Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F159 I0 R1	879	305.9	9588012	96.6%	9262019	150.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
RA	CP009273	1,798,834	G→A	34.8%	pseudogene (1060/1476 nt)	arpB →	pseudogene, ankyrin repeats

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP009273	1,798,834	0	G	A	34.8%	261.7 / 215.9	204	pseudogene (1060/1476 nt)	arpB	pseudogene, ankyrin repeats
Reads supporting (aligned to +/- strand): ref base G (72/61); new base A (33/38); total (105/99)
Fisher's exact test for biased strand distribution p-value = 3.08e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.46e-01

Only 100 of 212 total aligned reads displayed.

CTAACGAAACACCTGGACTTTATATCTCCATGTTGTATGGATTCGATGAAATAATCGATATCTTTCTGAATGCATTAACCACTCCAATAGCACAAGAGCTTTTAAACAAAAAACTGGTGATGAGTATTTTAGCCATGAAAATACATGATGGTGAGCCAGGATTATACGCCGCAATGGAAAATAATCACCCTTTGTGTGTCACACGGTTCCTCTCTAAAATTAATGGCATCGCCTTTAAATACAAGTTGAGCAAAGCTAACATCATGGATTTATTAAAAGGAGCTACAGCACAGGGAACC  >  CP009273/1798685‑1798983

cTAACGAAACACCTGGACTTTATATCTCCATGTTGTATGGATTCGATGAAATAATCGATATCTTTCTGAATGCATTAACCACTCCAATAGCACAAGAGCTTTTAAACAAAAAACTGGTGATGAGTATTTTAGCCATGAAAATACatgatg                                                                                                                                                       >  2:4129495/1‑150 (MQ=255)

        acacCTGTACTTTATATCACCATGTTGTTTGTTTTCGATGAAATAATCGATATCTTTCTGAATTAATTAACCACTCCAATAGCACAAGAGCTTTTAAACAAAAAACTGGTGATGAGTATTTTATCCATGAAAATACATGATAGTGAGCCa                                                                                                                                               <  1:976823/150‑1 (MQ=255)

         cacCTGGACTTTATATCTCCATGTTGTATGGATTCGATGAAATAATCGATATCTTTCTGAATGCATTAACCACTCCAATAGCACAAGAGCTTTTAAACAAAAAACTGGTGATGAGTATTTTAGCCATGAAAATACATGATGGTGAGCCAg                                                                                                                                              >  2:3321953/1‑150 (MQ=255)

          acCTGGACTTTATATCTCCATGTTGTATGGATTCGATGAAATAATCGATATCTTTCTGAATGCATTAACCACTCCAATAGCACAAGAGCTTTTAAACAAAAAACTGGTGATGAGTATTTTAGCCATGAAAATACATGATAGTGAGCCAgg                                                                                                                                             >  1:4618245/1‑150 (MQ=255)

                 cTTTATATCTCCATGTTGTATGGATTCGATGAAATAATCGATATCTTTCTGAATGCATTAACCACTCCAATAGCACAAGAGCTTTTAAACAAAAAACTGGTGATGAGTATTTTAGCCATGAAAATACATGATAGTGAGCCAGGATTATAc                                                                                                                                      <  2:2419620/150‑1 (MQ=255)

                 cTTTATATCTCCATGTTGTATGGATTCGATGAAATAATCGATATCTTTCTGAATGCATTAACCACTCCAATAGCACAAGAGCTTTTAAACAAAAAACTGGTGATGAGTATTTTAGCCATGAAAATAAATGATGGTGAGCCAGGATTATAc                                                                                                                                      >  2:306142/1‑150 (MQ=255)

                    tataTCTCCATGTTGTATGGATTCGATGAAATAATCGATATCTTTCTGAATGCATTAACCACTCCAATAGCACAAGAGCTTTTAAACAAAAAACTGGTGATGAGTATTTTAGCCATGAAAATACATGATAGTGAGCCAGGATTATActca                                                                                                                                   >  2:4304043/1‑147 (MQ=255)

                     atatCTCCATGTTGTATGGATTCGATGAAATAATCGATATCTTTCTGAATGCATTAACCACTCCAATAGCACAAGAGCTTTTAAACAAAAAACTGGTGATGAGTATTTTAGCCATGAAAATACATGATAGTGAGCCAGGATTATAcgccg                                                                                                                                  >  1:4638296/1‑150 (MQ=255)

                      tatCTCCATGTTGTATGGATTCGATGAAATAATCGATATCTTTCTTAATGCATTAACCACTCCAATAGCACAAGAGCTTTTAAACAAAAAACTGGTGATGAGTATTTTAGCCATGAAAATACATGATGGTGAGCCAGGATTATActccgc                                                                                                                                 >  2:3849053/1‑150 (MQ=255)

                      tatCTCCATGTTGTATGGATTCGATGAAATAATCGATATCTTTCTGAATGCATTAACCACTCCAATAGCACAAGAGCTTTTAAACAAAAAACTGGTGATGAGTATTTTAGCCATGAAAATACATGATGGTGAGCCAGGATTATAcgccgc                                                                                                                                 >  1:4622998/1‑150 (MQ=255)

                       atCTCCATGTTGTATGGATTCGATGAAATAATCGATATCTTTCTGAATGCATTAACCACTCCAATAGCACAAGAGCTTTTAAACAAAAAACTGGTGATGAGTATTTTAGCCATGAAAATACATGATAGTGAGCCAGGATTATACGCCGCa                                                                                                                                >  2:2323013/1‑150 (MQ=255)

                           ccATGTTGTATGGATTCGATGAAATAATCGATATCTTTCTGAATGCATTAACCACTCCAATAGCACAAGAGCTTTTAAACAAAAAACTGGTGATGAGTATTTTAGCCATGAAAATACATGATGGTGAGCCAGGATTATACTCCGCAATgg                                                                                                                            >  1:491388/1‑150 (MQ=255)

                           ccATGTTGTATGGATTCGATGAAATAATCGATATCTTTCTGAATGCATTAACCACTCCAATAGCACAAGAGCTTTTAAACAAAAAACTGGTGATGAGTATTTTAGCCATGAAAATACATGATAGTGAGCCAGGATTATACGCCGCAATgg                                                                                                                            >  1:4102868/1‑150 (MQ=255)

                           ccATGTTGTATGGATTCGATGAAATAATCGATATCTTTCTGAATGCATTAACCACTCCAATAGCACAAGAGCTTTTAAACAAAAAACTGGTGATGAGTATTTTAGCCATGAAAATACATGATAGTGAGCCAGGATTATACGCCGCAATgg                                                                                                                            >  1:2675315/1‑150 (MQ=255)

                              tgttgtATGGATTCGATGAAATAATCGATATCTTTCTGAATGCATTAACCACTCCAATAGCACAAGAGCTTTTAAACAAAAAACTGGTGATGAGTATTTTAGCCATGAAAATACATGATGGTGAGCCAGGATTATACGCCGCAATGGaaa                                                                                                                         <  1:237443/150‑1 (MQ=255)

                               gttgtATGGATTCGATGAAATAATCGATATCTTTCTGAATGCATTAACCACTCCAATAGCACAAGAGCTTTTAAACAAAAAACTGGTGATGAGTATTTTAGCCATGAAAATACATGATGGTGAGCCAGGATTATACGCCGCAATGGaaaa                                                                                                                        >  1:3228938/1‑150 (MQ=255)

                               gttgtATGGATTCGATGAAATAATCGATATCTTTCTGAATGCATTAACCACTCCAATAGCACAAGAGCTTTTAAACAAAAAACTGGTGATGAGTATTTTAGCCATGAAAATACATGATGGTGAGCCAGGATTATACGCCGCAATGGaaaa                                                                                                                        <  2:1046416/150‑1 (MQ=255)

                                ttgtATGGATTCGATGAAATAATCGATATCTTTCTGAATGCATTAACCACTCCAATAGCACAAGAGCTTTTAAACAAAAAACTGGTGATGAGTATTTTAGCCATGAAAATACATGATGGTGAGCCAGGATTATACGCCGCAATGGAAaat                                                                                                                       <  2:4483038/150‑1 (MQ=255)

                                   tATGGATTCGATGAAATAATCGATATCTTTCTGAATGCATTAACCACTCCAATAGCACAAGAGCTTTTAAACAAAAAACTGGTGATGAGTATTTTAGCCATGAAAATACATGATGGTGAGCCAGGATTATACGCCGCAATGGAAaataat                                                                                                                    <  2:3606163/150‑1 (MQ=255)

                                      ggATTCGATGAAATAATCGATATCTTTCTGAATGCATTAACCACTCCAATAGCACAAGAGCTTTTAAACAAAAAACTGGTGATGAGTATTTTAGCCATGAAAATACATGATAGTGAGCCAGGATTATACGCCGCAATGGAAAATAATCAc                                                                                                                 <  2:613434/150‑1 (MQ=255)

                                      ggATTCGATGAAATAATCGATATCTTTCTGAATGCATTAACCACTCCAATAGCACAAGAGCTTTTAAACAAAAAACTGGTGATGAGTATTTTAGCCATGAAAATACATGATAGTGAGCCAGGATTATACGCCGCAATGGAAAATAATCAc                                                                                                                 <  2:613529/150‑1 (MQ=255)

                                       gATTCGATGAAATAATCGATATCTTTCTGAATGCATTAACCACTCCAATAGCACAAGAGCTTTTAAACAAAAAACTGGTGATGAGTATTTTAGCCATGAAAATACATGATGGTGAGCCAGGATTATACGCCGCAATGGAAAATAATCAcc                                                                                                                <  2:244998/150‑1 (MQ=255)

                                            gATTAAATAATCGATATCTTTCTTAATGCATTAACCACTCCAATAGCACAAGAGCTTTTAAACAAAAAACTGGTGATGAGTATTTTAGCCATGAAAATACATGATGGTGAGCCAGGATTATACGCCGCAATGGAAAATAATCACCCTTtg                                                                                                           <  2:4707193/150‑1 (MQ=255)

                                              tGAAATAATCGATATCTTTCTGAATGCATTAACCACTCCAATAGCACAAGAGCTTTTAAACAAAAAACTGGTGATGAGTATTTTAGCCATGAAAATACATGATGGTGAGCCAGGATTATACGCCGCAATGGAAAATAATCACCCTTtgtg                                                                                                         >  2:1862795/1‑150 (MQ=255)

                                                 aataatCGATATCTTTCTGAATGCATTAACCACTCCAATAGCACAAGAGCTTTTAAACAAAAAACTGGTGATGAGTATTTTAGCCATGAAAATACATGATGGTGAGCCAGGATTATACGCCGCAATGGAAAATAATCACCCTTTgtgtgt                                                                                                      <  1:1246357/150‑1 (MQ=255)

                                                 aataatCGATATCTTTCTGAATGCATTAACCACTCCAATAGCACAAGAGCTTTTAAACAAAAAACTGGTGATGAGTATTTTAGCCATGAAAATACATGATGGTGAGCCAGGATTATACGCCGCAATGGAAAATAATCACCCTTTgtgtgt                                                                                                      >  1:3879802/1‑150 (MQ=255)

                                                   taatCGATATCTTTCTGAATGCATTAACCACTCCAATAGCACAAGAGCTTTTAAACAAAAAACTGGTGATGAGTATTTTAGCCATGAAAATACATGATGGTGAGCCAGGATTATACGCCGCAATGGAAAATAATCACCCTTTGTGTGTca                                                                                                    >  1:2567484/1‑150 (MQ=255)

                                                    aatCGATATCTTTCTGAATGCATTAACCACTCCAATAGCACAAGAGCTTTTAAACAAAAAACTGGTGATGAGTATTTTAGCCATGAAAATACATGATGGTGAGCCAGGATTATACGCCGCAATGGAAAATAATCACCCTTTGTGTGTcac                                                                                                   >  1:3921673/1‑150 (MQ=255)

                                                     atCGATATCTTTCTGAATGCATTAACCACTCCAATAGCACAAGAGCTTTTAAACAAAAAACTGGTGATGAGTATTTTAGCCATGAAAATACATGATAGTGAGCCAGGATTATACGCCGCAATGGAAAATAATCACCCTTTGTGTGTcaca                                                                                                  <  2:3347730/150‑1 (MQ=255)

                                                          tatCTTTCTGAATGCATTAACCACTCCAATAGCACAAGAGCTTTTAAACAAAAAACTGGTGATGAGTATTTTAGCCATGAAAATACATGATGGTGAGCCAGGATTATACGCCGCAATGGAAAATAATCACCCTTTGTGTGTCACACGGtt                                                                                             >  2:4237936/1‑150 (MQ=255)

                                                             cTTTCTTAATGCATTAACCACTCCAATAGCACAAGAGCTTTTAAACAAAAAACTGGTGATGAGTATTTTAGCCATGAAAATACATGATGGTGAGCCAGGATTATACGCCGCAATGGAAAATAATCACCCTTTGTGTGTCACACGGTTCct                                                                                          <  1:1606795/150‑1 (MQ=255)

                                                              tttCTGAATGCATTAACCACTCCAATAGCACAAGAGCTTTTAAACAAAAAACTGGTGATGAGTATTTTAGCCATGAAAATACATGATGGTGAGCCAGGATTATACGCCGCAATGGAAAATAATCACCCTTTGTGTGTCACACGGTTCctc                                                                                         >  1:628004/1‑150 (MQ=255)

                                                              tttCTGAATGCATTAACCACTCCAATAGCACAAGAGCTTTTAAACAAAAAACTGGTGATGAGTATTTTAGCCATGAAAATACATGATGGTGAGCCAGGATTATACGCCGCAATGGAAAATAATCACCCTTTGTGTGTCACACGGTTCctc                                                                                         >  1:1572443/1‑150 (MQ=255)

                                                              tttCTGAATGCATTAACCACTCCAATAGCACAAGAGCTTTTAAACAAAAAACTGGTGATGAGTATTTTAGCCATGAAAATACATGATGGTGAGCCAGGATTATACGCCGCAATGGAAAATAATCACCCTTTGTGTGTCACACGGTTCctc                                                                                         <  1:1006479/150‑1 (MQ=255)

                                                              tttCTGAATGCATTAACCACTCCAATAGCACAAGAGCTTTTAAACAAAAAACTGGTGATGAGTATTTTAGCCATGAAAATACATGATAGTGAGCCAGGATTATACGCCGCAATGGAAAATAATCACCCTTTGTGTGTCACACGGTTCctc                                                                                         <  1:2815397/150‑1 (MQ=255)

                                                              tttCTGAATGCATTAACCACTCCAATAGCACAAGAGCTTTTAAACAAAAAACTGGTGATGAGTATTTTAGCCATGAAAATACATGATAGTGAGCCAGGATTATACGCCGCAATGGAAAATAATCACCCTTTGTGTGTCACACGGTTCctc                                                                                         <  1:2815382/150‑1 (MQ=255)

                                                                 cTGAATGCATTAACCACTCCAATAGCACAAGAGCTTTTAAACAAAAAACTGGTGATGAGTATTTTAGCCATGAAAATACATGATGGTGAGCCAGGATTATACGCCGCAATGGAAAATAATCACCCTTTGTGTGTCACACGGTTCctctct                                                                                      >  1:20324/1‑150 (MQ=255)

                                                                  tGAATGCATTAACCACTCCAATAGCACAAGAGCTTTTAAACAAAAAACTGGTGATGAGTATTTTAGCCATGAAAATACATGATGGTGAGCCAGGATTATACGCCGCAATGGAAAATAATCACCCTTTGTGTGTCACACGGTTCCTCTCTa                                                                                     >  1:2969589/1‑150 (MQ=255)

                                                                    aaTGCATTAACCACTCCAATAGCACAAGAGCTTTTAAACAAAAAACTGGTGATGAGTATTTTAGCCATGAAAATACATGATGGTGAGCCAGGATTATACGCCGCAATGGAAAATAATCACCCTTTGTGTGTCACACGGTTCCTCTCTaaa                                                                                   >  2:664777/1‑150 (MQ=255)

                                                                    aaTGCATTAACCACTCCAATAGCACAAGAGCTTTTAAACAAAAAACTGGTGATGAGTATTTTAGCCATGAAAATACATGATGGTGAGCCAGGATTATACGCCGCAATGGAAAATAATCACCCTTTGTGTGTCACACGGTTCCTCTCTaaa                                                                                   <  1:2565720/150‑1 (MQ=255)

                                                                    aaTGCATTAACCACTCCAATAGCACAAGAGCTTTTAAACAAAAAACTGGTGATGAGTATTTTAGCCATGAAAATACATGATAGTGAGCCAGGATTATACGCCGCAATGGAAAATAATCACCCTTTGTGTGTCACACGGTTCCTCTCTaaa                                                                                   <  1:1676150/150‑1 (MQ=255)

                                                                      tGCATTAACCACTCCAATAGCACAAGAGCTTTTAAACAAAAAACTGGTGATGAGTATTTTAGCCATGAAAATACATGATGGTGAGCCAGGATTATACGCCGCAATGGAAAATAATCACCCTTTGTGTGTCACACGGTTCCTCTCTAAAAt                                                                                 <  1:2309796/150‑1 (MQ=255)

                                                                        cATTAACCACTCCAATAGCACAAGAGCTTTTAAACAAAAAACTGGTGATGAGTATTTTAGCCATGAAAATACATGATAGTGAGCCAGGATTATACGCCGCAATGGAAAATAATCACCCTTTGTGTGTCACACGGTTCCTCTCTAAAATTa                                                                               <  2:306974/150‑1 (MQ=255)

                                                                          ttAACCACTCCAATAGCACAAGAGCTTTTAAACAAAAAACTGGTGATGAGTATTTTAGCCATGAAAATACATGATGGTGAGCCAGGATTATACGCCGCAATGGAAAATAATCACCCTTTGTGTGTCACACGGTTCCTCTCTAAAATTAAt                                                                             <  2:3517975/150‑1 (MQ=255)

                                                                            aaCCACTCCAATAGCACAAGAGCTTTTAAACAAAAAACTGGTGATGAGTATTTTAGCCATGAAAATACATGATAGTGAGCCAGGATTATACGCCGCAATGGAAAATAATCACCCTTTGTGTGTCACACGGTTCCTCTCTAAAATTAATgg                                                                           <  1:689673/150‑1 (MQ=255)

                                                                               cACTCCAATAGCACAAGAGCTTTTAAACAAAAAACTGGTGATGAGTATTTTAGCCATGAAAATACATGATGGTGAGCCAGGATTATACGCCGCAATGGAAAATAATCACCCTTTGTGTGTCACACGGTTCCTCTCTAAAATTAATGGCAt                                                                        <  1:2695041/150‑1 (MQ=255)

                                                                               cACTCCAATAGCACAAGAGCTTTTAAACAAAAAACTGGTGATGAGTATTTTAGCCATGAAAATACATGATGGTGAGCCAGGATTATACGCCGCAATGGAAAATAATCACCCTTTGTGTGTCACACGGTTCCTCTCTAAAATTAATGGCAt                                                                        <  1:759431/150‑1 (MQ=255)

                                                                                aCTCCAATAGCACAAGAGCTTTTAAACAAAAAACTGGTGATGAGTATTTTAGCCATGAAAATACATGATGGTGAGCCAGGATTATACGCCGCAATGGAAAATAATCACCCTTTGTGTGTCACACGGTTCCTCTCTAAAATTAATGGCATc                                                                       <  2:1042989/150‑1 (MQ=255)

                                                                                 cTCCAATAGCACAAGAGCTTTTAAACAAAAAACTGGTGATGAGTATTTTAGCCATGAAAATACATGATGGTGAGCCAGGATTATACGCCGCAATGGAAAATAATCACCCTTTGTGTGTCACACGGTTCCTCTCTAAAATTAATGGCATCg                                                                      >  1:3428073/1‑150 (MQ=255)

                                                                                  tCCAATAGCACAAGAGCTTTTAAACAAAAAACTGGTGATGAGTATTTTAGCCATGAAAATACATGATAGTGAGCCAGGATTATACGCCGCAATGGAAAATAATCACCCTTTGTGTGTCACACGGTTCCTCTCTAAAATTAATGGCATCGc                                                                     <  1:1328517/150‑1 (MQ=255)

                                                                                   ccAATAGCACAAGAGCTTTTAAACAAAAAACTGGTGATGAGTATTTTAGCCATGAAAATACATGATAGTGAGCCAGGATTATACGCCGCAATGGAAAATAATCACCCTTTGTGTGTCACACGGTTCCTCTCTAAAATTAATGGCATCGcc                                                                    <  1:3722565/150‑1 (MQ=255)

                                                                                    cAATAGCACAAGAGCTTTTAAACAAAAAACTGGTGATGAGTATTTTAGCCATGAAAATACATGATAGTGAGCCAGGATTATACGCCGCAATGGAAAATAATCACCCTTTGTGTGTCACACGGTTCCTCTCTAAAATTAATGGCATCGCCt                                                                   >  1:2207091/1‑150 (MQ=255)

                                                                                     aaTAGCACAAGAGCTTTTAAACAAAAAACTGGTGATGAGTATTTTAGCCATGAAAATACATGATGGTGAGCCAGGATTATACGCCGCAATGGAAAATAATCACCCTTTGTGTGTCACACGGTTCCTCTCTAAAATTAATGGCATCGCCtt                                                                  >  2:2950101/1‑150 (MQ=255)

                                                                                     aaTAGCACAAGAGCTTTTAAACAAAAAACTGGTGATGAGTATTTTAGCCATGAAAATACATGATGGTGAGCCAGGATTATACGCCGCAATGGAAAATAATCACCCTTTGTGTGTCACACGGTTCCTCTCTAAAATTAATGGCATCGCCtt                                                                  >  2:3286406/1‑150 (MQ=255)

                                                                                       tAGCACAAGAGCTTTTAAACAAAAAACTGGTGATGAGTATTTTAGCCATGAAAATACATGATGGTGAGCCAGGATTATACGCCGCAATGGAAAATAATCACCCTTTGTGTGTCACACGGTTCCTCTCTAAAATTAATGGCATCGCCTTTa                                                                <  2:2783351/150‑1 (MQ=255)

                                                                                       tAGCACAAGAGCTTTTAAACAAAAAACTGGTGATGAGTATTTTAGCCATGAAAATACATGATAGTGAGCCAGGATTATACGCCGCAATGGAAAATAATCACCCTTTGTGTGTCACACGGTTCCTCTCTAAAATTAATGGCATCGCCTTTa                                                                >  1:4135571/1‑150 (MQ=255)

                                                                                          cacaAGAGCTTTTAAACAAAAAACTGGTGATGAGTATTTTAGCCATGAAAATACATGATGGTGAGCCAGGATTATACGCCGCAATGGAAAATAATCACCCTTTGTGTGTCACACGGTTCCTCTCTAAAATTAATGGCATCGCCTTTAAAt                                                             >  1:3478411/1‑150 (MQ=255)

                                                                                          cacaAGAGCTTTTAAACAAAAAACTGGTGATGAGTATTTTAGCCATGAAAATACATGATGGTGAGCCAGGATTATACGCCGCAATGGAAAATAATCACCCTTTGTGTGTCACACGGTTCCTCTCTAAAATTAATGGCATCGCCTTTAAAt                                                             >  1:2621410/1‑150 (MQ=255)

                                                                                            caAGAGCTTTTAAACAAAAAACTGGTGATGAGTATTTTAGCCATGAAAATACATGATGGTGAGCCAGGATTATACGCCGCAATGGAAAATAATCACCCTTTGTGTGTCACACGGTTCCTCTCTAAAATTAATGGCATCGCCTTTAAATAc                                                           <  1:2584811/150‑1 (MQ=255)

                                                                                               gagCTTTTAAACAAAAAACTGGTGATGAGTATTTTAGCCATGAAAATACATGATGGTGAGCCAGGATTATACGCCGCAATGGAAAATAATCACCCTTTGTGTGTCACACGGTTCCTCTCTAAAATTAATGGCATCGCCTTTAAATACAAg                                                        >  2:1140516/1‑150 (MQ=255)

                                                                                                 gCTTTTAAACAAAAAACTGGTGATGAGTATTTTAGCCATGAAAATACATGATGGTGAGCCAGGATTATACGCCGCAATGGAAAATAATCACCCTTTGTGTGTCACACGGTTCCTCTCTAAAATTAATGGCATCGCCTTTAAATACAAGtt                                                      <  1:4129495/150‑1 (MQ=255)

                                                                                                  cTTTTAAACAAAAAACTGGTGATGAGTATTTTAGCCATGAAAATACATGATGGTGAGCCAGGATTATACGCCGCAATGGAAAATAATCACCCTTTGTGTGTCACACGGTTCCTCTCTAAAATTAATGGCATCGCCTTTAAATACAAGTTg                                                     >  1:4155760/1‑150 (MQ=255)

                                                                                                   ttttAAACAAAAAACTGGTGATGAGTATTTTAGCCATGAAAATACATGATAGTGAGCCAGGATTATACGCCGCAATGGAAAATAATCACCCTTTGTGTGTCACACGGTTCCTCTCTAAAATTAATGGCATCGCCTTTAAATACAAGTTGa                                                    >  2:2359135/1‑150 (MQ=255)

                                                                                                    tttAAACTAAAATGTGTTTATGTGTTTTTTAGCCATGAAAATTAATGATGGTGATCCAGGATTATACGCCGCAATGGAAAATAATGACCCTTTTTGTGTCACACGGTTCCTCTCTATTATTAATGGAATCGCCTTTAAATAATAGTTGat                                                   <  2:2549050/150‑2 (MQ=255)

                                                                                                    tttAAACAAAAAACTGGTGATGAGTATTTTAGCCATGAAAATACATGATGGTGAGCCAGGATTATACGCCGCAATGGAAAATAATCACCCTTTGTGTGTCACACGGTTCCTCTCTAAAATTAATTGCATCGCCTTTAAATACAAGTTGAg                                                   <  1:2289529/150‑1 (MQ=255)

                                                                                                    tttAAACAAAAAACTGGTGATGAGTATTTTAGCCATGAAAATACATGATGGTGAGCCAGGATTATACGCCGCAATGGAAAATAATCACCCTTTGTGTGTCACACGGTTCCTCTCTAAAATTAATGGCATCGCCTTTAAATACAAGTTGAg                                                   >  2:1264044/1‑150 (MQ=255)

                                                                                                    tttAAACAAAAAACTGGTGATGAGTATTTTAGCCATGAAAATACATGATGGTGAGCCAGGATTATACGCCGCAATGGAAAATAATCACCCTTTGTGTGTCACACGGTTCCTCTCTAAAATTAATGGCATCGCCTTTAAATACAAGTTGAg                                                   >  1:4284038/1‑150 (MQ=255)

                                                                                                    tttAAACAAAAAACTGGTGATGAGTATTTTAGCCATGAAAATACATGATGGTGAGCCAGGATTATACGCCGCAATGGAAAATAATCACCCTTTGTGTGTCACACGGTTCCTCTCTAAAATTAATGGCATCGCCTTTAAATACAAGTTGAg                                                   <  2:4100021/150‑1 (MQ=255)

                                                                                                     ttAAACAAAAAACTGGTGATGAGTATTTTAGCCATGAAAATACATGATGGTGAGCCAGGATTATACGCCGCAATGGAAAATAATCACCCTTTGTGTGTCACACGGTTCCTCTCTAAAATTAATGGCATCGCCTTTAAATACAAGTTGTGc                                                  >  1:1376392/1‑150 (MQ=255)

                                                                                                     ttAAACAAAAAACTGGTGATGAGTATTTTAGCCATGAAAATACATGATAGTGAGCCAGGATTATACGCCGCAATGGAAAATAATCACCCTTTGTGTGTCACACGGTTCCTCTCTAAAATTAATGGCATCGCCTTTAAATACAAGTTGAGc                                                  >  1:12642/1‑150 (MQ=255)

                                                                                                      tAAACAAAAAACTGGTGATGAGTATTTTAGCCATGAAAATACATGATGGTGAGCCAGGATTATACGCCGCAATGGAAAATAATCACCCTTTGTGTGTCACACGGTTCCTCTCTAAAATTAATGGCATCGCCTTTAAATACAATTTGAGCa                                                 >  1:2575943/1‑150 (MQ=255)

                                                                                                      tAAACAAAAAACTGGTGATGAGTATTTTAGCCATGAAAATACATGATGGTGAGCCAGGATTATACGCCGCAATGGAAAATAATCACCCTTTGTGTGTCACACGGTTCCTCTCTAAAATTAATGGCATCGCCTTTAAATACAAGTTGAGCa                                                 >  1:3089148/1‑150 (MQ=255)

                                                                                                        aaCAAAAAACTGGTGATGAGTATTTTAGCCATGAAAATACATGATGGTGAGCCAGGATTATACGCCGCAATGGAAAATAATCACCCTTTGTGTGTCACACGGTTCCTCTCTAAAATTAATGGCATCGCCTTTAAATACAAGTTGAGCaaa                                               <  1:2011313/150‑1 (MQ=255)

                                                                                                         aaaaaaaaCTGGTGATGAGTATTTTAGCCATGAAAATACATGATAGTGAGCCATGATTATACGCCGCAATGGAAAATAATCACCCTTTGTGTGTCACACGGTTCCTCTCTAAAATTAATGGCATCGCCTTTAAATACAAGTTGAGCAAAg                                              <  2:4205584/148‑1 (MQ=255)

                                                                                                         aCAAAAAACTGGTGATGAGTATTTTAGCCATGAAAATACATGATAGTGAGCCAGGATTATACGCCGCAATGGAAAATAATCACCCTTTGTGTGTCACACGGTTCCTCTCTAAAATTAATGGCATCGCCTTTAAATACAAGTTGAGCAAAg                                              <  2:4618245/150‑1 (MQ=255)

                                                                                                         aCAAAAAACTGGTGATGAGTATTTTAGCCATGAAAATACATGATAGTGAGCCAGGATTATACGCCGCAATGGAAAATAATCACCCTTTGTGTGTCACACGGTTCCTCTCTAAAATTAATGGCATCGCCTTTAAATACAAGTTGAGCAAAg                                              <  1:3569517/150‑1 (MQ=255)

                                                                                                          cAAAAAACTGGTGATGAGTATTTTAGCCATGAAAATACATGATGGTGAGCCAGGATTATACGCCGCAATGGAAAATAATCACCCTTTGTGTGTCACACGGTTCCTCTCTAAAATTAATGGCATCGCCTTTAAATACAAGTTGAGCAAAGc                                             >  1:4463879/1‑150 (MQ=255)

                                                                                                          cAAAAAACTGGTGATGAGTATTTTAGCCATGAAAATACATGATGGTGAGCCAGGATTATACGCCGCAATGGAAAATAATCACCCTTTGTGTGTCACACGGTTCCTCTCTAAAATTAATGGCATCGCCTTTAAATACAAGTTGAGCAAAGc                                             >  1:1702512/1‑150 (MQ=255)

                                                                                                          cAAAAAACTGGTGATGAGTATTTTAGCCATGAAAATACATGATAGTGAGCCAGGATTATACGCCGCAATGGAAAATAATCACCCTTTGTGTGTCACACGGTTCCTCTCTAAAATTAATGGCATCGCCTTTAAATACAAGTTGAGCAAAGc                                             >  2:22145/1‑150 (MQ=255)

                                                                                                            aaaaaCTGGTGATGAGTATTTTAGCCATGAAAATACATGATAGTGAGCCAGGATTATACGCCGCAATGGAAAATAATCACCCTTTGTGTGTCACACGGTTCCTCTCTAAAATTAATGGCATCGCCTTTAAATACAAGTTGAGCAAAGCTa                                           >  2:3224657/1‑150 (MQ=255)

                                                                                                                aCTGGTGATGAGTATTTTAGCCATGAAAATACATGATGGTGAGCCAGGATTATACGCCGCAATGGAAAATAATCACCCTTTGTGTGTCACACGGTTCCTCTCTAAAATTAATGGCATCGCCTTTAAATACAAGTTGAGCAAAGCTAAcat                                       <  1:1023127/150‑1 (MQ=255)

                                                                                                                  tGGTGATGAGTATTTTATCCATGAAAATACATGATGGTGAGACTGGATTATACGCCGCAATGGAAAATAATCACCCTTTGTGTGTCACACGGTTCCTATCTAAAATTAATTTCATCGCCTTTAAATACAAGTTGAGCAAAGCTAAcatca                                     <  2:285138/150‑1 (MQ=255)

                                                                                                                        tgaGTATTTTAGCCATGAAAATACATGATGGTGAGCCAGGATTATACGCCGCAATGGAAAATAATCACCCTTTGTGTGTCACACGGTTCCTCTCTAAAATTAATGGCATCGCCTTTAAATACAAGTTGAGCAAAGCTAACATCATGGAtt                               <  2:3495860/150‑1 (MQ=255)

                                                                                                                         gaGTATTTTAGCCATGAAAATACATGATGGTGAGCCAGGATTATACGCCGCAATGGAAAATAATCACCCTTTGTGTGTCACACGGTTCCTCTCTAAAATTAATGGCATCGCCTTTAAATACAAGTTGAGCAAAGCTAACATCATGGAttt                              <  1:706135/150‑1 (MQ=255)

                                                                                                                          aGTATTTTAGCCATGAAAATACATGATGGTGAGCCAGGATTATACGCCGCAATGGAAAATAATCACCCTTTGTGTGTCACACGGTTCCTCTCTAAAATTAATGGCATCGCCTTTAAATACAAGTTGAGCAAAGCTAACATCATGGATtta                             >  1:4155254/1‑150 (MQ=255)

                                                                                                                           gTATTTTAGCCATGAAAATACATGATAGTGAGCCAGGATTATACGCCGCAATGGAAAATAATCACCCTTTGTGTGTCACACGGTTCCTCTCTAAAATTAATGGCATCGCCTTTAAATACAAGTTGAGCAAAGCTAACATCATGGATttat                            <  1:2766439/150‑1 (MQ=255)

                                                                                                                              ttttAGCCATGAAAATACATGATAGTGAGCCAGGATTATACGCCGCAATGGAAAATAATCACCCTTTGTGTGTCACACGGTTCCTCTCTAAAATTAATGGCATCGCCTTTAAATACAAGTTGAGCAAAGCTAACATCATGGATTTATTaa                         <  1:3052306/150‑1 (MQ=255)

                                                                                                                               tttAGCCATGAAAATACATGATAGTGAGCCAGGATTATACGCCGCAATGGAAAATAATCACCCTTTGTGTGTCACACGGTTCCTCTCTAAAATTAATGGCATCGCCTTTAAATACAAGTTGAGCAAAGCTAACATCATGGATTTATTaaa                        >  1:1484729/1‑150 (MQ=255)

                                                                                                                                ttAGCCATGAAAATACATGATAGTGAGCCAGGATTATACGCCGCAATGGAAAATAATCACCCTTTGTGTGTCACACGGTTCCTCTCTAAAATTAATGGCATCGCCTTTAAATACAAGTTGAGCAAAGCTAACATCATGGATTTATTaaaa                       <  2:2535905/150‑1 (MQ=255)

                                                                                                                                 tAGCCATGAAAATACATGATGGTGAGCCAGGATTATACGCCGCAATGGAAAATAATCACCCTTTGTGTGTCACACGGTTCCTCTCTAAAATTAATGGCATCGCCTTTAGATACAAGTTGAGCAAAGCTAACATCATGGATTTATTAAAAg                      >  2:1570011/1‑150 (MQ=255)

                                                                                                                                 tAGCCATGAAAATACATGATGGTGAGCCAGGATTATACGCCGCAATGGAAAATAATCACCCTTTGTGTGTCACACGGTTCCTCTCTAAAATTAATGGCATCGCCTTTAAATACAAGTTGAGCAAAGCTAACATCATGGATTTATTAAAAg                      >  2:3144072/1‑150 (MQ=255)

                                                                                                                                 tAGCCATGAAAATACATGATGGTGAGCCAGGATTATACGCCGCAATGGAAAATAATCACCCTTTGTGTGTCACACGGTTCCTCTCTAAAATTAATGGCATCGCCTTTAAATACAAGTTGAGCAAAGCTAACATCATGGATTTATTAAAAg                      >  2:4418525/1‑150 (MQ=255)

                                                                                                                                 tAGCCATGAAAATACATGATAGTGAGCCAGGATTATACGCCGCAATGGAAAATAATCACCCTTTGTGTGTCACACGGTTCCTCTCTAAAATTAATGGCATCGCCTTTAAATACAAGTTGAGCAAAGCTAACATCATGGATTTATTAAAAg                      >  1:720822/1‑150 (MQ=255)

                                                                                                                                  aGCCATGAAAATACATGATGGTGAGCCAGGATTATACGCCGCAATGGAAAATAATCACCCTTTGTGTGTCACACGGTTCCTCTCTAAAATTAATGGCATCGCCTTTAAATACAAGTTGAGCAAAGCTAACATCATGGATTTATTAAAAgg                     >  2:3936545/1‑150 (MQ=255)

                                                                                                                                      aTGAAAATACATGATGGTGAGCCAGGATTATACGCCGCAATGGAAAATAATCACCCTTTGTGTGTCACACGGTTCCTCTCTAAAATTAATGGCATCGCCTTTAAATACAAGTTGAGCAAAGCTAACATCATGGATTTATTAAAAGGAGCt                 <  2:2707745/150‑1 (MQ=255)

                                                                                                                                      aTGAAAATACATGATAGTGAGCCAGGATTATACGCCGCAATGGAAAATAATCACCCTTTGTGTGTCACACGGTTCCTCTCTAAAATTAATGGCATCGCCTTTAAATACAAGTTGAGCAAAGCTAACATCATGGATTTATTAAAAGGAGCt                 <  2:4365970/150‑1 (MQ=255)

                                                                                                                                           aaTACATGATGGTGAGCCAGGATTATACGCCGCAATGGAAAATAATCACCCTTTGTGTGTCACACGGTTCCTCTCTAAAATTAATGGCATCGCCTTTAAATACAAGTTGAGCAAAGCTAACATCATGGATTTATTAAAAGGAGCTACAGc            <  2:1070931/150‑1 (MQ=255)

                                                                                                                                           aaTACATGATAGTGAGCCAGGATTATACGCCGCAATGGAAAATAATCACCCTTTGTGTGTCACACGGTTCCTCTCTAAAATTAATGGCATCGCCTTTAAATACAAGTTGAGCAAAGCTAACATCATGGATTTATTAAAAGGAGCTACAGc            >  2:1469934/1‑150 (MQ=255)

                                                                                                                                                atgatgGTGAGCCAGGATTATACGCCGCAATGGAAAATAATCACCCTTTGTGTGTCACACGGTTCCTCTCTAAAATTAATGGCATCGCCTTTAAATACAAGTTGAGCAAAGCTAACATCATGGATTTATTAAAAGGAGCTACAGCACAgg       >  1:2307246/1‑150 (MQ=255)

                                                                                                                                                     ggTGAGCCAGGATTATACGCCGCAATGGAAAATAATCACCCTTTGTGTGTCACACGGTTCCTCTCTAAAATTAATGGCATCGCCTTTAAATACAAGTTGAGCAAAGCTAACATCATGGATTTATTAAAAGGAGCTACAGCACAGGGAccc  >  1:4022934/1‑150 (MQ=255)

CTAACGAAACACCTGGACTTTATATCTCCATGTTGTATGGATTCGATGAAATAATCGATATCTTTCTGAATGCATTAACCACTCCAATAGCACAAGAGCTTTTAAACAAAAAACTGGTGATGAGTATTTTAGCCATGAAAATACATGATGGTGAGCCAGGATTATACGCCGCAATGGAAAATAATCACCCTTTGTGTGTCACACGGTTCCTCTCTAAAATTAATGGCATCGCCTTTAAATACAAGTTGAGCAAAGCTAACATCATGGATTTATTAAAAGGAGCTACAGCACAGGGAACC  >  CP009273/1798685‑1798983

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A