Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F247 I0 R1
|
1496 |
299.8 |
9582018 |
97.8% |
9371213 |
149.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
CP009273 |
2,491,279 |
G→T |
11.6% |
R166S (CGT→AGT) |
alaC ← |
valine‑pyruvate aminotransferase 3 |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | CP009273 | 2,491,279 | 0 | G | T | 11.6%
| 1032.3
/ 70.0
| 303 | R166S (CGT→AGT) | alaC | valine‑pyruvate aminotransferase 3 |
| Reads supporting (aligned to +/- strand): ref base G (132/135); new base T (24/12); total (156/147) |
| Fisher's exact test for biased strand distribution p-value = 7.46e-02 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 308 total aligned reads displayed.
TCGGCATAGGCCAGGTCATGGACCACCAGCACATCGTAGCGTTTCGCCAGCGCCACTACTTTTTCGAAGAACTCCAGTTCCACGCATTGCGCGGTTGGGTTTGACGGGAAGCCGAGGATCATCATCTTCGGTTTCGGATAACTTTCACGAATGGCTCGCTCCAGTTCGTTGAAGAAATCGACACCTTCCACCAGCGGCACTGAGCGTACCTGCGCCCCGGCAATCACCGCGCCATAAATATGGATCGGGTAACTTGGATTCGGCACCAGCACCGTGTCACCATGATCCAGCGTCGCC > CP009273/2491131‑2491427
|
gCATAGGCCAGGTCATGGACCACCAGCACATCGTAGCGTTTCGCCAGCGCCACTACTTTTTCGAAGAACTCCAGTTCCACGCATTGCGCGGTTGGGTTTGACGGGAAGCCGAGGATCATCATCTTCGGTTTCGGATAACTTTCACGAAt > 1:4482068/1‑149 (MQ=255)
cATAGGCCAGGTCATGGACCACCAGCACATCGTAGCGTTTCGCCAGCGCCACTACTTTTTCGAAGAACTCCAGTTCCACGCATTGCGCGGTTGGGTTTGACGGGAAGCCGAGGATCATCATCTTCGGTTTCGGATAACTTTCACGAATg > 2:4774779/1‑149 (MQ=255)
cATAGGCCAGGTCATGGACCACCAGCACATCGTAGCGTTTCGCCAGCGCCACTACTTTTTCGAAGAACTCCAGTTCCACGCATTGCGCGGTTGGGTTTGACGGGAAGCCGAGGATCATCATCTTCGGTTTCGGATAACTTTCACGAATg > 2:186660/1‑149 (MQ=255)
aGGCCAGGTCATGGACCACCAGCACATCGTAGCGTTTCGCCAGCGCCACTACTTTTTCGAAGAACTCCAGTTCCACGCATTGCGCGGTTGGGTTTGACGGGAAGCCGAGGATCATCATCTTCGGTTTCGGATAACTTTCACGAATGgct < 2:724981/149‑1 (MQ=255)
ggCCAGGTCATGTACCACCAGCACATCGTAGCGTTTCGCCAGCGCCACTACTTTTTCGAAGAACTCCAGTTCCACGCATTGCGCGGTTGGGTTTGACGGGAAGCCGAGGATCATCATCTTCGGTTTCGGATAACTTTCACGAATGgctc < 1:1999132/149‑1 (MQ=255)
ggCCAGGTCATGGACCACCAGCACATCGTAGCGTTTCGCCAGCGCCACTACTTTTTCGAAGAACTCCAGTTCCACGCATTGCGCGGTTGGGTTTGACGGGAAGCCGAGGATCATCATCTTCGGTTTCGGATAACTTTCACGAATGgctc < 2:949910/149‑1 (MQ=255)
ccAGGTCATGGACCACCAGCACATCGTAGCGTTTCGCCAGCGCCACTACTTTTTCGAAGAACTCCAGTTCCACGCATTGCGCGGTTGGGTTTGACGGGAAGCCGAGGATCATCATCTTCGGTTTCGGATAACTTTCACGAATGgctcgc > 1:3245614/1‑149 (MQ=255)
cAGGTCATGGACCACCAGCACATCGTAGCGTTTCGCCAGCGCCACTACTTTTTCGAAGAACTCCAGTTCCACGCATTGCGCGGTTGGGTTTGACGGGAAGCCGAGGATCATCATCTTCGGTTTCGGATAACTTTCACGAATGgctcgct > 1:3881762/1‑149 (MQ=255)
ggTCATGGACCACCAGCACATCGTAGCGTTTCGCCAGCGCCACAACTTTTACGAAGAACTCCAGTTCCACTCATAGCGCGTTTGGGTATGACGGGAATCCGAGGATCATCATCTTCGGTAACGGATAACATTCACTAATGGCTCGCTcc > 1:4627798/1‑149 (MQ=255)
gTCATGGACCACCAGCACATCGTAGCGTTTCGCCAGCGCCACTACTTTTTCGAAGAACTCCAGTTCCACGCATTGCGCGGTTGGGTTTGACGGGAAGCCGAGGATCATCATCTTCGGTTTCGGATAACTTTCACGAATGGCTCGCTCCa > 2:3266510/1‑149 (MQ=255)
tCATGGACCACCAGCACATCGTAGCGTTTCGCCAGCGCCACTACTTTTTCGAAGAACTCCAGTTCCACGCATTGCGCGGTTGGGTTTGACGGGAAGCCGAGGATCATCATCTTCGGTTTCGGATAACTTTCACGAATGGCTCGCTCCAg < 1:554038/149‑1 (MQ=255)
aTGGACCACCAGCACATCGTAGCGTTTCGCCAGCGCCACTACTTTTTCGAAGAACTCCAGTTCCACGCATTGCGCGGTTGGGTTTGACGGGAAGCCGAGGATCATCATCTTCGGTTTCGGATAACTTTCACTAATGGCTCGCTCCAGtt > 1:1417841/1‑149 (MQ=255)
aTGGACCACCAGCACATCGTAGCGTTTCGCCAGCGCCACTACTTTTTCGAAGAACTCCAGTTCCACGCATTGCGCGGTTGGGTTTGACGGGAAGCCGAGGATCATCATCTTCGGTTTCGGATAACTTTCACTAATGGCTCGCTCCAGtt < 2:4449368/149‑1 (MQ=255)
aTGGACCACCAGCACATCGTAGCGTTTCGCCAGCGCCACTACTTTTTCGAAGAACTCCAGTTCCACGCATTGCGCGGTTGGGTTTGACGGGAAGCCGAGGATCATCATCTTCGGTTTCGGATAACTTTCACGAATGGCTCGCTCCAGtt < 2:1170562/149‑1 (MQ=255)
aTGGACCACCAGCACATCGTAGCGTTTCGCCAGCGCCACTACTTTTTCGAAGAACTCCAGTTCCACGCATTGCGCGGTTGGGTTTGACGGGAAGCCGAGGATCATCATCTTCGGTTTCGGATAACTTTCACGAATGGCTCGCTCCAGtt > 1:1755046/1‑149 (MQ=255)
tGGACCACCAGCACGTCGTAGCGTTTCGCCAGCGCCACTACTTTTTCGAAGAACTCCAGTTCCACGCATTGCGCGGTTGGGTTTGACGGGAAGCCGAGGATCATCATCTTCGGTTTCGGATAACTTTCACGAATGGCTCGCTCCAGTTc < 2:261517/149‑1 (MQ=255)
gACCACCAGCACATCGTAGCGTTTCGCCAGCGCCACTACTTTTTCGAAGAACTCCAGTTCCACGCATTGCGCGGTTGGGTTTGACGGGAAGCCGAGGATCATCATCTTCGGTTTCGGATAACTTTCACGAATGGCTCGCTCCAGTTCGt > 2:4139599/1‑149 (MQ=255)
gCACATCGTAGCGTTTCGCCAGCGCCACTACTTTTTCGAAGAACTCCAGTTCCACGCATTGCGCGGTTGGGTTTGACGGGAAGCCGAGGATCATCATCTTCGGTTTCGGATAACTTTCACGAATGGCTCGCTCCAGTTCGTTGAAGaaa > 1:1487239/1‑149 (MQ=255)
gCACATCGTAGCGTTTCGCCAGCGCCACTACTTTTTCGAAGAACTCCAGTTCCACGCATTGCGCGGTTGGGTTTGACGGGAAGCCGAGGATCATCATCTTCGGTTTCGGATAACTTTCACGAATGGCTCGCTCCAGTTCGTTGAAGaaa < 1:98645/149‑1 (MQ=255)
gCACATCGTAGCGTTTCGCCAGCGCCACTACTTTTTCGAAGAACTCCAGTTCCACGCATTGCGCGGTTGGGTTTGACGGGAAGCCGAGGATCATCATCTTCGGTTTCGGATAACTTTCACGAATGGCTCGCTCCAGTTCGTTGAAGaaa > 1:3052863/1‑149 (MQ=255)
gCACATCGTAGCGTTTCGCCAGCGCCACTACTTTTTCGAAGAACTCCAGTTCCACGCATTGCGCGGTTGGGTTTGACGGGAAGCCGAGGATCATCATCTTCGGTTTCGGATAACTTTCACGAATGGCTCGCTCCAGTTCGTTGAAGaaa < 1:674753/149‑1 (MQ=255)
gCACATCGTAGCGTTTCGCCAGCGCCACTACTTTTTCGAAGAACTCCAGTTCCACGCATTGCGCGGTTGGGTTTGACGGGAAGCCGAGGATCATCATCTTCGGTTTCGGATAACTTTCACGAATGGCTCGCTCCAGTTCGTTGAAGaaa < 1:2208990/149‑1 (MQ=255)
cacaTCGTAGCGTTTCGCCAGCGCCACTACTTTTTCGAAGAACTCCAGTTCCACGCATTGCGCGGTTGGGTTTGACGGGAAGCCGAGGATCATCATCTTCGGTTTCGGATAACTTTCACGAATGGCTCGCTCCAGTTCGTTGAAGAAAt < 2:3848942/149‑1 (MQ=255)
aTCGTAGCGTTTCGCCAGCGCCACTACTTTTTCGAAGAACTCCAGTTCCACGCATTGCGCGGTTGGGTTTGACGGGAAGCCGAGGATCATCATCTTCGGTTTCGGATAACTTTCACGAATGGCTCGCTCCAGTTCGTTGAAGAAATCGa > 1:2575048/1‑149 (MQ=255)
cGTAGCGTTTCGCCAGCGCCACTACTTTTTCGAAGAACTCCAGTTCCACGCATTGCGCGGTTGGGTTTGACGGGAAGCCGAGGATCATCATCTTCGGTTTCGGATAACTTTCACGAATGGCTCGCTCCAGTTCGTTGAAGAAATCGaca < 1:2833165/149‑1 (MQ=255)
gTAGCGTTTCGCCAGCGCCACTACTTTTTCGAAGAACTCCAGTTCCACGCATTGCGCGGTTGGGTTTGACGGGAAGCCGAGGATCATCATCTTCGGTTTCGGATAACTTTCACGAATGGCTCGCTCCAGTTCGTTGAAGAAATCGacac > 1:1561203/1‑149 (MQ=255)
cGTTTCGCCAGCGCCACTACTTTTTCGAAGAACTCCAGTTCCACGCATTGCGCGGTTGGGTTTGACGGGAAGCCGAGGATCATCATCTTCGGTTTCGGATAACTTTCACGAATGGCTCGCTCCAGTTCGTTGAAGAAATCGACACCTTc < 2:773984/149‑1 (MQ=255)
cGTTTCGCCAGCGCCACTACTTTTTCGAAGAACTCCAGTTCCACGCATTGCGCGGTTGGGTTTGACGGGAAGCCGAGGATCATCATCTTCGGTTTCGGATAACTTTCACGAATGGCTCGCTCCAGTTCGTTGAAGAAATCGACACCTTc < 1:1791527/149‑1 (MQ=255)
gTTTCGCCAGCGCCACTACTTTTTCGAAGAACTCCAGTTCCACGCATTGCGCGGTTGGGTTTGACGGGAAGCCGAGGATCATCATCTTCGGTTTCGGATAACTTTCACTAATGGCTCGCTCCAGTTCGTTGAAGAAATCGACACCTTcc > 2:565729/1‑149 (MQ=255)
tCGCCAGCGCCACTACTTTTTCGAAGAACTCCAGTTCCACGCATTGCGCGGTTGGGTTTGACGGGAAGCCGAGGATCATCATCTTCGGTTTCGGATAACTTTCACGAATGGCTCGCTCCAGTTCGTTGAAGAAATCGACACCTTccacc > 2:1695987/1‑149 (MQ=255)
ccAGCGCCACTACTTTTTCGAAGAACTCCAGTTCCACGCATTGCGCGGTTGGGTTTGACGGGAAGCCGAGGATCATCATCTTCGGTTTCGGATAACTTTCACGAATGGCTCGCTCCAGTTCGTTGAAGAAATCGACACCTTCCACCAGc > 1:4773283/1‑149 (MQ=255)
ccAGCGCCACTACTTTTTCGAAGAACTCCAGTTCCACGCATTGCGCGGTTGGGTTTGACGGGAAGCCGAGGATCATCATCTTCGGTTTCGGATAACTTTCACGAATGGCTCGCTCCAGTTCGTTGAAGAAATCGACACCTTCCACCAGc < 2:4085724/149‑1 (MQ=255)
cAGCGCCACTACTTTTTCGAAGAACTCCAGTTCCACGCATTGCGCGGTTGGGTTTGACGGGAAGCCGAGGATCATCATCTTCGGTTTCGGATAACTTTCACGAATGGCTCGCTCCAGTTCGTTGAAGAAATCGACACCTTCCACCAGCg > 1:3265756/1‑149 (MQ=255)
cAGCGCCACTACTTTTTCGAAGAACTCCAGTTCCACGCATTGCGCGGTTGGGTTTGACGGGAAGCCGAGGATCATCATCTTCGGTTTCGGATAACTTTCACGAATGGCTCGCTCCAGTTCGTTGAAGAAATCGACACCTTCCACCAGCg > 1:758252/1‑149 (MQ=255)
gcgcCACTACTTTTTCGAAGAACTCCAGTTCCACGCATTGCGCGGTTGGGTTTGACGGGAAGCCGAGGATCATCATCTTCGGTTTCGGATAACTTTCACGAATGGCTCGCTCCAGTTCGTTGAAGAAATCGACACCTTCCACCAGCGGc > 1:2149408/1‑149 (MQ=255)
gcCACTACTTTTTCGAAGAACTCCAGTTCCACGCATTGCGGGGTTGGGTTTGACGGGAAGCCGAGGATCATCATCTTCGGTTTCGGATAAATTTCACGAATGGCTCGCTCCAGTTCGTTGAAGAAATCGACACCTTCCACCAGCGGCAc < 1:110422/149‑1 (MQ=255)
actactTTTTCGAAGAACTCCAGTTCCACGCATTGCGCGGTTGGGTTTGACGGGAAGCCGAGGATCATCATCTTCGGTTTCGGATAACTTTCACGAATGGCTCGCTCCAGTTCGTTGAATAAATCGACACCTTCCACCAGCGGCACTGa < 1:90924/149‑1 (MQ=255)
ctactTTTTCGAAGAACTCCAGTTCCACGCATTGCGCGGTTGGGTTTGACGGGAAGCCGAGGATCATCATCTTCGGTTTCGGATAACTTTCACGAATGGCTCGCTCCAGTTCGTTGAAGAAATCGACACCTTCCACCAGCGGCACTGAg < 1:295811/149‑1 (MQ=255)
tactTTTTCGAAGAACTCCAGTTCCACGCATTGCGCGGTTGGGTTTGACGGGACGTCGAGGATCATCATCTTCGGTTTCGGATAACTTTCACTAATGGCTCGCTCCAGTTCGTTGAAGAAATCGACACCTTCCACCAGCGGCACTGAGc > 1:1338233/1‑149 (MQ=255)
tttttCGAAGAACTCCAGTTCCACGCATTGCGCGGTTGGGTTTGACGGGAAGCCGAGGATCATCATCTTCGGTTTCGGATAACTTTCACGAATGGCTCGCTCCAGTTCGTTGAAGAAATCGACACCTTCCACCAGCGGCACTGAGCGTa > 2:3682352/1‑149 (MQ=255)
tttCGAAGAACTCCAGTTCCACGCATTGCGCGGTTGGGTTTGACGGGAAGCCGAGGATCATCATCTTCGGTTTCGGATAACTTTCACGAATGGCTCGCTCCAGTTCGTTGAAGAAATCGACACCTTCCACCAGCGGCACTGAGCGTAcc < 2:3056464/149‑1 (MQ=255)
cGAAGAACTCCAGTTCCACGCATTGCGCGGTTGGGTTTGACGGGAAGCCGAGGATCATCATCTTCGGTTTCGGATAACTTTCACGAATGGCTCGCTCCAGTTCGTTGAAGAAATCGACACCTTCCACCAGCGGCACTGAGCGTACCTgc < 2:3106633/149‑1 (MQ=255)
gaagaaCTCCAGTTCCACGCATTGCGCGGTTGGGTTTGACGGGAAGCCGAGGATCATCATCTTCGGTTTCGGATAACTTTCACGAATGGCTCGCTCCAGTTCGTTGAAGAAATCGACACCTTCCACCAGCGGCACTGAGCGTACCTgcg > 2:1130549/1‑149 (MQ=255)
aagaaCTCCAGTTCCACGCATTGCGCGGTTGGGTTTGACGGGAAGCCGAGGATCATCATCTTCGGTTTCGGATAACTTTCACTAATGGCTCGCTCCAGTTCGTTGAAGAAATCGACACCTTCCACCAGCGGCACTGAGCGTACCTgcgc > 1:4453130/1‑149 (MQ=255)
aagaaCTCCAGTTCCACGCATTGCGCGGTTGGGTTTGACGGGAAGCCGAGGATCATCATCTTCGGTTTCGGATAACTTTCACGAATGGCTCGCTCCAGTTCGTTGAAGAAATCGACACCTTCCACCAGCGGCACTGAGCGTACCTgcgc < 2:3460526/149‑1 (MQ=255)
aagaaCTCCAGTTCCACGCATTGCGCGGTTGGGTTTGACGGGAAGCCGAGGATCATCATCTTCGGTTTCGGATAACTTTCACGAATGGCTCGCTCCAGTTCGTTGAAGAAATCGACACCTTCCACCAGCGGCACTGAGCGTACCTgcgc > 1:2401919/1‑149 (MQ=255)
gaaCTCCAGTTCCACGCATTGCGCGGTTGGGTTTGACGGGAAGCCGAGGATCATCATCTTCGGTTTCGGATAACTTTCACGAATGGCTCGCTCCAGTTCGTTGAAGAAATCGACACCTTCCACCAGCGGCACTGAGCGTACCTGCGccc > 2:2830780/1‑149 (MQ=255)
aaCTCCAGTTCCACGCATTGCGCGGTTGGGTTTGACGGGAAGCCGAGGATCATCATCTTCGGTTTCGGATAACTTTCACGAATGGCTCGCTCCAGTTCGTTGAAGAAATCGACACCTTCCACCAGCGGCACTGAGCGTACCTGCGcccc < 2:3172187/149‑1 (MQ=255)
cAGTTCCACGCATTGCGCGGTTGGGTTTGACGGGAAGCCGAGGATCATCATCTTCGGTTTCGGATAACTTTCACGAATGGCTCGCTCCAGTTCGTTGAAGAAATCGACACCTTCCACCAGCGGCACTGAGCGTACCTGCGCCCCGGCaa < 2:2957344/149‑1 (MQ=255)
cAGTTCCACGCATTGCGCGGTTGGGTTTGACGGGAAGCCGAGGATCATCATCTTCGGTTTCGGATAACTTTCACGAATGGCTCGCTCCAGTTCGTTGAAGAAATCGACACCTTCCACCAGCGGCACTGAGCGTACCTGCGCCCCGGCaa < 2:2075484/149‑1 (MQ=255)
tCCACGCATTGCGCGGTTGGGTTTGACGGGAAGCCGAGGATCATCATCTTCGGTTTCGGATAACTTTCACGAATGGCTCGCTCCAGTTCGTTGAAGAAATCGACACCTTCCACCAGCGGCACTGAGCGTACCTGCGCCCCGGCAATCAc < 2:4729411/149‑1 (MQ=255)
aCGCATTGCGCGGTTGGGTTTGACGGGAAGCCGAGGATCATCATCTTCGGTTTCGGATAACTTTCACGAATGGCTCGCTCCAGTTCGTTGAAGAAATCGACACCTTCCACCAGCGGCACTGAGCGTACCTGCGCCCCGGCAATCACcgc > 1:3815934/1‑149 (MQ=255)
cATTGCGCGGTTGGGTTTGACGGGAAGCCGAGGATCATCATCTTCGGGTTCGGAGAACTTTCACGCATGGCTCGCTCCAGTTCGTTGAAGAAATCGACACCTTCCACCAGCGGCACTGAGCGTACCTGCGCCCCGGCAATCACCGCGcc < 2:1668174/149‑1 (MQ=255)
aTTGCGCGGTTGGGTTTGACGGGAAGCCGAGGATCATCATCTTCGGTTTCGGATAACTTTCACTAATGGCTCGCTCCAGTTCGTTGAAGAAATCGACACCTTCCACCAGCGGCACTGAGCGTACCTGCGCCCCGGCAATCACCGCGCCa < 2:630726/149‑1 (MQ=255)
aTTGCGCGGTTGGGTTTGACGGGAAGCCGAGGATCATCATCTTCGGTTTCGGATAACTTTCACGAATGGCTCGCTCCAGTTCGTTGAAGAAATCGACACCTTCCACCAGCGGCACTGAGCGTACCTGCGCCCCGGCAATCACCGCGCCa > 1:3181343/1‑149 (MQ=255)
cgGTTGGGTTTGACGGGAAGCCGAGAATCATCATCTTCGGTTTCGGATAACTTTCACGAATGGCTCGCTCCAGTTCGTTGAAGAAATCGACACCTTCCACCAGCGGCACTGAGCGTACCTGCGCCCCGGCAATCACCGCGCCATAAata < 2:3574442/149‑1 (MQ=255)
ggTTGGGTTTGACGGGAAGCCGAGGATCATCATCTTCGGTTTCGGATAACTTTCACGAATGGCTCGCTCCAGTTCGTTGAAGAAATCGACACCTTCCACCAGCGGCACTGAGCGTACCTGCGCCCCGGCAATCACCGCGCCATAAatat > 2:2693108/1‑149 (MQ=255)
gTTGGGTTTGACGGGAAGCCGAGGATCATCATCTTCGGTTTCGGATAACTTTCACTAATGGCTCGCTCCAGTTCGTTGAAGAAATCGACACCTTCCACCAGCGGCACTGAGCGTACCTGCGCCCCGGCAATCACCGCGCCATAAATATg > 1:1051117/1‑149 (MQ=255)
tGGGTTTGACGGGAAGCCGAGGATCATCATCTTCGGTTTCGGATAACTTTCACGAATGGCTCGCTCCAGTTCGTTGAAGAAATCGACACCTTCCACCAGCGGCACTGAGCGTACCTGCGCCCCGGCAATCACCGCGCCATAAATATGGa < 1:1919758/149‑1 (MQ=255)
ggTTTGACGGGAAGCCGAGGATCATCATCTTCGGTTTCGGATAACTTTCACTAATGGCTCGCTCCAGTTCGTTGAAGAAATCGACACCTTCCACCAGCGGCACTGAGCGTACCTGCGCCCCGGCAATCACCGCGCCATAAATATGGATc > 2:4694547/1‑149 (MQ=255)
gTTTGACGGGAAGCCGAGGATCATCATCTTCGGTTTCGGATAACTTTCACGAATGGCTCGCTCCAGTTCGTTGAAGAAATCGACACCTTCCACCAGCGGCACTGAGCGTACCTGCGCCCCGGCAATCACCGCGCCATAAATATGGATCg > 2:2315332/1‑149 (MQ=255)
aCGGGAAGCCGAGGATCATCATCTTCGGTTTCGGATAACTTTCACTAATGGCTCGCTCCAGTTCGTTGAAGAAATCGACACCTTCCACCAGCGGCACTGAGCGTACCTGCGCCCCGGCAATCACCGCGCCATAAATATGGATCGGGTaa < 2:4212188/149‑1 (MQ=255)
aCGGGAAGCCGAGGATCATCATCTTCGGTTTCGGATAACTTTCACGAATGGCTCGCTCCAGTTCGTTGAAGAAATCGACACCTTCCACCAGCGGCACTGAGCGTACCTGCGCCCCGGCAATCACCGCGCCATAAATATGGATCGGGtca > 2:4417687/1‑147 (MQ=255)
cGGGAAGCCGAGGATCATCATCTTCGGTTTCGGATAACTTTCACGAATGGCTCGCTCCAGTTCGTTGAAGAAATCGACACCTTCCACCAGCGGCACTGAGCGTACCTGCGCCCCGGCAATCACCGCGCCATAAATATGGATCGGGTAAc < 1:4139599/149‑1 (MQ=255)
gggAAGCCGAGGATCATCATCTTCGGTTTCGGATAACTTTCACGAATGGCTCGCTCCAGTTCGTTGAAGAAATCGACACCTTCCACCAGCGGCACTGAGCGTACCTGCGCCCCGGCAATCACCGCGCCATAAATATGGATCGGGTAACt < 1:251299/149‑1 (MQ=255)
ggAAGCCGAGGATCATCATCTTCGGTTTCGGATAACTTTCACTAATGGCTCGCTCCAGTTCGTTGAAGAAATCGACACCTTCCACCAGCGGCACTGAGCGTACCTGCGCCCCGGCAATCACCGCGCCATAAATATGGATCGGGTAACtt < 2:2193109/149‑1 (MQ=255)
ggAAGCCGAGGATCATCATCTTCGGTTTCGGATAACTTTCACGAATGGCTCGCTCCAGTTCGTTGAAGAAATCGACACCTTCCACCAGCGGCACTGAGCGTACCTGCGCCCCGGCAATCACCGCGCCATAAATATGGATCGGGTAACtt > 1:45160/1‑149 (MQ=255)
aaGCCGAGGATCATCATCTTCGGTTTCGGATAACTTTCACGAATGGCTCGCTCCAGTTCGTTGAAGAAATCGACACCTTCCACCAGCGGCACTGAGCGTACCTGCGCCCCGGCAATCACCGCGCCATAAATATGGATCGGGTAACTTgg < 1:3156904/149‑1 (MQ=255)
aaGCCGAGGATCATCATCTTCGGTTTCGGATAACTTTCACGAATGGCTCGCTCCAGTTCGTTGAAGAAATCGACACCTTCCACCAGCGGCACTGAGCGTACCTGCGCCCCGGCAATCACCGCGCCATAAATATGGATCGGGTAACTTgg > 2:2778121/1‑149 (MQ=255)
aGCCGAGGATCATCATCTTCGGTTTCGGATAACTTTCACGAATGGCTCGCTCCAGTTCGTTGAAGAAATCGACACCTTCCACCAGCGGCACTGAGCGTACCTGCGCCCCGGCAATCACCGCGCCTTAAATATGGATCGGGTAACTTGGa < 1:3574595/149‑1 (MQ=255)
aGCCGAGGATCATCATCTTCGGTTTCGGATAACTTTCACGAATGGCTCGCTCCAGTTCGTTGAAGAAATCGACACCTTCCACCAGCGGCACTGAGCGTACCTGCGCCCCGGCAATCACCGCGCCATAAATATGGATCGGGTAACTTGGa > 1:3692613/1‑149 (MQ=255)
gCCGAGGATCATCATCTTCGGTTTCGGATAACTTTCACTAATGGCTCGCTCCAGTTCGTTGAAGAAATCGACACCTTCCACCAGCGGCACTGAGCGTACCTGCGCCCCGGCAATCACCGCGCCATAAATATGGATCGGGTAACTTGGAt < 2:2644428/149‑1 (MQ=255)
cGAGGATCATCATCTTCGGTTTCGGATAACTTTCACGAATGGCTCGCTCCAGTTCGTTGAAGAAATCGACACCTTCCACCAGCGGCACTGAGCGTACCTGCGCCCCGGCAATCACCGCGCCATAAAGATGGATCGGGTAACTTGGATTc > 2:4237109/1‑149 (MQ=255)
atcatcatcTTCGGTTTCGGATAACTTTCACGAATGGCTCGCTCCAGTTCGTTGAAGAAATCGACACCTTCCACCAGCGGCACTGAGCGTACCTGCGCCCCGGCAATCACCGCGCCATAAATATGGATCGGGTAACTTGGATTCGGCAc > 1:3917091/1‑149 (MQ=255)
atcatcatcTTCGGTTTCGGATAACTTTCACGAATGGCTCGCTCCAGTTCGTTGAAGAAATCGACACCTTCCACCAGCGGCACTGAGCGTACCTGCGCCCCGGCAATCACCGCGCCATAAATATGGATCGGGTAACTTGGATTCGGCAc > 2:864819/1‑149 (MQ=255)
tcatcTTCGGTTTCGGATAACTTTCACGAATGGCTCGCTCCAGTTCGTTGAAGAAATCGACACCTTCCACCAGCGGCACTGAGCGTACCTGCGCCCCGGCAATCACCGCGCCATAAATATGGATCGGGTAACTTGGATTCGGCACCAGc > 2:1576855/1‑149 (MQ=255)
atcTTCGGTTTCGGATAACTTTCACTAATGGCTCGCTCCAGTTCGTTGAAGAAATCGACACCTTCCACCAGCGGCACTGAGCGTACCTGCGCCCCGGCAATCACCGCGCCATAAATATGGATCGGGTAACTTGGATTCGGCACCAGCAc > 2:1364012/1‑149 (MQ=255)
atcTTCGGTTTCGGATAACTTTCACGAATGGCTCGCTCCAGTTCGTTGAAGAAATCGACACCTTCCACCAGCGGCACTGAGCGTACCTGCGCCCCGGCAATCACCGCGCCATAAATATGGATCGGGTAACTTGGATTCGGCACCAGCAc < 2:3530259/149‑1 (MQ=255)
tCGGTTTCGGATAACTTTCACGAATGGCTCGCTCCAGTTCGTTGAAGAAATCGACACCTTCCACCAGCGGCACTGAGCGTACCTGCGCCCCGGCAATCACCGCGCCATAAATATGGATCGGGTAACTTGGATTCGGCACCAGCACCgtg < 2:1976579/149‑1 (MQ=255)
cGGTTTCGGATAACTTTCACGAAGGGCTCGCTCCAGTTCGTTGAAGAAATCGACACCTTCCACCAGCGGCACTGAGCGTACCTGCGCCCCGGCAATCACCGCGCCATAAATATGGATCGGGTAACTTGGATTCGGCACCAGCACCgtgt < 2:2797562/149‑1 (MQ=255)
gTTTCGGATAACTTTCACGAATGGCTCGCTCCAGTTCGTTGAAGAAATCGACACCTTCCACCAGCGGCACTGAGCGTACCTGCGCCCCGGCAATCACCGCGCCATAAATATGGATCGGGTAACTTGGATTCGGCACCAGCACCGTGTCa > 2:3434176/1‑149 (MQ=255)
gTTTCGGATAACTTTCACGAATGGCTCGCTCCAGTTCGTTGAAGAAATCGACACCTTCCACCAGCGGCACTGAGCGTACCTGCGCCCCGGCAATCACCGCGCCATAAATATGGATCGGGTAACTTGGATTCGGCACCAGCACCGTGTCa > 2:1405836/1‑149 (MQ=255)
gTTTCGGATAACTTTCACGAATGGCTCGCTCCAGTTCGTTGAAGAAATCGACACCTTCCACCAGCGGCACTGAGCGTACCTGCGCCCCGGCAATCACCGCGCCATAAATATGGATCGGGTAACTTGGATTCGGCACCAGAACCGTGTCa > 2:3794596/1‑149 (MQ=255)
tCGGATAACTTTCACGAATGGCTCGCTCCAGTTCGTTGAAGAAATCGACACCTTCCACCAGCGGCACTGAGCGTACCTGCGCCCCGGCAATCACCGCGCCATAAATATGGATCGGGTAACTTGGATTCGGCACCAGCACCGTGTCACCa < 1:309687/149‑1 (MQ=255)
ggATAACTTTCACGAATGGCTCGCTCCAGTTCGTTGAAGAAATCGACACCTTCCACCAGCGGCACTGAGCGTACCTGCGCCCCGGCAATCACCGCGCCATAAATATGGATCGGGTAACTTGGATTCGGCACCAGCACCGTGTCACCATg > 1:4220963/1‑149 (MQ=255)
ggATAACTTTCACGAATGGCTCGCTCCAGTTCGTTGAAGAAATCGACACCTTCCACCAGCGGCACTGAGCGTACCTGCGCCCCGGCAATCACCGCGCCATAAATATGGATCGGGTAACTTGGATTCGGCACCAGCACCGTGTCACCATg > 2:4627562/1‑149 (MQ=255)
gATAACTTTCACGAATGGCTCGCTCCAGTTCGTTGAAGAAATCGACACCTTCCACCAGCGGCACTGAGCGTACCTGCGCCCCGGCAATCACCGCGCCATAAATATGGATCGGGTAACTTGGATTCGGCACCAGCACCGTGTCACCATGa > 1:2598188/1‑149 (MQ=255)
aTAACTTTCACTAATGGCTCGCTCCAGTTCGTTGAAGAAATCGACACCTTCCACCAGCGGCACTGAGCGTACCTGCGCCCCGGCAATCACCGCGCCATAAATATGGATCGGGTAACTTGGATTCGGCACCAGCACCGTGTCACCATGAt > 1:4053815/1‑149 (MQ=255)
aTAACTTTCACGAATGGCTCGCTCCAGTTCGTTGAAGAAATCGACACCTTCCACCAGCGGCACTGAGCGTACCTGCGCCCCGGCAATCACCGCGCCATAAATATGGATCGGGTAACTTGGATTCGGCACCAGCACCGTGTCACCATGAt < 1:2719017/149‑1 (MQ=255)
aTAACTTTCACGAATGGCTCGCTCCAGTTCGTTGAAGAAATCGACACCTTCCACCAGCGGCACTGAGCGTACCTGCGCCCCGGCAATCACCGCGCCATAAATATGGATCGGGTAACTTGGATTCGGCACCAGCACCGTGTCACCATGAt < 1:3119694/149‑1 (MQ=255)
tAACTTTCACGAATGGCTCGCTCCAGTTCGTTGAAGAAATCGACACCTTCCACCAGCGGCACTGAGCGTACCTGCGCCCCGGCAATCACCGCGCCATAAATATGGATCGGGTAACTTGGATTCGGCACCAGCACCGTGTCACCATGATc < 1:892577/149‑1 (MQ=255)
aCTTTCACGAATGGCTCGCTCCAGTTCGTTGAAGAAATCGACACCTTCCACCAGCGGCACTGAGCGTACCTGCGCCCCGGCAATCACCGCGCCATAAATATGGATCGGGTAACTTGGATTCGGCACCAGCACCGTGTCACCATGATCCa > 1:4017960/1‑149 (MQ=255)
cTTTCACGAATGGCTCGCTCCAGTTCGTTGAAGAAATCGACACCTTCCACCAGCGGCACTGAGCGTACCTGCGCCCCGGCAATCACCGCGCCATAAATATGGATCGGGTAACTTGGATTCGGCACCAGCACCGTGTCACCATGATCCAg < 1:4312717/149‑1 (MQ=255)
tttCACGAATGGCTCGCTCCAGTTCGTTGAAGAAATCGACACCTTCCACCAGCGGCACTGAGCGTACCTGCGCCCCGGCAATCACCGCGCCATAAATATGGATCGGGTAACTTGGATTCGGCACCAGCACCGTGTCACCATGATCCAGc > 1:124675/1‑149 (MQ=255)
tCACGAATGGCTCGCTCCAGTTCGTTGAAGAAATCGACACCTTCCACCAGCGGCACTGAGCGTACCTGCGCCCCGGCAATCACCGCGCCATAAATATGGATCGGGTAACTTGGATTCGGCACCAGCACCGTGTCACCATGATCCAGCGt < 2:3933241/149‑1 (MQ=255)
tCACGAATGGCTCGCTCCAGTTCGTTGAAGAAATCGACACCTTCCACCAGCGGCACTGAGCGTACCTGCGCCCCGGCAATCACCGCGCCATAAATATGGATCGGGTAACTTGGATTCGGCACCAGCACCGTGTCACCATGATCCAGCGt < 2:3229784/149‑1 (MQ=255)
tCACGAATGGCTCGCTCCAGTTCGTTGAAGAAATCGACACCTTCCACCAGCGGCACTGAGCGTACCTGCGCCCCGGCAATCACCGCGCCATAAATATGGATCGGGTAACTTGGATTCGGCACCAGCACCGTGTCACCATGATCCAGCGt > 2:4042194/1‑149 (MQ=255)
cGAATGGCTCGCTCCAGTTCGTTGAAGAAATCGACACCTTCCACCAGCGGCACTGAGCGTACCTGCGCCCCGGCAATCACCGCGCCATAAATATGGATCGGGTAACTTGGATTCGGCACCAGCACCGTGTCACCATGATCCAGCGTCGc < 1:2743469/149‑1 (MQ=255)
gAATGGCTCGCTCCAGTTCGTTGAAGAAATCGACACCTTCCACCAGCGGCACTGAGCGTACCTGCGCCCCGGCAATCACCGCGCCATAAATATGGATCGGGTAACTTGGATTCGGCACCAGCACCGTGTCACCATGATCCAGCGTCGcc < 2:2563295/149‑1 (MQ=255)
gAATGGCTCGCTCCAGTTCGTTGAAGAAATCGACACCTTCCACCAGCGGCACTGAGCGTACCTGCGCCCCGGCAATCACCGCGCCATAAATATGGATCGGGTAACTTGGATTCGGCACCAGCACCGTGTCACCATGATCCAGCGTCGcc > 2:1200494/1‑149 (MQ=255)
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TCGGCATAGGCCAGGTCATGGACCACCAGCACATCGTAGCGTTTCGCCAGCGCCACTACTTTTTCGAAGAACTCCAGTTCCACGCATTGCGCGGTTGGGTTTGACGGGAAGCCGAGGATCATCATCTTCGGTTTCGGATAACTTTCACGAATGGCTCGCTCCAGTTCGTTGAAGAAATCGACACCTTCCACCAGCGGCACTGAGCGTACCTGCGCCCCGGCAATCACCGCGCCATAAATATGGATCGGGTAACTTGGATTCGGCACCAGCACCGTGTCACCATGATCCAGCGTCGCC > CP009273/2491131‑2491427
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
