Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F202 I0 R1 1397 275.7 9089454 95.2% 8653160 150.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP009273 385,485 C→T 49.0% intergenic (‑302/‑222) hemB ← / → yaiT 5‑aminolevulinate dehydratase (porphobilinogen synthase)/pseudogene, autotransporter family;putative structure; Not classified; interrupted by IS3; putative flagellin structural protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP009273385,4850CT49.0% 14.1 / inf 286intergenic (‑302/‑222)hemB/yaiT5‑aminolevulinate dehydratase (porphobilinogen synthase)/pseudogene, autotransporter family;putative structure; Not classified; interrupted by IS3; putative flagellin structural protein
Reads supporting (aligned to +/- strand):  ref base C (82/64);  new base T (83/57);  total (165/121)
Fisher's exact test for biased strand distribution p-value = 6.33e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.60e-01

Only 100 of 290 total aligned reads displayed.

GAAAATATTTTTAATCTTTATTTATAGCTGTTGGTTATTATTTTTTGGAGTTTGGTTGCGCTGCTATAAATTGAATAATTAAAACTTTGTTGCATATTCATAGGATATTTATCTGGTTTGTGTTTGTGATATTTATTATGCGTATGCTTCAAAAACAAAATTATCTGCAACATGTTGAAATACTGTGCTTTTATGAATTTGATGCGTGTTTTTCTCCATAAATTATATATGTCCACATTCGGACTTAGGGGAAAGAATAATTGAACCATTCGTCTGTAACGCAGCATAATCGTTAGCGC  >  CP009273/385336‑385634
                                                                                                                                                     |                                                                                                                                                     
  aaaTATTTTTAATCTTTATTTATAGCTGTTGGTTATTATTTTTTGGAGTTTGGTTGCGCTGCTATAAATTGAATAATTAAAACTTAGTTGCATATTCATAGGATATTTATCTGGTTTGTTTTTTTGATATTTATTATGCGTATGCTTTaa                                                                                                                                                     >  2:2314993/1‑150 (MQ=255)
     tatTTTTAATCTTTATTTATAGCTGTTGGTTATTATTTTTTGGAGTTTGGTTGCGCTGCTATAAATTGAATAATTAAAACTTTGTTGCATATTCATAGGATATTTATCTGGTTTGTTTTTGTAATATTTATTATGCGTATGCTTTaaaaa                                                                                                                                                  >  2:473435/1‑150 (MQ=255)
      atTTTTAATCTTTATTTATAGCTGTTGGTTATTATTTTTTGGAGTTTGGTTGCGCTGCTATAAATTGAATAATTAAAACTTTGTTGCATATTCATAGGATATTTATCTGGTTTGTGTTTGTGATATTTATTATGCGTATGCTTCAAAAAc                                                                                                                                                 <  1:1533071/150‑1 (MQ=255)
             aTCTTTATTTATAGCTGTTGGTTATTATTTTTTGGAGTTTGGTTGCGCTGCTATAAATTGAATAATTAAAACTTTGTTGCATATTCATAGGATATTTATCTGGTTTGTTTTTGTGATATTTATTATGCGTATGCTTTAAAAACAAAATTa                                                                                                                                          >  1:3201978/1‑150 (MQ=255)
              tCTTTATTTATAGCTGTTGGTTATTATTTTTTGGAGTTTGGTTGCGCTGCTATAAATTGAATAATTAAAACTTTGTTGCATATTCATAGGATATTTATCTGGTTTGTTTTTGTGATATTTATTATGCGTATGCTTTAAAAACAAAATTAt                                                                                                                                         >  1:3370495/1‑150 (MQ=255)
                tttatttaTAGCTGTTGGTTATTATTTTTTGGAGTTTGGTTGCGCTGCTATAAATTGAATAATTAAAACTTTGTTGCATATTCATAGGATATTTATCTGGTTTGTTTTTGTGATATTTATTATGCGTATGCTTTAAAAACAAAATTATCt                                                                                                                                       >  1:2640881/1‑150 (MQ=255)
                  tatttatAGCTGTTGGTTATTATTTTTTGGAGTTTGGTTGCGCTGCTATAAATTGAATAATTAAAACTTTGTTGCATATTCATAGGATATTTATCTGGTTTGTTTTTGTGATATTTATTATGCGTATGCTTTAAAAACAAAATTATCTGc                                                                                                                                     >  1:2734039/1‑150 (MQ=255)
                     ttatAGCTGTTGGTTATTATTTTTTGGAGTTTGGTTGCGCTGCTATAAATTGAATAATTAAAACTTTGTTGCATATTCATAGGATATTTATCTGGTTTGTGTTTGTGATATTTATTATGCGTATGCTTCAAAAACAAAATTATCTGCAAc                                                                                                                                  <  2:214532/150‑1 (MQ=255)
                      tataGCTGTTGGTTATTATTTTTTGGAGTTTGGTTGCGCTGCTATAAATTGAATAATTAAAACTTTGTTGCATATTCATAGGATATTTATCTGGTTTGTTTTTGTGATATTTATTATGCGTATGCTTTAAAAACAAAATTATCTGCAACa                                                                                                                                 <  1:3604806/150‑1 (MQ=255)
                      tataGCTGTTGGTTATTATTTTTTGGAGTTTGGTTGCGCTGCTATAAATTGAATAATTAAAACTTTGTTGCATATTCATAGGATATTTATCTGGTTTGTGTTTGTGATATTTATTATGCGTATGCTTCAAAAACAAAATTATCTGCAACa                                                                                                                                 >  2:309188/1‑150 (MQ=255)
                           cTGTTGGTTATTATTTTTTGGAGTTTGGTTGCGCTGCTATAAATTGAATAATTAAAACTTTGTTGCATATTCATAGGATATTTATCTGGTTTGTGTTTGTGATATTTATTATGCGTATGCTTCAAAAACAAAATTATCTGCAACATGTTg                                                                                                                            <  2:149036/150‑1 (MQ=255)
                             gTTGGTTATTATTTTTTGGAGTTTGGTTGCGCTGCTATAAATTGAATAATTAAAACTTTGTTGCATATTCATAGGATATTTATCTGGTTTGTGTTTGTGATATTTATTATGCGTATGCTTCAAAAACAAAATTATCTGCAACATGTTGaa                                                                                                                          <  1:452759/150‑1 (MQ=255)
                             gTTGGTTATTATTTTTTGGAGTTTGGTTGCGCTGCTATAAATTGAATAATTAAAACTTTGTTGCATATTCATAGGATATTTATCTGGTTTGTGTTTGTGATATTTATTATGCGTATGCTTCAAAAACAAAATTATCTGCAACATGTTGaa                                                                                                                          >  2:853597/1‑150 (MQ=255)
                              ttGGTTATTATTTTTTGGAGTTTGGTTGCGCTGCTATAAATTGAATAATTAAAACTTTGTTGCATATTCATAGGATATTTATCTGGTTTGTTTTTGTGATATTTATTATGCGTATGCTTTAAAAACAAAATTATCTGCAACATGTTGaaa                                                                                                                         >  2:177989/1‑150 (MQ=255)
                               tGGTTATTATTTTTTGGAGTTTGGTTGCGCTGTTATAAATTGAATAATTAAAACTTTGTTGCATATTCATAGGATATTTATCTGGTTTGTGTTTGTGATATTTATTATGCGTATGCTTCAAAAACAAAATTATCTCCAACATGTTGAAAt                                                                                                                        <  1:1911229/150‑1 (MQ=255)
                               tGGTTATTATTTTTTGGAGTTTGGTTGCGCTGCTATAAATTGAATAATTAAAACTTTGTTGCATATTCATAGGATATTTATCTGGTTTGTTTTTGTGATATTTATTATGCGTATGCTTTAAAAACAAAATTATCTGCAACATGTTGAAAt                                                                                                                        >  2:3864060/1‑150 (MQ=255)
                                   tattatTTTTTGGAGTTTGGTTGCGCTGCTATAAATTGAATAATTAAAACTTTGTTGCATATTCATAGGATATTTATCTGGTTTGTGTTTGTGATATTTATTATGCGTATGCTTCAAAAACAAAATTATCTGCAACATGTTGAAATACtg                                                                                                                    <  1:2568384/150‑1 (MQ=255)
                                    attattTTTTGGAGTTTGGTTGCGCTGCTATAAATTGAATAATTAAAACTTTGTTGCATATTCATAGGATATTTATCTGGTTTGTTTTTGTGATATTTATTATGCGTATGCTTTAAAAACAAAATTATCTGCAACATGTTGAAATACtgt                                                                                                                   <  2:2516035/150‑1 (MQ=255)
                                      tattTTTTGGAGTTTGGTTGCGCTGCTATAAATTGAATAATTAAAACTTTGTTGCATATTCATAGGATATTTATCTGGTTTGTTTTTGTGATATTTATTATGCGTATGCTTTAAAAACAAAATTATCTGCAACATGTTGAAATACTGTGc                                                                                                                 >  2:686777/1‑150 (MQ=255)
                                        ttttttGGAGTTTGGTTGCGCTGATATAAATTGAATAATTAAAACTTTGTTGCATATTCATAGGATATTTATCTGGTTTGTTTTTGTGATATTTATTATGCGTATGCTTTAAAAACAAAATTATCTGCAACATGTTGAAATACTGTGCtt                                                                                                               <  2:2823951/150‑1 (MQ=255)
                                            ttGGAGTTTGGTTGCGCTGCTATAAATTGAATAATTAAAACTTTGTTGCATATTCATAGGATATTTATCTGGTTTGTTTTTGTGATATTTATTATGCGTATGCTTTAAAAACAAAATTATCTGCAACATGTTGAAATACTGTGCTTTTAt                                                                                                           >  2:564671/1‑150 (MQ=255)
                                            ttGGAGTTTGGTTGCGCTGCTATAAATTGAATAATTAAAACTTTGTTGCATATTCATAGGATATTTATCTGGTTTGTTTTTGTGATATTTATTATGCGTATGCTTTAAAAACAAAATTATCTGCAACATGTTGAAATACTGTGCTTTTAt                                                                                                           <  2:371647/150‑1 (MQ=255)
                                               gAGTTTGGTTGCGCTGCTATAAATTGAATAATTAAAACTTTGTTGCATATTCATAGGATATTTATCTGGTTTGTGTTTGTGATATTTATTATGCGTATGCTTCAAAAACAAAATTATCTGCAACATGTTGAAATACTGTGCTTTTATGaa                                                                                                        >  1:1013867/1‑150 (MQ=255)
                                               gAGTTTGGTTGCGCTGCTATAAATTGAATAATTAAAACTTTGTTGCATATTCATAGGATATTTATCTGGTTTGTGTTTGTGATATTTATTATGCGTATGCTTCAAAAACAAAATTATCTGCAACATGTTGAAATACTGTGCTTTTATGaa                                                                                                        >  1:3292550/1‑150 (MQ=255)
                                                aGTTTGGTTGCGCTGCTATAAATTGAATAATTAAAACTTTGTTGCATATTCATAGGATATTTATCTGGTTTGTGTTTGTGATATTTATTATGCGTATGCTTCAAAAACAAAATTATCTGCAACATGTTGAAATACTGTGCTTTTATGAAt                                                                                                       <  2:1538337/150‑1 (MQ=255)
                                                     ggTTGCGCTGCTATAAATTGAATAATTAAAACTTTGTTGCATATTCATAGGATATTTATCTGGTTTGTGTTTGTGATATTTATTATGCGTATGCTTCAAAAACAAAATTATCTGCAACATGTTGAAATACTGTGCTTTTATGAGTTTGAt                                                                                                  >  1:746535/1‑150 (MQ=255)
                                                     ggTTGCGCTGCTATAAATTGAATAATTAAAACTTTGTTGCATATTCATAGGATATTTATCTGGTTTGTGTTTGTGATATTTATTATGCGTATGCTTCAAAAACAAAATTATCTGCAACATGTTGAAATACTGTGCTTTTATGAATTTGAt                                                                                                  >  1:1475754/1‑150 (MQ=255)
                                                      gTTGCGCTGCTATAAATTGAATAATTAAAACTTTGTTGCATATTCATAGGATATTTATCTGGTTTGTTTTTGTGATATTTATTATGCGTATGCTTTAAAAACAAAATTATCTGCAACATGTTGAAATACTGTGCTTTTATGAATTTGATg                                                                                                 <  2:1762076/150‑1 (MQ=255)
                                                         gcgcTGCAATAAATTGAATAATTAAAACTTTGTTGCATCGTCATAGGATATTTATCTGGTTTGTGTTTGTGATATTTATTATGCGTATGCTTCAAAAACAAAATTATCTGCAACATGTTGAAATACTGTGCTTTTATGAATTTGATGCgt                                                                                              >  1:1307728/1‑150 (MQ=255)
                                                           gctgctATAAATTGAATAATTAAAACTTTGTTGCATATTCATAGGATATTTATCTGGTTTGTTTTTGTGATATTTATTATGCGTATGCTTTAAAAACAAAATTATCTGCAACATGTTGAAATACTGTGCTTTTATGAATTTGATGCgtgt                                                                                            <  2:144269/150‑1 (MQ=255)
                                                              gctATAAATTGAATAATTAAAACTTTGTTGCATATTCATAGGATATTTATCTGGTTTGTTTTTGTGATATTTATTATGCGTATGCTTTAAAAACAAAATTATCTGCAACATGTTGAAATACTGTGCTTTTATGAATTTGATGCGTGtttt                                                                                         <  1:3905177/150‑1 (MQ=255)
                                                              gctATAAATTGAATAATTAAAACTTTGTTGCATATTCATAGGATATTTATCTGGTTTGTTTTTGTGATATTTATTATGCGTATGCTTTAAAAACAAAATTATCTGCAACATGTTGAAATACTGTGCTTTTATGAATTTGATGCGTGtttt                                                                                         <  1:33444/150‑1 (MQ=255)
                                                               ctATAAATTGAATAATTAAAACTTTGTTGCATATTCATAGGATATTTATCTGGTTTGTTTTTGTGATATTTATTATGCGTATGCTTTAAAAACAAAATTATCTGCAACATGTTGAAATACTGTGCTTTTATGAATTTGATGCGTGttttt                                                                                        >  1:2427392/1‑150 (MQ=255)
                                                                 ataAATTGAATAATTAAAACTTTGTTGCATATTCATAGGATATTTATCTGGTTTGTTTTTGTGATATTTATTATGCGTATGCTTTAAAAACAAAATTATCTGCAACATGTTGAAATACTGTGCTTTTATGAATTTGATGCGTGTTTTtct                                                                                      >  1:694545/1‑150 (MQ=255)
                                                                 ataAATTGAATAATTAAAACTTTGTTGCATATTCATAGGATATTTATCTGGTTTGTTTTTGTGATATTTATTATGCGTATGCTTTAAAAACAAAATTATCTGCAACATGTTGAAATACTGTGCTTTTATGAATTTGATGCGTGTTTTtct                                                                                      <  2:2966291/150‑1 (MQ=255)
                                                                 ataAATTGAATAATTAAAACTTTGTTGCATATTCATAGGATATTTATCTGGTTTGTGTTTGTGATATTTATTATGCGTATGCTTCAAAAACAAAATTATCTGCAACATGTTGAAATACTGTGCTTTTATGAATTTGATGCGTGTTTTtct                                                                                      >  1:1483417/1‑150 (MQ=255)
                                                                 ataAATTGAATAATTAAAACTTTGTTGCATATTCATAGGATATTTATCTGGTTTGTGTTTGTGATATTTATTATGCGTATGCTTCAAAAACAAAATTATCTGCAACATGTTGAAATACTGTGCTTTTATGAAGTTGATGCGTGTTTTtct                                                                                      >  1:2874333/1‑150 (MQ=255)
                                                                  taAATTGAATAATTAAAACTTTGTTGCATATTCATAGGATATTTATCTGGTTTGTTTTTGTGATATTTATTATGCGTATGCTTTAAAAACAAAATTATCTGCAACATGTTGAAATACTGTGCTTTTATGAATTTGATGCGTGTTTTtctc                                                                                     >  1:438261/1‑150 (MQ=255)
                                                                  taAATTGAATAATTAAAACTTTGTTGCATATTCATAGGATATTTATCTGGTTTGTGTTTGTGATATTTATTATGCGTATGCTTCAAAAACAAAATTATCTGCAACATGTTGAAATACTGTGCTTTTATGAATTTGATGCGTGTTTTtctc                                                                                     >  1:3783623/1‑150 (MQ=255)
                                                                  taAATTGAATAATTAAAACTTTGTTGCATATTCATAGGATATTTATCTGGTTTGTGTTTGTGATATTTATTATGCGTATGCTTCAAAAACAAAATTATCTGCAACATGTTGAAATACTGTGCTTTTATGAATTTGATGCGTGTTTTtctc                                                                                     >  2:1020219/1‑150 (MQ=255)
                                                                  taAATTGAATAATTAAAACTTTGTTGCATATTCATAGGATATTTATCTGGTTTGTGTTTGTGATATTTATTATGCGTATGCTTCAAAAACAAAATTATCTGCAACATGTTGAAATACTGTGCTTTTATGAATTTGATGCGTGTTTTtctc                                                                                     >  1:296195/1‑150 (MQ=255)
                                                                        gAATAATTAAAACTTTGTTGCATATTCATAGGATATTTATCTGGTTTGTGTTTGTGATATTTATTATGCGTATGCTTCAAAAACAAAATTATCTGCAACATGTTGAAATACTGTGCTTTTATGAATTTGATGCGTGTTTTTCTCCATaaa                                                                               <  2:733925/150‑1 (MQ=255)
                                                                         aataatTAAAACTTTGTTGCATATTCATAGGATATTTATCTGGTTTGTTTTTGTGATATTTATTATGCGTATGCTTTAAAAACAAAATTATCTGCAACATGTTGAAATACTGTGCTTTTATGAATTTGATGCGTGTTTTTCTCCATAAAt                                                                              >  1:1059907/1‑150 (MQ=255)
                                                                           taatTAAAACTTTGTTGCATATTCATAGGATATTTATCTGGTTTGTGTTTGTGATATTTATTATGCGTATGCTTCAAAAACAAAATTATCTGCAACATGTTGAAATACTGTGCTTTTATGAATTTGATGCGTGTTTTTCTCCATAAATta                                                                            >  2:1858916/1‑150 (MQ=255)
                                                                            aatTAAAACTTTGTTGCATATTCATAGGATATTTATCTGGTTTGTGTTTGTGATATTTATTATGCGTATGCTTCAAAAACAAAATTATCTGCAACATGTTGAAATACTGTGCTTTTATGAATTTGATGCGTGTTTTTCTCCATAAATtat                                                                           <  2:4187720/150‑1 (MQ=255)
                                                                            aatTAAAACTTTGTTGCATATTCATAGGATATTTATCTGGTTTGTGTTTGTGATATTTATTATGCGTATGCTTCAAAAACAAAATTATCTGCAACATGTTGAAATACTGTGCTTTTATGAATTTGATGCGTGTTTTTCTCCATAAATtat                                                                           <  2:3225193/150‑1 (MQ=255)
                                                                            aatTAAAACTTTGTTGCATATTCATAGGATATTTATCTGGTTTGTGTTTGTGATATTTATTATGCGTATGCTTCAAAAACAAAATTATCTGCAACATGTTGAAATACTGTGCTTTTATGAATTTGATGCGTGTTTTTCTCCATAAATtat                                                                           <  2:860987/150‑1 (MQ=255)
                                                                             atTAAAACTTTGTTGAATATTAATAGGATATTTATCTGGTTTGTGTTTGTGATATTTATTATGCGTATGCTTCAAAAACAAAATTATCTGCAACATGTTGAAATACTGTGCTTTTATGAATTTGATGCGTGTTTTTCTCCATAAATtata                                                                          <  2:4346792/150‑1 (MQ=255)
                                                                              ttAAAACTTTGTTGCATATTCATAGGATATTTATCTGGTTTGTTTTTGTGATATTTATTATGCGTATGCTTTAAAAACAAAATTATCTGCAACATGTTGAAATACTGTGCTTTTATGAATTTGATGCGTGTTTTTCTCCATAAATtatat                                                                         <  2:1906187/150‑1 (MQ=255)
                                                                               tAAAACTTTGTTGCATATTCATAGGATATTTATCTGGTTTGTTTTTGTGATATTTATTATGCGTATGCTTTAAAATCAAAATTATCTGCAACATGTTGAAATACTGTGCTTTTATGAATTTGATGCGTGTTTTTCTCCATAAATtatata                                                                        >  1:2972899/1‑150 (MQ=255)
                                                                               tAAAACTTTGTTGCATATTCATAGGATATTTATCTGGTTTGTTTTTGTGATATTTATTATGCGTATGCTTTAAAAACAAAATTATCTGCAACATGTTGAAATACTGTGCTTTTATGAATTTGATGCGTGTTTTTCTCCATAAATtatata                                                                        >  1:692844/1‑150 (MQ=255)
                                                                               tAAAACTTTGTTGCATATTCATAGGATATTTATCTGGTTTGTGTTTGTGATATTTATTATGCGTATGCTTCAAAAACAAAATTATCTGCAACATGTTGAAATACTGTGCTTTTATGAATTTGATGCGTGTTTTTCTCCATAAATtatata                                                                        >  1:452040/1‑150 (MQ=255)
                                                                               tAAAACTTTGTTGCATATTCATAGGATATTTATCTGGTTTGTGTTTGTGATATTTATTATGCGTATGCTTCAAAAACAAAATTATCTGCAACATGTTGAAATACTGTGCTTTTATGAATTTGATGCGTGTTTTTCTCCATAAATtatata                                                                        >  1:408855/1‑150 (MQ=255)
                                                                                 aaaCTTTGTTGCATATTCATAGGATATTTATCTGGTTTGTTTTTGTGATATTTATTATGCGTATGCTTTAAAAACAAAATTATCTGCAACATGTTGAAATACTGTGCTTTTATGAATTTGATGCGTGTTTTTCTCCATAAATTATATATg                                                                      >  1:1685211/1‑150 (MQ=255)
                                                                                 aaaCTTTGTTGCATATTCATAGGATATTTATCTGGTTTGTGTTTGTGATATTTATTATGCGTATGCTTCAAAAACAAAATTATCTGCAACATGTTGAAATACTGTGCTTTTATGAATTTGATGCGTGTTTTTCTCCATAAATTATATATg                                                                      >  1:4050184/1‑150 (MQ=255)
                                                                                  aaCTTTGTTGCATATTCATAGGATATTTATCTGGTTTGTTTTTGTGATATTTATTATGCGTATGCTTTAAAAACAAAATTATCTGCAACATGTTGAAATACTGTGCTTTTATGAATTTGATGCGTGTTTTTCTCCATAAATTATATATGt                                                                     <  1:3263059/150‑1 (MQ=255)
                                                                                         ttgCATATTCATAGGATATTTATCTGGTTTGTTTTTGTGATATTTATTATGCGTATGCTTTAAAAACAAAATTATCTGCAACATGTTGAAATACTGTGCTTTTATGAATTTGATGCGTGTTTTTCTCCATAAATTATATATGTCCACAtt                                                              <  1:564671/150‑1 (MQ=255)
                                                                                         ttgCATATTCATAGGATATTTATCTGGTTTGTGTTTGTGATATTTATTATGCGTATGCTTCAAAAACAAAATTATCTGCAACATGTTGAAATACTGTGCTTTTATGAATTTGATGCGTGTTTTTCTCCATAAATTATATATGTCCACAtt                                                              <  1:2877544/150‑1 (MQ=255)
                                                                                          tgCATATTCATAGGATATTTATCTGGTTTGTTTTTGTGATATTTATTATGCGTATGCTTTAAAAACAAAATTATCTGCAACATGTTGAAATACTGTGCTTTTATGAATTTGATGCGTGTTTTTCTCCATAAATTATATATGTCCACATTc                                                             <  2:438261/150‑1 (MQ=255)
                                                                                              tatTCATAGGATATTTATCTGGTTTGTTTTTGTGATATTTATTATGCGTATGCTTTAAAAACAAAATTATCTGCAACATGTTGAAATACTGTGCTTTTATGAATTTGATGCGTGTTTTTCTCCATAAATTATATATGTCCACATTCGGAc                                                         >  2:1891592/1‑150 (MQ=255)
                                                                                              tatTCATAGGATATTTATCTGGTTTGTGTTTGTGATATTTATTATGCGTATGCTTCAAAAACAAAATTATCTGCAACATGTTGAAATACTGTGCTTTTATGAATTTGATGCGTGTTTTTCTCCATAAATTATATATGTCCACATTCGGAc                                                         <  1:972869/150‑1 (MQ=255)
                                                                                               atTCATAGGATATTTATCTGGTTTGTTTTTGTGATATTTATTATGCGTATGCTTTAAAAACAAAATTATCTGCAACATGTTGAAATACTGTGCTTTTATGAATTTGATGCGTGTTTTTCTCCATAAATTATATATGTCCACATTCGGACt                                                        <  2:2495740/150‑1 (MQ=255)
                                                                                               atTCATAGGATATTTATCTGGTTTGTTTTTGTGATATTTATTATGCGTATGCTTTAAAAACAAAATTATCTGCAACATGTTGAAATACTGTGCTTTTATGAATTTGATGCGTGTTTTTCTCCATAAATTATATATGTCCACATTCGGACt                                                        >  1:963352/1‑150 (MQ=255)
                                                                                               atTCATAGGATATTTATCTGGTTTGTGTTTGTGATATTTATTATGCGTATGCTTCAAAAACAAAATTATCTGCAACATGTTGAAATACTGTGCTTTTATGAATTTGATGCGTGTTTTTCTCCATAAATTATATATGTCCACATTCGGACt                                                        <  2:2248936/150‑1 (MQ=255)
                                                                                               atTCATAGGATATTTATCTGGTTTGTGTTTGTGATATTTATTATGCGTATGCTTCAAAAACAAAATTATCTGCAACATGTTGAAATACTGTGCTTTTATGAATTTGATGCGTGTTTTTCTCCATAAATTATATATGTCCACATTCGGACt                                                        <  2:3135568/150‑1 (MQ=255)
                                                                                                 tCATAGGATATTTATCTGGTTTGTGTTTGTGATATTTATTATGCGTATGCTTCAAAAACAAAATTATCTGCAACATGTTGAAATACTGTGCTTTTATGAATTTGATGCGTGTTTTTCTCCATAAATTATATATGTCCACATTCGGACTTa                                                      <  2:677043/150‑1 (MQ=255)
                                                                                                    tAGGATATTTATCTGGTTTGTTTTTGTGATATTTATTATGCGTATGCTTTAAAAACAAAATTATCTGCAACATGTTGAAATACTGTGCTTTTATGAATTTGATGCGTGTTTTTCTCCATAAATTATATATGTCCACATTCGGACTTAggg                                                   >  2:2619811/1‑150 (MQ=255)
                                                                                                       gATATTTATCTGGTTTGTGTTTGTGATATTTATTATGCGTATGCTTCAAAAACAAAATTATCTGCAACATGTTGAAATACTGTGCTTTTATGAATTTGATGCGTGTTTTTCTCCATAAATTATATATGTCCACATTCGGACTTAGGGGaa                                                <  1:57439/150‑1 (MQ=255)
                                                                                                         tatTTATCTGGTTTGTTTTTGTGATATTTATTATGCGTATGCTTTAAAAACAAAATTATCTGCAACATGTTGAAATACTGTGCTTTTATGAATTTGATGCGTGTTTTTCTCCATAAATTATATATGTCCACATTCGGACTTAGGGGAAAg                                              >  2:438341/1‑150 (MQ=255)
                                                                                                         tatTTATCTGGTTTGTGTTTGTGATATTTATTATGCGTATGCTTCAAAAACAAAATTATCTGCAACATGTTGAAATACTGTGCTTTTATGAATTTGATGCGTGTTTTTCTCCATAAATTATATATGTCCACATTCGGACTTAGGGGAAAg                                              <  1:480445/150‑1 (MQ=255)
                                                                                                              aTCTGGTTTGTGTTTGTGATATTTATTATGCGTATGCTTCAAAAACAAAATTATCTGCAACATGTTGAAATACTGTGCTTTTATGAATTTGATGCGTGTTTTTCTCCATAAATTATATATGTCCACATTCGGACTTAGGGGAAAGaataa                                         <  1:355844/150‑1 (MQ=255)
                                                                                                                cTGGTTTGTGTTTGTGATATTTATTATGCGTATGCTTCAAAAACAAAATTATCTGCAACATGTTGAAATACTGTGCTTTTATGAATTTGATGCGTGTTTTTCTCCATAAATTATATATGTCCACATTCGGACTTAGGGGAAAGAATAAtt                                       <  2:1597276/150‑1 (MQ=255)
                                                                                                                 tGGTTTGTGTTTGTGATATTTATTATGCGTATGCTTCAAAAACAAAATTATCTGCAACATGTTGAAATACTGTGCTTTTATGAATTTGATGCGTGTTTTTCTCCATAAATTATATATGTCCACATTCGGACTTAGGGGAAAGAATAATTg                                      >  1:2282314/1‑150 (MQ=255)
                                                                                                                   gtttgtttttgtGATATTTATTATGCGTATGCTTTAAAAACAAAATTATCTGCAACATGTTGAAATACTGTGCTTTTATGAATTTGATGCGTGTTTTTCTCCATAAATTATATATGTCCACATTCGGACTTAGGGGAAAGAATAATTGaa                                    >  2:1938156/1‑150 (MQ=255)
                                                                                                                       gtgtttgtgATATTTATTATGCGTATGCTTCAAAAACAAAATTATCTGCAACATGTTGAAATACTGTGCTTTTATGAATTTGATGCGTGTTTTTCTCCATAAATTATATATGTCCACATTCGGACTTAGGGGAAAGAATAATTGAACCAt                                >  1:2063695/1‑150 (MQ=255)
                                                                                                                        tgtttgtgATATTTATTATGCGTATGCTTCAAAAACAAAATTATCTGCAACATGTTGAAATACTGTGCTTTTATGAATTTGATGCGTGTTTTTCTCCATAAATTATATATGTCCACATTCGGACTTAGGGGAAAGAATAATTGAACCAtt                               <  2:1321621/150‑1 (MQ=255)
                                                                                                                        tgtttgtgATATTTATTATGCGTATGCTTCAAAAACAAAATTATCTGCAACATGTTGAAATACTGTGCTTTTATGAATTTGATGCGTGTTTTTCTCCATAAATTATATATGTCCACATTCGGACTTAGGGGAAAGAATAATTGAACCAtt                               <  2:1322912/150‑1 (MQ=255)
                                                                                                                         ttttgtgATATTTATTATGCGTATGCTTTAAAAACAAAATTATCTGCAACATGTTGAAATACTGTGCTTTTATGAATTTGATGCGTGTTTTTCTCCATAAATTATATATGTCCACATTCGGACTTAGGGGAAAGAATAATTGAACCATTc                              <  2:1412294/149‑1 (MQ=255)
                                                                                                                          tttgtgATATTTATTATGCGTATGCTTTAAAAACAAAATTATCTGCAACATGTTGAAATACTGTGCTTTTATGAATTTGATGCGTGTTTTTCTCCATAAATTATATATGTCCACATTCGGACTTAGGGGAAAGAATAATTGAACCATTCg                             >  1:341392/1‑150 (MQ=255)
                                                                                                                            tgttATATTTATTATGCGTATTCTTTAAAAACAAAATTATCTGCAACATGTTGAAATACTTTGCTTTTATGAATTTTATGCGTGTTTTTATCAATATATTATATATGTCCACATTCGGACTTAGTGTAAAGTATAATTGATCCATTCGTc                           <  2:611954/150‑1 (MQ=255)
                                                                                                                            tgtgATATTTATTATGCGTATGCTTTAAAAACAAAATTATCTGCAACATGTTGAAATACTGTGCTTTTATGAATTTGATGCGTGTTTTTCTCCATAAATTATATATGTCCACATTCGGACTTAGGGGAAAGAATAATTGAACCATTCGTc                           <  1:1031860/150‑1 (MQ=255)
                                                                                                                             gtgATATTTATTATGCGTATGCTTCAAAAACAAAATTATCTGCAACATGTTGAAATACTGTGCTTTTATGAATTTGATGCGTGTTTTTCTCCATAAATTATATATGTCCACATTCGGACTTAGGGGAAAGAATAATTGAACCATTCGTCt                          <  2:1116400/150‑1 (MQ=255)
                                                                                                                              tgATATTTATTATGCGTATGCTTCAAAAACAAAATTATCTGCAACATGTTGAAATACTGTGCTTTTATGAATTTGATGCGTGTTTTTCTCCATAAATTATATATGTCCACATTCGGACTTAGGGGAAAGAATAATTGAACCATTCGTCTg                         >  1:1761378/1‑150 (MQ=255)
                                                                                                                               gATATTTATTATGCGTATGCTTTAAAAACAAAATTATCTGCAACATGTTGAAATACTGTGCTTTTATGAATTTGATGCGTGTTTTTCTCCATAAATTATATATGTCCACATTCGGACTTAGGGGAAAGAATAATTGAACCATTCGTCTGt                        <  2:4370771/150‑1 (MQ=255)
                                                                                                                                 tatttattATGCGTATGCTTCAAAAACAAAATTATCTGCAACATGTTGAAATACTGTGCTTTTATGAATTTGATGCGTGTTTTTCTCCATAAATTATATATGTCCACATTCGGACTTAGGGGAAAGAATAATTGAACCATTCGTCTGTaa                      >  2:1645911/1‑150 (MQ=255)
                                                                                                                                  atttattATGCGTATGCTTCAAAAACAAAATTATCTGCAACATGTTGAAATACTGTGCTTTTATGAATTTGATGCGTGTTTTTCTCCATAAATTATATATGTCCACATTCGGACTTAGGGGAAAGAATAATTGAACCATTCGTCTGTAAc                     <  2:3636712/150‑1 (MQ=255)
                                                                                                                                   tttattATGCGTATGCTTTAAAAACAAAATTATCTGCAACATGTTGAAATACTGTGCTTTTATGAATTTGATGCGTGTTTTTCTCCATAAATTATATATGTCCACATTCGGACTTAGGGGAAAGAATAATTGAACCATTCGTCTGTAACg                    <  2:3371809/150‑1 (MQ=255)
                                                                                                                                    ttattaTGCGTATGCTTCAAAAACAAAATTATCTGCAACATGTTGAAATACTGTGCTTTTATGAATTTGATGCGTGTTTTTCTCCATAAATTATATATGTCCACATTCGGACTTAGGGGAAAGAATAATTGAACCATTCGTCTGTAACgc                   >  2:2718726/1‑150 (MQ=255)
                                                                                                                                     tattatGCGTATGCTTCAAAAACAAAATTATCTGCAACATGTTGAAATACTGTGCTTTTATGAATTTGATGCGTGTTTTTCTCCATAAATTATATATGTCCACATTCGGACTTAGGGGAAAGAATAATTGAACCATTCGTCTGTAACgca                  <  1:3166484/150‑1 (MQ=255)
                                                                                                                                      attatGCGTATGCTTTAAAAACAAAATTATCTGCAACATGTTGAAATACTGTGCTTTTATGAATTTGATGCGTGTTTTTCTCCATAAATTATATATGTCCACATTCGGACTTAGGGGAAAGAATAATTGAACCATTCGTCTGTAACgcag                 <  1:686769/150‑1 (MQ=255)
                                                                                                                                      attatGCGTATGCTTTAAAAACAAAATTATCTGCAACATGTTGAAATACTGTGCTTTTATGAATTTGATGCGTGTTTTTCTCCATAAATTATATATGTCCACATTCGGACTTAGGGGAAAGAATAATTGAACCATTCGTCTGTAACgcag                 <  1:1863251/150‑1 (MQ=255)
                                                                                                                                       ttatGCGTATGCTTTAAAAACAAAATTATCTGCAACATGTTGAAATACTGTGCTTTTATGAATTTGATGCGTGTTTTTCTCCATAAATTATATATGTCCACATTCGGACTTAGGGGAAAGAATAATTGAACCATTCGTCTGTAACgcagc                >  1:1225043/1‑150 (MQ=255)
                                                                                                                                       ttatGCGTATGCTTCAAAAACAAAATTATCTGCAACATGTTGAAATACTGTGCTTTTATGAATTTGATGCGTGTTTTTCTCCATAAATTATATATGTCCACATTCGGACTTAGGGGAAAGAATAATTGAACCATTCGTCTGTAACgcagc                >  1:4303116/1‑150 (MQ=255)
                                                                                                                                        tatGCGTATGCTTTAAAAACAAAATTATCTGCAACATGTTGAAATACTGTGCTTTTATGAATTTGATGCGTGTTTTTCTCCATAAATTATATATGTCCACATTCGGACTTAGGGGAAAGAATAATTGAACCATTCGTCTGTAACgcagca               <  1:4374885/150‑1 (MQ=255)
                                                                                                                                        tatGCGTATGCTTCAAAAACAAAATTATCTGCAACATGTTGAAATACTGTGCTTTTATGAATTTGATGCGTGTTTTTCTCCATAAATTATATATGTCCACATTCGGACTTAGGGGAAAGAATAATTGAACCATTCGTCTGTAACgcagca               >  2:1259076/1‑150 (MQ=255)
                                                                                                                                         atGCGTATGCTTCAAAAACAAAATTATCTGCAACATGTTGAAATACTGTGCTTTTATGAATTTGATGCGTGTTTTTCTCCATAAATTATATATGTCCACATTCGGACTTAGGGGAAAGAATAATTGAACCATTCGTCTGTAACGCAGCAt              >  1:1098348/1‑150 (MQ=255)
                                                                                                                                             gTATGCTTTAAAAACAAAATTATCTGCAACATGTTGAAATACTGTGCTTTTATGAATTTGATGCGTGTTTTTCTCCATAAATTATATATGTCCACATTCGGACTTAGGGGAAAGAATAATTGAACCATTCGTCTGTAACGCAGCATAATc          >  2:1291342/1‑150 (MQ=255)
                                                                                                                                               aTGCTTTAAAAACAAAATTATCTGCAACATGTTGAAATACTGTGCTTTTATGAATTTGATGCGTGTTTTTCTCCATAAATTATATATGTCCTCATTCGGACTTAGGGGAAAGAATAATTGAACCATTCGTCTGTAACGCAGCATAATCGt        >  1:2220050/1‑150 (MQ=255)
                                                                                                                                                tGCTTCAAAAACAAAATTATCTGCAACATGTTGAAATACTGTGCTTTTATGAATTTGATGCGTGTTTTTCTCCATAAATTATATATGTCCACATTCGGACTTAGGGGAAAGAATAATTGAACCATTCGTCTGTAACGCAGCATAATCGtt       >  2:3601297/1‑150 (MQ=255)
                                                                                                                                                  cTTTAAAAACAAAATTATCTGCAACATGTTGAAATACTGTGCTTTTATGAATTTGATGCGTGTTTTTCTCCATAAATTATATATGTCCACATTCGGACTTAGGGGAAAGAATAATTGAACCATTCGTCTGTAACGCAGCATAATCGTTAg     <  2:2232186/150‑1 (MQ=255)
                                                                                                                                                     |                                                                                                                                                     
GAAAATATTTTTAATCTTTATTTATAGCTGTTGGTTATTATTTTTTGGAGTTTGGTTGCGCTGCTATAAATTGAATAATTAAAACTTTGTTGCATATTCATAGGATATTTATCTGGTTTGTGTTTGTGATATTTATTATGCGTATGCTTCAAAAACAAAATTATCTGCAACATGTTGAAATACTGTGCTTTTATGAATTTGATGCGTGTTTTTCTCCATAAATTATATATGTCCACATTCGGACTTAGGGGAAAGAATAATTGAACCATTCGTCTGTAACGCAGCATAATCGTTAGCGC  >  CP009273/385336‑385634

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A