Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1475 |
266.7 |
13469680 |
98.2% |
13227225 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,537,405 |
+GC |
intergenic (+61/‑394) |
b3407 → / → feoA |
hypothetical protein/ferrous iron transport protein A |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,537,404 | 1 | . | C | 99.6%
| 825.8
/ ‑5.9
| 258 | intergenic (+60/‑395) | b3407/feoA | hypothetical protein/ferrous iron transport protein A |
| Reads supporting (aligned to +/- strand): ref base . (0/1); major base C (133/122); minor base T (0/1); total (133/125) |
| Fisher's exact test for biased strand distribution p-value = 4.80e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
| * | NC_000913 | 3,537,404 | 2 | . | G | 99.6%
| 830.7
/ ‑4.8
| 258 | intergenic (+60/‑395) | b3407/feoA | hypothetical protein/ferrous iron transport protein A |
| Reads supporting (aligned to +/- strand): ref base . (0/1); major base G (132/124); minor base T (1/0); total (133/125) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.90e-01 |
Only 100 of 283 total aligned reads displayed.
GCGCTGGCGGCGGCAATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCA‑‑C‑C‑GCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCAT > NC_000913/3537312‑3537486
||
cgcTGGCGGCGGCAATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCA‑‑c > 2:1781796/1‑93 (MQ=255)
cgcTGGCGGCGGCAATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCA‑‑c > 2:3890975/1‑93 (MQ=255)
gcTGGCGGCGGCAATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCA‑‑cg > 1:941493/1‑92 (MQ=255)
cTGGCGGCGGCAATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCA‑‑cgc < 1:4195117/93‑3 (MQ=255)
ggcggcggcAGTGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCA‑‑cgccg < 1:3900514/93‑5 (MQ=255)
ggcggcggcAATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCA‑‑cgccg < 1:5840236/93‑5 (MQ=255)
ggcggcggcAATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCA‑‑cgccg > 2:4620130/1‑89 (MQ=255)
ggcggcggcAATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCA‑‑cgccg > 1:1900724/1‑89 (MQ=255)
ggcAATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGC‑C‑GCATCTg > 1:3990944/1‑93 (MQ=38)
aaTGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGC‑C‑GCATCTGGCa > 1:2777413/1‑93 (MQ=37)
aaTGGGAAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGC‑C‑GCATCTGGCa < 1:5762673/93‑1 (MQ=37)
aTGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGC‑C‑GCATCTGGCaa > 2:4003725/1‑93 (MQ=37)
tGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGC‑C‑GCATCTGGCaac > 1:2941682/1‑93 (MQ=37)
ggCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGC‑C‑GCATCTGGCaacga < 2:2880458/93‑1 (MQ=38)
gCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGC‑C‑GCATCTGGCaacgaa < 2:6594218/93‑1 (MQ=38)
cAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGC‑C‑GCATCTGGCaacgaac < 2:1107330/93‑1 (MQ=37)
aaaaaaCGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGC‑C‑GCATCTGGCaacgaacg > 2:4791266/1‑93 (MQ=37)
aaaaaCGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGC‑C‑GCATCTGGCAACGAACGc > 1:53248/1‑93 (MQ=37)
aaaaaCGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGC‑C‑GCATCTGGCAACGAACGc > 1:5157604/1‑93 (MQ=37)
aaaaaCGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGC‑C‑GCATCTGGCAACGAACGc > 1:3206863/1‑93 (MQ=37)
aaaaaCGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGC‑C‑GCATCTGGCAACGAACGc > 1:338996/1‑93 (MQ=37)
aaaaCGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGC‑C‑GCATCTGGCCACGAACGcc > 1:6249906/1‑93 (MQ=37)
aaaaCGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGC‑C‑GCATCTGGCAACGAACGcc > 1:5705026/1‑93 (MQ=37)
aaaCGTTAACCGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGC‑C‑GCATCTGGCAACGAACGCCt < 1:3170630/93‑1 (MQ=37)
aaaCGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCATGC‑C‑GCATCTGGAAACGAACGCCt < 2:193431/93‑1 (MQ=38)
aaaCGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGC‑C‑GCATCTGGCAACGAACGCCt < 2:785351/93‑1 (MQ=37)
aaaCGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGC‑C‑GCATCTGGCAACGAACGCCt < 2:559653/93‑1 (MQ=37)
aaaCGTTAAACGCCCGTACTGGCCTACGGCTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGC‑C‑GCATCTGGCAACGAACGCCt < 2:4290483/93‑1 (MQ=37)
aaCGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGC‑C‑GCATCTGGCAACGAACGCCtt > 2:3544080/1‑93 (MQ=37)
aaCGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGC‑C‑GCATCTGGCAACGAACGCCtt < 2:6356491/93‑1 (MQ=37)
aCGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGC‑C‑GCATCTGGCAACGAACGCCTTg > 1:2310889/1‑93 (MQ=37)
cGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGC‑C‑GCATCTGGCAACGAACGCCTTGc > 2:3161679/1‑93 (MQ=37)
cGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGC‑C‑GCATCTGGCAACGAACGCCTTGc > 2:5413114/1‑93 (MQ=37)
gTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGC‑C‑GCATCTGGCAACGAACGCCTTGcc < 2:6262046/93‑1 (MQ=37)
ttAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGC‑C‑GCATCTGGCAACGAACGCCTTGCCt > 2:6053175/1‑93 (MQ=38)
aagcGCCCGTACTGCCGTACGGTTCAATTTAGCACGAATTCGGAGGGCAGATAGGGCGTTCACGC‑C‑GCATCTGGCAACGAACGCCTTGCCTGa < 2:2304466/90‑1 (MQ=16)
aaCGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGC‑C‑GCATCTGGCAACGAACGCCTTGCCTGAc > 2:4228074/1‑93 (MQ=37)
aaCGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGC‑C‑GCATCTGGCAACGAACGCCTTGCCTGAc > 2:503491/1‑93 (MQ=38)
aaCGCCCAGACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGC‑C‑GCATCTGGCAACGAACGCCTTGCCTGAc > 1:6609044/1‑93 (MQ=37)
aCGCCGTTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGC‑C‑GCATCTGGCAACGAACGCCTTGCCTGACa < 2:2799470/93‑1 (MQ=25)
aCGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGC‑C‑GCATCTGGCAACGAACGCCTTGCCTGACa < 1:4627918/93‑1 (MQ=37)
cccGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGC‑C‑GCATCTGGCAACGAACGCCTTGCCTCACAtta > 1:489853/1‑91 (MQ=37)
ccGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGC‑C‑GCATCTGGCAACGAACGCCTTGCCTGACATaaa > 2:6520883/1‑93 (MQ=38)
gTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGC‑C‑GCATCTGGCAACGAACGCCTTGCCTGACATAAAAg > 1:5993073/1‑93 (MQ=37)
gTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGC‑C‑GCATCTGGCAACGAACGCCTTGCCTGACATAAAAg < 2:4476671/93‑1 (MQ=37)
tACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGC‑C‑GCATCTGGCAACGAACGCCTTGCCTGACATAAAAGt < 1:537905/93‑1 (MQ=37)
aCTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGC‑C‑GCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTg < 2:3655830/93‑1 (MQ=37)
aCTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGC‑C‑GCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTg > 2:2215938/1‑93 (MQ=37)
cTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGC‑C‑GCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGc > 1:6343286/1‑93 (MQ=38)
cTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGC‑C‑GCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGc > 2:554081/1‑93 (MQ=38)
cTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGC‑C‑GCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGc < 1:2434961/93‑1 (MQ=37)
tGGCCTACGGTTCGAATTTGCACGAAATCGTAGGTCAGATAAGGCGTTCACGC‑C‑GCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGcc < 1:2531837/93‑1 (MQ=37)
tGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGC‑C‑GCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGcc < 1:2080163/93‑1 (MQ=37)
tGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGC‑C‑GCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGcc > 2:1691501/1‑93 (MQ=38)
ggCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGC‑C‑GCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCg > 2:5322414/1‑93 (MQ=37)
tACGGTTCTAATTTGCACGAAATCGTGGGGCAAATAAGGCGTTCACGC‑C‑GCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGgaga < 1:1552265/93‑1 (MQ=37)
tACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGC‑C‑GCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGggga > 2:1297606/1‑93 (MQ=37)
tACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGC‑C‑GCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGgaga > 2:2232581/1‑93 (MQ=38)
tACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGC‑C‑GCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGgaga > 2:2633005/1‑93 (MQ=37)
tACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGC‑C‑GCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGgaga > 2:4855727/1‑93 (MQ=38)
tACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGC‑C‑GCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGgaga < 1:1075096/93‑1 (MQ=37)
tACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGC‑C‑GCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGgaga > 1:1726411/1‑93 (MQ=38)
aCGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGC‑C‑GCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGaa < 2:2992182/93‑1 (MQ=37)
aCGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGC‑C‑GCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGaa < 2:310240/93‑1 (MQ=37)
gTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGC‑C‑GCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGGGAatat > 2:32916/1‑93 (MQ=37)
gTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGC‑C‑GCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAatat > 1:1674507/1‑93 (MQ=38)
gTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGC‑C‑GCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAatat > 2:5213723/1‑93 (MQ=38)
cGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGC‑C‑GCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATAtctc > 1:1311455/1‑93 (MQ=38)
gAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGC‑C‑GCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTcc < 2:6681520/93‑1 (MQ=37)
gAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGC‑C‑GCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTcc > 1:5897069/1‑93 (MQ=38)
gAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCA‑‑CGCGGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTcc < 1:6662093/93‑1 (MQ=37)
ttGCACGAAATCGTAGGGCAGATAAGGCGTTCACGC‑C‑GCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCa < 2:3776455/93‑1 (MQ=38)
tGCACGAAATCGTAGGGCAGATAAGGCGTTCACGC‑C‑GCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCAt < 1:3014121/93‑1 (MQ=38)
cACGAAATCGTAGGGCAGATAAGGCGTTCACGC‑C‑GCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCAttt < 1:4120386/93‑1 (MQ=38)
cACGAAATCGTAGGGCAGATAAGGCGTTCACGC‑C‑GCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCAGAGAATATCTCCGGCAttt < 1:6537442/93‑1 (MQ=37)
aCGAAATCGTAGGGCAGATAAGGCGTTCACGC‑C‑GCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCAtttt < 1:1770455/93‑1 (MQ=38)
cGAAATCGTAGGGCAGATAAGGCGTTCACGC‑C‑GCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCCGCCttttt > 1:215811/1‑93 (MQ=37)
aaaTCGTAGGGCAGATAAGGCGTTCACGC‑C‑GCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTAt > 1:1493865/1‑93 (MQ=38)
aaTCGTAGGGCAGATAAGGCGTTCACGC‑C‑GCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTAtt < 2:1867626/93‑1 (MQ=38)
aaTCGTAGGGCAGATAAGGCGTTCACGC‑C‑GCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTAtt > 1:860460/1‑93 (MQ=38)
aaTCGTAGGGAAGATAAGGCGTTCACGC‑C‑GCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTAtt < 1:82027/93‑1 (MQ=38)
aTCGTAGGGCAGATAAGGCGTTCACGC‑C‑GCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTc < 2:5105284/93‑1 (MQ=38)
tCGTAGGGCAGATAAGGCGTTCACGC‑C‑GCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTcc > 1:1108771/1‑93 (MQ=38)
tCGTAGGGCAGATAAGGCGTTCACGC‑C‑GCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTcc < 2:5877512/93‑1 (MQ=38)
aggTAGGCCAGATACGGCGTTCACGC‑C‑GCATCTGGCAACGAACGCATTGCCTGACATAAAACTGCCGGAGAATATCTCCGGCATTTTTATTcc < 1:3713527/91‑1 (MQ=25)
tAGGGCAGATAAGGCGTTCACGC‑C‑GCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCCGAGAATATCTCCGGCATTTTTATTCcaca > 2:5757712/1‑93 (MQ=38)
aGGGCAGATAAGGCGTTCACGC‑C‑GCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAg > 2:1645011/1‑93 (MQ=38)
gggCAGATAAGGCGTTCACGC‑C‑GCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTACGGCATTTTTATTCCACAGc > 1:2681439/1‑93 (MQ=38)
ggCAGATAAGGCGTTCACGC‑C‑GCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGcc > 2:5342805/1‑93 (MQ=38)
gCAGATAAGGCGTTCACGC‑C‑GCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCa < 2:3379896/93‑1 (MQ=38)
aGATAAGGCGTTCACGC‑C‑GCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCaaa < 1:1838252/93‑1 (MQ=38)
aGATAAGGCGTTCACGC‑C‑GCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCaaa > 2:4427472/1‑93 (MQ=38)
gATAAGGCGTTCACGC‑C‑GCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGGATATCTCCCGCATTTTTATTCCACAGCCAAAc > 2:4756386/1‑93 (MQ=37)
gATAAGGCGTTCACGC‑C‑GCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAAc < 1:6464487/93‑1 (MQ=38)
tAAGGCGTTCACGC‑C‑GCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTc < 1:6116415/93‑1 (MQ=38)
tAAGGCGTTCACGC‑C‑GCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTc > 2:2028966/1‑93 (MQ=39)
tAAGGCGTTCACGC‑C‑GCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTc > 1:3806579/1‑93 (MQ=39)
aaGGCGTTCACGC‑C‑GCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCa > 2:5712255/1‑93 (MQ=39)
aaGGCGTTCACGC‑C‑GCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCa < 2:1243892/93‑1 (MQ=39)
aGGCGTTCACGC‑C‑GCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCat > 2:1573508/1‑93 (MQ=255)
||
GCGCTGGCGGCGGCAATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCA‑‑C‑C‑GCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCAT > NC_000913/3537312‑3537486
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CGCTGGCGGCGGCAATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CA‑‑CCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAATATATTCCG > NC_000913/3537313‑3537497
|
CGCTGGCGGCGGCAATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CA‑‑CG > SRR4302536.969267/1‑94 (MQ=60)
CGCTGGCGGCGGCAATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CA‑‑CG < SRR4302536.1591877/94‑1 (MQ=60)
CTGGCGGCGGCAATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CA‑‑Cgcc < SRR4302536.4319793/94‑4 (MQ=60)
CTGGCGGCGGCAATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CA‑‑Cgcc < SRR4302536.3290619/94‑4 (MQ=60)
TGGCGGCGGCAATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CA‑‑Cgccg > SRR4302536.262189/1‑90 (MQ=60)
TGGCGGCGGCAATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CA‑‑Cgccg > SRR4302536.1957959/1‑90 (MQ=60)
GGCGGCGGCAGTGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CA‑‑Cgccgc < SRR4302536.4016470/94‑6 (MQ=60)
GGCGGCGGCAATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CA‑‑Cgccgc > SRR4302536.4472565/1‑89 (MQ=60)
GGCGGCGGCAATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CA‑‑Cgccgc < SRR4302536.6014239/94‑6 (MQ=60)
GCGGCAATGGGCAAAAAACTTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGCCGCATCT < SRR4302536.3986367/94‑1 (MQ=60)
GCGGCAATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGTAAGATAAGGCGTT‑‑CACGCCGCATCT < SRR4302536.2832767/94‑1 (MQ=60)
GCGGCAATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGCCGCATCT < SRR4302536.3086014/94‑1 (MQ=60)
GCGGCAATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGCCGCATCT < SRR4302536.2360314/94‑1 (MQ=60)
GCGGCAATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGCCGCATCT < SRR4302536.386942/94‑1 (MQ=60)
CGGCAATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGCCGCATCTG < SRR4302536.5526351/94‑1 (MQ=60)
CGGCAATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGCCGCATCTG > SRR4302536.4109392/1‑94 (MQ=60)
CAATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGCCGCATCTGGCA > SRR4302536.2859931/1‑94 (MQ=60)
CAATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGCTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGCCGCATCTGGCA > SRR4302536.2409820/1‑94 (MQ=60)
AATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGCCGCATCTGGCAA > SRR4302536.2533619/1‑94 (MQ=60)
AATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGCCGCATCTGGCAA < SRR4302536.1782865/94‑1 (MQ=60)
AATGGGAAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGCCGCATCTGGCAA < SRR4302536.5934099/94‑1 (MQ=60)
ATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGCCGCATCTGGCAAC > SRR4302536.3028428/1‑94 (MQ=60)
TGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGCCGCATCTGGCAACG > SRR4302536.2265179/1‑94 (MQ=60)
GGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGCCGCATCTGGCAACGA > SRR4302536.2151681/1‑94 (MQ=60)
GCAAAAAACGTTAAACGCCGGTACTGGCATACGGTTCGAATTTGCACGAAATCGTAGGGCAGAAAAGGCGTT‑‑CACGCCGCATCTGGCAACGAAC < SRR4302536.185005/94‑1 (MQ=60)
GCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGCCGCATCTGGCAACGAAC < SRR4302536.6842335/94‑1 (MQ=60)
GAAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGCCGCATCTGGCAACGAAC < SRR4302536.4046908/94‑1 (MQ=60)
CAAAAAACGTTAAACGCCCGTTCTGGCCTACGGTTCGAATTTGCAGGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGCCGCATCTGGCAACGAACG < SRR4302536.6406374/94‑1 (MQ=60)
AAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGCCGCATCTGGCAACGAACGC > SRR4302536.6371171/1‑94 (MQ=60)
AAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGCCGCATCTGGCAACGAACGC > SRR4302536.347966/1‑94 (MQ=60)
AAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGCCGCATCTGGCAACGAACGC > SRR4302536.5311495/1‑94 (MQ=60)
AAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGCCGCATCTGGCAACGAACGC > SRR4302536.54726/1‑94 (MQ=60)
AAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGCCGCATCTGGCAACGAACGC > SRR4302536.3300923/1‑94 (MQ=60)
AAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGCCGCATCTGGCCACGAACGCC > SRR4302536.6436099/1‑94 (MQ=60)
AAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGCCGCATCTGGCAACGAACGCC > SRR4302536.3844583/1‑94 (MQ=60)
AAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGCCGCATCTGGCAACGAACGCC > SRR4302536.1586981/1‑94 (MQ=60)
AAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGCCGCATCTGGCAACGAACGCC > SRR4302536.1998081/1‑94 (MQ=60)
AAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGCCGCATCTGGCAACGAACGCC > SRR4302536.5874683/1‑94 (MQ=60)
AAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTACGGCAGATAAGGCGTT‑‑CACGCCGCATCTGGCAACGCACGCC > SRR4302536.6023928/1‑94 (MQ=60)
AAAAACGTTAAACGCCCGTACTGGACTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGCCGCATCTCGCAACGAACGCC > SRR4302536.1941355/1‑94 (MQ=60)
AAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGCCGCATCTGGCAACGAACGCCT < SRR4302536.4063536/94‑1 (MQ=60)
AAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGCCGCATCTGGCAACGAACGCCT > SRR4302536.917502/1‑94 (MQ=60)
AAACGTTAAGCCCCCGTACTGGCTGACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAGGGCGTC‑‑CACGCCGCATCTGGCAACGAACGCCTT < SRR4302536.2412424/94‑1 (MQ=60)
AAACGTTAACCGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGCCGCATCTGGCAACGAACGCCTT < SRR4302536.3263527/94‑1 (MQ=60)
AAACGTTAACCGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGCCGCATCTGGCAACGAACGCCTT > SRR4302536.6739526/1‑94 (MQ=60)
AAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGCCGCATCTGGCAACGAACGCCTT < SRR4302536.723247/94‑1 (MQ=60)
AAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGCCGCATCTGGCAACGAACGCCTT > SRR4302536.2950828/1‑94 (MQ=60)
AACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGCCGCATCTGGCAACGAACGCCTTG > SRR4302536.719697/1‑94 (MQ=60)
AACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGCCGCATCTGGCAACGAACGCCTTG > SRR4302536.2381024/1‑94 (MQ=60)
AACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGCCGCATCTGGCAACGAACGCCTTG < SRR4302536.3366915/94‑1 (MQ=60)
AACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGCCGCATCTGGCAACGAACGCCTTG > SRR4302536.296843/1‑94 (MQ=60)
AACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGCCGCATCTGGCAACGAACGCCTTG < SRR4302536.1781526/94‑1 (MQ=60)
GTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCT < SRR4302536.661275/94‑1 (MQ=60)
TAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGCCGCATCTGGCAACGAACGTCTTGCCTGA > SRR4302536.5511373/1‑94 (MQ=60)
TAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGA > SRR4302536.1116153/1‑94 (MQ=60)
AAACGCCCAGACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGAC > SRR4302536.6805564/1‑94 (MQ=60)
AACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACA > SRR4302536.4909151/1‑94 (MQ=60)
ACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACAT < SRR4302536.4766981/94‑1 (MQ=60)
ACGCCCGTACTGGCCCACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACAT > SRR4302536.4656188/1‑94 (MQ=60)
GGCCCGTACTGGCCAACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTC‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATA < SRR4302536.677784/94‑1 (MQ=60)
GCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTCACATTA > SRR4302536.502542/1‑94 (MQ=60)
CCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAA > SRR4302536.5407541/1‑94 (MQ=60)
CCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAA > SRR4302536.1443996/1‑94 (MQ=60)
CGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAG > SRR4302536.6171728/1‑94 (MQ=60)
GTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGT < SRR4302536.3187769/94‑1 (MQ=60)
GTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGT > SRR4302536.5057072/1‑94 (MQ=60)
GTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGT < SRR4302536.967474/94‑1 (MQ=60)
GTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGT < SRR4302536.4264119/94‑1 (MQ=60)
TACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTG < SRR4302536.551637/94‑1 (MQ=60)
TACTGGCCTACGGTTCAAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTG < SRR4302536.4981418/94‑1 (MQ=60)
ACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGC > SRR4302536.6532267/1‑94 (MQ=60)
CTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCC < SRR4302536.2508578/94‑1 (MQ=60)
TGGCCTACGGTTCGAATTTGCACGAAATCGTAGGTCAGATAAGGCGTT‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCG < SRR4302536.2608137/94‑1 (MQ=60)
TGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCG < SRR4302536.2142798/94‑1 (MQ=60)
TGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCG > SRR4302536.1307206/1‑94 (MQ=60)
TGGCATACGGTTCGAATTTGCAGGAAATCGTAGGGCAGATAAGGCGTA‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCG < SRR4302536.6235599/94‑1 (MQ=60)
GGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGG > SRR4302536.1856833/1‑94 (MQ=60)
CCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAG < SRR4302536.2590330/94‑1 (MQ=60)
CTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGA > SRR4302536.1776260/1‑94 (MQ=60)
TACGGTTCTAATTTGCACGAAATCGTGGGGCAAATAAGGCGTT‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAA < SRR4302536.1597880/94‑1 (MQ=60)
TACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAA < SRR4302536.4174445/94‑1 (MQ=60)
TACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAA > SRR4302536.4194779/1‑94 (MQ=60)
TACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAA < SRR4302536.3959711/94‑1 (MQ=60)
TACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAA < SRR4302536.1107273/94‑1 (MQ=60)
CGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATA < SRR4302536.5350404/94‑1 (MQ=60)
GGTTCGAATTTGCACGAAATCGTAGGGGAGATAAGGCGTT‑‑CACGCCGCATCTCGCAACGAACGCCTTGCCTGACATAAAAGTGgctgcggacat > SRR4302536.5806786/1‑83 (MQ=60)
GGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATAT > SRR4302536.1723070/1‑94 (MQ=60)
GGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATAT < SRR4302536.849850/94‑1 (MQ=60)
GGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATAT < SRR4302536.3211570/94‑1 (MQ=60)
GTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATC > SRR4302536.4522449/1‑94 (MQ=60)
GTGCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATC < SRR4302536.6146117/94‑1 (MQ=60)
TTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGCATATCT > SRR4302536.5981113/1‑94 (MQ=60)
TTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCT < SRR4302536.1668496/94‑1 (MQ=60)
TTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCT > SRR4302536.3288141/1‑94 (MQ=60)
TCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTC > SRR4302536.1350587/1‑94 (MQ=60)
TCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTC > SRR4302536.1922731/1‑94 (MQ=60)
CGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCC > SRR4302536.6072656/1‑94 (MQ=60)
GAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGCGGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCG < SRR4302536.6860092/94‑1 (MQ=60)
GAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCG > SRR4302536.870103/1‑94 (MQ=60)
GAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCG < SRR4302536.3839456/94‑1 (MQ=60)
AATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGG > SRR4302536.2807733/1‑94 (MQ=60)
AATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGCCGCATCTGGCAACGAACACCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGG > SRR4302536.5876951/1‑94 (MQ=60)
TGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATT < SRR4302536.3102726/94‑1 (MQ=60)
TGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATT > SRR4302536.6246846/1‑94 (MQ=60)
TGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATT > SRR4302536.61498/1‑94 (MQ=60)
GCACGAAATCGTAGGGCGGATAAGGCTTT‑‑CACGCCGCACCTGGCAACGACCGCCTTGCCTGACATAAAAGTGCGGGAGAATATCGCCGGCATTT < SRR4302536.6715960/94‑1 (MQ=60)
CACGAAATCGTAGGGCGGATAAGGCGTTCCCG‑‑CCGCATCTGGCAACGAACGCCTTGCCTGACAACAAAGGGCCGGAGAATATTTCCGGCATTTT > SRR4302536.6792561/1‑94 (MQ=50)
CACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTT > SRR4302536.2805931/1‑94 (MQ=60)
CACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTT < SRR4302536.4242549/94‑1 (MQ=60)
CACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCAGAGAATATCTCCGGCATTTT < SRR4302536.6732157/94‑1 (MQ=60)
agaAAATCGTGGGGCAGATAAGGCGTG‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTT < SRR4302536.1527706/91‑1 (MQ=60)
ACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTT > SRR4302536.5518961/1‑94 (MQ=60)
ACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTT < SRR4302536.1824031/94‑1 (MQ=60)
ACGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCCGCCTTTTT > SRR4302536.221536/1‑94 (MQ=60)
CGAAATCGTAGGGCAGATAAGGCGTT‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTA > SRR4302536.3435776/1‑94 (MQ=60)
GAAATCGTAGGGCAGATAAGGCGTT‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTAT > SRR4302536.5953748/1‑94 (MQ=60)
GAAATCGTAGGGCAGATAAGGCGTT‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTAT < SRR4302536.6489262/94‑1 (MQ=60)
GAAATCGTAGGGCAGATAAGGCGTT‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTAT > SRR4302536.1537979/1‑94 (MQ=60)
AAATCGTAGGGCAGATAAGGCGTT‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATT > SRR4302536.885755/1‑94 (MQ=60)
AATCGTAGGGCAGATAAGGCGTT‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTC > SRR4302536.1692444/1‑94 (MQ=60)
AATCGTAGGGAAGATAAGGCGTT‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTC < SRR4302536.84223/94‑1 (MQ=60)
ATCGTAGGGCAGATAAGGCGTT‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCC > SRR4302536.3062520/1‑94 (MQ=60)
ATCGTAGGGCAGATAAGGCGTT‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCC > SRR4302536.1142036/1‑94 (MQ=60)
ATCGTAGGGCAGATAAGGCGTT‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCC < SRR4302536.6466602/94‑1 (MQ=60)
agGTAGGCCAGATACGGCGTT‑‑CACGCCGCATCTGGCAACGAACGCATTGCCTGACATAAAACTGCCGGAGAATATCTCCGGCATTTTTATTCCA < SRR4302536.3824541/92‑1 (MQ=60)
TCGTAGGCCAGATAAGGCGTT‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCA < SRR4302536.2011405/94‑1 (MQ=60)
CGTAGGGCAGATAAGGCGTT‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCAC > SRR4302536.4312511/1‑94 (MQ=60)
CGTAGGGCAGATAAGGCGTT‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCAC < SRR4302536.6647475/94‑1 (MQ=60)
GTAGGGAAGATAAGGCGTT‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACA < SRR4302536.247100/94‑1 (MQ=60)
TAGGTCAGATAAGACGTA‑‑CACGCCGCATCTGGCAACGAACGCCTTCCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAG < SRR4302536.1731630/94‑1 (MQ=60)
TAGGGCAGATAAGGCGTT‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTTTTTCACAG > SRR4302536.3614661/1‑94 (MQ=60)
TAGGGCAGATAAGGCGTT‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAG < SRR4302536.3751961/94‑1 (MQ=60)
AGGGCAGATAAGGCGTT‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGC > SRR4302536.5586388/1‑94 (MQ=60)
AGGGCAGATAAGGCGTT‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTACGGCATTTTTATTCCACAGC > SRR4302536.2761565/1‑94 (MQ=60)
GGGCAGATAAGGCGTT‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCC < SRR4302536.2146444/94‑1 (MQ=60)
AGATAAGGCGTT‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAAC < SRR4302536.1893681/94‑1 (MQ=60)
AGATAAGGCGTT‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAAC > SRR4302536.2674350/1‑94 (MQ=60)
AGATAAGGCGTT‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAAC < SRR4302536.5897946/94‑1 (MQ=60)
GATAAGGCGTT‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTTCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACT > SRR4302536.6836552/1‑94 (MQ=60)
GATAAGGCGTT‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACT < SRR4302536.6657453/94‑1 (MQ=60)
ATAAGGCGTT‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGCATATCTCCGGCATTTTTATTCCACAGCCAAACTC > SRR4302536.5756164/1‑94 (MQ=60)
ATAAGGCGTT‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTC > SRR4302536.3920045/1‑94 (MQ=60)
TAAGGCGTT‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCA < SRR4302536.6298720/94‑1 (MQ=60)
AAGGCGTT‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCCGCATTTTTTTTCCACACCCCAACTCAT > SRR4302536.1266170/1‑94 (MQ=60)
GCGTT‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGGGGATATCTCCGGGATTTTTATTTCACAGCCAAACTCATAAA > SRR4302536.2519409/1‑94 (MQ=60)
GCGTT‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAACCTCATAAT < SRR4302536.6555177/94‑1 (MQ=60)
GCGTT‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAAT < SRR4302536.3334891/94‑1 (MQ=60)
CGTT‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAATA > SRR4302536.6377622/1‑94 (MQ=60)
GTT‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCTGAGGATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAATAT > SRR4302536.3977994/1‑94 (MQ=60)
GTT‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAATAT > SRR4302536.2022318/1‑94 (MQ=60)
GTT‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAATAT < SRR4302536.1451653/94‑1 (MQ=60)
GTT‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAATAT < SRR4302536.6403569/94‑1 (MQ=60)
TT‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAATATA < SRR4302536.3181999/94‑1 (MQ=60)
TT‑‑CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAATATA > SRR4302536.4483980/1‑94 (MQ=60)
cacgCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAATATATT > SRR4302536.4451588/5‑94 (MQ=60)
CG‑‑CCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAATATATTCC < SRR4302536.1758470/94‑1 (MQ=60)
CG‑‑CCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAATATATTCC < SRR4302536.4912623/94‑1 (MQ=60)
acgCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAATATATTC > SRR4302536.1013959/4‑94 (MQ=60)
acgCCGCATCTGGCAACGAACGCCCTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAATATATTC > SRR4302536.1172842/4‑94 (MQ=60)
G‑‑CCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAATATATTCCG < SRR4302536.3230884/94‑1 (MQ=60)
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CGCTGGCGGCGGCAATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTT‑‑CA‑‑CCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAATATATTCCG > NC_000913/3537313‑3537497
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
