Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F218 I0 R1 1506 278.7 9275112 94.5% 8764980 150.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP009273 1,940,498 G→T 9.9% intergenic (‑61/‑10) yobI ← / → yebB uncharacterized protein/DUF830 family protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0092731,940,4980GT 9.9% 773.7 / 41.4 211intergenic (‑61/‑10)yobI/yebBuncharacterized protein/DUF830 family protein
Reads supporting (aligned to +/- strand):  ref base G (95/95);  new base T (12/9);  total (107/104)
Fisher's exact test for biased strand distribution p-value = 6.47e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01

Only 100 of 219 total aligned reads displayed.

CACAGTATAATTTATTCTACAGGTTATATTGGAAGCAAATATTTTAATATTACATATTCAGTGAAGAAATGCGTAATAAAAATATACATTGCGCCTCCTGAAAAAATAAATTTTTTATGCTATTACGTATATTTGTATCTATTTCAATGGAATGACAACGTGAATATTAATTACCCTGCTGAATATGAAATTGGAGATATCGTCTTTACATGTATAGGTGCTGCCTTATTTGGTCAAATATCAGCTGCATCAAATTGCTGGAGTAATCACGTCGGGATCATTATCGGTCATAACGGTGA  >  CP009273/1940349‑1940647
                                                                                                                                                     |                                                                                                                                                     
    gTATAATTTATTCTACAGGTTATATTGGAAGCAAATATTTTAATATTACATATTCAGTGAAGAAATGCGTAATAAAAATATACATTGCGCCTCCTGAAAAAATAAATTTTTTATGCTATTACGTATATTTGTATCTATTTCAATGGAATg                                                                                                                                                   >  1:870460/1‑150 (MQ=255)
       taATTTATTCTACAGGTTATATTGGAAGCAAATATTTTAATATTACATATTCAGTGAAGAAATGCGTAATAAAAATATACATTGCGCCTCCTGAAAAAATAAATTTTTTATGCTATTACGTATATTTGTATCTATTTCAATGGAATGACa                                                                                                                                                <  2:3725414/150‑1 (MQ=255)
        aaTTTATTCTACAGGTTATATTGGAAGCAAATATTTTAATATTACATATTCAGTGAAGAAATGCGTAATAAAAATATACATTGCGCCTCCTGAAAAAATAAATTTTTTATGCTATTACGTATATTTGTATCTATTTCAATGGAATGACaa                                                                                                                                               >  1:4204871/1‑150 (MQ=255)
         aTTTATTCTACAGGTTATATTGGAAGCAAATATTTTAATATTACATATTCAGTGAAGAAATGCGTAATAAAAATATACATTGCGCCTCCTGAAAAAATAAATTTTTTATGCTATTACGTATATTTGTATCTATTTCAATGTAATGACAAc                                                                                                                                              <  2:3426870/150‑1 (MQ=255)
         aTTTATTCTACAGGTTATATTGGAAGCAAATATTTTAATATTACATATTCAGTGAAGAAATGCGTAATAAAAATATACATTGCGCCTCCTGAAAAAATAAATTTTTTATGCTATTACGTATATTTGTATCTATTTCAATGGAATGACAAc                                                                                                                                              <  1:3757782/150‑1 (MQ=255)
          tttATTCTACAGGTTATATTGGACGCAAATATTTTAATATTACATATTCAGTGAAGAAATGCGTAATAAAAATATACATTGCGCCTCATGAAAAAATAAATTATTTATGCAATTACGTATATTTGTATCTATTTCAATGGAATGACAACg                                                                                                                                             >  2:929014/1‑150 (MQ=255)
                cTACAGGTTATATTGGAAGCAAATATTTTAATATTACATATTCAGTGAAGAAATGAGTAATAAAAATATACATTGCGCATCCTGAAAAAATAAATTTTTTATGATATTACGTATATTTGTATCTATTTCAATGGAATGACAACGTGAata                                                                                                                                       <  1:1813257/150‑1 (MQ=255)
                 tACAGGTTATATTGGAAGCAAATATTTTAATATTACATATTCAGTGAAGAAATGCGTAATAAAAATATACATTGCGCCTCCTGAAAAAATAAATTTTTTATGCTATTACGTATATTTGTATCTATTTCAATGTAATGACAACGTGAatat                                                                                                                                      <  2:1857523/150‑1 (MQ=255)
                    aGGTTATATTGGAAGCAAATATTTTAATATTACATATTCAGTGAAGAAATGCGTAATAAAAATATACATTGCGCCTCCTGAAAAAATAAATTTTTTATGCTATTACGTATATTTGTATCTATTTCAATGGAATGACAACGTGAATattaa                                                                                                                                   >  2:828252/1‑150 (MQ=255)
                      gTTATATTGGAAGCAAATATTTTAATATTACATATTCAGTGAAGAAATGCGTAATAAAAATATACATTGCGCCTCCTGAAAAAATAAATTTTTTATGCTATTACGTATATTTGTATCTATTTCAATGGAATGACAACGTGAATattaatt                                                                                                                                 <  2:1357734/150‑1 (MQ=255)
                       ttATATTGGAAGCAAATATTTTAATATTACATATTCAGTGAAGAAATGCGTAATAAAAATATACATTGCGCCTCCTGAAAAAATAAATTTTTTATGCTATTACGTATATTTGTATCTATTTCAATGGAATGACAACGTGAATattaatta                                                                                                                                >  2:715311/1‑150 (MQ=255)
                              ggAAGCAAATATTTTAATATTACATATTCAGTGAAGAAATGCGTAATAAAAATATACATTGCGCCTCCTGAAAAAATAAATTTTTTATGCTATTACGTATATTTGTATCTATTTCAATGGAATGACAACGTGAATATTAATTACCctgct                                                                                                                         <  1:4119652/150‑1 (MQ=255)
                                  gCAAATATTTTAATATTACATATTCAGTGAAGAAATGCGTAATAAAAATATACATTGCGCCTCCTGAAAAAATAAATTTTTTATGCTATTACGTATATTTGTATCTATTTCAATGGAATGACAACGTGAATATTAATTTCCCTGCTGAat                                                                                                                     <  1:3658236/150‑1 (MQ=255)
                                  gCAAATATTTTAATATTACATATTCAGTGAAGAAATGCGTAATAAAAATATACATTGCGCCTCCTGAAAAAATAAATTTTTTATGCTATTACGTATATTTGTATCTATTTCAATGGAATGACAACGTGAATATTAATTACCCTGCTGAat                                                                                                                     >  2:4239059/1‑150 (MQ=255)
                                   cAAATATTTTAATATTACATATTCAGTGAAGAAATGCGTAATAAAAATATACATTGCGCCTCCTGAAAAAATAAATTTTTTATGCTATTACGTATATTTGTATCTATTTCAATGGAATGACAACGTGAATATTAATTACCCTGCTGAata                                                                                                                    >  1:2190345/1‑150 (MQ=255)
                                    aaaTATTTTAATATTACATATTCAGTGAAGAAATGCGTAATAAAAATATACATTGCGCCTCCTGAAAAAATAAATTTTTTATGCTATTACGTATATTTGTATCTATTTCAATGGAATGACAACGTGAATATTAATTACCCTGCTGAatat                                                                                                                   <  2:2691043/150‑1 (MQ=255)
                                      atatTTTAATATTACATATTCAGTGAAGAAATGCGTAATAAAAATATACATTGCGCCTCCTGAAAAAATAAATTTTTTATGCTATTACGTAGATTTGTATCTATTTCAATGGAATGACAACGTGAATATTAATTACCCTGCTGAATATGa                                                                                                                 >  1:3485767/1‑150 (MQ=255)
                                        atTTTAATATTACATATTCAGTGAAGAAATGCGTAATAAAAATATACATTGCGCCTCCTGAAAAAATAAATTTTTTATGCTATTACGTATATTTGTATCTATTTCAATGGAATGACAACGTGAATATTAATTACCCTGCTGAATATGaaa                                                                                                               <  2:3909994/150‑1 (MQ=255)
                                          tttAATATTACATATTCAGTGAAGAAATGCGTAATAAAAATATACATTGCGCCTCCTGAAAAAATAAATTTTTTATGCTATTACGTATATTTGTATCTATTTCAATGGAATGACAACGTGAATATTAATTACCCTGCTGAATATGAAAtt                                                                                                             <  2:3783007/150‑1 (MQ=255)
                                            tAATATTACATATTCAGTGAAGAAATGCGTAATAAAAATATACATTGCGCCTCCTGAAAAAATAAATTTTTTATGCTATTACGTATATTTGTATCTATTTCAATGGAATGACAACGTGAATATTAATTACCCTGCTGAATATGAAATTgg                                                                                                           >  1:2985528/1‑150 (MQ=255)
                                            tAATATTACATATTCAGTGAAGAAATGCGTAATAAAAATATACATTGCGCCTCCTGAAAAAATAAATTTTTTATGCTATTACGTATATTTGTATCTATTTCAATGGAATGACAACGTGAATATTAATTACCCTGCTGAATATGAAATTgg                                                                                                           <  1:2008923/150‑1 (MQ=255)
                                               tatTACATATTCAGTGAAGAAATGCGTAATAAAAATATACATTGCACCTCCTGAAAAAATAAATTTTTTATGCTATTACGTATATTTGTATCTATTTCAATGGAATGACAACGTGAATATTAATTACCCTGCTGAATATGAAATTGgaga                                                                                                        <  1:532314/150‑1 (MQ=255)
                                                 ttACATATTCAGTGAAGAAATGCGTAATAAAAATATACATTGCGCCTCCTGAAAAAATAAATTTTTTATGCTATTACGTATATTTGTATCTATTTCAATGGAATGACAACGTGAATATTAATTACCCTGCTGAATATGAAATTGGAGata                                                                                                      >  2:958185/1‑150 (MQ=255)
                                                  tACATATTCAGTGAAGAAATGCGTAATAAAAATATACATTGCGCCTCCTGAAAAAATAAATTTTTTATGCTATTACGTATAATTGTATCTATTTCAATGGAATGACAACGTGAATATTAATTACCCTGCTGAATATGAAATTGGAGatat                                                                                                     <  2:731149/150‑1 (MQ=255)
                                                      tatTCAGTGAAGAAATGCGTAATAAAAATATACATTGCGCCTCCTGAAAAAATAAATTTTTTATGCTATTACGTATATTTGTATCTATTTCAATGGAATGACAACGTGAATATTAATTACCCTGCTGAATATGAAATTGGAGATATCGTc                                                                                                 <  2:3472629/150‑1 (MQ=255)
                                                      tatTCAGTGAAGAAATGCGTAATAAAAATATACATTGCGCCTCCTGAAAAAATAAATTTTTTATGCTATTACGTATATTTGTATCTATTTCAATGGAATGACAACGTGAATATTAATTACCCTGCTGAATATGAAATTGGAGATATCGTc                                                                                                 >  1:4525884/1‑150 (MQ=255)
                                                      tatTCAGTGAAGAAATGCGTAATAAAAATATACATTGCGCCTCCTGAAAAAATAAATTTTTTATGCTATTACGTATATTTGTATCTATTTCAATGGAATGACAACGTGAATATTAATTACCATGCTGAATATGAAATTGGAGATATCGTc                                                                                                 <  1:1283204/150‑1 (MQ=255)
                                                       atTCAGTGAAGAAATGCGTAATAAAAATATACATTGCGCCTCCTGAAAAAATAAATTTTTTATGCTATTACGTATATTTGTATCTATTTCAATGGAATGACAACGTGAATATTAATTACCCTGCTGAATATGAAATTGGAGATATCGTCt                                                                                                <  2:2644598/150‑1 (MQ=255)
                                                       atTCAGTGAAGAAATGCGTAATAAAAATATACATTGCGCCTCCTGAAAAAATAAATTTTTTATGCTATTACGTATATTTGTATCTATTTCAATGGAATGACAACGTGAATATTAATTACCCTGCTGAATATGAAATTGGAGATATCGTCt                                                                                                >  1:1434240/1‑150 (MQ=255)
                                                             tGAAGAAATGCGTAATAAAAATATACATTGCGCCTCCTGAAAAAATAAATTTTTTATGCTATTACGTATATTTGTATCTATTTCAATGGAATGACAACGTGAATATTAATTACCCTGCTGAATATGAAATTGGAGATATCGTCTTTACAt                                                                                          <  2:2349486/150‑1 (MQ=255)
                                                             tGAAGAAATGCGTAATAAAAATATACATTGCGCCTCCTGAAAAAATAAATTTTTTATGCTATTACGTATATTTGTATCTATTTCAATGGAATGACAACGTGAATATTAATTACCCTGCTGAATATGAAATTGGAGATATCGTCTTTACAt                                                                                          >  2:362359/1‑150 (MQ=255)
                                                              gaagaaATGCGTAATAAAAATATACATTGCGCCTCCTGAAAAAATAAATTTTTTATGCTATTACGTATATTTGTATCTATTTCAATGGAATGACAACGTGAATATTAATTACCCTGCTGAATATGAAATTGGAGATATCGTCTTTACATg                                                                                         >  2:4595782/1‑150 (MQ=255)
                                                              gaagaaATGCGTAATAAAAATATACATTGCGCCTCCTGAAAAAATAAATTATTTATGCTATTACGTATATTTTTATCTATTTCAATGTAATGACAAAGTGAATAATAATTAACATGCTGAATATGAAATTGGAGATATCGTCATTACATg                                                                                         >  1:3095367/1‑150 (MQ=255)
                                                               aagaaATGCGTAATAAAAATATACATTGCGCCTCCTGAAAAAATAAATTTTTTATGCTATTACGTATATTTGTATCTATTTCAATGGAATGACAACGTGAATATTAATTACCCTGCTGAATATGAAATTGGAGATATCGTCTTTACATGt                                                                                        >  1:2608305/1‑150 (MQ=255)
                                                               aagaaATGCGTAATAAAAATATACATTGCGCCTCCTGAAAAAATAAATTTTTTATGCTATTACGTATATTTGTATCTATTTCAATGGAATGACAACGTGAATATTAATTACCCTGCTGAATATGAAATTGGAGATATCGTCTTTACATGt                                                                                        >  1:2607860/1‑150 (MQ=255)
                                                                agaaATGCGTAATAAAAATATACATTGCGCCTCCTGAAAAAATAAATTTTTTATGCTATTACGTATATTTGTATCTATTTCAATGTAATGACAACGTGAATATTAATTACCCTGCTGAATATGAAATTGGAGATATCGTCTTTACATGta                                                                                       >  2:4253723/1‑150 (MQ=255)
                                                                 gaaATGCGTAATAAAAATATACATTGCGCCTCCTGAAAAAATAAATTTTTTATGCTATTACGTATATTTGTATCTATTTCAATGGAATGACAACGTGAATATTAATTACCCTGCTGAATATGAAATTGGAGATATCGTCTTTACATGtat                                                                                      <  1:2289664/150‑1 (MQ=255)
                                                                 gaaATGCGTAATAAAAATATACATTGCGCCTCCTGAAAAAATAAATTTTTTATGCTATTACGTATATTTGTATCTATTTCAATGGAATGACAACGTGAATATTAATTACCCTGCTGAATATGAAATTGGAGATATCGTCTTTACATGtat                                                                                      <  1:2755902/150‑1 (MQ=255)
                                                                  aaaTGCGTAATAAAAATATACATTGCGCCTCCTGAAAAAATAAATTTTTTATGCTATTACGTATATTTGTATCTATTTCAATGGAATGACAACGTGAATATTAATTACCCTGCTGAATATGAAATTGGAGATATCGTCTTTACATGtata                                                                                     <  1:1594497/150‑1 (MQ=255)
                                                                  aaaTGCGTAATAAAAATATACATTGCGCCTCCTGAAAAAATAAATTTTTTATGCTATTACGTATATTTGTATCTATTTCAATGGAATGACAACGTGAATATTAATTACCCTGCTGAATATGAAATTGGAGATATCGTCTTTACATGtata                                                                                     >  2:4050864/1‑150 (MQ=255)
                                                                       cGTAATAAAAATATACATTGCGCCTCCTGAAAAAATAAATTTTTTATGCTATTACGTATATTTGTATCTATTTCAATGTAATGACAACGTGAATATTAATTACCCTGCTGAATATGAAATTGGAGATATCGTCTTTACATGTATAGGtgc                                                                                >  2:416806/1‑150 (MQ=255)
                                                                       cGTAATAAAAATATACATTGCGCCTCCTGAAAAAATAAATTTTTTATGCTATTACGTATATTTGTATCTATTTCAATGTAATGACAACGTGAATATTAATTACCCTGCTGAATATGAAATTGGAGATATCGTCTTTACATGTATAGGtgc                                                                                >  2:1726518/1‑150 (MQ=255)
                                                                         taataaAAATATACATTGCGCCTCCTGAAAAAATAAATTTTTTATGCTATTACGTATATTTGTATCTATTTCAATGGAATGACAACGTGAATATTAATTACCCTGCTGAATATGAAATTGGAGATATCGTCTTTACATGTATAGGtgctg                                                                              <  2:4434263/150‑1 (MQ=255)
                                                                         taataaAAATATACATTGCGCCTCCTGAAAAAATAAATTTTTTATGCTATTACGTATATTTGTATCTATTTCAATGGAATGACAACGTGAATATTAATTACCCTGCTGAATATGAAATTGGAGATATCGTCTTTACATGTATAGGtgctg                                                                              <  1:2813840/150‑1 (MQ=255)
                                                                           ataaAAATATACATTGCGCCTCCTGAAAAAATAAATTTTTTATGCTATTACGTATATTTGTATCTATTTCAATGGAATGACAACGTGAATATTAATTACCCTGCTGAATATGAAATTGGAGATATCGTCTTTACATGTATAGGTGCTGcc                                                                            >  2:2817333/1‑150 (MQ=255)
                                                                            taaAAATATACATTGCGCCTCCTGAAAAAATAAATTTTTTATGCTATTACGTATATTTGTATCTATTTCAATGGAATGACAACGTGAATATTAATTACCCTGCTGAATATGAAATTGGAGATATCGTCTTTACATGTATAGGTGCTGCCt                                                                           >  1:3454673/1‑150 (MQ=255)
                                                                             aaaaaTATACATTGCGCCTCCTGAAAAAATAAATTTTTTATGCTATTACGTATATTTGTATCTATTTCAATGGAATGACAACGTGAATATTAATTACCCTGCTGAATATGAAATTGGAGATATCGTCTTTACATGTATAGGTGCTGCCtt                                                                          <  2:2206013/150‑1 (MQ=255)
                                                                              aaaaTATACATTGCGCCTCCTGAAAAAATAAATTTTTTATGCTATTACGTATATTTGTATCTATTTCAATGGAATGACAACGTGAATATTAATTACACTGCTGAATATGAAATTGGAGATATCGTCTTTACATGTATAGGTGCTGCCTTa                                                                         >  2:3355143/1‑150 (MQ=255)
                                                                              aaaaTATACATTGCGCCTCCTGAAAAAATAAATTTTTTATGCTATTACGTATATTTGTATCTATTTCAATGGAATGACAACGTGAATATTAATTACACTGCTGAATATGAAATTGGAGATATCGTCTGTACATGTATAGGTGCTGCCTTa                                                                         >  2:3657560/1‑150 (MQ=255)
                                                                               aaaTATACATTGCGCCTCCTGAAAAAATAAATTTTTTATGCTATTACGTATATTTGTATCTATTTCAATGGAATGACAACGTGAATATTAATTACCCTGCTGAATATGAAATTGGAGATATCGTCTTTACATGTATAGGTGCTGCCTTAt                                                                        <  1:1166566/150‑1 (MQ=255)
                                                                                aaTATACATTGCGCCTCCTGAAAAAATAAATTTTTTATGCTATTACGTATATTTGTATCTATTTCAATGGAATGACAACGTGAATATTAATTACCCTGCTGAATATGAAATTGGAGATATCGTCTTTACATGTATAGGTGCTGCCTTAtt                                                                       >  2:2907871/1‑150 (MQ=255)
                                                                                 atatACATTGCGCCTCCTGAAAAAATAAATTTTTTATGCTATTACGTATATTTGTATCTATTTCAATGGAATGACAACGTGAATATTAATTACCCTGCTGAATATGAAATTGGAGATATCGTCTTAACATGTATAGGTGCTGCCTTAttt                                                                      >  2:1667947/1‑150 (MQ=255)
                                                                                  tataCATTGCGCCTCCTGAAAAATTAAATTTTTTATGCTATTACGTATATTTGTATCTATTTCAATGGAATGACAACGTGAATATTAATTACCCTTCTGAATATGAAATTGGAGATATCGTCTTTACATGTATAGGTGCTGCCTTATTTg                                                                     <  2:27364/150‑1 (MQ=255)
                                                                                  tataCATTGCGCCTCCTGAAAAAATAAATTTTTTATGCTATTACGTATATTTGTATCTATTTCAATGGAATGACAACGTGAATATTAATTACCCTGCTGAATATGAAATTGGAGATATCGTCTTTACATGTATAGGTGCTGCCTTATTTg                                                                     >  1:2443362/1‑150 (MQ=255)
                                                                                   ataCATTGCGCCTCCTGAAAAAATAAATTTTTTATGCTATTACGTATATTTGTATCTATTTCAATGGAATGACAACGTGAATATTAATTACCCTGCTGAATATGAAATTGGAGATATCGTCTTTACATGTATAGGTGCTGCCTTATTTgg                                                                    <  2:4120224/150‑1 (MQ=255)
                                                                                    taCATTGCGCCTCCTGAAAAAATAAATTTTTTATGCTATTACGTATATTTGTATCTATTTCAATGGAATGACAACGTGAATATTAATTACCCTGCTGAATATGAAATTGGAGATATCGTCTTTACATGTATAGGTGCTGCCTTATTTGGt                                                                   <  2:628890/150‑1 (MQ=255)
                                                                                      cATTGCGCCTCCTGAAAAAATAAATTTTTTATGCTATTACGTATATTTGTATCTATTTCAATGGAATGACAACGTGAATATTAATTACCCTGCTGAATATGAAATTGGAGATATCGTCTTTACATGTATAGGTGCTGCCTTATTTGGTCa                                                                 >  2:1519377/1‑150 (MQ=255)
                                                                                      cATTGCGCCTCCTGAAAAAATAAATTTTTTATGCTATTACGTATATTTGTATCTATTTCAATGGAATGACAACGTGAATATTAATTACCCTGCTGAATATGAAATTGGAGATATCGTCTTTACATGTATAGGTGCTGCCTTATTTGGTCa                                                                 <  2:1714058/150‑1 (MQ=255)
                                                                                       aTTGCGCCTCCTGAAAAAATAAATTTTTTATGCTATTACGTATATTTGTATCTATTTCAATGGAATGACAACGTGAATATTAATTACCCTGCTGAATATGAAATTGGAGATATCGTCTTTACATGTATAGGTGCTGCCTTATTTGGTCaa                                                                <  1:2449351/150‑1 (MQ=255)
                                                                                       aTTGCGCCTCCTGAAAAAATAAATTTTTTAGGCTATTACGTATATTTGTATCTATTTCAATGGAATGACAACGTGAATATTAATTACCCTGCTGAATATGAAATTGGAGATATCGTCTTTACATGTATAGGTGCTGCCTTATTTGGTCaa                                                                >  1:3889943/1‑150 (MQ=255)
                                                                                         tGCGCCTCCTGAAAAAATAAATTTTTTATGCTATTACGTATATTTGTATCTATTTCAATGGAATGACAACGTGAATATTAATTACCCTGCTGAATATGAAATTGGAGATATCGTCTTTACATGTATAGGTGCTGCCTTATTTGGTCAAat                                                              >  2:4389025/1‑150 (MQ=255)
                                                                                         tGCGCCTCCTGAAAAAATAAATTTTTTATGCTATTACGTATATTTGTATCTATTTCAATGGAATGACAACGTGAATATTAATTACCCTGCTGAATATGAAATTGGAGATATCGTCTTTACATGTATAGGTGCTGCCTTATTTGGTCAAat                                                              <  2:4588984/150‑1 (MQ=255)
                                                                                             cctcctGAAAAAATAAATTTTTTATGCTATTACGTATATTTGTATCTATTTCAATGGAATGACAACGTGAATATTAATTACCCTGCTGAATATGAAATTGGAGATATCGTCTTTACATGTATAGGTGCTGCCTTATTTGGTCAAATATCa                                                          <  2:240728/150‑1 (MQ=255)
                                                                                             cctcctGAAAAAATAAATTTTTTATGCTATTACGTATATTTGTATCTATTTCAATGGAATGACAACGTGAATATTAATTACCCTGCTGAATATGAAATTGGAGATATCGTCTTTACATGTATAGGTGCTGCCTTATTTGGTCAAATATCa                                                          <  2:1014958/150‑1 (MQ=255)
                                                                                              ctcctGATAAAATAAATTTTTTATGCTATTACGTATATTTGTATCTATTTCTATGGAATGACAACGTGAATATTAATTACCCTGCTGAATATGATATTGGAGATATCGTCTTTACATGTATAGGTGCTGCCTTATTTGGTCAAATATCAg                                                         <  1:4156034/150‑1 (MQ=255)
                                                                                                  tGAAAAAATAAATTTTTTATGCTATTACGTATATTTGTATCTATTTCAATGGAATGACAACGTGAATATTAATTACCCTGCTGAATATGAAATTGGAGATATCGTCTTTACATGTATAGGTGCTGCCTTATTTGGTCAAATATCAGCTGc                                                     >  1:124581/1‑150 (MQ=255)
                                                                                                    aaaaaaTAAATTTTTTATGCTATTACGTATATTTGTATCTATTTCAATGGAATGACAACGTGAATATTAATTACCCTGCTGAATATGAAATTGGAGATATCGTCTTTACATGTATAGGTGCTGCCTTATTTGGTCAAATATCAGCTGCAt                                                   <  1:2469396/150‑1 (MQ=255)
                                                                                                    aaaaaaTAAATTTTTTATGCTATTACGTATATTTGTATCTATTTCAATGGAATGACAACGTGAATATTAATTACCCTGCTGAATATGAAATTGGAGATATCGTCTTTACATGTATAGGTGCTGCCTTATTTGGTCAAATATCAGCTGCAt                                                   <  1:932219/150‑1 (MQ=255)
                                                                                                       aaataaatTTTTTATGCTATTACGTATATTTGTATCTATTTCAATGGAATGACAACGTGAATATTAATTACCCTGCTGAATATGAAATTGGAGATATCGTCTTTACATGTATAGGTGCTGCCTTATTTGGTCAAATATCAGCTGCATCaa                                                <  2:497575/150‑1 (MQ=255)
                                                                                                        aataaatTTTTTATGCTATTACGTATATTTGTATCTATTTCAATGGAATGACAACGTGAATATTAATTACCCTGCTGAATATGAAATTGGAGATATCGTCTTTACATGTATAGGTGCTGCCTTATTTGGTCAAATATCAGCTGCATCaaa                                               <  1:2882042/150‑1 (MQ=255)
                                                                                                         ataaatTTTTTATGCTATTACGTATATTTGTATCTATTTCAATGGAATGACAACGTGAATATTAATTACCCTGCTGAATATGAAATTGGAGATATCGTCTTTACATGTATAGGTGCTGCCTTATTTGGTCAAATATCAGCTGCATCAAAt                                              >  1:2329784/1‑150 (MQ=255)
                                                                                                         ataaatTTTTTATGCTATTACGTATATTTGTATCTATTTCAATGGAATGACAACGTGAATATTAATTACCCTGCTGAATATGAAATTGGAGATATCGTCTTTACATGTATAGGTGCTGCCTTATTTGGTCAAATATCAGCTGCATCAAAt                                              <  1:329782/150‑1 (MQ=255)
                                                                                                         ataaatTTTTTATGCTATTACGTATATTTGTATCTATTTCAATGGAATGACAACGTGAATATTAATTACCCTGCTGAATATGAAATTGGAGATATCGTCTTTACATGTATAGGTGCTGCCTTATTTGGTCAAATATCAGCTGCATCAAAt                                              <  1:1113961/150‑1 (MQ=255)
                                                                                                         ataaatTTTTTATGCTATTACGTATATTTGTATCTATTTCAATGGAATGACAACGTGAATATTAATTACCCTGCTGAATATGAAATTGGAGATATCGTCTTTACATGTATAGGTGCTGCCTTATTTGGTCAAATATCAGCTGCATCAAAt                                              <  1:3471575/150‑1 (MQ=255)
                                                                                                         ataaatTTTTTATGCTATTACGTATATTTGTATCTATTTCAATGGAATGACAACGTGAATATTAATTACCCTGCTGAATATGAAATTGGAGATATCGTCTTTACATGTATAGGTGCTGCCTTATTTGGTCAAATATCAGCTGCATCAAAt                                              >  1:462900/1‑150 (MQ=255)
                                                                                                                ttttATGCTATTACGTATATTTGTATCTATTTCAATGGAATGACAACGTGAATATTAATTACCCTGCTGAATATGAAATTGGAGATATCGTCTTTACATGTATAGGTGCTGCCTTATTTGGTCAAATATCAGCTGCATCAAATTGCTGGa                                       >  2:3080603/1‑150 (MQ=255)
                                                                                                                ttttATGCTATTACGTATATTTGTATCTATTTCAATGGAATGACAACGTGAATATTAATTACCCTGCTGAATATGAAATTGGAGATATCGTCTTTACATGTATAGGTGCTGCCTTATTTGGTCAAATATCAGCTGCATCAAATTGCTGGa                                       >  2:3290358/1‑150 (MQ=255)
                                                                                                                 tttATGCTATTACGTATATTTGTATCTATTTCAATGGAATGACAACGTGAATATTAATTACCCTGCTGAATATGAAATTGGAGATATCGTCTTTACATGTATAGGTGCTGCCTTATTTGGTCAAATATCAGCTGCATCAAATTGCTGGAg                                      >  1:3186457/1‑150 (MQ=255)
                                                                                                                  ttATGCTATTACGTATATTTGTATCTATTTCAATGGAATGACAACGTGAATATTAATTACCCTGCTGAATATGAAATTGGAGATATCGTCTTTACATGTATAGGTGCTGCCTTATTTGGTCAAATATCAGCTGCATCAAATTGCTGGAGt                                     <  2:608706/150‑1 (MQ=255)
                                                                                                                     tGCTATTACGTATATTTGTATCTATTTCAATGGAATGACAACGTGAATATTAATTACCCTGCTGAATATGAAATTGGAGATATCGTCTTTACATGTATAGGTGCTGCCTTATTTGGTCAAATATCAGCTGCATCAAATTGCTGGAGTAAt                                  >  1:1004242/1‑150 (MQ=255)
                                                                                                                      gCTATTACGTATATTTGTATCTATTTCAATGTAATGACAACGTGACTATTAATTACCCTGCTGAATATGAAATTGGAGATATCGTCTTTACATGTATAGGTGCTGCCTTATTTGGTCAAATATCAGCTGCATCAAATTGCTGGAGTAATc                                 <  1:4604635/150‑1 (MQ=255)
                                                                                                                      gCTATTACGTATATTTGTATCTATTTCAATGGAATGACAACGTGAATATTAATTACCCTGCTGAATATGAAATTGGAGATATCGTCTTTACATGTATAGGTGCTGCCTTATTTGGTCAAATATCAGCTGCATCAAATTGCTGGAGTAATc                                 <  2:1800287/150‑1 (MQ=255)
                                                                                                                       cTATTACGTATATTTGTATCTATTTCAATGTAATGACAACGTGAATATTAATTACCCTGCTGAATATGAAATTGGAGATATCGTCTTTACATGTATAGGTGCTGCCTTATTTGGTCAAATATCAGCTGCATCAAATTGCTGGAGTAATCa                                >  2:1567278/1‑150 (MQ=255)
                                                                                                                         aTTACGTATATTTGTATCTATTTCAATGTAATGACAACGTGAATATTAATTACCCTGCTGAATATGAAATTGGAGATATCGTCTTTACATGTATAGGTGCTGCCTTATTTGGTCAAATATCAGCTGCATCAAATTGCTGGAGTAATCACg                              >  2:3710605/1‑150 (MQ=255)
                                                                                                                          ttACGTATATTTGTATCTATTTCAATGGAATGACAACGTGAATATTAATTACCCTGCTGAATATGAAATTGGAGATATCGTCTTTACATGTATAGGTGCTGCCTTATTTGGTCAAATATCAGCTGCATCAAATTGCTGGAGTAATCACGt                             <  1:3568082/150‑1 (MQ=255)
                                                                                                                           tACGTAGATTTGTATCTATTTCCTTGGAATGACCTCGTGAATTTTAATTACCCTGCTGTATATGACAGTGGAGTTATCGTCTTTAGATGTATTGGTGGTGCCTTTTTTGGTCAAATATCAGCTGCATCAAATTGCTGGAGTAATCACGTc                            <  2:1414025/150‑1 (MQ=255)
                                                                                                                                     tGTATCTATTTCAATGGAATGACAACGTGAATATTAATTACCCTGCTGAATATGAAATTGGAGATATCGTCTTTACATGTATAGGTGCTGCCTTATTTGGTCAAATATCAGCTGCATCAAATTGCTGGAGTAATCACGTCGGGATCATTa                  >  2:2436645/1‑150 (MQ=255)
                                                                                                                                      gTATCTATTTCAATGTAATGACAACGTGAATATTAATTACCCTGCTGAATATGAAATTGGAGATATCGTCTTTACATGTATAGGTGCTGCCTTATTTGGTCAAATATCAGCTGCATCAAATTGCTGGAGTAATCACGTCGGGATCATTAt                 >  2:2485278/1‑150 (MQ=255)
                                                                                                                                          cTATTTCAATGGAATGACAACGTGAATATTAATTACCCTGCTGAATATGAAATTGGAGATATCGTCTTTACATGTATAGGTGCTGCCTTATTTGGTCAAATATCAGCTGCATCAAATTGCTGGAGTAATCACGTCGGGATCATTATCGGt             >  1:1565314/1‑150 (MQ=255)
                                                                                                                                           tATTTCAATGGAATGACAACGTGAATATTAATTACCCTGCTGAATATGAAATTGGAGATATCGTCTTTACATGTATAGGTGCTGCCTTATTTGGTCAAATATCAGCTGCATCAAATTGCTGGAGTAATCACGTCGGGATCATTATCGGTc            <  2:3993331/150‑1 (MQ=255)
                                                                                                                                           tATTTCAATGGAATGACAACGTGAATATTAATTACCCTGCTGAATATGAAATTGGAGATATCGTCTTTACATGTATAGGTGCTGCCTTATTTGGTCAAATATCAGCTGCATCAAATTGCTGGAGTAATCACGTCGGGATCATTATCGGTc            <  2:3993329/150‑1 (MQ=255)
                                                                                                                                            aTTTCAATGGAATGACAACGTGAATATTAATTACCCTGCTGAATATGAAATTGGAGATATCGTCTTTACATGTATAGGTGCTGCCTTATTTGGTCAAATATCAGCTGCATCAAATTGCTGGAGTAATCACGTCGGGATCATTATCGGTCa           <  2:1199508/150‑1 (MQ=255)
                                                                                                                                             tttCAATGGAATGACAACGTGAATATTAATTACCCTGCTGAATATGAAATTGGAGATATCGTCTTTACATGTATAGGTGCTGCCTTATTTGGTCAAATATCAGCTGCATCAAATTGCTGGAGTAATCACGTCGGGATCATTATCGGTCAt          >  1:2355182/1‑150 (MQ=255)
                                                                                                                                              ttCAATGGAATGACAACGTGAATATTAATTACCCTGCTGAATATGAAATTGGAGATATCGTCTTTACATGTATAGGTGCTGCCTTATTTGGTCAAATATCAGCTGCATCAAATTGCTGGAGTAATCACGTCGGGATCATTAACGGTCATa         >  1:2689613/1‑150 (MQ=255)
                                                                                                                                                cAATGGAATGACAACGTGAATATTAATTACCCTGCTGAATATGAAATTGGAGATATCGTCTTTACATGTATAGGTGCTGCCTTATTTGGTCAAATATCAGCTGCATCAAATTGCTGGAGTAATCACGTCGGGATCATTATCGGTCATAAc       >  1:3199852/1‑150 (MQ=255)
                                                                                                                                                  aTGGAATGACAACGTGAATATTAATTACCCTGCTGAATATGAAATTGGAGATATCGTCTTTACATGTATAGGTGCTGCCTTATTTGGTCAAATATCAGCTGCATCAAATTGCTGGAGTAATCACGTCGGGATCATTATCGGTCATAACgg     <  1:1630084/150‑1 (MQ=255)
                                                                                                                                                   tGGAATGACAACGTGAATATTAATTACCCTGCTGAATATGAAATTGGAGATATCGTCTTTACATGTATAGGTGCTGCCTTATTTGGTCAAATATCAGCTGCATCAAATTGCTGGAGTAATCACGTCGGGATCATTATCGGTCATAACGGt    >  1:1222445/1‑150 (MQ=255)
                                                                                                                                                    ggAATGACAACGTGAATATTAATTACCCTGCTGAATATGAAATTGGAGATATCGTCTTTACATGTATAGGTGCTGCCTTATTTGGTCAAATATCAGCTGCATCAAATTGCTGGAGTAATCACGTCGGGATCATTATCGGTCATAACGGTg   >  2:4342009/1‑150 (MQ=255)
                                                                                                                                                    ggAATGACAACGTGAATATTAATTACCCTGCTGAATATGAAATTGGAGATATCGTCTTTACATGTATAGGTGCTGCCTTATTTGGTCAAATATCAGCTGCATCAAATTGCTGGAGTAATCACGTCGGGATCATTATCGGTCATAACGGTg   <  2:2037535/150‑1 (MQ=255)
                                                                                                                                                     gAATGACAACGTGAATATTAATTACCCTGCTGAATATGAAATTGGAGATATCGTCTTTACATGTATAGGTGCTGCCTTATTTGGTCAAATATCAGCTGCATCAAATTGCTGGAGTAATCACGTCGGGATCATTATCGGTCATAACGGTGa  <  2:374629/150‑1 (MQ=255)
                                                                                                                                                     |                                                                                                                                                     
CACAGTATAATTTATTCTACAGGTTATATTGGAAGCAAATATTTTAATATTACATATTCAGTGAAGAAATGCGTAATAAAAATATACATTGCGCCTCCTGAAAAAATAAATTTTTTATGCTATTACGTATATTTGTATCTATTTCAATGGAATGACAACGTGAATATTAATTACCCTGCTGAATATGAAATTGGAGATATCGTCTTTACATGTATAGGTGCTGCCTTATTTGGTCAAATATCAGCTGCATCAAATTGCTGGAGTAATCACGTCGGGATCATTATCGGTCATAACGGTGA  >  CP009273/1940349‑1940647

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A