Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F181 I0 R1 1262 323.1 10297870 97.5% 10040423 150.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP009273 1,798,834 G→A 27.6% pseudogene (1060/1476 nt) arpB → pseudogene, ankyrin repeats

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0092731,798,8340GA27.6% 457.7 / 212.0 243pseudogene (1060/1476 nt)arpBpseudogene, ankyrin repeats
Reads supporting (aligned to +/- strand):  ref base G (91/85);  new base A (39/28);  total (130/113)
Fisher's exact test for biased strand distribution p-value = 3.90e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 257 total aligned reads displayed.

CTAACGAAACACCTGGACTTTATATCTCCATGTTGTATGGATTCGATGAAATAATCGATATCTTTCTGAATGCATTAACCACTCCAATAGCACAAGAGCTTTTAAACAAAAAACTGGTGATGAGTATTTTAGCCATGAAAATACATGATGGTGAGCCAGGATTATACGCCGCAATGGAAAATAATCACCCTTTGTGTGTCACACGGTTCCTCTCTAAAATTAATGGCATCGCCTTTAAATACAAGTTGAGCAAAGCTAACATCATGGATTTATTAAAAGGAGCTACAGCACAGGGAA  >  CP009273/1798685‑1798981
                                                                                                                                                     |                                                                                                                                                   
 tAACGAAACACCTGGACTTTATATCTCCATGTTGTATGGATTCGATGAAATAATCGATATCTTTCTGAATGCATTAACCACTCCAATAGCACAAGAGCTTTTAAACAAAAAACTGGTGATGAGTATTTTAGCCATGAAAATACATGATgg                                                                                                                                                    <  2:594220/150‑1 (MQ=255)
   aCGAAACACCTGGACTTTATATCTCCATGTTGTATGGATTCGATGAAATAATCGATATCTTTCTGAATGCATTAACCACTCCAATAGCACAAGAGCTTTTAAACAAAAAACTGGTGATGAGTATTTTAGCCATGAAAATACATGATGGTg                                                                                                                                                  >  2:924465/1‑150 (MQ=255)
   aCGAAACACCTGGACTTTATATCTCCATGTTGTATGGATTCGATGAAATAATCGATATCTTTCTGAATGCATTAACCACTCCAATAGCACAAGAGCTTTTAAACAAAAAACTGGTGATGAGTATTTTAGCCATGAAAATACATGATGGTg                                                                                                                                                  >  1:3164515/1‑150 (MQ=255)
    cGAAACACCTGGACTTTATATCTCCATGTTGTATGGATTCGATGAAATAATCGATATCTTTCTGAATGCATTAACCTCTCCAATAGCACAAGAGCTTTTAAACAAAAAACTGGTGATGAGTATTTTAGCCATGAAAATACATGATGGTGa                                                                                                                                                 <  1:314124/150‑1 (MQ=255)
     gAAACACCTGGACTTTATATCTCCATGTTGTATGGATTCGATGAAATAATCGATATCTTTCTGAATGCATTAACCACTCCAATAGCACAAGAGCTTTTAAACAAAAAACTGGTGATGAGTATTTTAGCCATGAAAATACATGATGGTGAg                                                                                                                                                >  2:73475/1‑150 (MQ=255)
       aaCACCTGGACTTTATATCTCCATGTTGTATGGATTCGATGAAATAATCGATATCTTTCTGAATGCATTAACCACTCCAATAGCACAAGAGCTTTTAAACAAAAAACTGGTGATGAGTATTTTAGCCATGAAAATACATGATGGTGAGcc                                                                                                                                              >  2:4504596/1‑150 (MQ=255)
        acacCTGGACTTTATATCTCCATGTTGTATGGATTCGATGAAATAATCGATATCTTTCTGAATGCATTAACCACTCCAATAGCACAAGAGCTTTTAAACAAAAAACTGGTGATGAGTATTTTAGCCATGAAAATACATGATGGTGAGCCa                                                                                                                                             >  2:1131837/1‑150 (MQ=255)
        acacCTGGACTTTATATCTCCATGTTGTATGGATTCGATGAAATAATCGATATCTTTCTGAATGCATTAACCACTCCAATAGCACAAGAGCTTTTAAACAAAAAACTGGTGATGAGTATTTTAGCCATGAAAATACATGATGGTGAGCCa                                                                                                                                             <  2:439384/150‑1 (MQ=255)
        acacCTGGACTTTATATCTCCATGTTGTATGGATTCGATGAAATAATCGATATCTTTCTGAATGCATTAACCACTCCAATAGCACAAGAGCTTTTAAACAAAAAACTGGTGATGAGTATTTTAGCCATGAAAATACATGATGGTGAGCCa                                                                                                                                             >  2:1987070/1‑150 (MQ=255)
         cacCTGGACTTTATATCTCCATGTTGTATGGATTCGATGAAATAATCGATATCTTTCTGAATGCATTAACCACTCCAATAGCACAAGAGCTTTTAAACAAAAAACTGGTGATGAGTATTTTAGCCATGAAAATACATGATGGTGAGCCAg                                                                                                                                            >  2:3217658/1‑150 (MQ=255)
         cacCTGGACTTTATATCTCCATGTTGTATGGATTCGATGAAATAATCGATATCTTTCTGAATGCATTAACCACTCCAATAGCACAAGAGCTTTTAAACAAAAAACTGGTGATGAGTATTTTAGCCATGAAAATACATGATAGTGAGCCAg                                                                                                                                            >  2:476693/1‑150 (MQ=255)
               gACTTTATATCTCCATGTTGTATGGATTCGATGAAATAATCGATATCTTTCTGAATGCATTAACCACTCCAATAGCACAAGAGCTTTTAAACAAAAAACTGGTGATGAGTATTTTAGCCATGAAAATACATGATGGTGAGCCAGGATtat                                                                                                                                      <  2:4849781/150‑1 (MQ=255)
                 cTTTATATCTCCATGTTGTATGGATTCGATGAAATAATCGATATCTTTCTGAATGCATTAACCACTCCAATAGCACAAGAGCTTTTAAACAAAAAACTGGTGATGAGTATTTTAGCCATGAAAATACATGATGGTGAGCCAGGATTATAc                                                                                                                                    <  2:1507478/150‑1 (MQ=255)
                 cTTTATATCTCCATGTTGTATGGATTCGATGAAATAATCGATATCTTTCTGAATGCATTAACCACTCCAATAGCACAAGAGCTTTTAAACAAAAAACTGGTGATGAGTATTTTAGCCATGAAAATACATGATAGTGAGCCAGGATTATAc                                                                                                                                    >  1:3921048/1‑150 (MQ=255)
                  tttATATCTCCATGTTGTATGGATTCGATGAAATAATCGATATCTTTCTGAATGCATTAACCACTCCAATAGCACAAGAGCTTTTAAACAAAAAACTGGTGATGAGTATTTTAGCCATGAAAATACATGATGGTGAGCCAGGATTATAcg                                                                                                                                   >  2:1334988/1‑150 (MQ=255)
                    tataTCTCCATGTTGTATGGATTCGATGAAATAATCGATATCTTTCTGAATGCATTAACCACTCCAATAGCACAAGAGCTTTTAAACAAAAAACTGGTGATGAGTATTTTAGCCATGAAAATACATGATGGTGAGCCAGGATTATAcgcc                                                                                                                                 >  2:2144223/1‑150 (MQ=255)
                      tatCTCCATGTTGTATGGATTCGATGAAATAATCGATATCTTTCTGAATGCATTAACCACTCCAATAGCACAAGAGCTTTTAAACAAAAAACTGGTGATGAGTATTTTAGCCATGAAAATACATGATAGTGAGCCAGGATTATAcgccgc                                                                                                                               <  2:4970029/150‑1 (MQ=255)
                        tctcCATGTTGTATGGATTCGATGAAATAATCGATATCTTTCTGAATGCATTAACCACTCCAATAGCACAAGAGCTTTTAAACAAAAAACTGGTGATGAGTATTTTAGCCATGAAAATACATGATGGTGAGCCAGGATTATACGCCGCaa                                                                                                                             >  1:4395179/1‑150 (MQ=255)
                           ccATGTTGTATGGATTCGATGAAATAATCGATATCTTTCTGAATGCATTAACCACTCCAATAGCACAAGAGCTTTTAAACAAAAAACTGGTGATGAGTATTTTAGCCATGAAAATACATGATGGTGAGCCAGGATTATACGCCGCAATgg                                                                                                                          <  2:910950/150‑1 (MQ=255)
                             aTGTTGTATGGATTCGATGAAATAATCGATATCTTTCTGAATGCATTAACCACTCCAATAGCACAAGAGCTTTTAAACAAAAAACTGGTGATGAGTATTTTAGCCATGAAAATACATGATGGTGAGCCAGGATTATACGCCGCAATGGaa                                                                                                                        <  2:4150556/150‑1 (MQ=255)
                              tgttgtATGGATTCGATGAAATAATCGATATCTTTCTGAATGCATTAACCACTCCAATAGCACAAGAGCTTTTAAACAAAAAACTGGTGATGAGTATTTTAGCCATGAAAATACATGATGGTGAGCCAGGATTATACGCCGCAATGGaaa                                                                                                                       >  2:2084967/1‑150 (MQ=255)
                                  gtATGGATTCGATGAAATAATCGATATCTTTCTGAATGCATTAACCACTCCAATAGCACAAGAGCTTTTAAACAAAAAACTGGTGATGAGTATTTTAGCCATGAAAATACATGATGGTGAGCCAGGATTATACGCCGCAATGGAAaataa                                                                                                                   <  2:1705316/150‑1 (MQ=255)
                                      ggATTCGATGAAATAATCGATATCTTTCTGAATGCATTAACCACTCCAATAGCACAAGAGCTTTTAAACAAAAAACTGGTGATGAGTATTTTAGCCATGAAAATACATGATAGTGAGCCAGGATTATACGCCGCAATGGAAAATAATCAc                                                                                                               >  2:2382413/1‑150 (MQ=255)
                                        aTTCGATGAAATAATCGATATCTTTCTGAATGCATTAACCACTCCAATAGCACAAGAGCTTTTAAACAAAAAACTGGTGATGAGTATTTTAGCCATGAAAATACATGATGGTGAGCCAGGATTATACGCCGCAATGGAAAATAATCAccc                                                                                                             <  1:2528687/150‑1 (MQ=255)
                                               gAAATAATCGATATCTTTCTGAATGCATTAACCACTCCAATAGCACAAGAGCTTTTAAACAAAAAACTGGTGATGAGTATTTTAGCCATGAAAATACATGATGGTGAGCCAGGATTATACGCCGCAATGGAAAATAATCACCCTTtgtgt                                                                                                      <  2:2565053/150‑1 (MQ=255)
                                               gAAATAATCGATATCTTTCTGAATGCATTAACCACTCCAATAGCACAAGAGCTTTTAAACAAAAAACTGGTGATGAGTATTTTAGCCATGAAAATACATGATAGTGAGCCAGGATTATACGCCGCAATGGAAAATAATCACCCTTtgtgt                                                                                                      <  2:3584497/150‑1 (MQ=255)
                                                 aataatCGATATCTTTCTGAATGCATTAACCACTCCAATAGCACAAGAGCTTTTAAACAAAAAACTGGTGATGAGTATTTTAGCCATGAAAATACATGATGGTGAGCCAGGATTATACGCCGCAATGGAAAATAATCACCCTTTgtgtgt                                                                                                    >  1:4247413/1‑150 (MQ=255)
                                                  ataatCGATATCTTTCTGAATGCATTAACCACTCCAATAGCACAAGAGCTTTTAAACAAAAAACTGGTGATGAGTATTTTAGCCATGAAAATACATGATGGTGAGCCAGGATTATACGCCGCAATGGAAAATAATCACCCTTTGTGTGTc                                                                                                   <  2:4107573/150‑1 (MQ=255)
                                                  ataatCGATATCTTTCTGAATGCATTAACCACTCCAACAGCACAAGAGCTTTTAAACAAAAAACTGGTGATGAGTATTTTAGCCATGAAAATACATGATGGTGAGCCAGGATTATACGCCGCAATGGAAAATAATCACCCTTTGTGTGTc                                                                                                   <  1:2200554/150‑1 (MQ=255)
                                                   taatCGATATCTTTCTGAATGCATTAACCACTCCAATAGCACAAGAGCTTTTAAACAAAAAACTGGTGATGAGTATTTTAGCCATGAAAATACATGATGGTGAGCCAGGATTATACGCCGCAATGGACAATAATCACCCTTTGTGTGTca                                                                                                  >  2:1737757/1‑150 (MQ=255)
                                                    aatCGATATCTTTCTGAATGCATTAACCACTCCAATAGCACAAGAGCTTTTAAACAAAAAACTGGTGATGAGTATTTTAGCCATGAAAATACATGATGGTGAGCCAGGATTATACGCCGCAATGGAAAATAATCACCCTTTGTGTGTcac                                                                                                 >  1:86685/1‑150 (MQ=255)
                                                    aatCGATATCTTTCTGAATGCATTAACCACTCCAATAGCACAAGAGCTTTTAAACAAAAAACTGGTGATGAGTATTTTAGCCATGAAAATACATGATAGTGAGCCAGGATTATACGCCGCAATGGAAAATAATCACCCTTTGTGTGTcac                                                                                                 >  1:846443/1‑150 (MQ=255)
                                                      tCGATATCTTTCTGAATGCATTAACCACTCCAATAGCACAAGAGCTTTTAAACAAAAAACTGGTGATGAGTATTTTAGCCATGAAAATACATGATGGTGAGCCAGGATTATACGCCGCAATGGAAAATAATCACCCTTTGTGTGTCacac                                                                                               >  1:4452717/1‑150 (MQ=255)
                                                        gATATCTTTCTGAATGCATTAACCATTCCAATAGCACAAGAGCTTTTAAACAAAAAACTGGTGATGAGTATTTTAGCCATGAAAATACATGATGGTGAGCCAGGATTATACGCCGCAATGGAAAATAATCACCCTTTGTGTGTCACACgg                                                                                             >  1:1264939/1‑150 (MQ=255)
                                                        gATATCTTTCTGAATGCATTAACCACTCCAATAGCACAAGAGCTTTTAAACAAAAAACTGGTGATGAGTATTTTAGCCATGAAAATACATGATAGTGAGCCAGGATTATACGCCGCAATGGAAAATAATCACCCTTTGTGTGTCACACgg                                                                                             >  1:2151220/1‑150 (MQ=255)
                                                        gATATCTTTCTGAATGCATTAACCACTCCAATAGCACAAGAGCTTTTAAACAAAAAACTGGTGATGAGTATTTTAGCCATGAAAATACATGATAGTGAGCCAGGATTATACGCCGCAATGGAAAATAATCACCCTTTGTGTGTCACACgg                                                                                             >  1:4705141/1‑150 (MQ=255)
                                                          tatCTTTCTGAATGCATTAACCACTCCAATAGCACAAGAGCTTTTAAACAAAAAACTGGTGATGAGTATTTTAGCCATGAAAATACATGATGGTGAGCCAGGATTATACGCCGCAATGGAAAATAATCACCCTTTGTGTGTCACACGGtt                                                                                           >  2:307541/1‑150 (MQ=255)
                                                          tatCTTTCTGAATGCATTAACCACTCCAATAGCACAAGAGCTTTTAAACAAAAAACTGGTGATGAGTATTTTAGCCATGAAAATACATGATAGTGAGCCAGGATTATACGCCGCAATGGAAAATAATCACCCTTTGTGTGTCACACGGtt                                                                                           >  1:4784718/1‑150 (MQ=255)
                                                          tatCTTTCTGAATGCATTAACCACTCCAATAGCACAAGAGCTTTTAAACAAAAAACTGGTGATGAGTATTTTAGCCATGAAAATACATGATAGTGAGCCAGGATTATACGCCGCAATGGAAAATAATCACCCTTTGTGTGTCACACGGtt                                                                                           >  2:1282169/1‑150 (MQ=255)
                                                             cTTTCTGAATGCATTAACCACTCCAATAGCACAAGAGCTTTTAAACAAAAAACTGGTGATGAGTATTTTAGCCATGAAAATACATGATGGTGAGCCAGGATTATACGCCGCAATGGAAAATAATCACCCTTTGTGTGTCACACGGTTCct                                                                                        <  2:2555538/150‑1 (MQ=255)
                                                              tttCTGAATGCATTAACCACTCCAATAGCACAAGAGCTTTTAAACAAAAAACTGGTGATGAGTATTTTAGCCATGAAAATACATGATGGTGAGCCAGGATTATACGCCGCAATGGAAAATAATCACCCTTTGTGTGTCACACGGTTCctc                                                                                       <  1:1354178/150‑1 (MQ=255)
                                                                  tGAATGCATTAACCACTCCAATAGCACAAGAGCTTTTAAACAAAAAACTGGTGATGAGTATTTTAGCCATGAAAATACATGATGGTGAGCCAGGATTATACGCCGCAATGGAAAATAATCACCCTTTGTGTGTCACACGGTTCCTCTCTa                                                                                   <  1:3747732/150‑1 (MQ=255)
                                                                      tGCATTAACCACTCCAATAGCACAAGAGCTTTTAAACAAAAAACTGGTGATGAGTATTTTAGCCATGAAAATACATGATGGTGAGCCAGGATTATACGCCGCAATGGAAAATAATCACCCTTTGTGTGTCACACGGTTCCTCTCTAAAAt                                                                               >  2:1932076/1‑150 (MQ=255)
                                                                      tGCATTAACCACTCCAATAGCACAAGAGCTTTTAAACAAAAAACTGGTGATGAGTATTTTAGCCATGAAAATACATGATGGTGAGCCAGGATTATACGCCGCAATGGAAAATAATCACCCTTTGTGTGTCACACGGTTCCTCTCTAAAAt                                                                               >  1:1017819/1‑150 (MQ=255)
                                                                       gCATTAACCACTCCAATAGCACAAGAGCTTTTAAACAAAAAACTGGTGATGAGTATTTTAGCCATGAAAATACATGATGGTGAGCCAGGATTATACGCCGCAATGGAAAATAATCACCCTTTGTGTGTCACACGGTTCCTCTCTAAAAtt                                                                              >  2:4691340/1‑150 (MQ=255)
                                                                         aTTAACCACTCCAATAGCACAAGAGCTTTTAAACAAAAAACTGGTGATGAGTATTTTAGCCATGAAAATACATGATGGTGAGCCAGGATTATACGCCGCAATGGAAAATAATCACCCTTTGTGTGTCACACGGTTCCTCTCTAAAATTaa                                                                            >  1:1732580/1‑150 (MQ=255)
                                                                          ttAACCACTCCAATAGCACAAGAGCTTTTAAACAAAAAACTGGTGATGAGTATTTTAGCCATGAAAATACATGATGGTGAGCCAGGATTATACGCCGCAATGGAAAATAATCACCCTTTGTGTGTCACACGGTTCCTCTCTAAAATTAAt                                                                           <  1:1272274/150‑1 (MQ=255)
                                                                           tAACCACTCCAATAGCACAAGAGCTTTTAAACAAAAAACTGGTGATGAGTATTTTAGCCATGAAAATACATGATAGTGAGCCAGGATTATACGCCGCAATGGAAAATAATCACCCTTTGTGTGTCACACGGTTCCTCTCTAAAATTAATg                                                                          >  1:4628787/1‑150 (MQ=255)
                                                                            aaCCACTCCAATAGCACAAGAGCTTTTAAACAAAAAACTGGTGATGAGTATTTTAGCCATGAAAATACATGATGGTGAGCCAGGATTATACGCCGCAATGGAAAATAATCACCCTTTGTGTGTCACACGGTTCCTCTCTAAAATTAATgg                                                                         <  2:2171211/150‑1 (MQ=255)
                                                                               cACTCCAATAGCACAAGAGCTTTTAAACAAAAAACTGGTGATGAGTATTTTAGCCATGAAAATACATGATGGTGAGCCAGGATTATACGCCGCAATGGAAAATAATCACCCTTTGTGTGTCACACGGTTCCTCTCTAAAATTAATGGCAt                                                                      >  2:354396/1‑150 (MQ=255)
                                                                               cACTCCAATAGCACAAGAGCTTTTAAACAAAAAACTGGTGATGAGTATTTTAGCCATGAAAATACATGATGGTGAGCCAGGATTATACGCCGCAATGGAAAATAATCACCCTTTGTGTGTCACACGGTTCCTCTCTAAAATTAATGGCAt                                                                      <  1:722059/150‑1 (MQ=255)
                                                                               cACTCCAATAGCACAAGAGCTTTTAAACAAAAAACTGGTGATGAGTATTTTAGCCATGAAAATACATGATAGTGAGCCAGGATTATACGCCGCAATGGAAAATAATCACCCTTTGTGTGTCACACGGTTCCTCTCTAAAATTAATGGCAt                                                                      >  2:2674346/1‑150 (MQ=255)
                                                                                  tCCAATAGCACAAGAGCTTTTAAACAAAAAACTGGTGATGAGTATTTTAGCCATGAAAATACATGATGGTGAGCCAGGATTATACGCCGCAATGGAAAATAATCACCCTTTGTGTGTCACACGGTTCCTCTCTAAAATTAATGGCATCGc                                                                   >  1:3343906/1‑150 (MQ=255)
                                                                                  tCCAATAGCACAAGAGCTTTTAAACAAAAAACTGGTGATGAGTATTTTAGCCATGAAAATACATGATAGTGAGCCAGGATTATACGCCGCAATGGAAAATAATCACCCTTTGTGTGTCACACGGTTCCTCTCTAAAATTAATGGCATCGc                                                                   <  2:5008507/150‑1 (MQ=255)
                                                                                      aTAGCACAAGAGCTTTTAAACAAAAAACTGGTGATGAGTATTTTAGCCATGAAAATACATGATGGTGAGCCAGGATTATACGCCGCAATGGAAAATAATCACCCTTTGTGTGTCACACGGTTCCTCTCTAAAATTAATGGCATCGCCttt                                                               >  1:3655058/1‑150 (MQ=255)
                                                                                        aGCACAAGAGCTTTTAAACAAAAAACTGGTGATGAGTATTTTAGCCATGAAAATACATGATGGTGAGCCAGGATTATACGCCGCAATGGAAAATAATCACCCTTTGTGTGTCACACGGTTCCTCTCTAAAATTAATGGCATCGCCTTTaa                                                             >  1:5040217/1‑150 (MQ=255)
                                                                                        aGCACAAGAGCTTTTAAACAAAAAACTGGTGATGAGTATTTTAGCCATGAAAATACATGATAGTGAGCCAGGATTATACGCCGCAATGGAAAATAATCACCCTTTGTGTGTCACACGGTTCCTCTCTAAAATTAATGGCATCGCCTTTaa                                                             >  1:1994396/1‑150 (MQ=255)
                                                                                         gCACAAGAGCTTTTAAACAAAAAACTGGTGATGAGTATTTTAGCCATGAAAATACATGATAGTGAGCCAGGATTATACGCCGCAATGGAAAATAATCACCCTTTGTGTGTCACACGGTTCCTCTCTAAAATTAATGGCATCGCCTTTaaa                                                            >  1:1712197/1‑150 (MQ=255)
                                                                                           acaAGAGCTTTTAAACAAAAAACTGGTGATGAGTATTTTAGCCATGAAAATACATGATGGTGAGCCAGGATTATACGCCGCAATGGAAAATAATCACCCTTTGTGTGTCACACGGTTCCTCTCTAAAATTAATGGCATCGCCTTTAAATa                                                          >  2:1850611/1‑150 (MQ=255)
                                                                                             aaGAGCTTTTAAACAAAAAACTGGTGATGAGTATTTTAGCCATGAAAATACATGATGGTGAGCCAGGATTATACGCCGCAATGGAAAATAATCACCCTTTGTGTGTCACACGGTTCCTCTCTAAAATTAATGGCATCGCCTTTAAATACa                                                        <  2:2813507/150‑1 (MQ=255)
                                                                                             aaGAGCTTTTAAACAAAAAACTGGTGATGAGTATTTTAGCCATGAAAATACATGATGGTGAGCCAGGATTATACGCCGCAATGGAAAATAATCACCCTTTGTGTGTCACACGGTTCCTCTCTAAAATTAATGGCATCGCCTTTAAATACa                                                        <  1:2899699/150‑1 (MQ=255)
                                                                                              agagCTTTTAAACAAAAAACTGGTGATGAGTATTTTAGCCATGAAAATACATGATAGTGAGCCAGGATTATACGCCGCAATGGAAAATAATCACCCTTTGTGTGTCACACGGTTCCTCTCTAAAATTAATGGCATCGCCTTTAAATACaa                                                       <  2:195914/150‑1 (MQ=255)
                                                                                                agCTTTTAAACAAAAAACTGGTGATGAGTATTTTAGCCATGAAAATACATGATGGTGAGCCAGGATTATACGCCGCAATGGAAAATAATCACCCTTTGTGTGTCACACGGTTCCTCTCTAAAATTAATGGCATCGCCTTTAAATACAAGt                                                     <  1:3082446/150‑1 (MQ=255)
                                                                                                agCTTTTAAACAAAAAACTGGTGATGAGTATTTTAGCCATGAAAATACATCATGGTGAGACAGGATTATACGCCGCAATGGAAAATAATCACCCTTTGTGTGTCACACGGTTCCTCTCTAAAATTAATGGCATCGCCTTTAAATACaatt                                                     >  1:478627/1‑148 (MQ=255)
                                                                                                  cTTTTAAACAAAAAACTGGTGATGAGTATTTTAGCCATGAAAATACATGATGGTGAGCCAGGATTATACGCCGCAATGGAAAATAATCACCCTTTGTGTGTCACACGGTTCCTCTCTAAAATTAATGGCATCGCCTTTAAATACAAGTTg                                                   >  1:2783047/1‑150 (MQ=255)
                                                                                                           aaaaaaCTGGTGATGAGTATTTTAGCCATGAAAATACATGATGGTGAGCCAGGATTATACGCCGCAATGGAAAATAATCACCCTTTGTGTGTCACACGGTTCCTCTCTAAAATTAATGGCATCGCCTTTAAATACAAGTTGAGCAAAGCt                                          >  2:2902998/1‑150 (MQ=255)
                                                                                                           aaaaaaCTGGTGATGAGTATTTTAGCCATGAAAATACATGATGGTGAGCCAGGATTATACGCCGCAATGGAAAATAATCACCCTTTGTGTGTCACACGGTTCCTCTCTAAAATTAATGGCATCGCCTTTAAATACAAGTTGAGCAAAGCt                                          >  2:2298258/1‑150 (MQ=255)
                                                                                                           aaaaaaCTGGTGATGAGTATTTTAGCCATGAAAATACATGATGGTGAGCCAGGATTATACGCCGCAATGGAAAATAATCACCCTTTGTGTGTCACACGGTTCCTCTCTAAAATTAATGGCATCGCCTTTAAATACAAGTTGAGCAAAGCt                                          >  1:4002805/1‑150 (MQ=255)
                                                                                                            aaaaaCTGGTGATGAGTATTTTAGCCATGAAAATACATGATGGTGAGCCAGGATTATACGCCGCAATGGAAAATAATCACCCTTTGTGTGTCACACGGTTCCTCTCTAAAATTAATGGCATCGCCTTTAAATACAAGTTGAGCAAAGCTa                                         <  1:2939480/150‑1 (MQ=255)
                                                                                                               aaCTGGTGATGAGTATTTTAGCCATGAAAATACATGATGGTGAGCCAGGATTATACGCCGCAATGGAAAATAATCACCCTTTGTGTGTCACACGGTTCCTCTCTAAAATTAATGGCATCGCCTTTAAATTCAAGTTGAGCAAAGCTAAca                                      <  1:4890553/150‑1 (MQ=255)
                                                                                                               aaCTGGTGATGAGTATTTTAGCCATGAAAATACATGATAGTGAGCCAGGATTATACGCCGCAATGGAAAATAATCACCCTTTGTGTGTCACACGGTTCCTCTCTAAAATTAATGGCATCGCCTTTAAATACAAGTTGAGCAAAGCTAAca                                      >  1:556716/1‑150 (MQ=255)
                                                                                                               aaCTGGTGATGAGTATTTTAGCCATGAAAATACATGATAGTGAGCCAGGATTATACGCCGCAATGGAAAATAATCACCCTTTGTGTGTCACACGGTTCCTCTCTAAAATTAATGGCATCGCCTTTAAATACAAGTTGAGCAAAGCTAAca                                      >  2:3352449/1‑150 (MQ=255)
                                                                                                                aCTGGTGATGAGTTTTTTATCAATGAAAATACATGATGGTGAGCCAGGATTATACGCCGCAATGGAAAATAATCAACCTTTGTGTGTCACACGGTTCCTCTCTAAAATTAATGGCATCGCCTTTAAATACAAGTTGAGCAAAGCTAAcat                                     <  1:3436625/150‑1 (MQ=255)
                                                                                                                  tGGTGATGAGTATTTTAGCCATGAAAATACATGATGGTGAGCCAGGATTATACGCCGCAATGGAAAATAATCACCCTTTGTGTGTCACACGGTTCCTCTCTAAAATTAATGGCATCGCCTTTAAATACAAGTTGAGCAAAGCTAAcatca                                   >  1:2128255/1‑150 (MQ=255)
                                                                                                                   ggTGATGAGTATTTTAGCCATGAAAATACATGATAGTGAGCCAGGATTATACGCCGCAATGGAAAATAATCACCCTTTGTGTGTCACACGGTTCCTCTCTAAAATTAATGGCATCGCCTTTAAATACAAGTTGAGCAAAGCTAAcatcat                                  >  2:2404309/1‑150 (MQ=255)
                                                                                                                      gatgaGTATTTTAGCCATGAAAATACATGATGGTGAGCCAGGATTATACGCCGCAATGGAAAATAATCACCCTTTGTGTGTCACACGGTTCCTCTCTAAAATTAATGGCATCGCCTTTAAATACAAGTTGAGCAAAGCTAACATCATGGa                               <  1:1455130/150‑1 (MQ=255)
                                                                                                                        tgaGTATTTTAGCCATGAAAATACATGATGGTGAGCCAGGATTATACGCCGCAATGGAAAATAATCACCCTTTGTGTGTCACACGGTTCCTCTCTAAAATTAATGGCATCGCCTTTAAATACAAGTTGAGCAAAGCTAACATCATGGAtt                             <  1:2224918/150‑1 (MQ=255)
                                                                                                                         gaGTATTTTAGCCATGAAAATACATGATAGTGAGCCAGGATTATACGCCGCAATGGAAAATAATCACCCTTTGTGTGTCACACGGTTCCTCTCTAAAATTAATGGCATCGCCTTTAAATACAAGTTGAGCAAAGCTAACATCATGGAttt                            >  2:3788416/1‑150 (MQ=255)
                                                                                                                           gTATTTTAGCCATGAAAATACATGATAGTGAGCCAGGATTATACGCCGCAATGGAAAATAATCACCCTTTGTGTGTCACACGGTTCCTCTCTAAAATTAATGGCATCGCCTTTAAATACAAGTTGAGCAAAGCTAACATCATGGATttat                          <  2:1226102/150‑1 (MQ=255)
                                                                                                                             aTTTTAGCCATGAAAATACATGATAGTGAGCCAGGATTATACGCCGCAATGGAAAATAATCACCCTTTGTGTGTCACACGGTTCCTCTCTAAAATTAATGGCATCGCCTTTAAATACAAGTTGAGCAAAGCTAACATCATGGATttatta                        <  1:3485916/150‑1 (MQ=255)
                                                                                                                              ttttAGCCATGAAAATACATGATGGTGAGCCAGGATTATACGCCGCAATGGAAAATAATCACCCTTTGTGTGTCACACGGTTCCTCTCTAAAATTAATGGCATCGCCTTTAAATACAAGTTGAGCAAAGCTAACATCATGGATTTATTaa                       >  1:4125386/1‑150 (MQ=255)
                                                                                                                               tttAGCCATGAAAATACATGATGGTGAGCCAGGATTATACGCCGCAATGGAAAATAATCACCCTTTGTGTGTCACACGGTTCCTCTCTAAAATTAATGGCATCGCCTTTAAATACAAGTTGAGCAAAGCTAACATCATGGATTTATTaaa                      <  2:3893048/150‑1 (MQ=255)
                                                                                                                               tttAGCCATGAAAATACATGATGGTGAGCCAGGATTATACGCCGCAATGGAAAATAATCACCCTTTGTGTGTCACACGGTTCCTCTCTAAAATTAATGGCATCGCCTTTAAATACAAGTTGAGCAAAGCTAACATCATGGATTTATTaaa                      >  2:688474/1‑150 (MQ=255)
                                                                                                                                   gCCATGAAAATACATGATGGTGAGCCAGGATTATACGCCGCAATGGAAAATAATCACCCTTTGTGTGTCACACGGTTCCTCTCTAAAATTAATGGCATCGCCTTTAAATACAAGTTGAGCAAAGCTAACATCATGGATTTATTAAAAGGa                  <  2:2951262/150‑1 (MQ=255)
                                                                                                                                   gCCATGAAAATACATGATAGTGAGCCAGGATTATACGCCGCAATGGAAAATAATCACCCTTTGTGTGTCACACGGTTCCTCTCTAAAATTAATGGCATCGCCTTTAAATACAAGTTGAGCAAAGCTAACATCATGGATTTATTAAAAGGa                  <  2:1020248/150‑1 (MQ=255)
                                                                                                                                    ccATGAAAATACATGATGGTGAGCCAGGATTATACGCCGCAATGGAAAATAATCACCCTTTGTGTGTCACACGGTTCCTCTCTAAAATTAATGGCATCGCCTTTAAATACAAGTTGAGCAAAGCTAACATCATGGATTTATTAAAAGGAg                 <  1:924465/150‑1 (MQ=255)
                                                                                                                                     cATGAAAATACATGATAGTGAGCCAGGATTATACGCCGCAATGGAAAATAATCACCCTTTGTGTGTCACACGGTTCCTCTCTAAAATTAATGGCATCGCCTTTAAATACAAGTTGAGCAAAGCTAACATCATGGATTTATTAAAAGGAGc                <  2:1889094/150‑1 (MQ=255)
                                                                                                                                      aTGAAAATACATGATGGTGAGCCAGGATTATACGCCGCAATGGAAAATAATCACCCTTTGTGTGTCACACGGTTCCTCTCTAAAATTAATGGCATCGCCTTTAAATACAAGTTGAGCAAAGCTAACATCATGGATTTATTAAAAGGAGCt               >  2:1638577/1‑150 (MQ=255)
                                                                                                                                       tGAAAATACATGATGGTGAGCCAGGATTATACGCCGCAATGGAAAATAATCACCCTTTGTGTGTCACACGGTTCCTCTCTAAAATTAATGGCATCGCCTTTAAATACAAGTTGAGCAAAGCTAACATCATGGATTTATTAAAAGGAGCTa              >  1:4563841/1‑150 (MQ=255)
                                                                                                                                       tGAAAATACATGATGGTGAGCCAGGATTATACGCCGCAATGGAAAATAATCACCCTTTGTGTGTCACACGGTTCCTCTCTAAAATTAATGGCATCGCCTTTAAATACAAGTTGAGCAAAGCTAACATCATGGATTTATTAAAAGGAGCTa              <  1:733438/150‑1 (MQ=255)
                                                                                                                                         aaaaTACATGATGGTGAGCCAGGATTATACGCCGCAATGGAAAATAATCACCCTTTGTGTGTCACACGGTTCCTCTCTAAAATTAATGGCATCGCCTTTAAATACAAGTTGAGCAAAGCTAACATCATGGATTTATTAAAAGGAGCTACa            <  1:498629/150‑1 (MQ=255)
                                                                                                                                         aaaaTACATGATGGTGAGCCAGGATTATACGCCGCAATGGAAAATAATCACCCTTTGTGTGTCACACGGTTCCTCTCTAAAATTAATGGCATCGCCTTTAAATACAAGTTGAGCAAAGCTAACATCATGGATTTATTAAAAGGAGCTACa            >  1:5126978/1‑150 (MQ=255)
                                                                                                                                          aaaTACATGATGGTGAGCCAGGATTATACGCCGCAATGGAAAATAATCACCCTTTGTGTGTCACACGGTTCCTCTCTAAAATTAATGGCATCGCCTTTAAATACAAGTTGAGCAAAGCTAACATCATGGATTTATTAAAAGGAGCTACAg           <  1:1070365/150‑1 (MQ=255)
                                                                                                                                          aaaTACATGATGGTGAGCCAGGATTATACGCCGCAATGGAAAATAATCACCCTTTGTGTGTCACACGGTTCCTCTCTAAAATTAATGGCATCGCCTTTAAATACAAGTTGAGCAAAGCTAACATCATGGATTTATTAAAAGGAGCTAAAg           >  2:179566/1‑150 (MQ=255)
                                                                                                                                           aaTACATGATGGTGAGCCAGGATTATACGCCGCAATGGAAAATAATCACCCTTTGTGTGTCACACGGTTCCTCTCTAAAATTAATGGCATCGCCTTTAAATACAAGTTGAGCAAAGCTAACATCATGGATTTATTAAAAGGAGCTACAGc          >  1:4251927/1‑150 (MQ=255)
                                                                                                                                            aTACATGATGGTGAGCCAGGATTATACGCCGCAATGGAAAATAATCACCCTTTGTGTGTCACACGGTTCCTCTCTAAAATTAATGGCATCGCCTTTAAATACAAGTTGAGCAAAGCTAACATCATGGATTTATTAAAAGGAGCTACAGca         <  2:4588306/150‑1 (MQ=255)
                                                                                                                                                atgatgGTGAGCCAGGATTATACGCCGCAATGGAAAATAATCACCCTTTGTGTGTCACACGGTTCCTCTCTAAAATTAATGGCATCGCCTTTAAATACAAGTTGAGCAAAGCTAACATCATGGATTTATTAAAAGGAGCTACAGCACAgg     <  1:3229371/150‑1 (MQ=255)
                                                                                                                                                atgatgGTGAGCCAGGATTATACGCCGCAATGGAAAATAATCACCCTTTGTGTGTCACACGGTTCCTCTCTAAAATTAATGGCATCGCCATTAAATACAAGTTGAGCAAAGCTAACATCATGGATTTATTAAAAGGAGCTACAGCACAgg     <  2:4452649/150‑1 (MQ=255)
                                                                                                                                                   atgGTGAGCCAGGATTATACGCCGCAATGGAAAATAATCACCCTTTGTGTGTCACACGGTTCCTCTCTAAAATTAATGGCATCGCCTTTAAATACAAGTTGAGCAAAGCTAACATCATGGATTTATTAAAAGGAGCTACAGCACAGGGaa  >  1:2413804/1‑150 (MQ=255)
                                                                                                                                                   atgGTGAGCCAGGATTATACGCCGCAATGGAAAATAATCACCCTTTGTGTGTCACACGGTTCCTCTCTAAAATTAATGGCATCGCCTTTAAATACAAGTTGAGCAAAGCTAACATCATGGATTTATTAAAAGGAGCTACAGCACAGGGaa  <  2:2250047/150‑1 (MQ=255)
                                                                                                                                                     |                                                                                                                                                   
CTAACGAAACACCTGGACTTTATATCTCCATGTTGTATGGATTCGATGAAATAATCGATATCTTTCTGAATGCATTAACCACTCCAATAGCACAAGAGCTTTTAAACAAAAAACTGGTGATGAGTATTTTAGCCATGAAAATACATGATGGTGAGCCAGGATTATACGCCGCAATGGAAAATAATCACCCTTTGTGTGTCACACGGTTCCTCTCTAAAATTAATGGCATCGCCTTTAAATACAAGTTGAGCAAAGCTAACATCATGGATTTATTAAAAGGAGCTACAGCACAGGGAA  >  CP009273/1798685‑1798981

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A