Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A3 F9 I0 R1
|
113 |
83.2 |
1840812 |
91.6% |
1686183 |
224.4 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
1,058,486 |
T→C |
19.2% |
S135P (TCG→CCG) |
torC → |
trimethylamine N‑oxide (TMAO) reductase I, cytochrome c‑type subunit |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,058,486 | 0 | T | C | 19.2%
| 120.7
/ 6.5
| 70 | S135P (TCG→CCG) | torC | trimethylamine N‑oxide (TMAO) reductase I, cytochrome c‑type subunit |
| Reads supporting (aligned to +/- strand): ref base T (38/14); new base C (2/12); total (41/29) |
| Fisher's exact test for biased strand distribution p-value = 1.03e-04 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
GTGTATGAAGAATATAAACAGTCGGTGCATTTCCAGAA‑CGCCTCCGGCGTGCGAGCTGAATGCCATGACTGTCATATCCCGCCGGATA‑TTCCAGGCATGGTGAAGCGCAAACTGG‑AAGCGAGCAATGATATCTACCAGACCTTTATTGCTCACTCCATTGATACACCTGAAAAATTCGAAGCCAAACGC‑GCGGAACTTGCCGAGCGTGAATGGGCGCGAAT‑GAAAGAAAACA‑ACTCGGCAACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGTCATAAAGGTATTGCCCACCAGTTACCGGATATGAGTAGCGGCTTCCGTAAGCAGTTCGATGAGCTGCGCGCCAGTGCTAATGACAGTGGTGACACGCTGTACTCTA > NC_000913/1058252‑1058708
|
gtgtATGAAGAATATAAACAGTCGGTGCATTTCCAGAA‑CGCCTCCGGCGTGCGAGCTGAATGCCATGACTGTCATATCCCGCCGGATA‑TTCCAGGCATGGTGCAGCGCAAACTGG‑AAGCGAGCAATGATATCTACCAGACCTTTATTGCTCACTCCATTGTTAAACCTGAAAAATTCCAACCCAAACGC‑GCGGAACTTGCCGAGCCTGATTGGGCGCGAAT‑ACAAGAAAACA‑ACTCGGc > 1:538806/1‑239 (MQ=255)
gtgtATGAAGAATATAAACAGTCGGTGCATTTCCAGAA‑CGCCTCCGGCGTGCGAGCTGAATGCCATGACTGTCATATCCCGCCGGATA‑TTCCAGGCATGGTGAAGCGCAAACTGG‑AAGCGAGCAATGATATCTACCAGACCTTTATTGCTCACTCCATTGATACACCTGAAAAATTCGAAGCCAAACGC‑CAGGACATTGCCGAACGTGACTGGGCGCGAAT‑GAAAGAAAACA‑ACTCgcg > 1:871094/1‑237 (MQ=255)
atatAAACAGTCGGTGCATTTCCAGAA‑CGCCTCCGGCGTGCGAGCTGAATGCCATGACTGTCATATCCCGCCGGATA‑TTCCAGGCATGGTGAAGCGCAAACTGG‑AAGCGAGCAATGATATCTACCAGACCTTTATTGCTCACTCCATTGATACACCTGAAAAATTCGAAGCCAAACGC‑GCGGAACTTGCCGAGCGTGAATGGGCGCGAAT‑GAAAGAAAACA‑ACACGGCACCCGGCCGc > 1:203115/1‑238 (MQ=255)
atatAAACAGTCGGTGCATTTCCAGAA‑CGCCTCCGGCGTGCGAGCTGAATGCCATGACTGTCATATCCCGCCGGATA‑TTCCAGGCATGGTGAAGCGCAAACTGG‑AAGCGAGCAATGATATCTACCAGACCTTTATTGCTCACTCCATTGATACACCTGAAAAATTCGAAGCCAAACGC‑GCGGAACTTGCCGAGCGTGAATGGGCGCGAAT‑GAAAGAAAAAA‑AACCGGCAACCGGCCGc > 2:726531/1‑238 (MQ=255)
tataAACGTTCGGTGC‑TTTTCAGAACCGCCTCGGGCGGGCGGGCGAAATGCCATGACTGTCATACCCCGCCGGATA‑TTCCAGGCATGGGGAGGCCAAACCTGA‑AAGGAAGAAATAATATCTACCAGCCCTTTATTGCTCACTCCATTGATACACCTGAAAAATTCGAAGCAAACCGC‑GGGGAACTTGCCGAGCGTGAATGGGCGCGAAT‑GAAAGAAAACA‑ACTCGGCACCCTGCCGCTc < 2:4340/239‑1 (MQ=255)
ataAACGGGGGGTTCATTTCCAGAC‑CCCCTCCGGCGTGCGAGCTAAATGCAATGCCTGTAATATCCCGCCGGATA‑TTCCAGGCATGGGGAAGCGCAAACGGA‑AAGGGGACAATGATAACTCCCAGCCCTTTATTGCTCACCCCATTGATACACCGGAAAAATTCGAAGCCAAACGC‑GGGGAACTTGCCGGGCGTGAATGGGCGCGAAT‑GAAAGAAAACA‑ACCCGGCACCCTGCCGcccc < 2:256085/239‑1 (MQ=255)
aCAGTCGGTGCATTTCCAGAA‑CGCCTCCGGCGTGCGAGCTGAATGCCATGACTGTCATATCCCGCCGGATA‑TTCCAGGCATGGTGAAGCGCAAACTGG‑AAGCGAGCAATGATATCTACCAGACCTTTATTGCTCACTCCATTGATACACCTGAAAAATTCGAAGCCAAACGC‑GCGGAACTTGCCGAGCGTGAATGGGCGCGAAT‑GAAAGAAAACA‑ACTCGGCAACCTGCCGCTCCTGcc > 1:800379/1‑239 (MQ=255)
gTCGGTGCATTTCCAGAA‑CGCCTCCGGCGTGCGAGCTGAATGCCATGACTGTCATATCCCGCCGGATA‑TTCCAGGCATGGTGAAGCGCAAACTGG‑AAGCGAGCAATGATATCTACCAGACCTTTATTGCTCACTCCATTGATACACCTGAAAAATTCGAAGCCAAACGC‑GCGGAACTTGCCGAGCGTGAATGGGCGCGAAT‑GAAAGAAAACA‑ACCCGGCAACCTGCCGCTCCTGCCATa > 1:154785/1‑239 (MQ=255)
gTCGGTGCATTTCCAGAA‑CGCCTCCGGCGTGCGAGCTGAATGCCATGACTGTCATATCCCGCCGGATA‑TTCCAGGCATGGTGAAGCGCAAACTGG‑AAGCGAGCAATGATATCTACCAGACCTTTATTGCTCACTCCATTGATACACCTGAAAAATTCGAAGCCAAACGC‑GCGGAACTTGCCGAGCGTGAATGGGCCCGAAT‑GAAAGAAAACA‑ACTCGGCAACCCGCCGCCCCTGCCATa > 2:122203/1‑239 (MQ=255)
gTCGGTGCATTTCCAGAA‑CGCCTCCGGCGTGCGAGCTGAATGCCATGACTGTCATATCCCGCCGGATA‑TTCCAGGCATGGTGAAGCGCAAACTGG‑AAGCGAGCAATGATATCTACCAGACCTTTATTGCTCACTCCATTGATACACCTGAAAAATTCGAAGCCAAACCC‑GCGGAACTTGCCGAGCGTGAATGGGCGCGACT‑GAAAGAAAACA‑ACTCGGCAACCTGCCGCTCCTGCCAtc > 1:174589/1‑238 (MQ=255)
ggTGCATTTCCAGAA‑CGCCTCCGGCGTGCGAGCTGAATGCCATGACTGTCATATCCCGCCGGATA‑TTCCAGGCATGGTGAAGCGCAAACTGG‑AAGCGAGCAATGATATCTACCAGACCTTTATTGCTCACTCCATTGATACACCTGAAAAATTCGAAGCCAAACGC‑GCGGAACTTGCCGAGCGTGATTGGGCCGGAAT‑GAAAAAAAACA‑ACTCGGCAACCTGACGCACCCGCCATaaaa > 2:294726/1‑237 (MQ=255)
cATTTCCAAAA‑CGCCTCCGGCGTGCGAGCTGAATGCCATGACTGTCATACCCCGCCGGATA‑TTCCAGGCATGGTGAAGCGCAAACTGG‑AAGCGAGCAATGATATCTACCAGACCTTTATTGCTCACTCCATTGATACACCTGAAAAATTCGAAGCCAAACGC‑GCGGAACTTGCCGAGCGTGAATGGGCGCGAAT‑GAAAGAAAACA‑ACTCGGCAACCTGCCGCTCCTGCCATAACTAcg < 1:122203/238‑1 (MQ=255)
ccccggggtgggtgtgaagtcccATGCCTGTAATATCCCGCCGGATT‑TCCCGGGCATGGGAAACCCAAAACTGG‑AAGCGAGAAATGATATCTACCAGACCTTTATTGCGCACTCCATTGATACCCCTGAAAAATTCGAAGCAAAACGC‑GCGGAATTTGCCGAGCGTGAATGGGCGCGAAT‑GAAAGAAAACA‑ACTCGGCACCCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATg < 2:392546/218‑1 (MQ=255)
ccGGCGGGCGGTTTGAATGCCCTGCCTGACATATCCGCCCGGAAA‑TTCCAGGCATGGTGAAGCGCAAACTGG‑AAGCGAGCAATGATATCTACCAGACCTTTATTGCTCACTCCATTGATACACCTGAAAAATTCGAAGCCAAACGC‑GAGGAACTTGCCGAGCGTGAAGGGGCGCGAAT‑GAAAGAAAACA‑ACCCGGCACCCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCg < 1:294726/239‑1 (MQ=255)
tGCGAGCTGAATGCCATGACTGTCATATCCCGCCGGATA‑TTCCAGGCATGGTGAAGCGCAAACTGG‑AAGCGAGCAATGATATCTACCAGACCTTTATTGCTCACTCCATTGATACACCTGAAAAATTCGAAGCCAAACGC‑GCGGAACTTGCCGAGCGTGAATGGGCGCGAAT‑GAAAGAAAACA‑ACTCGGCAACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAagcag > 1:392546/1‑239 (MQ=255)
tGCGAGCTGAATGCCATGACTGTCATATCCCGCCGGATA‑TTCCAGGCATGGTGAAGCGCAAACTGG‑AAGCGAGCAATGATATCTACCAGACCTTTATTGCTCACTCCATTGATACACCTGAAAAATTCGAAACCAAACGC‑GCGGAACTTGCCGAGCGTGAATGGGCGCGAAT‑GAAAGAAACCA‑ACTCGGCAACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAagcag > 1:662563/1‑239 (MQ=255)
cGAGCTGAATGCCATGACTGTCATATCCCGCCGGATA‑TTCCAGGCATGGTGAAGCGCAAACTGG‑AAGCGAGCAATGATATCTACCAGACCTTTATTGCTCACTCCATTGATACACCTGAAAAATTCGAAGCCAAACGC‑GCGGAACTTGCCGAGCGTGAATGGGCGCGAAT‑GAAAGAAAACA‑ACTCGGCAACCTGCCGCTCCTGCCATAACTACGATGCGATGGa > 1:765410/1‑224 (MQ=255)
cGAGCTGAATGCCATGACTGTCATATCCCGCCGGATA‑TTCCAGGCATGGTGAAGCGCAAACTGG‑AAGCGAGCAATGATATCTACCAGACCTTTATTGCTCACTCCATTGATACACCTGAAAAATTCGAAGCCAAACGC‑GCGGAACTTGCCGAGCGTGAATGGGCGCGAAT‑GAAAGAAAACA‑ACTCGGCAACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAagcagc > 1:824582/1‑238 (MQ=255)
ggttaattgccctgacgtgcaatCCCGCCGGGTATTTCCAGCCGTGGGAAAGCAAAAACGGA‑AAGGGTACAAGAATATTTACCAACCCTTTATTGCCCACCCCATTGATACCCCTGAAAAAGTCGAAGCAAAACGC‑GCGGAACTTGCCGGGCGTGAAGGGGCGCGAAG‑GAAAGAAAACA‑ACCCGGCAGCCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATc < 2:869292/218‑1 (MQ=255)
cttccATTACTTTCATCTCCCGCCGATTT‑TCCCAGGAAGGGTGAAGCAAAAACTGT‑AAGCGAGCAATAATATCCACCAGACTTATATGGCTCACTCCATCGATCACCCTGAAAAATTAGAACCCAAACGG‑GCGCACCTTGCCGAGCGTGAAGGGGAGCAAAA‑GAACGAAAACA‑ACTCGCCACCCCCCTGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAag < 2:487258/236‑1 (MQ=255)
gtttGTCCTACCCCGCGGGATA‑TTCCAGGCATGGTGAAGCGCAAACTGG‑AAGCGAGAAATGATATCCACCAGACCTTTATGGCTCACTCAATTGATACACCTGAAAAATTCGAAGCAAAACGC‑GCGAAACTTGCCGGGCGTGAATGGGCGAGAAT‑GAAAGAAAACA‑ACTCGGCACCCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACg < 2:897240/236‑1 (MQ=255)
cTGTCATATCCCGCCGGATA‑TTCCAGGCATGGTGAAGCGCAAACTGG‑AAGCGAGCAATGATATCTACCAGACCTTTATTGCTCACTCCATTGATACACCTGAAAAATTCGAAGCCAAACGC‑GCGGAACTTGCCGAGCGTGAATGGGCGCGAAT‑GATAGAAAACA‑ATTCGGCAACCTGCCGCTCCTGCCATAACTACGATGCGATGGTACCTCGGAAGCCGCACCCTGAAGAGGCACGTc > 1:31988/1‑239 (MQ=255)
cATATCCCGCCGGATA‑TTCCAGGCATGGTGAAGCGCAAACTGG‑AAGCGAGCAATGATATCTACCAGACCTTTATTGCTCACTCCATTGATACACCTGAAAAATTCGAAGCCAAACGC‑GCGGAACTTGCCGAGCGTGAATGGGCGCGAAT‑GAAAGAAAACA‑ACTCGGCAACCTGCCGCTCCTGCCATAACTACGATGCGCTGGATCATGCGAACCAGCATCCTGAAGCAGCACGTCAGAt > 1:450797/1‑239 (MQ=255)
ccgGATA‑TTCCAGGCATGGTGAAGCGCAAACTGG‑AAGCGAGCAATGATATCTACCAGACCTTTATTGCTCACTCCATTGATACACCTGAAAAATTCGAAGCCAAACGC‑GCGGAACTTGCCGAGCGTGAATGGGCGCGAAT‑GAAAGAAAACA‑ACTCGGCAACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAAATAAAGggggg > 2:871632/1‑238 (MQ=255)
gCATGGTGAAGCGCAAACTGG‑AAGCGAGCAATGATATCTACCAGACCTTTATTGCTCACTCCATTGATACACCTGAAAAATTCGAAGCCAAACGC‑GCGGAACTTGCCGAGCGTGAATGGGCGCGAAT‑GCAAGAAAACA‑ACTCGCCAACCTGCCGCTCCTGCCATAACTACGATGCGAGGGAGCATGCGAACCAGAACACTCAAGCACCACGCAGGAGGAAGGGGGGAGGGAAAGaaaaa > 2:465372/1‑238 (MQ=255)
gCATGGTGAAGCGCAAACTGG‑AAGCGAGCAATGATATCTACCAGACCTTTATTGCTCACTCCATTGATACACCTGAAAAATTCGAAGCCAAACGC‑GCGGAACTTGCCGAGCGTGAATGGGCGCGAAT‑GAAAGAAAACA‑ACTCGGCAACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATaa > 1:842668/1‑238 (MQ=255)
gCATGGTGAAGCGCAAACTGG‑AAGCGAGCAATGATATCTACCAGACCTTTATTGCTCACTCCATTGATACACCTGAAAAATTCGAAGCCAAACGC‑GCGGAACTTGCCGAGCGTGAATGGGCGCGAAT‑GAAAGAAAACA‑ACTCGGCAACCTCCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATACTTAAGCAGCACGTCAGGTGTAGGGAGCAGCGAAAGATaat > 1:842674/1‑239 (MQ=255)
cAAACTGG‑AAGCGAGCAATGATATCTACCAGACCTTTATTGCTCACTCCATTGATACACCTGAAAAATTCGAAGCCAAACGC‑GCGGAACTTGCCGAGCGTGAATGGGCGCGAAT‑GAAAGAAAACA‑ACTCGGCAACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCg > 1:456536/1‑239 (MQ=255)
aCTGGAAAGCGAGAAATAATATCTCCCAGCCCTTTTTTTCTCATCCCATTGATACACCTGAAAAATTCAAACCAAAACGC‑GCGGACGTGGCGGGGCGTGAAGGGGCGCGAAA‑AAAAGAAAACA‑ACTCGGCAACCGGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGAc < 2:203115/239‑1 (MQ=255)
aGCAATGATATCTACCAGACCTTTATTGCTCACTCCATTGATACACCTGAAAAATTCGAAGCCAAACGC‑GCGGAACTTGCCGAGCGTGAATGGGCGCGAAT‑GAAAGAAACCA‑ACTCGGCAACCTGCCGCTCCTGCCATAACTACGCTGCGATGGACCATCCGAAGCAGCATCCTGAACCAGCCCGTCAGATGCAAGGGGCAGCGAAAGGAAATCAAACCGACATCggcgttaataaggg > 2:518299/1‑226 (MQ=255)
cAATGATATCTACCAGACCTTTATTGCTCACTCCATTGATACACCTGAAAAATTCGAAGCCAAACGC‑GCGGAACTTGCCGAGCGTGAATGGGCGCGAAT‑GAAAGAAAACA‑ACTCGGCAACCTGCCGCTCCTGCCATAACTAcg > 1:624729/1‑143 (MQ=255)
cAATGATATCTACCAGACCTTTATTGCTCACTCCATTGATACACCTGAAAAATTCGAAGCCAAACGC‑GCGGAACTTGCCGAGCGTGAATGGGCGCGAAT‑GAAAGAAAACA‑ACTCGGCAACCTGCCGCTCCTGCCATAACTACGTGGCGATGGATCATGCGAAGCAACATCCTGCAGCAGCCCGCCGGCTGAAGGTGGCAGCGAAAGATAATCAAAccctcaccgcacgaccaaaaggaa > 2:797006/1‑217 (MQ=255)
tataagaaccagcttttATTGCTCACTCCATTGAACCCCCTGAAAAATTCGAAGCCAAACGC‑GCGGAACTTGCCGAGCGTGAATGGGCGCGAAT‑GAAAGAAAACA‑ACTCGGCAACCGGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGTCATAAAGGTATTGcc < 1:784899/225‑1 (MQ=255)
aatCCACCAGGCCTTTATTGCTCACTCCATTGAAACCCCTGAAAAATTCGAAGCCAAACGC‑GCGGAACTTGCCGAGCTGGAATGGGCGCGAAT‑GAAAGAAAACA‑ACGCGGCAACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGTCATAAAGGTATTGc < 1:726531/236‑1 (MQ=255)
aCCAGACCTTTATTGCTCACTCCATTGATACACCTGAAAAATTCGAAGCCAAACGC‑GCGGAACTTGCCGAGCGTGAATGGGCGCGAAT‑GAAAGAAAACA‑ACTCAGCAACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGCTGGCAGCGAAAGATAATCAAGCCTGCATCAACTGTCATAAAGGGATTGCcaacccg > 1:854315/1‑237 (MQ=255)
gccctttattccctcttCCTTTGATACACTTAAAAAATTCGAACACAAAAGC‑GGGGAACTCGCGGAGCTGGAATGGGCGAAAAT‑GAAAAAAAACA‑CCCCGGCAACCGGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGTCATAAAGGTATTGCCCACCAGTTAc < 2:456536/223‑1 (MQ=255)
aCCTTTATTGCTCACTCCATTGATACACCTGAAAAATTCGAAGCCAAACGC‑GCGGAACTTGCCGAGCGTGAATGGGCGCGAAT‑GAAAGAAAACA‑ACTCGGCAACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGCCTGTCATAAAGGAATTGCCCACCAGTTAcc > 1:534168/1‑239 (MQ=255)
caaccgcaatgaaacaacCTGAAAAATGAGAGGCAAAACGC‑GTGAAACTTGCCGAGCGATAATGGGC‑AGAATGGAAAGAAACAA‑TCTCGGAAACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGTCATAAAGGTATTGCCCGCCAGTTACCGGATATGAGt < 1:137999/223‑1 (MQ=255)
tCACTCCATTGATACACCTGAAAAATTCGAAGCCAAACGC‑GCGGAACTTGCCGAGCGTGAATGGGCGCGAAT‑GAAAGAAAACA‑ACTCGGCAACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCCGATGAAGGTGCCAGCGAAAGATAATCAATCCTCCATCGCCTGTCAAAAAGGAATTGCCCCCCAGTTACCGGAAATGAgaa > 2:900990/1‑237 (MQ=255)
cACTCCATTGATACACCTGAAAAATTCGAAGCCAAACGC‑GCGGAACTTGCCGAGCGTGAATGGGCGCGAAT‑GAAAGAAAACA‑ACTCGGCAACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAACAGCATCCTGAAGCAGCACGTAAGATGAAGGGGGCCGCGAAAGATAATCAATCCTGCATCGACTGCCATAAAGGAATTGCCAACCAGTTAccccgtcccttata > 2:784899/1‑227 (MQ=255)
tctagtagtACACCTGAAAAATTCGAAGCCAAACGC‑GCGGAACTTGCCGAGCGTGAATGGGCGCGAAT‑GAAAAAAAACA‑ACGCGTCAACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGTCATAAAGGTATTGCCCACCAGTTACCGGATATGAGTAGCgg < 1:115657/231‑1 (MQ=255)
tCCATTGATACACCTGAAAAATTCGAAGCCAAACGC‑GCGGAACTTGCCGAGCGTGAATGGGCGCGAAT‑GAAAGAAAACA‑ACTCGGCAACCTGCCGCTCCTGCCATCACTACGATGCGATGGATCATGCGAACCAGCATCCTGACGCAGAACGTCCGTGGAAGGTGGCAGGGAAAGATAATCAATCCTGCATCACCTGTCATAAAGGAATTTCCAACCAGTTACCGGATATCAGAAACgg > 2:723751/1‑239 (MQ=255)
aTACACCTGAAAAATTCGAAGCCAAACGC‑GCGGAACTTGCCGAGCGTGAATGGGCGCGAAT‑GACAGAAAACA‑ACTCGGCAACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGTCATAAAGGTATTGCCCACCAGTTACCGGATCTGAGTACGGGCTTCCGt > 1:345353/1‑239 (MQ=255)
tACACCTGAAAAATTCGAAGCCAAACGC‑GCGGAACTTGCCGAGCGTGAATGGGCGCGAAT‑GAAAGAAAACA‑ACTCGGCAACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGTCATAAAgg > 1:138324/1‑198 (MQ=255)
tACACCTGAAAAATTCGAAGCCAAACGC‑GCGGAACTTGCCGAGCGTGAATGGGCGCGAAT‑GAAAGAAAACA‑ACTCGGCAACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGTCATAAAGGTATTGCCCCCCAGTTACCGGATATGAGTAGCGGCTTCCGTa > 1:413012/1‑239 (MQ=255)
ccccTAAAAAATTCAAAG‑CAAACGCGGCGAAACTTGCCGACGGTGAATGGGCCGGAAT‑GAAAGAAACCA‑ACCCGGAAACCTGCCGTCCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGTCATAAAGGTATTGCCCACCAGTTACCGGATATGAGTAGCGGCTTCCGTAAg < 1:358177/237‑1 (MQ=255)
cacCTGAAAAATTCGAAGCCAAACGC‑GCGGAACTTGCCGAGCGTGAATGGGCGCGAAT‑GAAAGAAAACA‑ACTCGGCAACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGCTGAAGGCGGCAGCGAAAGATAATCAATCCTTCATCGACTGTCATAAAGGTATAGCCCACACGTTACAGGATATGAGTAGCGGCGTCCGTaa > 1:703837/1‑238 (MQ=255)
cacCTGAAAAATTCGAAGCCAAACGC‑GCGGAACTTGCCGAGCGTGAATGGGCGCGAAT‑GAAAGAAAACA‑ACTCGGCAACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGTCATAAAGGTATTGCCCACCAGTTACCgg > 1:357050/1‑216 (MQ=255)
cacCTGAAAAATTCGAAGCCAAACGC‑GCGGAACTTGCCGAGCGTGAATGGGCGCGAAT‑GAAAGAAAACA‑ACTCGGCAACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGTCATAAAGGAATTGCCCACCCGTTACCGGATATGAGTAGCGGCTTCCGTaac > 1:255173/1‑238 (MQ=255)
ccTGAAAAATTCGAAGCCAAACGC‑GCGGAACTTGCCGAGCGTGACTGGGCGCGAAT‑GAAAGAAAACA‑ACTCGGCAACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAGGCAGCACGTCAGATGAAGGTGGCAGCGAACGAAAATCAATCCTGCATCGACTGTCATAAGGGTATTGCCCACCAGTTACCGAAAATGAGCAGAggacaccgaaagga > 2:323687/1‑227 (MQ=255)
ccTGAAAAATTCGAAGCCAAACGC‑GCGGAACTTGCCGAGCGTGAATGGGCGCGAAT‑GAAAGAAAACA‑ACTCGGCAACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGCCTGTCATAAAGGAATTGCCCACCAGTTACCGGATATGAGTAGCGGCCTCCGTaacaa > 1:916655/1‑236 (MQ=255)
ccTGAAAAATTCGAAGCCAAACGC‑GCGGAACTTGCCGAGCGTGAATGGGCGCGAAT‑GAAAGAAAACA‑ACTCGGCAACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGTCATAAAGGAATTGCCCCCCAGTTACCGGATATGATAAGCGGCTCCCGTAAGCa > 2:14760/1‑239 (MQ=255)
ttCGAAGCCAAACGC‑GCGGAACTTGCCGAGCGTGAATGGGCGCGAAT‑GAAAGAAAACA‑ACTCGGCAACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGTCATAAAGGAATTGCCCCCCAGTTACCGGAAATGAGCAGCGGCTTCCGTAAAAAGTTCGCTGa > 2:58496/1‑239 (MQ=255)
cGAAGCCAAACGC‑GCGGAACTTGCCGAGCGTGAATGGGCGCGAAT‑GAAAGAAAACA‑ACTCGGCAACCTGCCGCTCCTGCCATAACTACGATGCGCTGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGCTGAAGGTGGCAGCGAACGATAATCAATCCTGCATCGACTGTCATAAAGGACTTGCCCACCAGTTACCGGATATGAGCAACGGCATCCGAAAGAAGTGCGAAGAGc > 2:52195/1‑239 (MQ=255)
aaaccggcgGAAATTGCCGGGCGTAAATGGGCGCGAAT‑GAAAGAAAACA‑ACCCGGCAACCGGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGTCATAAAGGTATTGCCCACCAGTTACCGGATATGAGTAGCGGCTTCCGTAAGCAGTTCGATGAGCTgcgcgc < 1:58496/233‑1 (MQ=255)
gaacctgcccggggggaaaTGGGCACGAAG‑GAAAAAAAACA‑CCTCGGCAACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGTCATAAAGGTATTGCCCACCAGTTACCGGATATGAGTAGCGGCTTCCGTAAGCAGTTCGATGAGCTGCGCGCCAGTGCt < 1:465372/221‑1 (MQ=255)
aCTTGCCGAGCTGGAAGGGGCGCGAAT‑GAAAGAAACCA‑ACTCGGCAACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGTCATAAAGGTATTGCCCACCAGTTACCGGATATGAGTAGCGGCTTCCGTAAGCAGTTCGATGAGCTGCGCGCCAGTGCTAAt < 1:14760/238‑1 (MQ=255)
cTTGCCGGGCGTGAAGGGGCGCGAAT‑GAAAGAAAACA‑ACTTGGCAACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGTCATAAAGGTATTGCCCACCAGTTACCGGATATGAGTAGCGGCTTCCGTAAGCAGTTCGATGAGCTGCGCGCCAGTGCTAATGa < 1:75687/239‑1 (MQ=255)
gCGTGAATGGGCGCGAAT‑GAAAGAAAACA‑ACTCGGCAACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCTTGAAGCAGCACGTCAGATGAAGGTgg > 1:858452/1‑116 (MQ=255)
tttatgggggggaaaT‑AAAAGAAACCC‑CCTCGGAACCCCGCCGCTCCTGACATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGTCATAAAGGTATTGCCCACCAGTTACCGGATATGAGTAGCGGCTTCCGTAAGCAGTTCGATGAGCTGCGCGCCAGTGCTAATGACAGTGGTGac < 2:154785/226‑1 (MQ=255)
gaaaTGGTCGCAAAT‑CAGAAAAATCA‑CCTGGGCAACCGGCCGCTCCTGCCATAACTGCGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGTCATAAAGGTATTGCCCACCAGTTACCGGATATGAGTAGCGGCTTCCGTAAGCAGTTCGATGAGCTGCGCGCCAGTGCTAATGACAGTTGTGaca < 1:344165/237‑1 (MQ=255)
taaaggggggccatgaaaaaaaaaCA‑ACTCGGCAACCGCCCGCTCCTGCCATAACCACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGTCATAAAGGTATTGCCCACCAGTTACCGGATATGAGTAGCGGCTTCCGTAAGCAGTTCGATGAGCTGCGCGCCAGTGCTAATGACAGTGGTGac < 2:916655/222‑1 (MQ=255)
aTGGGCGCGAAT‑GAAAGAAAACA‑ACTCGGCAACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGTCATAAAGGTATTGCCCACCAGTTACCGGATATGAGTAGCGGCTTCCGTAAACAGGTCGATGAGCTGCGCGCCAGTGCTAATGACAGTGGTGACACGc > 2:640545/1‑239 (MQ=255)
aTGGGCCAGAAT‑GAAAGAAAAAA‑AGCCGGCACCCTGCCTGCCCTGGCATAACTACGATGCGATGGATCAGGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGTCATAAAGGTATTGCCCACCAGTTACCGGATATGAGTAGCGGCTTCCGTAAGCAGTTCGATGAGCTGCGCGCCAGTGCTAATGACAGTGGTGACACg < 1:555004/238‑1 (MQ=255)
agggggcagaaggaagaaaaaCA‑ACCCGCCACCCTGCCGGTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGTCATAAAGGTATTGCCCACCAGTTACCGGATATGAGTAGCGGCTTGCGTAAGCAGTTCGATGAGCTGCGCGCCAGTGCTAATGACAGTGGTGACACg < 1:723751/221‑1 (MQ=255)
gggaggaaaT‑GAAAGAAAACC‑ACCTGGACACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGTCATAAAGGTATTGCCCACCAGTTACCGGATATGAGTAGCGGCTTCCGTAAGCAGTTCGATGAGCTGCGCGCCAGTGCTAATGACAGTGGTGACACGCTg < 1:871632/232‑1 (MQ=255)
ggaaaaaaaaaaaaaaAC‑ACGCGGAAACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGTCATAAAGGTATTGCCCACCAGTTACCGGATATGAGTAGCGGCTTCCGTAAGCAGTTCGATGAGCTGCGCGCCAGTGCTAATGACAGTGGTGACACGCTGTa < 2:413012/230‑1 (MQ=255)
gcgAAT‑GAAAAAAAAAACACCGGGCAACTCGCCCACCCGGACATAACTACGATGAGATGGATGATGCAGAGCAACATACTGAAGCAGCAGGTCAGGTGAAGGTGGCAGCGAAAGATAATCAAACCTGCATCGACTGTCATAAAGGTATTGCCCACCAGTTACCGGATATGAGTAGCGGCTTCCGTAAGCAGTTCGATGAGCTGCGCGCCAGTGCTAATGACAGTGGTGACACGCTGTa < 2:407925/238‑1 (MQ=255)
ccaaaT‑GAAAGAAAACA‑ACCCCTCACCCCCCCCCTCCTGCCAAAACTACGATGCAATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGTCATAAAGGTATTGCCCACCAGTTACCGGATATGAGTAGCGGCTTCCGTAAGCAGTTCGATGAGCTGCGCGCCAGTGCTAATGACAGTGGTGACACGCTGTAc < 2:255173/235‑1 (MQ=255)
aT‑GAAAACAAACA‑CCCCGGCAACCTGCAGCCCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGTCATAAAGGTATTGCCCACCAGTTACCGGATATGAGTAGCGGCTTCCGTAAGCAGTTCGATGAGCTGCGCGCCAGTGCTAATGACAGTGGTGACACGCTGTACTCTa < 1:473529/238‑1 (MQ=255)
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GTGTATGAAGAATATAAACAGTCGGTGCATTTCCAGAA‑CGCCTCCGGCGTGCGAGCTGAATGCCATGACTGTCATATCCCGCCGGATA‑TTCCAGGCATGGTGAAGCGCAAACTGG‑AAGCGAGCAATGATATCTACCAGACCTTTATTGCTCACTCCATTGATACACCTGAAAAATTCGAAGCCAAACGC‑GCGGAACTTGCCGAGCGTGAATGGGCGCGAAT‑GAAAGAAAACA‑ACTCGGCAACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGTCATAAAGGTATTGCCCACCAGTTACCGGATATGAGTAGCGGCTTCCGTAAGCAGTTCGATGAGCTGCGCGCCAGTGCTAATGACAGTGGTGACACGCTGTACTCTA > NC_000913/1058252‑1058708
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
