Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F224 I0 R1 1457 284.0 9290224 95.7% 8890744 150.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP009273 385,485 C→T 54.0% intergenic (‑302/‑222) hemB ← / → yaiT 5‑aminolevulinate dehydratase (porphobilinogen synthase)/pseudogene, autotransporter family;putative structure; Not classified; interrupted by IS3; putative flagellin structural protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP009273385,4850CT54.0% 37.7 / inf 224intergenic (‑302/‑222)hemB/yaiT5‑aminolevulinate dehydratase (porphobilinogen synthase)/pseudogene, autotransporter family;putative structure; Not classified; interrupted by IS3; putative flagellin structural protein
Reads supporting (aligned to +/- strand):  ref base C (47/56);  new base T (60/61);  total (107/117)
Fisher's exact test for biased strand distribution p-value = 5.93e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 229 total aligned reads displayed.

GAAAATATTTTTAATCTTTATTTATAGCTGTTGGTTATTATTTTTTGGAGTTTGGTTGCGCTGCTATAAATTGAATAATTAAAACTTTGTTGCATATTCATAGGATATTTATCTGGTTTGTGTTTGTGATATTTATTATGCGTATGCTTCAAAAACAAAATTATCTGCAACATGTTGAAATACTGTGCTTTTATGAATTTGATGCGTGTTTTTCTCCATAAATTATATATGTCCACATTCGGACTTAGGGGAAAGAATAATTGAACCATTCGTCTGTAACGCAGCATAATCGTTAGCG  >  CP009273/385336‑385633
                                                                                                                                                     |                                                                                                                                                    
gAATATATTTTTAATCTTTATTTATAGCTGTTGGTTATTATTTTTTGGAGTTTGGTTGCGCTGCTATAAATTGAATAATTAAAACTTTGTTGCATATTCATAGGATATTTATCTGGTTTGTGTTTGTGATATTTATTATGCGTATGCTTc                                                                                                                                                      <  2:4442057/150‑1 (MQ=255)
gAAAATATTTTTAATCTTTATTTATAGCTGTTGGTTATTATTTTTTGGAGTTTGGTTGCGCTGCTATAAATTGAATAATTAAAACTTTGTTGCATATTCATAGGATATTTATCTGGTTTGTGTTTGTGATATTTATTATGCGTATGCTTc                                                                                                                                                      <  1:1221044/150‑1 (MQ=255)
 aaaaTATTTTTAATCTTTATTTATAGCTGTTGGTTATTATTTTTTGGAGTTTGGTTGCGCTGCTATAAATTGAATAATTAAAACTTTGTTGCATATTCATAGGATATTTATCTGGTTTGTGTTTGTGATATTTATTATGCGTATGCTTCa                                                                                                                                                     <  2:3599332/150‑1 (MQ=255)
          ttAATCTTTATTTATAGCTGTTGGTTATTATTTTTTGGAGTTTGGTTGCGCTGCTATAAATTGAATAATTAAAACTTTGTTGCATATTCATAGGATATTTATCTGGTTTGTTTTTGTGATATTTATTATGCGTATGCTTTAAAAACaaaa                                                                                                                                            <  1:4160814/150‑1 (MQ=255)
           tAATCTTTATTTATAGCTGTTGGTTATTATTTTTTGGAGTTTGGTTGCGCTGCTATAAATTGAATAATTAAAACTTTGTTGCATATTCATAGGATATTTATCTGGTTTGTTTTTGTGATATTTATTATGCGTATGCTTTAAAAACAAAAt                                                                                                                                           <  2:4020545/150‑1 (MQ=255)
                 ttatttatAGCTGTTGGTTATTATTTTTTGGAGTTTGGTTGCGCTGCTATAAATTGAATAATTAAAACTTTGTTGCATATTCATAGGATATTTATCTGGTTTGTTTTTGTGATATTTATTATGCGTATGCTTTAAAAACAAAATTATCTg                                                                                                                                     <  1:3635497/150‑1 (MQ=255)
                  tatttatAGCTGTTGGTTATTATTTTTTGGAGTTTGGTTGCGCTGCTATAAATTGAATAATTAAAACTTTGTTGCATATTCATAGGATATTTATCTGGTTTGTTTTTGTGATATTTATTATGCGTATGCTTTAAAAACAAAATTATCTGc                                                                                                                                    <  2:2715698/150‑1 (MQ=255)
                   atttatAGCTGTTGGTTATTATTTTTTGGAGTTTGGTTGCGCTGCTATAAATTGAATAATTAAAACTTTGTTGCATATTCATAGGATATTTATCTGGTTTGTGTTTGTGATATTTATTATGCGTATGCTTCAAAAACAAAATTATCTGCa                                                                                                                                   <  2:1082521/150‑1 (MQ=255)
                    tttatAGCTGTTGGTTATTATTTTTTGGAGTTTGGTTGCGCTGCTATAAATTGAATAATTAAAACTTTGTTGCATATTCATAGGATATTTATCTGGTTTGTTTTTGTGATATTTATTATGCGTATGCTTTAAAAACAAAATTATCTGCaa                                                                                                                                  >  1:1534340/1‑150 (MQ=255)
                      tataGCTGTTGGTTATTATTTTTTGGAGTTTGGTTGCGCTGCTATAAATTGAATAATTAAAACTTTGTTGCATATTCATAGGATATTTATCTGGTTTGTTTTTGTGATATTTATTATGCGTATGCTTTAAAAACAAAATTATCTGCAACa                                                                                                                                <  2:2255527/150‑1 (MQ=255)
                       ataGCTGTTGGTTATTATTTTTTGGAGTTTGGTTGCGCTGCTATAAATTGAATAATTAAAACTTTGTTGCATATTCATAGGATATTTATCTGGTTTGTTTTTGTGATATTTATTATGCGTATGCTTTAAAAACAAAATTATCTGCAACAt                                                                                                                               <  2:3906834/150‑1 (MQ=255)
                       ataGCTGTTGGTTATTATTTTTTGGAGTTTGGTTGCGCTGCTATAAATTGAATAATTAAAACTTTGTTGCATATTCATAGGATATTTATCTGGTTTGTTTTTGTGATATTTATTATGCGTATGCTTTAAAAACAAAATTATCTGCAACAt                                                                                                                               >  1:3518257/1‑150 (MQ=255)
                       ataGCTGTTGGTTATTATTTTTTGGAGTTTGGTTGCGCTGCTATAAATTGAATAATTAAAACTTTGTTGCATATTCATAGGATATTTATCTGGTTTGTGTTTGTGATATTTATTATGCGTATGCTTCAAAAACAAAATTATCTGCAACAt                                                                                                                               >  1:663904/1‑150 (MQ=255)
                        taGCTGTTGGTTATTATTTTTTGGAGTTTGGTTGCGCTGCTATAAATTGAATAATTAAAACTTTGTTGCATATTCATAGGATATTTATCTGGTTTGTTTTTGTGATATTTATTATGCGTATGCTTTAAAAACAAAATTATCTGCAACATg                                                                                                                              >  2:3685684/1‑150 (MQ=255)
                        taGCTGTTGGTTATTATTTTTTGGAGTTTGGTTGCGCTGCTATAAATTGAATAATTAAAACTTTGTTGCATATTCATAGGATATTTATCTGGTTTGTGTTTGTGATATTTATTATGCGTATGCTTCAAAAACAAAATTATCTGCAACATg                                                                                                                              >  1:3703633/1‑150 (MQ=255)
                        taGCTGTTGGTTATTATTTTTTGGAGTTTGGTTGCGCTGCTATAAATTGAATAATTAAAACTTTGTTGCATATTCATAGGATATTTATCTGGTTTGTGTTTGTGATATTTATTATGCGTATGCTTCAAAAACAAAATTATCTGCAACATg                                                                                                                              <  2:733750/150‑1 (MQ=255)
                        taGCTGTTGGTTATTATTTTTTGGAGTTTGGTTGCGCTGCTATAAATTGAATAATTAAAACTTTGTTGCATATTCATAGGATATTTATCTGGTTTGTGTTTGTGATATTTATTATGCGTATGCTTCAAAAACAAAATTATCTGCAACATg                                                                                                                              <  2:3789168/150‑1 (MQ=255)
                        taGCTGTTGGTTATTATTTTTTGGAGTTTGGTTGCGCTGCTATAAATTGAATAATTAAAACTTTGTTGCATATTCATAGGATATTTATCTGGTTTGTGTTTGTGATATTTATTATGCGTATGCTTCAAAAACAAAATTATCTGCAACATg                                                                                                                              <  2:524235/150‑1 (MQ=255)
                               tGGTTATTATTTTTTGGAGTTTGGTTGCGCTGCTATAAATTGAATAATTAAAACTTTGTTGCATATTCATAGGATATTTATCTGGTTTGTTTTTGTGATATTTATTATGCGTATGCTTTAAAAACAAAATTATCTGCAACATGTTGAAAt                                                                                                                       >  2:2634719/1‑150 (MQ=255)
                               tGGTTATTATTTTTAGGAGATTGGATGCGCTGCTATAAATAGAATAATTAAAAATTTGTTGCATATTCATAGGATATTTAACTGGTTAGTTTTTGTGATAATTATAATGCGTATGCTTTAAAAACAAAATTATCTGCAACATGTTGAAAt                                                                                                                       >  2:1316226/1‑150 (MQ=255)
                                    attattTTTTGGAGTTTGGTTGCGCTGCTATAAATTGAATAATTAAAACTTTGTTGCATATTCATAGGATATTTATCTGGTTTGTTTTTGTGATATTTATTATGCGTATGCTTTAAAAACAAAATTATCTGCAACATGTTGAAATACtgt                                                                                                                  <  2:4494965/150‑1 (MQ=255)
                                     ttattTTTTGGAGTTTGGTTGCGCTGCTATAAATTGAATAATTAAAACTTTGTTGCATATTCATAGGATATTTATCTGGTTTGTTTTTGTGATATTTATTATGCGTATGCTTTAAAAACAAAATTATCTGCAACATGTTGAAATACtgtg                                                                                                                 <  2:742039/150‑1 (MQ=255)
                                       attTTTTGGAGTTTGGTTGCGCTGCTATAAATTGAATAATTAAAACTTTGTTGCATATTCATAGGATATTTATCTGGTTTGTGTTTGTGATATTTATTATGCGTATGCTTCAAAAACAAAATTATCTGCAACATGTTGAAATACTGTGCt                                                                                                               >  2:3257403/1‑150 (MQ=255)
                                         tttttGGAGTTTGGTTGCGCTGCTATAAATTGAATAATTAAAACTTTGTTGCATATTCATAGGATATTTATCTGGTTTGTTTTTGTGATATTTATTATGCGTATGCTTTAAAAACAAAATTATCTGCAACATGTTGAAATACTGTGCttt                                                                                                             >  1:2474394/1‑150 (MQ=255)
                                         tttttGGAGTTTGGTTGCGCTGCTATAAATTGAATAATTAAAACTTTGTTGCATATTCATAGGATATTTATCTGGTTTGTTTTTGTGATATTTATTATGCGTATGCTTTAAAAACAAAATTATCTGCAACATGTTGAAATACTGTGCttt                                                                                                             <  2:3118225/150‑1 (MQ=255)
                                          ttttGGAGTTTGGTTGCGCTGCTATAAATTGAATAATTAAAACTTTGTTGCATATTCATAGGATATTTATCTGGTTTGTGTTTGTGATATTTATTATGCGTATGCTTCAAAAACAAAATTATCTGCAACATGTTGAAATACTGTGCtttt                                                                                                            <  2:1859233/150‑1 (MQ=255)
                                            ttGGATTTTGGTTGCGCTGCTATAAATTGAATTATTAAAACTTTGTTGCATATTCATATGTTATTTATCTGGTTTGTTTTTGTGATATTTATTATGCGTATGCTTTAAAAACAAAATTATCTTCAACATGTTGATATACTGTGCTTTTAt                                                                                                          <  1:1650968/150‑1 (MQ=255)
                                            ttGGAGTTTGGTTGCGCTGCTATAAATTGAATAATTAAAACTTTGTTGCATATTCATAGGATATTTATCTGGTTTGTGTTTGTGATATTTATTATGCGTATGCTTCAAAAACAAAATTATCTGCAACATGTTGAAATACTGTGCTTTTAt                                                                                                          <  1:1048418/150‑1 (MQ=255)
                                             tGGAGTTTGGTTGCGCTGCTATAAATTGAATAATTAAAACTTTGTTGCATATTCATAGGATATTTATCTGGTTTGTTTTTGTGATATTTATTATGCGTATGCTTTAAAAACAAAATTATCTGCAACATGTTGAAATACTGTGCTTTTATg                                                                                                         <  1:2844263/150‑1 (MQ=255)
                                                aGTTTGGTTGCGCTGCTATAAATTGAATAATTAAAACTTTGTTGCATATTCATAGGATATTTATCTGGTTTGTTTTTGTGATATTTATTATGCGTATGCTTTAAAAACAAAATTATCTGCAACATGTTGAAATACTGTGCTTTTATGAAt                                                                                                      >  2:3992529/1‑150 (MQ=255)
                                                  tttGGTTGCGCTGCTATAAATTGAATAATTAAAACTTTGTTGCATATTCATAGGATATTTATCTGGTTTGTGTTTGTGATATTTATTATGCGTATGCTTCAAAAACAAAATTATCTGCAACATGTTGAAATACTGTGCTTTTATGAAttt                                                                                                    >  1:635845/1‑150 (MQ=255)
                                                    tGGTTGCGCTGCTATAAATTGAATAATTAAAACTTTGTTGCATATTCATAGGATATTTATCTGGTTTGTGTTTGTGATATTTATTATGCGTATGCTTCAAAAACAAAATTATCTGCAACATGTTGAAATACTGTGCTTTTATGAATTTGa                                                                                                  <  2:1771922/150‑1 (MQ=255)
                                                              tctATAAATTGAATAATTAAAACTTTGTTGCATATTCATAGGATATTTATCTGGTTTGTTTTTGTGATATTTATTATGCGTATGCTTTAAAAACAAAATTATCTGCAACATGTTGAAATACTGTGCTTTTATGAATTTGATGCGTGtttt                                                                                        >  1:972974/2‑150 (MQ=255)
                                                              gctATAAATTGAATAATTAAAACTTTGTTGCATATTCATAGGATATTTATCTGGTTTGTGTTTGTGATATTTATTATGCGTATGCTTCAAAAACAAAATTATCTGCAACATGTTGAAATACTGTGCTTTTATGAATTTGATGCGTGtttt                                                                                        >  1:2446836/1‑150 (MQ=255)
                                                              gctATAAATTGAATAATTAAAACTTTGTTGCATATTCATAGGATATTTATCTGGTTTGTGTTTGTGATATTTATTATGCGTATGCTTCAAAAACAAAATTATCTGCAACATGTTGAAATACTGTGCTTTTATGAATTTGATGCGTGtttt                                                                                        >  1:2745862/1‑150 (MQ=255)
                                                                 ataAATTGAATAATTAAAACTTTGTTGCATATTCATAGGATATTTATCTGGTTTGTTTTTGTGATATTTATTATGCGTATGCTTTAAAAACAAAATTATCTGCAACATGTTGAAATACTGTGCTTTTATGAATTTGATGCGTGTTTTtct                                                                                     >  2:1946435/1‑150 (MQ=255)
                                                                  taAATTGAATAATTAAAACTTTGTTGCATATTCATAGGATATTTATCTGGTTTGTTTTTGTGATATTTATTATGCGTATGCTTTAAAAACAAAATTATCTGCAACATGTTGAAATACTGTGCTTTTATGAATTTGATGCGTGTTTTtctc                                                                                    >  2:2424243/1‑150 (MQ=255)
                                                                     aTTGAATAATTAAAACTTTGTTGCATATTCATAGGATATTTATCTGGTTTGTGTTTGTGATATTTATTATGCGTATGCTTCAAAAACAAAATTATCTGCAACATGTTGAAATACTGTGCTTTTATGAATTTGATGCGTGTTTTTCTCCAt                                                                                 >  1:1107126/1‑150 (MQ=255)
                                                                      ttGAATAATTAAAACTTTGTTGCATATTCATAGGATATTTATCTGGTTTGTGTTTGTGATATTTATTATGCGTATGCTTCAAAAACAAAATTATCTGCAACATGTTGAAATACTGTGCTTTTATGAATTTGATGCGTGTTTTTCTCCATa                                                                                <  1:1445980/150‑1 (MQ=255)
                                                                      ttGAATAATTAAAACTTTGTTGCATATTCATAGGATATTTATCTGGTTTGTGTTTGTGATATTTATTATGCGTATGCTTCAAAAACAAAATTATCTGCAACATGTTGAAATACTGTGCTTTTATGAATTTGATGCGTGTTTTTCTCCATa                                                                                <  1:1854702/150‑1 (MQ=255)
                                                                       ttaataatTAAAACTTTGTTGCATATTCATAGGATATTTATCTGGTTTGTGTTTGTGATATTTATTATGCGTATGCTTCAAAAACAAAATTATCTGCAACATGTTGAAATACTGTGCTTTTATGAATTTGATGCGTGTTTTTCTCCATaa                                                                               <  1:4103133/148‑1 (MQ=255)
                                                                       tGAATAATTAAAACTTTGTTGCATATTCATAGGATATTTATCTGGTTTGTGTTTGTGATATTTATTATGCGTATGCTTCAAAAACAAAATTATCTGCAACATGTTGAAATACTGTGCTTTTATGAATTTGATGCGTGTTTTTCTCCATaa                                                                               >  1:2682922/1‑150 (MQ=255)
                                                                          ataatTAAAACTTTGTTGCATATTCATAGGATATTTATCTGGTTTGTTTTTGTGATATTTATTATGCGTATGCTTTAAAAACAAAATTATCTGCAACATGTTGAAATACTGTGCTTTTATGAATTTGATGCGTGTTTTTCTCCATAAAtt                                                                            <  2:3889130/150‑1 (MQ=255)
                                                                           taatTAAAACTTTGTTGCATATTCATAGGATATTTATCTGGTTTGTTTTTGTGATATTTATTATGCGTATGCTTTAAAAACAAAATTATCTGCAACATGTTGAAATACTGTGCTTTTATGAATTTGATGCGTGTTTTTCTCCATAAATta                                                                           >  1:2623137/1‑150 (MQ=255)
                                                                            aatTAAAACTTTGTTGCATATTCATAGGATATTTATCTGGTTTGTGTTTGTGATATTTATTATGCGTATGCTTCAAAAACAAAATTATCTGCAACATGTTGAAATACTGTGCTTTTATGAATTTGATGCGTGTTTTTCTCCATAAATtat                                                                          <  1:508819/150‑1 (MQ=255)
                                                                             atTAAAACTTTGTTGCATATTCATAGGATATTTATCTGGTTTGTTTTTGTGATATTTATTATGCGTATGCTTTAAAAACAAAATTATCTGCAACATGTTGAAATACTGTGCTTTTATGAATTTGATGCGTGTTTTTCTACATAAATtata                                                                         >  2:2101371/1‑150 (MQ=255)
                                                                                aaaaCTTTGTTGCATATTCATAGGATATTTATCTGGTTTGTGTTTGTGATATTTATTATGCGTATGCTTCAAAAACAAAATTATCTGCAACATGTTGAAATACTGTGCTTTTATGAATTTGATGCGTGTTTTTCTCCATAAATTatatat                                                                      >  2:755927/1‑150 (MQ=255)
                                                                                 aaaCTTTGTTGCATATTCATAGGATATTTATCTGGTTTGTTTTTGTGATATTTATTATGCGTATGCTTTAAAAACAAAATTATCTGCAACATGTTGAAATACTGTGCTTTTATGAATTTGATGCGTGTTTTTCTCCATAAATTATATATg                                                                     >  2:1236758/1‑150 (MQ=255)
                                                                                      ttgttgCATATTCATAGGATATTTATCTGGTTTGTTTTTGTGATATTTATTATGCGTATGCTTTAAAAACAAAATTATCTGCAACATGTTGAAATACTGTGCTTTTATGAATTTGATGCGTGTTTTTCTCCATAAATTATATATGTCcac                                                                <  2:1103217/150‑1 (MQ=255)
                                                                                       tgttgCATATTCATAGGATATTTATCTGGTTTGTTTTTGTGATATTTATTATGCGTATGCTTTAAAAACAAAATTATCTGCAACATGTTGAAATACTGTGCTTTTATGAATTTGATGCGTGTTTTTCTCCATAAATTATATATGTCcaca                                                               <  2:2543521/150‑1 (MQ=255)
                                                                                          tgCATATTCATATGATATTTATCTTGTTTGTGTTTGTGATATTTATTATGCGTATGCTTCAAAAAAAAAATTATCTGCAACATGTTGAAATACTGTGCTTTTATGAATTTGTTGCGTGTTTTTCTCCATAAATTATATATGTCCACATTc                                                            <  1:2959161/150‑1 (MQ=255)
                                                                                          tgCATATTCATAGGATATTTATCTGGTTTGTGTTTGTGATATTTATTATGCGTATGCTTCAAAAACAAAATTATCTGCAACATGTTGAAATACTGTGCTTTTATGAATTTGATGCGTGTTTTTCTCCATAAATTATATATGTCCACATTc                                                            <  1:3988468/150‑1 (MQ=255)
                                                                                          tgCATATTCATAGGATATTTATCTGGTTTGTGTTTGTGATATTTATTATGCGTATGCTTCAAAAACAAAATTATCTGCAACATGTTGAAATACTGTGCTTTTATGAATTTGATGCGTGTTTTTCTCCATAAATTATATATGTCCACATTc                                                            <  1:1160721/150‑1 (MQ=255)
                                                                                           gCATATTCATAGGATATTTATCTGGTTTGTGTTTGTGATATTTATTATGCGTATGCTTCAAAAACAAAATTATCTGCAACATGTTGAAATACTGTGCTTTTATGAATTTGATGCGTGTTTTTCTCCATAAATTATATATGTCCACATTCg                                                           <  1:2414376/150‑1 (MQ=255)
                                                                                            cATATTCATAGGATATTTATCTGGTTTGTGTTTGTGATATTTATTATGCGTATGCTTCAAAAACAAAATTATCTGCAACATGTTGAAATACTGTGCTTTTATGAATTTGATGCGTGTTTTTCTCCATAAATTATATATGTCCACATTCgg                                                          >  2:341691/1‑150 (MQ=255)
                                                                                             atatTCATAGGATATTTATCTGGTTTGTTTTTGTGATATTTATTATGCGTATGCTTTAAAAGCAAAATTATCTGCAACATGTTGAAATACTGTGCTTTTATGAATTTGATGCGTGTTTTTCTCCATAAATTATATATGTCCACATTCGGa                                                         >  2:1172644/1‑150 (MQ=255)
                                                                                             atatTCATAGGATATTTATCTGGTTTGTTTTTGTGATATTTATTATGCGTATGCTTTAAAAACAAAATTATCTGCAACATGTTGAAATACTGTGCTTTTATGAATTTGATGCGTGTTTTTCTCCATAAATTATATATGTCCACATTCGGa                                                         <  1:1107309/150‑1 (MQ=255)
                                                                                                ttCATAGGATATTTATCTGGTTTGTGTTTGTGATATTTATTATGCGTATGCTTCAAAAACAAAATTATCTGCAACATGTTGAAATACTGTGCTTTTATGAATTTGATGCGTGTTTTTCTCCATAAATTATATATGTCCACATTCGGACtt                                                      <  1:1367749/150‑1 (MQ=255)
                                                                                                 tCATAGGATATTTATCTGGTTTGTTTTTGTGATATTTATTATGCGTATGCTTTAAAAACAAAATTATCTGCAACATGTTGAAATACTGTGCTTTTATGAATTTGATGCGTGTTTTTCTCCATAAATTATATATGTCCACATTCGGACTTa                                                     <  2:1816355/150‑1 (MQ=255)
                                                                                                 tCATAGGATATTTATCTGGTTTGTTTTTGTGATATTTATTATGCGTATGCTTTAAAAACAAAATTATCTGCAACATGTTGAAATACTGTGCTTTTATGAATTTGATGCGTGTTTTTCTCCATAAATTATATATGTCCACATTCGGACTTa                                                     <  2:4202993/150‑1 (MQ=255)
                                                                                                    tAGGATATTTATCTGTTTTGTGTTTGTGATATTTATTATGCGTATGCTTCAAAAACAAAATTATCTGCAACATGTTGAAATACTGTGCTTTTATGAATTTGATGCGTGTTTTTCTCCATAAATTATATATGTCCACATTCGGACTTAggg                                                  <  2:3085964/150‑1 (MQ=255)
                                                                                                       gATATTTATCTGGATTGTTTTTTTGATATTTATTATGCGTATGCTTTAAAAACAAAATTATCTGCAACATGTTGAAATACTGTGCTTTTATGAATTTGATGCGTGTTTTTCTCCATAAATTATATATGTCCACATTCGGACTTAGGGGaa                                               <  1:2493086/150‑1 (MQ=255)
                                                                                                         tatTTATCTGGTTTGTGTTTGTGATATTTATTATGCGTATGCTTCAAAAACAAAATTATCTGCAACATGTTGAAATACTGTGCTTTTATGAATTTGATGCGTGTTTTTCTCCATAAATTATATATGTCCACATTCGGACTTAGGGGAAAg                                             >  1:3017415/1‑150 (MQ=255)
                                                                                                          atTTATCTGGTTTGTTTTTGTGATATTTATTATGCGTATGCTTTAAAAACAAAATTATCTGCAACATGTTGAAATACTGTGCTTTTATGAATTTGATGCGTGTTTTTCTCCATAAATTATATATGTCCACATTCGGACTTAGGGGAAAGa                                            >  2:2007175/1‑150 (MQ=255)
                                                                                                           tttATCTGGTTTGTTTTTGTGATATTTATTATGCGTATGCTTTAAAAACAAAATTATCTGCAACATGTTGAAATACTGTGCTTTTATGAATTTGATGCGTGTTTTTCTCCATAAATTATATATGTCCACATTCGGACTTAGGGGAAAGaa                                           <  1:3242490/150‑1 (MQ=255)
                                                                                                              aTCTGGTTTGTTTTTGTGATATTTATTATGCGTATGCTTTAAAAACAAAATTATCTGCAACATGTTGAAATACTGTGCTTTTATGAATTTGATGCGTGTTTTTCTCCATAAATTATATATGTCCACATTCGGACTTAGGGGAAAGaataa                                        >  2:881925/1‑150 (MQ=255)
                                                                                                               tCTGGTTTGTTTTTGTGATATTTATTATGCGTATGCTTTAAAAACAAAATTATCTGCAACATGTTGAAATACTGTGCTTTTATGAATTTGATGCGTGTTTTTCTCCATAAATTATATATGTCCACATTCGGACTTAGGGGAAAGaataat                                       >  2:1937482/1‑150 (MQ=255)
                                                                                                                  ggTTTGTTTTTGTGATATTTATTATGCGTATGCTTTAAAAACAAAATTATCTGCAACATGTTGAAATACTGTGCTTTTATGAATTTGATGCGTGTTTTTCTCCATAAATTATATATGTCCACATTCGGACTTAGGGGAAAGAATAATTGa                                    <  1:4378780/150‑1 (MQ=255)
                                                                                                                  ggTTTGTGTTTGTGATATTTATTATGCGTATGCTTCAAAAACAAAATTATCTGCAACATGTTGAAATACTGTGCTTTTATGAATTTGATGCGTGTTTTTCTCCATAAATTATATATGTCCACATTCGGACTTAGGGGAAAGAATAATTGa                                    >  2:2170998/1‑150 (MQ=255)
                                                                                                                     ttgtgtttgtgATATTTATTATGCGTATGCTTCAAAAACAAAATTATCTGCAACATGTTGAAATACTGTGCTTTTATGAATTTGATGCGTGTTTTTCTCCATAAATTATATATGTCCACATTCGGACTTAGGGGAAAGAATAATTGAAcc                                 <  1:4530521/150‑1 (MQ=255)
                                                                                                                     ttgtgtttgtgATATTTATTATGCGTATGCTTCAAAAACAAAATTATCTGCAACATGTTGAAATACTGTGCTTTTATGAATTTGATGCGTGTTTTTCTCCATAAATTATATATGTCCACATTCGGACTTAGGGGAAAGAATAATTGAAcc                                 >  1:2267874/1‑150 (MQ=255)
                                                                                                                      tgtttttgtgATATTTATTATGCGTATGCTTTAAAAACAAAATTATCTGCAACATGTTGAAATACTGTGCTTTTATGAATTTGATGCGTGTTTTTCTCCATAAATTATATATGTCCACATTCGGACTTAGGGGAAAGAATAATTGAACCa                                <  2:2218771/150‑1 (MQ=255)
                                                                                                                        tttttgtgATATTTATTATGCGTATGCTTTAAAAACAAAATTATCTGCAACATGTTGAAATACTGTGCTTTTATGAATTTGATGCGTGTTTTTCTCCATAAATTATATATGTCCACATTCGGACTTAGGGGAAAGAATAATTGAACCAtt                              <  1:4050496/148‑1 (MQ=255)
                                                                                                                        tttttgtgATATTTATTATGCGTATGCTTTAAAAACAAAATTATCTGCAACATGTTGAAATACTGTGCTTTTATGAATTTGATGCGTGTTTTTCTCCATAAATTATATATGTCCACATTCGGACTTAGGGGAAAGAATAATTGAACCAtt                              <  2:1534340/148‑1 (MQ=255)
                                                                                                                         gtttgtgATATTTATTATGCGTATGCTTCAAAAACAAAATTATCTGCAACATGTTGAAATACTGTGCTTTTATGAATTTGATGCGTGTTTTTCTCCATAAATTATATATGTCCACATTCGGACTTAGGGGAAAGAATAATTGAACCATTc                             >  1:2051576/1‑150 (MQ=255)
                                                                                                                         gtttgtgATATTTATTATGCGTATGCTTCAAAAACAAAATTATCTGCAACATGTTGAAATACTGTGCTTTTATGAATTTGATGCGTGTTTTTCTCCATAAATTATATATGTCCACATTCGGACTTAGGGGAAAGAATAATTGAACCATTc                             <  2:3331576/150‑1 (MQ=255)
                                                                                                                         gtttgtgATATTTATTATGCGTATGCTTCAAAAACAAAATTATCTGCAACATGTTGAAATACTGTGCTTTTATGAATTTGATGCGTGTTTTTCTCCATAAATTATATATGTCCACATTCGGACTTAGGGGAAAGAATAATTGAACCATTc                             >  1:382086/1‑150 (MQ=255)
                                                                                                                          tttgtgATATTTATTATGCGTATGCTTCAAAAACAAAATTATCTGCAACATGTTGAAATACTGTGCTTTTATGAATTTGATGCGTGTTTTTCTCCATAAATTATATATGTCCACATTCGGACTTAGGGGAAAGAATAATTGAACCATTCg                            <  1:953655/150‑1 (MQ=255)
                                                                                                                            tgtgATATTTATTATGCGTATTCTTTAAAAACAAAATTATCTGCAACATGTTGAAATACTGTGCTTTTATGAATTTGATGCGTGTTTTTCTCCATAAATTATATATGTCCACATTCGGACTTAGGGGAAAGAATAATTGAACCATTCGTc                          <  2:3237517/150‑1 (MQ=255)
                                                                                                                            tgtgATATTTATTATGCGTATGCTTTAAAAACAAAATTATCTGCAACATGTTGAAATACTGTGCTTTTATGAATTTGATGCGTGTTTTTCTCCATAAATTATATATGTCCACATACGGACTTAGGGGAAAGTATAATTGAACCATTCGTc                          >  1:3070339/1‑150 (MQ=255)
                                                                                                                             gtgATATTTATTATGCGTATGCTTTAAAAACAAAATTATCTGCAACATGTTGAAATACTGTGCTTTTATGAATTTGATGCGTGTTTTTCTCCATAAATTATATATGTCCACATTCGGACTTAGGGGAAAGAATAATTGAACCATTCGTCt                         <  1:717182/150‑1 (MQ=255)
                                                                                                                               gATATTTATTATGCGTATGCTTTAAAAACAAAATTATCTGCAACATGTTGAAATACTGTGCTTTTATGAATTTGATGCGTGTTTTTCTCCATAAATTATATATGTCCACATTCGGACTTAGGGGAAAGAATAATTGAACCATTCGTCTGt                       >  2:4379338/1‑150 (MQ=255)
                                                                                                                                atatTTATTATGCGTATGCTTTAAAAACAAAATTATCTGCAACATGTTGAAATACTGTGCTTTTATGAATTTGATGCGTGTTTTTCTCCATAAATTATATATGTCCACATTCGGACTTAGGGGAAAGAATAATTGAACCATTCGTCTGTa                      >  2:2467120/1‑150 (MQ=255)
                                                                                                                                  atttattATGCGTATGCTTCAAAAACAAAATTATCTGCAACATGTTGAAATACTGTGCTTTTATGAATTTGATGCGTGTTTTTCTCCATAAATTATATATGTCCACATTCGGACTTAGGGGAAAGAATAATTGAACCATTCGTCTGTAAc                    <  2:1626917/150‑1 (MQ=255)
                                                                                                                                  atttattATGCGTATGCTTCAAAAACAAAATTATCTGCAACATGTTGAAATACTGTGCTTTTATGAATTTGATGCGTGTTTTTCTCCATAAATTATATATGTCCACATTCGGACTTAGGGGAAAGAATAATTGAACCATTCGTCTGTAAc                    <  1:3257403/150‑1 (MQ=255)
                                                                                                                                  atttattATGCGTATGCTTCAAAAACAAAATTATCTGCAACATGTTGAAATACTGTGCTTTTATGAATTTGATGCGTGTTTTTCTCCATAAATTATATATGTCCACATTCGGACTTAGGGGAAAGAATAATTGAACCATTCGTCTGTAAc                    <  2:4395837/150‑1 (MQ=255)
                                                                                                                                   tttattATGCGTATGCTTTAAAAACAAAATTATCTGCAACATGTTGAAATACTGTGCTTTTATGAATTTGATGCGTGTTTTTCTCCATAAATTATATATGTCCACATTCGGACTTAGGGGAAAGAATAATTGAACCATTCGTCTGTAACg                   >  2:1327225/1‑150 (MQ=255)
                                                                                                                                     tattatGCGTATGCTTCAAAAACAAAATTATCTGCAACATGTTGAAATACTGTGCTTTTATGAATTTGATGCGTGTTTTTCTCCATAAATTATATATGTCCACATTCGGACTTAGGGGAAAGAATAATTGAACCATTCGTCTGTAACgca                 <  2:2356027/150‑1 (MQ=255)
                                                                                                                                       ttatGCGTATGCTTTAAAAACAAAATTATCTGCAACATGTTGAAATACTGTGCTTTTATGAATTTGATGCGTGTTTTTCTCCATAAATTATATATGTCCACATTCGGACTTAGGGGAAAGAATAATTGAACCATTCGTCTGTAACgcagc               >  1:636884/1‑150 (MQ=255)
                                                                                                                                       ttatGCGTATGCTTCAAAAACAAAATTATCTGCAACATGTTGAAATACTGTGCTTTTATGAATTTGATGCGTGTTTTTCTCCATAAATTATATATGTCCACATTCGGACTTAGGGGAAAGAATAATTGAACCATTCGTCTGTAACgcagc               >  2:240149/1‑150 (MQ=255)
                                                                                                                                          tGCGTATGCTTTAAAAACAAAATTATCTGCAACATGTTGAAATACTGTGCTTTTATGAATTTGATGCGTGTTTTTCTCCATAAATTATATATGTCCACATTCGGACTTAGGGGAAAGAATAATTGAACCATTCGTCTGTAACGCAGCATa            <  2:3389458/150‑1 (MQ=255)
                                                                                                                                            cGTATGCTTTAAAAACAAAATTATCTGCAACATGTTGAAATACTGTGCTTTTATGAATTTGATGCGTGTTTTTCTCCATAAATTATATATGTCCACATTCGGACTTAGGGGAAAGAATAATTGAACCATTCGTCTGTAACGCAGCATAAt          <  1:4623094/150‑1 (MQ=255)
                                                                                                                                             gTATGCTTTAAAAACAAAATTATCTGCAACATGTTGAAATACTGTGCTTTTATGAATTTGATGCGTGTTTTTCTCCATAAATTATATATGTCCACATTCGGACTTAGGGGAAAGAATAATTGAACCATTCGTCTGTAACGCAGCATAATc         <  2:1935779/150‑1 (MQ=255)
                                                                                                                                                tGCTTTAAAAACAAAATTATCTGCAACATGTTGAAATACTGTGCTTTTATGAATTTGATGCGTGTTTTTCTCCATAAATTATATATGTCCACATTCGGACTTAGGGGAAAGAATAATTGAACCATTCGTCTGTAACGCAGCATAATCGtt      <  2:295087/150‑1 (MQ=255)
                                                                                                                                                tGCTTTAAAAACAAAATTATCTGCAACATGTTGAAATACTGTGCTTTTATGAATTTGATGCGTGTTTTTCTCCATAAATTATATATGTCCACATTCGGACTTAGGGGAAAGAATAATTGAACCATTCGTCTGTAACGCAGCATAATCGtt      <  2:2569935/150‑1 (MQ=255)
                                                                                                                                                tGCTTCAAAAACAAAATTATCTGCAACATGTTGAAATACTGTGCTTTTATGAATTTGATGCGTGTTTTTCTCCATAAATTATATATGTCCACATTCGGACTTAGGGGAAAGAATAATTGAACCATTCGTCTGTAACGCAGCATAATCGtt      <  2:1376507/150‑1 (MQ=255)
                                                                                                                                                tGCTTCAAAAACAAAATTATCTGCAACATGTTGAAATACTGTGCTTTTATGAATTTGATGCGTGTTTTTCTCCATAAATTATATATGTCCACATTCGGACTTAGGGGAAAGAATAATTGAACCATTCGTCTGTAACGCAGCATAATCGtt      <  2:2432813/150‑1 (MQ=255)
                                                                                                                                                 gCTTCAAAAACAAAATTATCTGCAACATGTTGAAATACTGTGCTTTTATGAATTTGATGCGTGTTTTTCTCCATAAATTATATATGTCCACATTCGGACTTAGGGGAAAGAATAATTGAACCATTCGTCTGTAACGCAGCATAATCGTTa     <  1:1324248/150‑1 (MQ=255)
                                                                                                                                                  cTTTAAAAACAAAATTATCTGCAACATGTTGAAATACTGTGCTTTTATGAATTTGATGCGTGTTTTTCTCCATAAATTATATATGTCCACATTCGGACTTAGGGGAAAGAATAATTGAACCATTCGTCTGTAACGCAGCATAATCGTTAg    >  2:4204697/1‑150 (MQ=255)
                                                                                                                                                    tCAAAAACAAAATTATCTGCAACATGTTGAAATACTGTGCTTTTATGAATTTGATGCGTGTTTTTCTCCATAAATTATATATGTCCACATTCGGACTTAGGGGAAAGAATAATTGAACCATTCGTCTGTAACGCAGCATAATCGTTAgcg  <  1:1585618/150‑1 (MQ=255)
                                                                                                                                                     |                                                                                                                                                    
GAAAATATTTTTAATCTTTATTTATAGCTGTTGGTTATTATTTTTTGGAGTTTGGTTGCGCTGCTATAAATTGAATAATTAAAACTTTGTTGCATATTCATAGGATATTTATCTGGTTTGTGTTTGTGATATTTATTATGCGTATGCTTCAAAAACAAAATTATCTGCAACATGTTGAAATACTGTGCTTTTATGAATTTGATGCGTGTTTTTCTCCATAAATTATATATGTCCACATTCGGACTTAGGGGAAAGAATAATTGAACCATTCGTCTGTAACGCAGCATAATCGTTAGCG  >  CP009273/385336‑385633

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A