Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 1548 369.5 20095359 96.9% 19472402 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,115,116 +C coding (2013/2028 nt) b2974 ← putative endoglucanase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,115,1151.C99.4% 1138.9 / ‑2.3 348coding (2014/2028 nt)b2974putative endoglucanase
Reads supporting (aligned to +/- strand):  ref base . (2/0);  new base C (164/182);  total (166/182)
Fisher's exact test for biased strand distribution p-value = 2.27e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 374 total aligned reads displayed.

GTTTGCTGGTATCTGCACGCAGCGGGATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTT‑CTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGAAGTCGAACGCAGCGCTGTTTCCTGTAA  >  NC_000913/3115023‑3115207
                                                                                              |                                                                                            
gTTTGCTGGTATCTGCACGCAGCGGGATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑ttt                                                                                               >  1:6307535/1‑93 (MQ=255)
gTTTGCTGGTATCTGCACGCAGCGGGATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑ttt                                                                                               >  1:9685594/1‑93 (MQ=255)
  ttGCTGGTATCTGCACGCAGCGGGATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTT‑cc                                                                                            <  2:7026638/93‑2 (MQ=255)
  ttGCTGGTATCTGCACGCAGCGGGATTACATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTT‑cc                                                                                            <  1:3920590/93‑2 (MQ=255)
   tGCTGGTATCTGCACGCAGCGGGATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTT‑cct                                                                                           >  2:9115334/1‑91 (MQ=255)
   tGCTGGTATCTGCACGCAGCGGGATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTT‑cct                                                                                           <  1:1805762/93‑3 (MQ=255)
    gCTGGTATCTGCACGCTGCGGGAATGCATAAGGATCGTTACCCACCTGAGTCTCATATCCAAAGCCGTTAAGGTTCAGCAGCGGCA‑tct‑cctc                                                                                          >  1:7722565/1‑90 (MQ=255)
    gCTGGTATCTGCACGCAGCGGGATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTT‑cctg                                                                                          >  2:8607729/1‑90 (MQ=255)
     cTGGTATCTGCACGCAGCGGGATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTT‑cctgc                                                                                         <  1:1574975/93‑5 (MQ=255)
       ggTATCTGCACGCAGCGGGATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCgg                                                                                        >  1:4274738/1‑93 (MQ=255)
       ggTATCGGCACGCAGCGGGATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCgg                                                                                        <  1:6501741/93‑1 (MQ=255)
         tATCTGCACGCAGCGGGATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGac                                                                                      >  2:7668805/1‑92 (MQ=255)
         tATCTGCACGCAGCGGGATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGAt                                                                                      <  2:5044027/93‑1 (MQ=255)
           tCTGCACGCAGCGGGATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCGAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCg                                                                                    >  1:3533092/1‑93 (MQ=255)
           tCTGCACGCAGCGGGATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCg                                                                                    >  2:2919161/1‑93 (MQ=255)
            cTGCACGCAGCGGGATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCga                                                                                   >  1:8589945/1‑93 (MQ=255)
             tGCACGCAGCGGGATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCgag                                                                                  >  1:8341358/1‑93 (MQ=255)
              gCACGCAGCGGGATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCgaga                                                                                 >  1:7871406/1‑93 (MQ=255)
               cACGCAGCGGGATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGAt                                                                                >  2:1222530/1‑93 (MQ=255)
               cACGCAGCGGGATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGAt                                                                                <  2:2068667/93‑1 (MQ=255)
                aCGCAGCGGGATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATc                                                                               <  1:5317246/93‑1 (MQ=255)
                 cGCAGCGGGATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCg                                                                              >  2:9236040/1‑93 (MQ=255)
                  gCAGCGGGATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGc                                                                             <  2:2334984/93‑1 (MQ=255)
                  ccAGCGGGATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGc                                                                             <  2:7239792/92‑1 (MQ=255)
                    aGCGGGATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCa                                                                           >  2:7957056/1‑93 (MQ=255)
                    aGCGGGATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCa                                                                           <  2:3271286/93‑1 (MQ=255)
                     gCGGGATTGCATAAGGATCGTTACCCCCCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCAt                                                                          <  1:5220301/93‑1 (MQ=255)
                      cGGGATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATa                                                                         <  1:2219430/93‑1 (MQ=255)
                      cGGGATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATa                                                                         >  2:8166805/1‑93 (MQ=255)
                      cGGGATGTCATAAGGATCGGTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATa                                                                         <  1:7183688/93‑1 (MQ=255)
                       gggATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAg                                                                        <  2:8344845/93‑1 (MQ=255)
                       gggATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAg                                                                        <  1:1357289/93‑1 (MQ=255)
                        ggATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGc                                                                       >  2:2518868/1‑93 (MQ=255)
                        ggATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGc                                                                       <  1:9339406/93‑1 (MQ=255)
                         gATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCATCGGCATTTT‑CTGCGGATCGAGATCGCCATAGCt                                                                      >  1:8752902/1‑93 (MQ=255)
                         gATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCt                                                                      >  1:5854056/1‑93 (MQ=255)
                          aTTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTa                                                                     <  2:3059853/93‑1 (MQ=255)
                            tGCATAAGGATCGTTACCCTCCTGAGTCGCATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACt                                                                   <  1:3670489/93‑1 (MQ=255)
                            tGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACt                                                                   >  2:2675362/1‑93 (MQ=255)
                              cATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTa                                                                 <  1:3135223/93‑1 (MQ=255)
                               aTAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTaa                                                                <  2:9562498/93‑1 (MQ=255)
                               aTAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTaa                                                                >  2:4022530/1‑93 (MQ=255)
                                tAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTaaa                                                               >  1:1775562/1‑93 (MQ=255)
                                tAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTaaa                                                               >  1:3278113/1‑93 (MQ=255)
                                tAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTaaa                                                               <  2:4905342/93‑1 (MQ=255)
                                tAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTaaa                                                               <  1:4342094/93‑1 (MQ=255)
                                 aaGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAAt                                                              <  1:1922473/93‑1 (MQ=255)
                                   ggATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGc                                                            <  2:7634722/93‑1 (MQ=255)
                                    gATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCt                                                           >  2:6561542/1‑93 (MQ=255)
                                     aTCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTc                                                          <  1:3362459/93‑1 (MQ=255)
                                      tCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCa                                                         >  2:4482632/1‑93 (MQ=255)
                                       cGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCaa                                                        <  2:714566/93‑1 (MQ=255)
                                        gTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAAc                                                       <  2:1181188/93‑1 (MQ=255)
                                         ttACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACa                                                      <  2:9739184/93‑1 (MQ=255)
                                         ttACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACa                                                      >  2:6495002/1‑93 (MQ=255)
                                          tACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACag                                                     >  1:2440717/1‑93 (MQ=255)
                                          tACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACag                                                     <  2:863315/93‑1 (MQ=255)
                                           aCCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACaga                                                    >  2:8915597/1‑93 (MQ=255)
                                            cccACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACagag                                                   >  2:4867600/1‑93 (MQ=255)
                                             cccccTGAGTCACAAATTCCAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAgaga                                                  <  2:4341341/90‑1 (MQ=255)
                                             ccACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAgaga                                                  <  1:5068693/93‑1 (MQ=255)
                                             ccACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAgaga                                                  <  2:5975040/93‑1 (MQ=255)
                                             ccACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAgaga                                                  <  2:5357578/93‑1 (MQ=255)
                                             ccACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAgaga                                                  >  1:8884859/1‑93 (MQ=255)
                                               cccTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATg                                                <  1:1012788/92‑1 (MQ=255)
                                                 cTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGcc                                              <  2:8096207/93‑1 (MQ=255)
                                                    aGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGc                                           >  1:7633745/1‑93 (MQ=255)
                                                    aGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGc                                           >  1:2566864/1‑93 (MQ=255)
                                                    aGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGc                                           >  1:9917142/1‑93 (MQ=255)
                                                     gTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCa                                          >  2:1494217/1‑93 (MQ=255)
                                                         caTATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAAt                                      >  2:3380334/1‑93 (MQ=255)
                                                          atatTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATc                                     >  2:6983288/1‑93 (MQ=255)
                                                           tatTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATcc                                    >  1:1980553/1‑93 (MQ=255)
                                                           tatTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATcc                                    <  1:3751004/93‑1 (MQ=255)
                                                            atTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAgaga                                                  <  2:3982189/78‑1 (MQ=255)
                                                             ttCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCgg                                  <  2:1580831/93‑1 (MQ=255)
                                                              tCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGa                                 <  2:5704548/93‑1 (MQ=255)
                                                              tCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGa                                 <  2:4297223/93‑1 (MQ=255)
                                                              tCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGa                                 <  1:8537097/93‑1 (MQ=255)
                                                              tCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGa                                 <  2:6647461/93‑1 (MQ=255)
                                                                aaaGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATg                               >  1:4085242/1‑93 (MQ=255)
                                                                  aGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGa                             <  2:1705462/93‑1 (MQ=255)
                                                                  aGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGa                             <  2:1034668/93‑1 (MQ=255)
                                                                      gTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGAAGTc                         <  1:5563206/93‑1 (MQ=255)
                                                                       ttAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGAAGTCg                        >  1:4607158/1‑93 (MQ=255)
                                                                         aaGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGAAGTCGac                      >  1:4023088/1‑92 (MQ=255)
                                                                         aaGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGAAGTCGaa                      <  2:461625/93‑1 (MQ=255)
                                                                         aaGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGAAGTCGaa                      <  1:9624538/93‑1 (MQ=255)
                                                                            gATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGAAGTCGAACGc                   <  1:5655790/93‑1 (MQ=255)
                                                                              tCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGAAGTCGAACGCAg                 >  1:2996746/1‑93 (MQ=255)
                                                                              tCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGAAGTCGAACGCAg                 <  1:2748697/93‑1 (MQ=255)
                                                                              tCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGAAGTCGAACGCAg                 <  1:6051614/93‑1 (MQ=255)
                                                                               cagcagCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGAAGTCGAACGCAgc                >  2:9436612/1‑93 (MQ=255)
                                                                                agcagcGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGAAGTCGAACGCAgag               >  1:6564223/1‑91 (MQ=255)
                                                                                 gcagcGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCACAATCCGGATGGAAGTCGAACGCAgcgc              >  1:4888003/1‑93 (MQ=255)
                                                                                 gcagcGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGAAGTCGAACGCAgcgc              >  1:4646604/1‑93 (MQ=255)
                                                                                  cagcGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGAAGTCGAACGCAGCGCt             <  2:610614/93‑1 (MQ=255)
                                                                                       gCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGAAGTCGAACGCAGCGCTGTTTc        >  2:2792935/1‑93 (MQ=255)
                                                                                       gCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGAAGTCGAACGCAGCGCTGTTTc        >  2:3799182/1‑93 (MQ=255)
                                                                                             t‑CTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGAAGTCGAACGCAGCGCTGTTTCCTGTaa  <  1:6902330/93‑1 (MQ=255)
                                                                                              |                                                                                            
GTTTGCTGGTATCTGCACGCAGCGGGATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTT‑CTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGAAGTCGAACGCAGCGCTGTTTCCTGTAA  >  NC_000913/3115023‑3115207

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
GTTTGCTGGTATCTGCACGCAGCGGGATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTT‑CTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGAAGTCGAACGCAGCGCTGTTTCCTGTAACC  >  NC_000913/3115023‑3115209
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GTTTGCTGGTATCTGCACGCAGCGGGATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTT‑C                                                                                               >  SRR4302540.5889013/1‑94 (MQ=60)
GTTTGCTGGTATCTGCACGCAGCGGGATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTT‑C                                                                                               >  SRR4302540.7229756/1‑94 (MQ=60)
GTTTGCTGGTATCTGCACGCAGCGGGATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTT‑C                                                                                               <  SRR4302540.3379544/94‑1 (MQ=60)
  TTGCTGGTATCTGCACGCGGCGGGATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTT‑Cct                                                                                             >  SRR4302540.3935487/1‑92 (MQ=60)
  TTGCTGGTATCTGCACGCAGCGGGATTACATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTT‑Cct                                                                                             <  SRR4302540.3963024/94‑3 (MQ=60)
   TGCTGGTATCTGCACGCAGCGGGATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTT‑Cctg                                                                                            <  SRR4302540.1825432/94‑4 (MQ=60)
     CTGGTATCTGCACGCAGCGGGATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCG                                                                                           <  SRR4302540.2076825/94‑1 (MQ=60)
     CTGGTATCTGCACGCAGCGGGATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCG                                                                                           <  SRR4302540.1592213/94‑1 (MQ=60)
     CTGGTATCTGCACGCAGCGGGATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCG                                                                                           >  SRR4302540.2009428/1‑94 (MQ=60)
      TGGTATCTGCACGCAGCGGGATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGG                                                                                          >  SRR4302540.4321231/1‑94 (MQ=60)
      TGGTATCTGCACGCAGCGGGATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGG                                                                                          >  SRR4302540.2561918/1‑94 (MQ=60)
      TGGTATCTGCACGCAGCGGGATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGG                                                                                          >  SRR4302540.6581947/1‑94 (MQ=60)
       GGTATCGGCACGCAGCGGGATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGA                                                                                         <  SRR4302540.6574014/94‑1 (MQ=60)
        GTATCTGCACGCAGCGGGATTGCATAAGGATCGTTCCCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGAT                                                                                        <  SRR4302540.9743301/94‑1 (MQ=60)
        GTATCTGCACGCAGCGGGATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGAT                                                                                        <  SRR4302540.9743302/94‑1 (MQ=60)
        GTATCTGCACGCAGCGGGATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGAT                                                                                        >  SRR4302540.1970926/1‑94 (MQ=60)
         TATCTGCACGCAGCGGGATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATC                                                                                       <  SRR4302540.5303624/94‑1 (MQ=60)
         TATCTGCACGCAGCGGGATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATC                                                                                       >  SRR4302540.4323171/1‑94 (MQ=60)
         TATCTGCACGCAGCGGGATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATC                                                                                       <  SRR4302540.5696885/94‑1 (MQ=60)
         TATCTGCACGCAGCGGGATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATC                                                                                       <  SRR4302540.9969743/94‑1 (MQ=60)
          ATCTGCACGCAGCGGGATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCGAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCG                                                                                      >  SRR4302540.3571660/1‑94 (MQ=60)
          ATCTGCACGCAGCGGGATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCG                                                                                      <  SRR4302540.6881498/94‑1 (MQ=60)
          ATCTGCACGCAGCGGGATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCG                                                                                      >  SRR4302540.2725345/1‑94 (MQ=60)
           TCTGCACGCAGCGGGATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGA                                                                                     >  SRR4302540.8689804/1‑94 (MQ=60)
            CTGCACGCAGCGGGATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAG                                                                                    >  SRR4302540.8438174/1‑94 (MQ=60)
             TGCACGCAGCGGGATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGA                                                                                   >  SRR4302540.7963354/1‑94 (MQ=60)
             TGCACGCAGCGGGATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGA                                                                                   >  SRR4302540.9358300/1‑94 (MQ=60)
               CACGCAGCGGGATTGCATAAGGATCGTTACTCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATC                                                                                 <  SRR4302540.5896156/94‑1 (MQ=60)
               CACGCAGCGGGATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATC                                                                                 >  SRR4302540.152431/1‑94 (MQ=60)
               CACGCAGCGGGATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATC                                                                                 <  SRR4302540.3493736/94‑1 (MQ=60)
                ACGCAGCGGGGTTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCG                                                                                <  SRR4302540.3058300/94‑1 (MQ=60)
                ACGCAGCGGGATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCG                                                                                <  SRR4302540.5375466/94‑1 (MQ=60)
                ACGCAGCGGGATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCG                                                                                <  SRR4302540.4219851/94‑1 (MQ=60)
                 CGCAGCGGGATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGC                                                                               >  SRR4302540.1794937/1‑94 (MQ=60)
                  GCAGCGGGATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCC                                                                              <  SRR4302540.5963569/94‑1 (MQ=60)
                    AGCGGGATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCAT                                                                            <  SRR4302540.8643641/94‑1 (MQ=60)
                    AGCGGGATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCAT                                                                            <  SRR4302540.8424073/94‑1 (MQ=60)
                     GCGGGATTGCATAAGGATCGTTACCCCCCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATA                                                                           <  SRR4302540.5277211/94‑1 (MQ=60)
                      CGGGATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAG                                                                          <  SRR4302540.2243364/94‑1 (MQ=60)
                      CGGGATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAG                                                                          >  SRR4302540.4231385/1‑94 (MQ=60)
                      CGGGATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAG                                                                          <  SRR4302540.2034108/94‑1 (MQ=60)
                      CGGGATGTCATAAGGATCGGTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAG                                                                          <  SRR4302540.7263773/94‑1 (MQ=60)
                       GGGATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGC                                                                         >  SRR4302540.8730310/1‑94 (MQ=60)
                       GGGATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGC                                                                         <  SRR4302540.1371603/94‑1 (MQ=60)
                       GGGATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGC                                                                         <  SRR4302540.4969570/94‑1 (MQ=60)
                       GGGATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGC                                                                         >  SRR4302540.2725588/1‑94 (MQ=60)
                        GGATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCATCGGCATTTT‑CTGCGGATCGAGATCGCCATAGCT                                                                        >  SRR4302540.8854447/1‑94 (MQ=60)
                        GGATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCT                                                                        >  SRR4302540.8854446/1‑94 (MQ=60)
                        GGATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCT                                                                        <  SRR4302540.9450714/94‑1 (MQ=60)
                        GGATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCT                                                                        >  SRR4302540.5918799/1‑94 (MQ=60)
                         GATTGCATAAGGATCGTTACCCCCCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTA                                                                       <  SRR4302540.29992/94‑1 (MQ=60)
                         GATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTC                                                                       >  SRR4302540.7822379/1‑94 (MQ=60)
                          ATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTAC                                                                      >  SRR4302540.7091173/1‑94 (MQ=60)
                          ATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCCGCGGATCGAGATCGCCATAGCTAC                                                                      <  SRR4302540.1443675/94‑1 (MQ=60)
                            TGCATAAGGATCGTTACCCTCCTGAGTCGCATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTT                                                                    <  SRR4302540.3710641/94‑1 (MQ=60)
                            TGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTT                                                                    >  SRR4302540.141070/1‑94 (MQ=60)
                             GCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGTATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCAATGGCTACTTA                                                                   >  SRR4302540.8619992/1‑94 (MQ=60)
                             GCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTA                                                                   <  SRR4302540.6995699/94‑1 (MQ=60)
                             GCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTA                                                                   >  SRR4302540.178373/1‑94 (MQ=60)
                              CATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAA                                                                  <  SRR4302540.3169422/94‑1 (MQ=60)
                              CATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAA                                                                  >  SRR4302540.8837656/1‑94 (MQ=60)
                              CATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAA                                                                  >  SRR4302540.5496726/1‑94 (MQ=60)
                              CATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAA                                                                  >  SRR4302540.195242/1‑94 (MQ=60)
                               ATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAA                                                                 <  SRR4302540.404498/94‑1 (MQ=60)
                               ATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAA                                                                 >  SRR4302540.9653328/1‑94 (MQ=60)
                               ATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAA                                                                 >  SRR4302540.1794840/1‑94 (MQ=60)
                               ATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAA                                                                 >  SRR4302540.3313914/1‑94 (MQ=60)
                               ATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAA                                                                 >  SRR4302540.3266417/1‑94 (MQ=60)
                                TAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAAT                                                                >  SRR4302540.6338021/1‑94 (MQ=60)
                                TAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAAT                                                                <  SRR4302540.318757/94‑1 (MQ=60)
                                TAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAAT                                                                <  SRR4302540.4389360/94‑1 (MQ=60)
                                 AAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATG                                                               <  SRR4302540.1943434/94‑1 (MQ=60)
                                  AGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGC                                                              <  SRR4302540.5959264/94‑1 (MQ=60)
                                   GGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCT                                                             >  SRR4302540.1859768/1‑94 (MQ=60)
                                   GGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCC                                                             >  SRR4302540.670115/1‑94 (MQ=60)
                                     ATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCA                                                           <  SRR4302540.3399260/94‑1 (MQ=60)
                                      TCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAA                                                          <  SRR4302540.8257131/94‑1 (MQ=60)
                                      TCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAA                                                          <  SRR4302540.3038767/94‑1 (MQ=60)
                                        GTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACA                                                        <  SRR4302540.9356098/94‑1 (MQ=60)
                                        GTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACA                                                        <  SRR4302540.4352238/94‑1 (MQ=60)
                                         TTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAG                                                       >  SRR4302540.2466999/1‑94 (MQ=60)
                                         TTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAG                                                       <  SRR4302540.8268391/94‑1 (MQ=60)
                                         TTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAG                                                       >  SRR4302540.2466998/1‑94 (MQ=60)
                                          TACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGA                                                      >  SRR4302540.6420028/1‑94 (MQ=60)
                                          TACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGA                                                      >  SRR4302540.10043994/1‑94 (MQ=60)
                                           ACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAG                                                     <  SRR4302540.6523217/94‑1 (MQ=60)
                                           ACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAG                                                     <  SRR4302540.7585817/94‑1 (MQ=60)
                                            CCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGA                                                    >  SRR4302540.8987700/1‑94 (MQ=60)
                                            CCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGA                                                    >  SRR4302540.2852604/1‑94 (MQ=60)
                                            CCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGA                                                    <  SRR4302540.8624529/94‑1 (MQ=60)
                                             CCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGAT                                                   <  SRR4302540.7829219/94‑1 (MQ=60)
                                             CCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGAT                                                   <  SRR4302540.5123496/94‑1 (MQ=60)
                                             CCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGAT                                                   <  SRR4302540.7829221/94‑1 (MQ=60)
                                             CCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGAT                                                   <  SRR4302540.1231640/94‑1 (MQ=60)
                                             CCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGAT                                                   <  SRR4302540.2787399/94‑1 (MQ=60)
                                             CCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGAT                                                   >  SRR4302540.3205262/1‑94 (MQ=60)
                                             CCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGAT                                                   <  SRR4302540.5279145/94‑1 (MQ=60)
                                             CCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGAT                                                   <  SRR4302540.4096658/94‑1 (MQ=60)
                                             CCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGAT                                                   >  SRR4302540.9718941/1‑94 (MQ=60)
                                              CACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATG                                                  >  SRR4302540.8566170/1‑94 (MQ=60)
                                               CCCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGC                                                 <  SRR4302540.1023053/94‑1 (MQ=60)
                                                CCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCC                                                <  SRR4302540.8973411/94‑1 (MQ=60)
                                                CCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCC                                                <  SRR4302540.3509429/94‑1 (MQ=60)
                                                 CTGAGTCACATATTCCAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTGAATGCTCAACAGAGATGCCC                                               <  SRR4302540.9058145/94‑1 (MQ=60)
                                                 CTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCC                                               >  SRR4302540.2257008/1‑94 (MQ=60)
                                                 CTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCC                                               <  SRR4302540.7742774/94‑1 (MQ=60)
                                                 CTGAGTCACATATGCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCC                                               <  SRR4302540.7742773/94‑1 (MQ=60)
                                                  TGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCTTAGCTACTTAAATGCTCAACAGAGATGCCCG                                              >  SRR4302540.2420145/1‑94 (MQ=60)
                                                  CGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCG                                              <  SRR4302540.2582888/94‑1 (MQ=60)
                                                   GAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGC                                             >  SRR4302540.7719627/1‑94 (MQ=60)
                                                   GAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGC                                             >  SRR4302540.10032960/1‑94 (MQ=60)
                                                   GAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGC                                             >  SRR4302540.2594536/1‑94 (MQ=60)
                                                    AGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCA                                            >  SRR4302540.4306388/1‑94 (MQ=60)
                                                     GTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAA                                           >  SRR4302540.5290697/1‑94 (MQ=60)
                                                      TCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAA                                          <  SRR4302540.1767262/94‑1 (MQ=60)
                                                       CACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAA                                         >  SRR4302540.4111825/1‑94 (MQ=60)
                                                          ATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCC                                      >  SRR4302540.3652264/1‑94 (MQ=60)
                                                          ATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCC                                      >  SRR4302540.4934970/1‑94 (MQ=60)
                                                          ATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCC                                      <  SRR4302540.1991209/94‑1 (MQ=60)
                                                          ATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCC                                      >  SRR4302540.2002037/1‑94 (MQ=60)
                                                           TATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATaagcgctagatcgg                                     >  SRR4302540.4025078/1‑80 (MQ=60)
                                                           TATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCG                                     >  SRR4302540.5181458/1‑94 (MQ=60)
                                                           TATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCG                                     >  SRR4302540.4493982/1‑94 (MQ=60)
                                                           TATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCG                                     <  SRR4302540.3791927/94‑1 (MQ=60)
                                                           TATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCG                                     <  SRR4302540.3791926/94‑1 (MQ=60)
                                                             TTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGA                                   >  SRR4302540.8855131/1‑94 (MQ=60)
                                                             TTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGA                                   >  SRR4302540.1900341/1‑94 (MQ=60)
                                                             TTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTACTGCGGATCAAGATCGCCATAGCTACTTAAATGATCAACAGAGATGCCCGCAAAATCCGGA                                   >  SRR4302540.1900340/1‑94 (MQ=60)
                                                              TCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGAT                                  <  SRR4302540.8636298/94‑1 (MQ=60)
                                                               CAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATG                                 >  SRR4302540.4732156/1‑94 (MQ=60)
                                                               CAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATG                                 >  SRR4302540.4129298/1‑94 (MQ=60)
                                                                 AAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGA                               <  SRR4302540.1898155/94‑1 (MQ=60)
                                                                  AGCCGTTAAGGATCAGCAGTGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGAA                              <  SRR4302540.4359547/94‑1 (MQ=60)
                                                                  AGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGAG                              >  SRR4302540.3683860/1‑94 (MQ=60)
                                                                  AGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGAA                              <  SRR4302540.5039427/94‑1 (MQ=60)
                                                                   GCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGAAG                             <  SRR4302540.8688291/94‑1 (MQ=60)
                                                                     CGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGAAGTC                           <  SRR4302540.9976712/94‑1 (MQ=60)
                                                                     CGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGAAGTC                           >  SRR4302540.6480010/1‑94 (MQ=60)
                                                                     CGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGAAGTC                           <  SRR4302540.4680426/94‑1 (MQ=60)
                                                                      GTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGAAGTCG                          >  SRR4302540.3463796/1‑94 (MQ=60)
                                                                      GTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGAAGTCG                          >  SRR4302540.4656637/1‑94 (MQ=60)
                                                                      GTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGAAGTCG                          >  SRR4302540.4656638/1‑94 (MQ=60)
                                                                      GTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGAAGTCG                          <  SRR4302540.5624466/94‑1 (MQ=60)
                                                                       TTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGAAGTCGA                         >  SRR4302540.5469271/1‑94 (MQ=60)
                                                                        TAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGAAGTCGAC                        >  SRR4302540.4066450/1‑94 (MQ=60)
                                                                        TAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGAAGTCGAA                        >  SRR4302540.5958554/1‑94 (MQ=60)
                                                                         AAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGAAGTCGAAC                       <  SRR4302540.1047834/94‑1 (MQ=60)
                                                                         AAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGAAGTCGAAC                       <  SRR4302540.9737972/94‑1 (MQ=60)
                                                                            GATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGAAGTCGAACGCA                    <  SRR4302540.5718064/94‑1 (MQ=60)
                                                                            GATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGAAGTCGAACGCA                    <  SRR4302540.7685043/94‑1 (MQ=60)
                                                                             ATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCCTAGCTACTTAAATGCTCAACAGAGATGCCCGCCAAATCCGGATGGAAGTCGAACGCAG                   >  SRR4302540.3935340/1‑94 (MQ=60)
                                                                             ATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGAAGTCGAACGCAG                   >  SRR4302540.3029773/1‑94 (MQ=60)
                                                                             ATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGAAGTCGAACGCAG                   >  SRR4302540.614134/1‑94 (MQ=60)
                                                                             ATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGAAGTCGAACGCAG                   >  SRR4302540.3884130/1‑94 (MQ=60)
                                                                             ATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGAAGTCGAACGCAG                   >  SRR4302540.4697855/1‑94 (MQ=60)
                                                                             ATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGAAGTCGAACGCAG                   >  SRR4302540.2124695/1‑94 (MQ=60)
                                                                              TCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGAAGTCGAACGCAGC                  <  SRR4302540.2778394/94‑1 (MQ=60)
                                                                              TCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGAAGTCGAACGCAGC                  <  SRR4302540.6912446/94‑1 (MQ=60)
                                                                              TCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGAAGTCGAACGCAGC                  <  SRR4302540.51955/94‑1 (MQ=60)
                                                                              TCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGAAGTCGAACGCAGC                  <  SRR4302540.3380535/94‑1 (MQ=60)
                                                                              TCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGAAGTCGAACGCAGC                  <  SRR4302540.5697593/94‑1 (MQ=60)
                                                                              TCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGAAGTCGAACGCAGC                  <  SRR4302540.6118866/94‑1 (MQ=60)
                                                                              TCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGAAGTCGAACGCAGC                  >  SRR4302540.4501321/1‑94 (MQ=60)
                                                                              TCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGAAGTCGAACGCAGC                  <  SRR4302540.5697594/94‑1 (MQ=60)
                                                                              TCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGAAGTCGAACGCAGC                  <  SRR4302540.9862471/94‑1 (MQ=60)
                                                                               CAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGAAGTCGAACGCAGCG                 >  SRR4302540.3736069/1‑94 (MQ=60)
                                                                               CAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGAAGTCGAACGCAGCG                 >  SRR4302540.6636972/1‑94 (MQ=60)
                                                                               CAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGAAGTCGAACGCAGAG                 >  SRR4302540.6636973/1‑94 (MQ=60)
                                                                                AGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCACAATCCGGATGGAAGTCGAACGCAGCGC                >  SRR4302540.4940528/1‑94 (MQ=60)
                                                                                AGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGAAGTCGAACGCAGCGC                >  SRR4302540.6232946/1‑94 (MQ=60)
                                                                                AGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGAAGTCGAACGCAGCGC                >  SRR4302540.4696340/1‑94 (MQ=60)
                                                                                 GCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGAAGTCGAACGCAGCGCT               <  SRR4302540.8969781/94‑1 (MQ=60)
                                                                                  CAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGAAGTCGAACGCAGCGCTG              >  SRR4302540.4413607/1‑94 (MQ=60)
                                                                                   AGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGAAGTCGAACGCAGCGCTGT             <  SRR4302540.1804791/94‑1 (MQ=60)
                                                                                   AGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGAAGTCGAACGCAGCGCTGT             >  SRR4302540.7596521/1‑94 (MQ=60)
                                                                                   AGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGAAGTCGAACGCAGCGCTGT             >  SRR4302540.2720787/1‑94 (MQ=60)
                                                                                   AGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGAAGTCGAACGCAGCGCTGT             <  SRR4302540.5576493/94‑1 (MQ=60)
                                                                                    GCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGAAGTCGAACGCAGCGCTGTT            >  SRR4302540.3731034/1‑94 (MQ=60)
                                                                                    GCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGAAGTCGAACGCAGCGCTGTT            <  SRR4302540.9741332/94‑1 (MQ=60)
                                                                                       GCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGAAGTCGAACGCAGCGCTGTTTCC         <  SRR4302540.3372814/94‑1 (MQ=60)
                                                                                        CA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGAAGTCGAACGCAGCGCTGTTTCCT        <  SRR4302540.4999270/94‑1 (MQ=60)
                                                                                        CA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGAAGTCGAACGCAGCGCTGTTTCCT        <  SRR4302540.169538/94‑1 (MQ=60)
                                                                                         A‑TTTCCTGCGGATCGAGATCGCCGTAGCTACTTAAATGGCCAACAGAGATGCCCGCAAAATCCGGATGGAAGTCGAACACAGCGCTGTTTCCTT       >  SRR4302540.1830005/1‑94 (MQ=60)
                                                                                         A‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGAAGTCGAACGCAGCGCTGTTTCCTG       <  SRR4302540.3697950/94‑1 (MQ=60)
                                                                                         A‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGAAGTCGAACGCAGCGCTGTTTCCTG       >  SRR4302540.3712936/1‑94 (MQ=60)
                                                                                         A‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGAAGTCGAACGCAGCGCTGTTTCCTG       <  SRR4302540.6808673/94‑1 (MQ=60)
                                                                                         A‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGAAGTCGAACGCAGCGCTGTTTCCTG       >  SRR4302540.6050622/1‑94 (MQ=60)
                                                                                           TTTCCTGCGTATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGAAGTCGAACGCAGCGCTGTTTCCTGT      <  SRR4302540.9384281/94‑1 (MQ=60)
                                                                                           TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCGAAATCCGGATGGAAGTCGAACGCAGCGCTGTTTCCTGT      >  SRR4302540.2088723/1‑94 (MQ=60)
                                                                                           TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGAAGTCGAACGCAGCGCTGTTTCCTGT      >  SRR4302540.4188077/1‑94 (MQ=60)
                                                                                           TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGAAGTCGAACGCAGCGCTGTTTCCTGT      >  SRR4302540.8155404/1‑94 (MQ=60)
                                                                                           TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGAAGTCGAACGCAGCGCTGTTTCCTGT      >  SRR4302540.5809329/1‑94 (MQ=60)
                                                                                             T‑CTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGAAGTCGAACGCAGCGCTGTTTCCTGTAAC   <  SRR4302540.6979054/94‑1 (MQ=60)
                                                                                             C‑CTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGAAGTCGAACGCAGCGCTGTTTCCTGTAAC   <  SRR4302540.3721952/94‑1 (MQ=60)
                                                                                               CTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGAAGTCGAACGCAGCGCTGTTTCCTGTAACC  <  SRR4302540.9224899/94‑1 (MQ=60)
                                                                                               CTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGAAGTCGAACGCAGCGCTGTTTCCTGTAACC  <  SRR4302540.6754549/94‑1 (MQ=60)
                                                                                               |                                                                                             
GTTTGCTGGTATCTGCACGCAGCGGGATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTT‑CTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGAAGTCGAACGCAGCGCTGTTTCCTGTAACC  >  NC_000913/3115023‑3115209

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑