAATTCGCTGGGGCATCCCCGTAt                                                                   <  1:802753/140‑1 (MQ=255)

                                                                   gTGGTTAAGCTCGCATTTCCCAGGGAGTTACGCTTGTTAACTCCCAGTCAATTCACATTCGTCTTCCAGCGGCCACAACGGGCTGGCACGCCGCAAATTACCATTCTCGGCCGCCTGAATTCGCTGGGGCATCCCCGTAt                                                                   <  2:1723/140‑1 (MQ=255)

                                                                   gTGGTTAAGCTCGCATTTCCCAGGGAGTTACGCTTGTTAACTCCCAGTCAATTCACATTCGTCTTCCAGCGGCCACAACGGGCTGGCACGCCGCAAATTACCATTCTCGGCCGCCTGAATTCGCTGGGGCATCCCCGTAt                                                                   <  1:1350696/140‑1 (MQ=255)

                                                                   gTGGTTAAGCTCGCATTTCCCAGGGAGTTACGCTTGTTAACTCCCAGTCAATTCACATTCGTCTTCCAGCGGCCACAACGGGCTGGCACGCCGCAAATTACCATTCTCGGCCGCCTGAATTCGCTGGGGCATCCCCGTAt                                                                   <  1:272628/140‑1 (MQ=255)

                                                                   gTGGTTAAGCTCGCATTTCCCAGGGAGTTACGCTTGTTAACTCCCAGTCAATTCACATTCGTCTTCCAGCGGCCACAACGGGCTGGCACGCCGCAAATTACCATTCTCGGCCGCCTGAATTCGCTGGGGCATCCCCGTAt                                                                   <  1:740995/140‑1 (MQ=255)

                                                                   gTGGTTAAGCTCGCATTTCCCAGGGAGTTACGCTTGTTAACTCCCAGTCAATTCACATTCGTCTTCCAGCGGCCACAACGGGCTGGCACGCCGCAAATTACCATTCTCGGCCGCCTGAATTCGCTGGGGCATCCCCGTAt                                                                   <  1:636202/140‑1 (MQ=255)

                                                                   gTGGTTAAGCTCGCATTTCCCAGGGAGTTACGCTTGTTAACTCCCAGTCAATTCACAGTCGTCTTCCAGCGGCCACAACGGGCTGGCACGCCGCAAATTACCATTCTCGGCCGCCTGAATTCGCTGGGGCATCCCCGTAt                                                                   <  2:1485759/140‑1 (MQ=255)

                                                                   gTGGTTAAGCTCGCAGTTCCCAGGGAGTTACGCTTGTTAACTCCCAGTCAATTCACATTCGTCGTCCAGCGGCCACAACGGGCTGGCACGCCGCAAATTACCATTCTCGGCCGCCTGAATTCGCTGGGGCATCCCCGTAt                                                                   <  1:1531992/140‑1 (MQ=255)

                                                                   gTGGTAAAGCTCGCATTTCCCAGGGAGTTACGCTTGTTAACTCCCAGTCAATTCACATTCGTCTTCCAGCGGCCACAACGGGCTGGCACGCCGCAAATTACCAGTCTCGGCCGCCTGAATTCGCTGGGGCATCCCCGTAt                                                                   <  2:596266/140‑1 (MQ=255)

                                                                      gTTAAGCTCGCATTTCCCAGGGAGTTACGCTTGTTAACTCCCAGTCAATTCACATTCGTCTTCCAGCGGCCACAACGGGCTGGCACGCCGCAAATTACCATTCTCGGCCGCCTGAATTCGCTGGGGCATCCCCGTATCgg                                                                >  1:554307/1‑140 (MQ=255)

                                                                       ttAAGCTCGCATTTCCCAGGGAGTTACGCTTGTTAACTCCCAGTCAATTCACATTCGTCTTCCAGCGGCCACAACGGGCTGGCACGCCGCAACTTACCATTCTCGGCCGCCTGAATTCGCTGGGGCATCCCCGGATCGGt                                                               >  2:349627/1‑140 (MQ=255)

                                                                       ttAAGCTCGCATTTCCCAGGGAGTTACGCTTGTTAACTCCCAGTCAATTCACATTCGTCTTCCAGCGGCCACAACGGGCTGGCACGCCGCAAATTACCATTCTCGGCCGCCTGAATTCGCTGGGGCATCCCCGTCTCGGt                                                               >  2:860384/1‑140 (MQ=255)

                                                                       ttAAGCTCGCATTTCCCAGGGAGTTACGCTTGTTAACTCCCAGTCAATTCACATTCGTCTTCCAGCGGCCACAACGGGCTGGCACGCCGCAAATTACCATTCTCGGCCGCCTGAATTCGCTGGGGCATCCCCGTATCGGt                                                               >  2:271111/1‑140 (MQ=255)

                                                                       ttAAGCTCGCATTTCCCAGGGAGTTACGCTTGTTAACTCCCAGTCAATTCACATTCGTCTTCCAGCGGCCACAACGGGCTGGCACGCCGCAAATTACCATTCTCGGCCGCCTGAATTCGCTGGGGCATCCCCGTATCGGt                                                               >  2:1020457/1‑140 (MQ=255)

                                                                       ttAAGCTCGCATTTCCCAGGGAGTTACGCTTGTTAACTCCCAGTCAATTCACATTCGTCTTCCAGCGGCCACAACGGGCTGGCACGCCGCAAATTACCATTCTCGGCCGCCTGAATTCGCTGGGGCATCCCCGTATCGGt                                                               >  2:137110/1‑140 (MQ=255)

                                                                       ttAAGCTCGCATTTCCCAGGGAGTTACGCTTGTTAACTCCCAGTCAATTCACATTCGTCTTCCAGCGGCCACAACGGGCTGGCACGCCGCAAATTACCATTCTCGGCCGCCTGAATTCGCTGGGGCATCCCCGTATCGGt                                                               >  2:137014/1‑140 (MQ=255)

                                                                       ttAAGCTCGCATTTCCCAGGGAGTTACGCGTGTTAACTCCCAGTCAATTCACATTCGTCTTCCAGCGGCCACAACGGGCTGGCACGCCGCAAATTACCATTCTCGGCCGCCTGAATTCGCTGGGGCATCCCCGTATCGGt                                                               >  2:1174865/1‑140 (MQ=255)

                                                                            cTCGCATTTCCCAGGGAGTTACGCTTGTTAACTCCCAGTCAATTCACATTCGTCTTCCAGCAGCCACAACGGGCTGGCACGCCGCAAATTACCATTCTCGGCCGCCTGAATTCGCTGGGGCATCCCCGTATCGGTCTTAc                                                          >  1:833712/1‑140 (MQ=255)

                                                                                     cccAGGGAGTTACGCTTGTTAACTCCCAGTCAATTCACATTCGTCTTCCAGCGGCCACAACGGGCTGGCACGCCGCAAATTACCATTCTCGGCCGCCTGAATTCGCTGGGGCATCCCCGTATCGGTCTTACAGTCGCCaa                                                 >  1:12970/1‑140 (MQ=255)

                                                                                      ccAGGGAGTTACGCTTGTTAACTCCCAGTCAATTCACATTCGTCTTCCAGCGGCCACAACGGGCTGGCACGCCGCAAATTACCATTCTCGGCCGCCTGAATTCGCTGGGGCATCCCCGTAt                                                                   >  2:52886/1‑121 (MQ=255)

                                                                                      ccAGGGAGTTACGCTTGTTAACTCCCAGTCAATTCACATTCGTCTTCCAGCGGCCACAACGGGCTGGCACGCCGCAAATTACCATTCTCGGCCGCCTGAATTCGCTGGGGCATCCCCGTAt                                                                   <  1:52886/121‑1 (MQ=255)

                                                                                          ggAGTTACGCTTGTTAACTCCCAGTCAATTCACATTCGTCTTCCAGCGGCCACAACGGGCTGGCACGCCGCAAATTACCATTCTCGGCCGCCTGAATTCGCTGGGGCATCCCCGTATCGGTCTTACAGTCGCCAAGaaaa                                            >  2:1050614/1‑140 (MQ=255)

                                                                                                    ttGTTAACTCCCAGTCAATTCACATTCGTCTTCCAGCGGCCACAACGGGCTGGCACGCCGCAAATTACCATTCTCGGCCGCCTGAATTCGCTgggg                                                                              <  2:752115/96‑1 (MQ=255)

                                                                                                    ttGTTAACTCCCAGTCAATTCACATTCGTCTTCCAGCGGCCACAACGGGCTGGCACGCCGCAAATTACCATTCTCGGCCGCCTGAATTCGCTgggg                                                                              >  1:752115/1‑96 (MQ=255)

                                                                                                    ttGTTAACTCCCAGTCAATTCACATTCGTCTTCCAGCGGCCACAACGGGCTGGCACGCCGCAAATTACCATTCTCGGCCGCCTGAATTCGCTGGGGCATCCCCGTATCGGTCTTACAGTCGCCAAGAAAAACGTTCGAcg                                  <  1:184690/140‑1 (MQ=255)

                                                                                                      gTTAACTCCCAGTCCATTCACATGCGTCTTCCAGCGGCCACTACGGGCTGGCAGGCCGGAAAGTACCATTCTCGGCCGCCTGAATTCGCGGGGGCATCCCCGTATCGGTCGTACAGTCGCCACGAACAACGTGCGAcgcc                                >  2:132693/1‑139 (MQ=255)

                                                                                                      gTTAACTCCCAGTCAATTCACATTCGTCTTCCAGCGGCCACAACGGGCTGGCACGCCGCAAATTACCATTCTCGGCCGCCTGAATTCGCTGGGGCATCCCCGTATCGGTCTTACAGTCGCCAAGAAAAACGTTCGAcgcg                                >  1:592150/1‑140 (MQ=255)

                                                                                                      gTTAACTCCCAGTCAATTCACATTCGTCTTCCAGCGGCCACAACGGGCTGGCACGCCGCAAATTACCATTCTCGGCCGCCTGAATTCGCTGGGGCATCCCCGTATCGGTCTTACAGTCGCCAAGAAAAACGTTCGAcgcg                                >  1:1079190/1‑140 (MQ=255)

                                                                                                      gTTAACTCCCAGTCAATTCACATTCGTCTTCCAGCGGCCACAACGGGCTGGCACGCCGCAAATTACCATTCTCGGCCGCCTAAATTCGCTGGGGCATCCCCGTATCGGTCTTACAGTCGCCAAGAAAAACGTTCGAcgcg                                >  1:805100/1‑140 (MQ=255)

                                                                                                      gTTAACTCCCAGTCAATTCACAGTCGTCTTCCAGCGGCCACAACGGGCTGGCACGCCGCAAATTACCATTCTCGGCCGCCTGAATTCGCTGGGGCATCCCCGTATCGGTCTTACAGTCGCCAAGAAAAACGTTCGAcgcg                                <  1:1252690/140‑1 (MQ=255)

                                                                                                              ccAGTCCATTCACATTCGTATTCCAGCGGCCACAACGGGCTGGCACGCCGCAAATTACCATTCTCGGCCGCCTTAATTCTCTGGGGCATCCCCGTATCGGTATTACAGTCGCCAAGAAAAACGTTCGACGCGCCCATGaa                        <  1:342037/140‑1 (MQ=255)

                                                                                                              ccAGTCAATTCACATTCGTCTTCCAGCGGCCACAACGGGCTGGCACGCCGCAAATTACCATTCTCGGCCGCCTGAATTCGCTGGGGCATCCCCGTATCGGTCTTACAGTCGCCAAGAAAAACGTTCGACGCGCCCATGaa                        <  2:592150/140‑1 (MQ=255)

                                                                                                              ccAGTCAATTCACATTCGTCTTCCAGCGGCCACAACGGGCTGGCACGCCGCAAATTACCATTCTCGGCCGCCTAAATTCGCTGGGGCATCCCCGTATCGGTCTTACAGTCGCCAAGAAAAACGTTCGACGCGCCCATGaa                        <  2:805100/140‑1 (MQ=255)

                                                                                                                        cacaTTCGTCTTCCAGCGGCCACAACGGGCTGGCACGCCGCAAATTACCATTCTCGGCCGCCTGAATTCGCTGGGGCATCCCCGTAt                                                                   >  2:1360989/1‑87 (MQ=255)

                                                                                                                        cacaTTCGTCTTCCAGCGGCCACAACGGGCTGGCACGCCGCAAATTACCATTCTCGGCCGCCTGAATTCGCTGGGGCATCCCCGTAt                                                                   <  1:1360989/87‑1 (MQ=255)

                                                                                                                        cacaTTCGTCTTCCAGCGGCCACAACGGGCTGGCACGCCGCAAATTACCATTCTCGGCCGCCTGAATTCGCTGGGGCATCCCCGTATCGGTCTTACAGTCGCCAAGAAAAACGTTCGACGCGCCCATGAACGCAATCGGa              >  2:165554/1‑140 (MQ=255)

                                                                                                                        cacaTTCGTCTTCCAGCGGCCACAACGGGCTGGCACGCCGCAAATTACCATTCTCGGCCGCCTGAATTCGCTGGGGCATCCCCGTATCGGTCTTACAGTCGCCAAGAAAAACGTTCGACGCGCCCATGAACGCAATCGGa              >  2:1496800/1‑140 (MQ=255)

                                                                                                                                tCTTCCAGCGGCCACAACGGGCTGGCACGCCGCAAATTACCATTCTCGGCCGCCTGAATTCGCTGGGGCATCCCCGTATCGGTCTTACAGTCGCCAAGAAAAACGTTCGACGCGCCCATGAACGCAATCGGATTAAACGt      >  2:66613/1‑140 (MQ=255)

                                                                                                                                   tCCAGCGGCCACAACGGGCTGGCACGCCGCAAATTACCATTCTCGGCCGCCTGAATTCGCTGGGGCATCCCCGTATCGGTCTTACAGTCGCCAAGAAAAACGTTCGACGCGCCCATGAACGCAATCGGATTAAACGTCTg   <  2:78685/140‑1 (MQ=255)

                                                                                                                                   tCCAGCGGCCACAACGGGCTGGCACGCCGCAAATTACCATTCTCGGCCGCCTGAATTCGCTGGGGCATCCCCGTATCGGTCTTACAGTCGCCAAGAAAAACGTTCGACGCGCCCATGAACGCAATCGGATTAAACGTCTg   <  2:168595/140‑1 (MQ=255)

                                                                                                                                   tCCAGCGGCCACAACGGGCTGGCACGCCGCAAATTACCATTCTCGGCCGCCTGAATTCGCTGGGGCATCCCCGTATCGGTCTTACAGTCGCCAAGAAAAACGTTCGACGCGCCCATGAACGCAATCGGATTAAACGTCTg   <  2:347909/140‑1 (MQ=255)

                                                                                                                                    ccAGCGGCCACAACGGGCTGGCACGCCGCAAATTACCATTCTCGGCCGCCTGAATTCGCTGGGGCATCCCCGTATCGGTCTTACAGTCGCCAAGAAAAACGTTCGACGCGCCCATGAACGCAATCGGATTAAACGTCTGa  <  1:1496800/140‑1 (MQ=255)

                                                                                                                                    ccAGCGGCCACAACGGGCTGGCACGCCGCAAATTACCATTCTCGGCCGCCTGAATTCGCTGGGGCATCCCCGTATCGGTCTTACAGTCGCCAAGAAAAACGTTCGACGCGCCCATGAACGCAATCGGATTAAACGTCTGa  >  2:932333/1‑140 (MQ=255)

                                                                                                                                    ccAGCAGCCACAACGGGCTGGCACGCCGCAAATTACCATTCTCGGCCGCCTGAATTCGCTGGGGCATCCCCGTATCGGTCTTACAGTCGCCAAGAAAAACGTTCGACGCGCCCATGAACGCAATCGGATTAAACGTCTGa  <  2:833712/140‑1 (MQ=255)

                                                                                                                                    ccAGCAGCCACAACGGGCTGGCACGCCGCAAATTACCATTCTCGGCCGCCTGAATTCGCTGGGGCATCCCCGTATCGGTCTTACAGTCGCCAAGAAAAACGTTCGACGCGCCCATGAACGCAATCGGATTAAACGTCTGa  <  1:590736/140‑1 (MQ=255)

CTGGCACGTCGTCGTGCTAAAGGCCGCGCTCGTCTGACCGTTTCTAAGTAATAAAGCTAACCCCTGAGTGGTTAAGCTCGCATTTCCCAGGGAGTTACGCTTGTTAACTCCCAGTCAATTCACATTCGTCTTCCAGCAGCCACAACGGGCTGGCACGCCGCAAATTACCATTCTCGGCCGCCTGAATTCGCTGGGGCATCCCCGTATCGGTCTTACAGTCGCCAAGAAAAACGTTCGACGCGCCCATGAACGCAATCGGATTAAACGTCTGA  >  CP009273/3877786‑3878057

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 11 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A