Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1357 |
179.3 |
9500450 |
96.1% |
9129932 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,537,405 |
+GC |
intergenic (+61/‑394) |
b3407 → / → feoA |
hypothetical protein/ferrous iron transport protein A |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,537,404 | 1 | . | C | 100.0%
| 615.0
/ NA
| 192 | intergenic (+60/‑395) | b3407/feoA | hypothetical protein/ferrous iron transport protein A |
| Reads supporting (aligned to +/- strand): ref base . (0/0); new base C (118/74); total (118/74) |
| * | NC_000913 | 3,537,404 | 2 | . | G | 99.5%
| 617.0
/ ‑5.2
| 192 | intergenic (+60/‑395) | b3407/feoA | hypothetical protein/ferrous iron transport protein A |
| Reads supporting (aligned to +/- strand): ref base . (0/0); major base G (117/74); minor base T (1/0); total (118/74) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.93e-01 |
Only 100 of 205 total aligned reads displayed.
GCGCTGGCGGCGGCAATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCA‑‑C‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATA > NC_000913/3537312‑3537487
||
gcgcTGGCGGCGGCAATGGGCAAAAACCGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCa < 1:275055/93‑1 (MQ=255)
cgcTGGCGGCGGCAATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCA‑‑c < 2:1620019/93‑1 (MQ=255)
cTGGCGGCGGCAATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCA‑‑cgc < 2:1508499/93‑3 (MQ=255)
tGGCGGCGGCAATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCA‑‑cgcc > 1:2836255/1‑90 (MQ=255)
ggcAATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAAGCGTAGGGCAGATAAGGCGTTCACGC‑‑CGCATCTg < 1:814032/93‑1 (MQ=38)
gcAATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGC‑‑CGCATCTgg > 2:4533501/1‑93 (MQ=38)
cAATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTATGGCAGATAAGGCGTTCACGC‑‑CGCATCTGGc > 1:3256006/1‑93 (MQ=37)
cAATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGC‑‑CGCATCTGGc > 2:485078/1‑93 (MQ=37)
cAATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGC‑‑CGCATCTGGc < 2:2102796/93‑1 (MQ=37)
aaTGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGC‑‑CGCATCTGGCa > 1:3621792/1‑93 (MQ=37)
aTGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGC‑‑CGCATCTGGCaa > 2:3823528/1‑93 (MQ=37)
tGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGC‑‑CGCATCTGGCaac < 2:2033673/93‑1 (MQ=38)
gCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGC‑‑CGCATCTGGCaacgaa < 1:432949/93‑1 (MQ=38)
cAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGC‑‑CGCATCTGGCaacgaac > 1:2816214/1‑93 (MQ=37)
aaaaaaCGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGC‑‑CGCATCTGGCaacgaacg > 1:728355/1‑93 (MQ=37)
aaaaaaCGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGC‑‑CGCATCTGGCaacgaacg > 2:3594029/1‑93 (MQ=37)
aaaaaaCGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGC‑‑CGCATCTGGCaacgaacg < 1:2641814/93‑1 (MQ=37)
aaaaaCGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGC‑‑CGCATCTGGCAACGAACGc < 1:1837367/93‑1 (MQ=37)
aaaaaCGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGC‑‑CGCATCTGGCAACGAACGc < 1:3181852/93‑1 (MQ=37)
aaaCGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGC‑‑CGCATCTGGCAACGAACGCCt > 1:969731/1‑93 (MQ=37)
aaaCGTGAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGC‑‑CGCATCTGGCAACGAACGCCt < 1:2036669/93‑1 (MQ=37)
accGTTAAACGCCCGTATTGGCCTACGTTTGGAATTTGCACAAAACCGTAGGGCAGATAAGGCGTCCACGC‑‑CGCATCTGGCAACGAACGCCtt < 2:1745127/91‑1 (MQ=21)
aaCGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGC‑‑CGCATCTGGCAACGAACGCCtt < 1:176704/93‑1 (MQ=37)
aaCGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGC‑‑CGCATCTGGCAACGAACGCCtt > 2:2048869/1‑93 (MQ=37)
aCGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGC‑‑CGCATCTGGCAACGAACGCCTTg > 2:66866/1‑93 (MQ=37)
aCGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGC‑‑CGCATCTGGCAACGAACGCCTTg < 2:721798/93‑1 (MQ=37)
aCGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGC‑‑CGCATCTGGCAACGAACGCCTTg > 1:4042069/1‑93 (MQ=37)
aCGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGC‑‑CGCATCTGGCAACGAACGCCTTg > 1:3570934/1‑93 (MQ=37)
cGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGC‑‑CGCATCTGGCAACGAACGCCTTGc < 1:3800511/93‑1 (MQ=37)
tAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTg > 2:1326670/1‑93 (MQ=37)
tAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTg > 2:1940313/1‑93 (MQ=38)
aaCGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGAc < 1:894293/93‑1 (MQ=37)
acccccGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTGCACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACa < 2:3616818/90‑1 (MQ=37)
aCGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACa > 2:2211154/1‑93 (MQ=37)
aCGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGC‑‑CGCATCTGGCAACGAAAGCCTTGCCCGaaa > 2:14065/1‑91 (MQ=25)
cGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACAt < 1:271224/93‑1 (MQ=37)
cGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACAt > 1:1688435/1‑93 (MQ=38)
gCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATa > 1:200351/1‑93 (MQ=38)
ccccGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATa < 2:4259790/92‑1 (MQ=37)
ccGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATaaa < 1:4405524/93‑1 (MQ=37)
cGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATaaaa > 1:2105470/1‑93 (MQ=38)
cGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATaaaa < 2:1175278/93‑1 (MQ=37)
cGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATaaaa < 1:1949404/93‑1 (MQ=37)
cGTACGGGCATCCGGTTCGAATTTGCACGAAATGGTAGGGCAGATAAGGCGTTCACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATaaaa < 2:1351123/93‑1 (MQ=25)
gTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAg > 2:2962591/1‑93 (MQ=38)
gTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAg > 2:3220841/1‑93 (MQ=38)
tACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGt > 1:2239009/1‑93 (MQ=37)
tACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGt < 2:3133242/93‑1 (MQ=37)
aCTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTg > 2:4503574/1‑93 (MQ=38)
aCTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTg < 1:4348377/93‑1 (MQ=37)
aCTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTg > 2:3971548/1‑93 (MQ=37)
tGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGcc > 1:4527218/1‑93 (MQ=38)
gCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCgg > 2:2874228/1‑93 (MQ=38)
ccTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCggg > 2:1003014/1‑92 (MQ=37)
tACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGgaga > 2:2319984/1‑93 (MQ=38)
tACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGgaga > 2:588433/1‑93 (MQ=38)
tACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGgaga > 1:2350991/1‑93 (MQ=38)
aCGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGaa > 2:648745/1‑93 (MQ=38)
aCGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGaa < 1:1228752/93‑1 (MQ=37)
cGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAat > 2:1614782/1‑93 (MQ=38)
ggTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAata < 1:1467268/93‑1 (MQ=37)
gTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAatat > 1:2619962/1‑93 (MQ=38)
gTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAatat > 1:2534508/1‑93 (MQ=38)
gTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAatat < 2:4309117/93‑1 (MQ=37)
gTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAatat > 2:2240690/1‑93 (MQ=38)
gTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAatat < 1:2093027/93‑1 (MQ=37)
gAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGC‑‑CGCATCTTGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTcc < 1:68055/93‑1 (MQ=37)
gAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGGGAATATCTcc > 1:215802/1‑93 (MQ=37)
gAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTcc > 2:3085291/1‑93 (MQ=37)
aaTTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGACGGAGAATATCTCCg > 1:68080/1‑93 (MQ=37)
aTTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCgg > 2:4545163/1‑93 (MQ=38)
tttGCACGAAATCGTAGGGCAGATAAGGCGTTCACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGc > 1:1178409/1‑93 (MQ=38)
gCACGAAATCGTAGGGCAGAGAAGGCGTTCA‑‑CGGCGCATCTGGCAACGACCTCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGTAtt < 2:1677887/93‑1 (MQ=255)
cACGAAATCGTAGGGCAGATAAGGCGTTCACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCAttt < 1:4647581/93‑1 (MQ=38)
cACGAAATCGTAGGGCAGATAAGGCGTTCACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCAttt > 2:385177/1‑93 (MQ=38)
aCGAAATCGTAGGGCAGATAAGGCGTTCACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCAtttt < 2:4617142/93‑1 (MQ=38)
aCGAAATCGTAGGGCAGATAAGGCGTTCACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCAtttt > 1:4438533/1‑93 (MQ=38)
gAAATCGTAGGGCAGATAAGGCGTTCACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTa < 2:846267/93‑1 (MQ=38)
aaaTCGTAGGGCAGATAAGGCGTTCACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTAt < 2:798027/93‑1 (MQ=38)
aTCGTAGGGCAGATAAGGCGTTCACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGGGAGTATTTCCGGCAGTTTTAttt > 2:1799177/1‑92 (MQ=25)
aTCGTAGGGCAGATAAGGCGTTCACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTc > 2:2417101/1‑93 (MQ=38)
aTCGTAGGGCAGATAAGGCGTTCACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTc < 1:2307799/93‑1 (MQ=38)
tCGTAGGGCAGATAAGGCGTTCACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCCTTTTTATTcc > 2:283638/1‑93 (MQ=37)
gTAGGGCAGATAAGGCGTTCACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCcac > 1:3072790/1‑93 (MQ=38)
gTAGGGCAGATAAGGCGTTCACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCcac > 2:4722882/1‑93 (MQ=38)
tAGGGCAGATAAGGCGTTCACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCcaca > 2:3401879/1‑93 (MQ=38)
gggCAGATAAGGCGTTCACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGc < 1:1650669/93‑1 (MQ=38)
gggCAGATAAGGCGTTCACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGc > 1:159032/1‑93 (MQ=38)
gggCAGATAAGGCGTTCACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGc > 2:840891/1‑93 (MQ=38)
gggCAGATAAGGCGTTCACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGc > 2:1554270/1‑93 (MQ=38)
aGATAAGGCGTTCACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGGATTTTTTTTCCACAGCCaaa > 2:2568513/1‑93 (MQ=38)
aGATAAGGCGTTCACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCaaa > 1:3104053/1‑93 (MQ=38)
aaTAAGGCGTTCACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAAc < 1:2495954/92‑1 (MQ=38)
tAAGGCGTTCACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGCGAATATCTCCGGCATTTTTATTCCACAGCCAAACTc > 1:3716302/1‑93 (MQ=38)
ataGGCGTTCACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTc < 2:3259442/91‑1 (MQ=38)
aaGGCGTTCACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCa < 1:2431806/93‑1 (MQ=39)
aGGCGTTCACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCat < 1:333291/93‑1 (MQ=39)
aGGCGTTCACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCat > 1:3960820/1‑93 (MQ=255)
ggCGTTCACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCata > 2:2684515/1‑93 (MQ=255)
ggCGTTCACGC‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCata > 2:2089310/1‑93 (MQ=255)
||
GCGCTGGCGGCGGCAATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCA‑‑C‑‑CGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATA > NC_000913/3537312‑3537487
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GCGCTGGCGGCGGCAATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCA‑‑CCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAATATATTCCGG > NC_000913/3537312‑3537498
|
GCGCTGGCGGCGGCAATGGGCAAAAACCGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCA‑‑C < SRR4302544.277942/94‑1 (MQ=60)
GGCTGGCGGCGGCAATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCA‑‑CG < SRR4302544.2303377/94‑1 (MQ=60)
CTGGCGGCGGCAATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCA‑‑Cgcc > SRR4302544.2863652/1‑91 (MQ=60)
TGGCGGCGGCAATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCA‑‑Cgccg > SRR4302544.99617/1‑90 (MQ=60)
CGGCGGCAATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCAT > SRR4302544.4713882/1‑94 (MQ=60)
CGGCAATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTG < SRR4302544.3756944/94‑1 (MQ=60)
CGGCAATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTG > SRR4302544.1573760/1‑94 (MQ=60)
GGCAATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAAGCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGG < SRR4302544.821978/94‑1 (MQ=60)
GCAATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTATGGCAGATAAGGCGTTCACGCCGCATCTGGC > SRR4302544.3287136/1‑94 (MQ=60)
GCAATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGC > SRR4302544.3287135/1‑94 (MQ=60)
CAATGGTCAAAAAACTTTAAACGCACGTACTGGCCTAAGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCTTTCACTCCGCATCTGGCA > SRR4302544.3636673/1‑94 (MQ=60)
CAATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCA > SRR4302544.2853364/1‑94 (MQ=60)
CAATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCA > SRR4302544.3657879/1‑94 (MQ=60)
CAATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCA > SRR4302544.2138308/1‑94 (MQ=60)
AATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAA < SRR4302544.2999848/94‑1 (MQ=60)
ATTGGAAAAAAACGTAAAACCCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAAC < SRR4302544.353086/94‑1 (MQ=60)
TGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACG > SRR4302544.4041870/1‑94 (MQ=60)
GCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAAC < SRR4302544.437325/94‑1 (MQ=60)
GCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAAC > SRR4302544.2843402/1‑94 (MQ=60)
aaaaaatcgttaagccccctttCTGGCCTACGGTTCGATTTTGCACAAATTCGTAGGTAAGAAAAGGCGTTCACGCCGCATCTGGCAACGAACG < SRR4302544.1807267/72‑1 (MQ=15)
CAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACG > SRR4302544.735498/1‑94 (MQ=60)
CAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACG > SRR4302544.4524570/1‑94 (MQ=60)
AAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGC < SRR4302544.2667141/94‑1 (MQ=60)
AAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCC > SRR4302544.2764235/1‑94 (MQ=60)
AAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCC < SRR4302544.1855202/94‑1 (MQ=60)
AAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCC > SRR4302544.3901357/1‑94 (MQ=60)
AAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCC < SRR4302544.3212131/94‑1 (MQ=60)
AAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCT > SRR4302544.979239/1‑94 (MQ=60)
AAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCT < SRR4302544.2121170/94‑1 (MQ=60)
AAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTT > SRR4302544.834337/1‑94 (MQ=60)
AAACGTGAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTT < SRR4302544.2056347/94‑1 (MQ=60)
AACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTG > SRR4302544.3605173/1‑94 (MQ=60)
AACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTG > SRR4302544.4082324/1‑94 (MQ=60)
AACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTG < SRR4302544.2719100/94‑1 (MQ=60)
AACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTG < SRR4302544.178451/94‑1 (MQ=60)
CGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCC < SRR4302544.3838157/94‑1 (MQ=60)
TTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGGAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTG < SRR4302544.1200433/94‑1 (MQ=60)
AACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACA < SRR4302544.2411255/94‑1 (MQ=60)
AACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACA < SRR4302544.903140/94‑1 (MQ=60)
ACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACAT > SRR4302544.1705089/1‑94 (MQ=60)
CGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATA < SRR4302544.274082/94‑1 (MQ=60)
CGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATA > SRR4302544.202380/1‑94 (MQ=60)
CGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATA > SRR4302544.2073618/1‑94 (MQ=60)
CCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAA < SRR4302544.4450022/94‑1 (MQ=60)
CCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAA > SRR4302544.2125728/1‑94 (MQ=60)
CGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAG < SRR4302544.1968285/94‑1 (MQ=60)
GTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGT > SRR4302544.2260078/1‑94 (MQ=60)
TACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTG < SRR4302544.962159/94‑1 (MQ=60)
TACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTG < SRR4302544.4470509/94‑1 (MQ=60)
TACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTG > SRR4302544.1998809/1‑94 (MQ=60)
ACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGC < SRR4302544.4392572/94‑1 (MQ=60)
ACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGC > SRR4302544.4413520/1‑94 (MQ=60)
CTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCC > SRR4302544.4572518/1‑94 (MQ=60)
TGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCG > SRR4302544.4388234/1‑94 (MQ=60)
GCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGA > SRR4302544.3503035/1‑94 (MQ=60)
CTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGA > SRR4302544.2373265/1‑94 (MQ=60)
ACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAAT < SRR4302544.1240909/94‑1 (MQ=60)
CGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATA < SRR4302544.1668556/94‑1 (MQ=60)
CGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATA < SRR4302544.2469565/94‑1 (MQ=60)
GGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATAT > SRR4302544.2558854/1‑94 (MQ=60)
GGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATAT > SRR4302544.4193214/1‑94 (MQ=60)
GGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATAT > SRR4302544.2645098/1‑94 (MQ=60)
GGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATAT < SRR4302544.1481814/94‑1 (MQ=60)
GGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATAT < SRR4302544.481218/94‑1 (MQ=60)
GTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATC > SRR4302544.2823297/1‑94 (MQ=60)
GTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATC > SRR4302544.3742850/1‑94 (MQ=60)
GTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATC < SRR4302544.2113173/94‑1 (MQ=60)
CGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGGGAATATCTCC > SRR4302544.218028/1‑94 (MQ=60)
CGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCC > SRR4302544.1856497/1‑94 (MQ=60)
GAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTTGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCG < SRR4302544.68729/94‑1 (MQ=60)
GAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCG > SRR4302544.68753/1‑94 (MQ=60)
GAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCG < SRR4302544.725345/94‑1 (MQ=60)
GAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGACGGAGAATATCTCCG > SRR4302544.68754/1‑94 (MQ=60)
ATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGC > SRR4302544.1190152/1‑94 (MQ=60)
ATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCGTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGC < SRR4302544.2542253/94‑1 (MQ=60)
TTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTAGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCAT < SRR4302544.1746217/94‑1 (MQ=60)
TGCACGAAATCGTACGCCAGATAAGGCGATCACGCCGAATCTGGCAACGAACGCCTCGCCTGACATAAAAGTGCCGGAGAAAATCTCCGGCATT < SRR4302544.3155978/94‑1 (MQ=60)
GCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTT > SRR4302544.2044145/1‑94 (MQ=60)
CACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTT < SRR4302544.4693593/94‑1 (MQ=60)
CACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTT > SRR4302544.4483285/1‑94 (MQ=60)
ACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTT < SRR4302544.2663361/94‑1 (MQ=60)
ACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTT < SRR4302544.382597/94‑1 (MQ=60)
CGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTA > SRR4302544.3117316/1‑94 (MQ=60)
GAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTAT > SRR4302544.4613641/1‑94 (MQ=60)
ATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCC > SRR4302544.4460602/1‑94 (MQ=60)
ATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCC < SRR4302544.2329613/94‑1 (MQ=60)
ATCGTAGGGCAGAGAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCC < SRR4302544.2329614/94‑1 (MQ=60)
TCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCA > SRR4302544.2610292/1‑94 (MQ=60)
CGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCAC > SRR4302544.3102075/1‑94 (MQ=60)
AGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGC > SRR4302544.160589/1‑94 (MQ=60)
GGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCC < SRR4302544.735627/94‑1 (MQ=60)
GGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCC < SRR4302544.1666953/94‑1 (MQ=60)
CAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAA > SRR4302544.3133597/1‑94 (MQ=60)
AGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAAC > SRR4302544.2225902/1‑94 (MQ=60)
AGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAAC < SRR4302544.1419706/94‑1 (MQ=60)
AATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACT < SRR4302544.2519867/94‑1 (MQ=60)
ATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGCGAATATCTCCGGCATTTTTATTCCACAGCCAAACTC > SRR4302544.3753269/1‑94 (MQ=60)
ATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTC > SRR4302544.1626394/1‑94 (MQ=60)
AAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCAT > SRR4302544.332939/1‑94 (MQ=60)
AAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCAT > SRR4302544.4000207/1‑94 (MQ=60)
AAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCAT < SRR4302544.2454974/94‑1 (MQ=60)
AAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCAT > SRR4302544.1818098/1‑94 (MQ=60)
AAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGACGGAGAATATTTTCCGCACTTTTTTTCCACAGACAAACTCAA > SRR4302544.2572159/1‑94 (MQ=42)
AGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATA < SRR4302544.336755/94‑1 (MQ=60)
GGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCGGGCATTTTTATTCCACAGCCAAACTCATAA > SRR4302544.4510233/1‑94 (MQ=60)
GGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAA > SRR4302544.4510234/1‑94 (MQ=60)
CGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAATA > SRR4302544.1244424/1‑94 (MQ=60)
CGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAATA < SRR4302544.4664705/94‑1 (MQ=60)
GTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTTCGGGATTTTTATTCCACAGCCAAACTCATAATAT > SRR4302544.1783820/1‑94 (MQ=60)
GTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAAATCATAATAT > SRR4302544.3485166/1‑94 (MQ=60)
tcacgCCGCAGCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAATATAT < SRR4302544.1783831/89‑1 (MQ=60)
CG‑‑CCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCCTTTTTATTCCACAGCCAAACTCATAATATATTCC > SRR4302544.2698176/1‑94 (MQ=60)
CG‑‑CCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAATATATTCC < SRR4302544.2780924/94‑1 (MQ=60)
G‑‑CCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAATATATTCCG < SRR4302544.2736569/94‑1 (MQ=60)
G‑‑CCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGGGCCGGAGAATATCTCCGGCATTTTTATTCCTCAGCCAAACTCATAATATATTCCG < SRR4302544.2467082/94‑1 (MQ=60)
CCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAATATATTCCGG > SRR4302544.4417524/1‑94 (MQ=60)
CCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTACGGCATTTTTATTCCACAGCCAAACTCATAATATATTCCGG > SRR4302544.4747340/1‑94 (MQ=60)
|
GCGCTGGCGGCGGCAATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCA‑‑CCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAATATATTCCGG > NC_000913/3537312‑3537498
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
