Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A4 F9 I0 R1 260 102.5 2178490 93.2% 2030352 226.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 1,058,486 T→C 14.6% S135P (TCG→CCG)  torC → trimethylamine N‑oxide (TMAO) reductase I, cytochrome c‑type subunit

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,058,4860TC14.6% 271.1 / 5.1 132S135P (TCG→CCG) torCtrimethylamine N‑oxide (TMAO) reductase I, cytochrome c‑type subunit
Reads supporting (aligned to +/- strand):  ref base T (67/36);  new base C (5/19);  total (72/60)
Fisher's exact test for biased strand distribution p-value = 1.51e-04
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 132 total aligned reads displayed.

GTGTATGAAGAATATAAACAGTCGGTGCATTTCCAGAACGCCTCCGGCGTGCGAGCTGAATGCCATGACTGTCATATCCCGC‑CGGATATTCCAGGCATGGTGAAGCGCAAACTGGAAGCGAG‑CAATGATATCTACCAGACCTTTATTGCTCACTCCATTGATACACCTG‑AAAAATTCGAAGCCAAACGCG‑CGGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAAC‑AACTCGGCAACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGTCATAAAGGTATTGCCCACCAGTTACCGGATATGAGTAGCGGCTTCCGTAAGCAGTTCGATGAGCTGCGCGCCAGTGCTAATGACAGTGGTGACACGCTGTACTCTATTGATAT  >  NC_000913/1058252‑1058715
                                                                                                                                                                                                                                               |                                                                                                                                                                                                                                     
gtgtATGAAGAATATAACCAGTCGGTGCATTTCCAGAACGCCTCCGGCGTGCGAGCTGAATGCCATAACTGTCATATCCCGC‑CGGATATTCCAGGCATGGTGAAGCGCAAACTGGAAGCGAG‑CAATGATATCTACCAGACCTTTATTGCTCACTCCATTGATACACCTG‑AAAAATTCGAAGCCAAACGCG‑CGGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAAC‑AAATCGGc                                                                                                                                                                                                                                   >  1:569403/1‑239 (MQ=255)
gtgtATGAAGAATATAAACAGTCGGTGCATTTCCAGAACGCCTCCGGCGTGCGAGCTGAATGCCATGACTGTCATATCCCGC‑CGGATATTCCAGGCATGGTGAAGCGCAAACTGGAAGCGAG‑CAATGATATCTACCAGACCTTTATTGCTCACTCCATTGATACACCTG‑AAAAATTCGAAGCCAAACGCG‑CGGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAAC‑AACTCGGc                                                                                                                                                                                                                                   >  1:177622/1‑239 (MQ=255)
gtgtATGAAGAATATAAACAGTCGGTGCATTTCCAGAACGCCTCCGGCGTGCGAGCTGAATGCCATGACTGTCATATCCCGC‑CGGATATTCCAGGCATGGTGAAGCGCAAACTGGAAGCGAG‑CAATGATATCTACCAGACCTTTATTGCTCACTCCATTGATACACCTG‑AAAAATTCGAAGCCAAACGCG‑CGGAACTTCCCGAGCGTGAATGGGCGCGAATGAAAAAAACC‑AACTCGGc                                                                                                                                                                                                                                   >  1:416769/1‑239 (MQ=255)
  gttataagaaTTAAACCAGTGGGTGCATTTCCAGACCGCCTCCGGGGTGCGAGCTTAATGCCATGACTGTCATATCCCGC‑CGGATTTTCCAGGCATGGTGAAGCGCAAACTGGAAGCGAG‑CAATGATATCTACCAGACCTTTATTGCTCACTCCATTGATACACCTG‑AAAAATTCGAAGCCAAACGCG‑CGGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAAC‑AACTCGGCa                                                                                                                                                                                                                                  <  2:195660/233‑1 (MQ=255)
  gtATGAAGAATATAAACAGTCGGTGCATTTCCAGAACGCCTCCGGCGTGCGAGCTGAATGCCATGACTGTCATATCCCGC‑CGGATATTCCAGGCATGGTGAAGCGCAAACTGGAAGCGAG‑CAATGATATCTACCAGACCTTTATTGCTCACTCCATTGATACACCTG‑AAAAATTCGAAGCCAAACGCG‑CGGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAAC‑AACTCGGCa                                                                                                                                                                                                                                  <  1:994179/238‑1 (MQ=255)
          aaTATAAACAGTCGGTGCATTTCCAGAACGCCTCCGGCGTGCGAGCTGAATGCCATGACTGTCATATCCCGC‑CGGATATTCCAGGCATGGTGAAGCGCAAACTGGAAGCGAG‑CAATGATATCTACCAGACCTTTATTGCTCACTCCATTGATACACCTG‑AAAAATTCGAAGCCAAACGCG‑CGGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAAC‑AACTCGCCAACCTGCCg                                                                                                                                                                                                                          >  1:347384/1‑238 (MQ=255)
              taAACAGTTTGTGCATTTCCAAACCGCCCTCGGCGGGCGGGCTGAATGCCATGACTGTCATACCCCGC‑CGGATCTTCCAGGCATGGGGAAGCGAAAACTGGAAGCGAG‑CAATGATATCTACCAGCCCTTTATTGCTCACTCCATGGATCCCCCTG‑AAAAATTAGAAGCCAACCGGG‑CGGAACTTGCCGAGCGTGAATGGGGGCGAATGAAAGAAAAC‑AACTCGGCACCCTGCCGCTCCt                                                                                                                                                                                                                     <  2:313677/239‑1 (MQ=255)
                    gTCGGTGCATTTCCAGAACGCCTCCGGCGTGCGAGCTGAATGCCATGACTGTCATATCCCGC‑CGGATATTCCAGGCATGGTGAAGCGCAAACTGGAAGCGAG‑CAATGATATCTACCAGACCTTTCTTGCTCACACCATTGATCCACCTG‑AAAAATTCGAAGCCAAAGCCG‑CGGCACTTGCCGAGCGTGAATGGGCGCCAAGGAAGAAAAAA‑AACCCGGAAACCCGcgcgccccgaccaa                                                                                                                                                                                                               >  2:1088284/1‑226 (MQ=255)
                    gTCGGTGCATTTCCAGAACGCCTCCGGCGTGCGAGCTGAATGCCATGACTGTCATATCCCGC‑CGGATATTCCAGGCATGGTGAAGCGCAAACTGGAAGCGAG‑CAATGATATCTACCAGACCTTTATTGCTCACTCCATTGATACACCTG‑AAAAATTCGAAGCCAAACGCG‑CGGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAAC‑AACTCGGCAACCTGCCGCTCCTGCCATa                                                                                                                                                                                                               >  1:273272/1‑239 (MQ=255)
                    gTCGGTGCATTTCCAGAACGCCTCCGGCGTGCGAGCTGAATGCCATGACTGTCATATCCCGC‑CGGATATTCCAGGCATGGTGAAGCGCAAACTGGAAGCGAG‑CAATGATATCTACCAGACCTTTATTGCTCACTCCATTGATACACCTG‑AAAAATTCGAAGCCAAACGCG‑CGGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAAA‑AACTCGGCAACCTGCCCCCCCTGCCaaa                                                                                                                                                                                                               >  2:799002/1‑237 (MQ=255)
                    gTCGGTGCATTTCCAGAACGCCTCCGGCGTGCGAGCTGAATGCCATGACTGTCATATCCCGC‑CGGATATTCCAGGCATGGTGAAGCGCAAACTGGAAGCGAG‑CAATGATATCTACCAGACCTTTATTGCTCACTCCATTGATACACCTG‑AAAAATTCGAAGCCAAACGCG‑CGGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAAA‑AAATCGGCAACCCGCCGCCCCGGCCaaa                                                                                                                                                                                                               >  2:496922/1‑237 (MQ=255)
                     tCGGTGCATTTCCAGAACGCCTCCGGCGTGCGAGCTGAATGCCATGACTGTCATATCCCGC‑CGGATATTCCAGGCATGGTGAAGCGCAAACTGGAAGCGAG‑CAATGATATCTACCAGACCTTTATTGCTCACTCCATTGATACACCTG‑AAAAATTCGAAGCCAAACGCG‑CGGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAAC‑AACTCGGCAACCTGCCGCTCCTGCCATaa                                                                                                                                                                                                              >  1:310318/1‑239 (MQ=255)
                     tCGGTGCATTTCCAGAACGCCTCCGGCGTGCGAGCTGAATGCCATGACTGTCATATCCCGC‑CGGATATTCCAGGCATGGTGAAGCGCAAACTGGAAGCGAG‑CAATGATATCTACCAGACCTTTATTGCTCACTCCATTGATACACCTG‑AAAAATTCGAAGCCAAACGCG‑CGGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAAC‑AAATCGGCAACCTGCCCCCCCCCCCATaa                                                                                                                                                                                                              >  2:1019458/1‑239 (MQ=255)
                     tCGGTGCATTTCCAGAACGCCTCCGGCGTGCGAGCTGAATGCCATGACTGTCATATCCCGC‑CGGATATTCCAGGCATGGTGAAGCGCAAACTGGAAGCGAG‑CAATGATATCTACCAGACCTTTATTGCTCACTCCATTGATACACCTG‑AAAAATTCGAAGCCAAACGCG‑CGGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAAAAAAC‑AAACCGGCAAACTGCCGCCCCGGCCaaaa                                                                                                                                                                                                              >  2:381701/1‑239 (MQ=255)
                          gCATTTCCAGAACGCCCCCGGCGTGCGAGCTGAATGCCATGACTGTTAATCCCCGC‑CGGATATTCCAGGCATGGTGAAGCGCAAACTGGAAGCGAG‑CAATGATATCTACCAGACCTTTATTGCTCACTCCATTGATACACCTG‑AAAAATTCGAAGCCAAACGCG‑CGGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAAC‑AACTCGGCAACCTGCCGCTCCTGCCATAACTAcg                                                                                                                                                                                                         <  1:999805/239‑1 (MQ=255)
                           cATTTCAAAAACGCCCCGGGCGGGCGAGCTGAATGCCATGACTGCCATATCCCGC‑CGGATATTCCAGGAATGGTGAAGCGCAAACTGGAAGCGAG‑CAATGATATCTACCAGCCCTTTATTGCTCACTCCATTGATACACCTG‑AAAAATTCGAAGCCAAACGCG‑CGGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAAC‑AACTCGGCAACCTGCCGCTCCTGCCATAACTAcg                                                                                                                                                                                                         <  1:1034291/238‑1 (MQ=255)
                           agtttCCAGACCCCCTCCGGAGGTCGAGCTGAATGCCATGACGTGCATATCCCGC‑CGGAAATTCCAGGCATGGTGAAGCGAAAACTGGAAGCTAG‑CAAGGATATCTACAAGCCCTTTATTGCTCCTTCCATTGATACTCCTG‑AAAAATTCGAAGCCAACCGCG‑CGGAACTTACCGAGCGTGAAGGGTCGCAAATGAAAGAAAAC‑AACTCGGCAACCTGCCGCTCCTGCCATAACTAcg                                                                                                                                                                                                         <  1:532053/236‑1 (MQ=255)
                               tCCAGAACGCCTCCGGCGTGCGAGCTGAATGCCATGACTGTCATATCCCGC‑CGGATATTCCAGGCATGGTGAAGCGCAAACTGGAAGCGAG‑CAATGATATCTACCAGACCTTTATTGCTCACTCCATTGATACACCTG‑AAAAATTCGAAGCCAAACTCG‑CGGAACTTGCCGAGCGGGAATGGGCGCGAATGAAAGAAAAA‑AACTCGGAAACCTGCCGCACCTGCCATaaaaacaaagag                                                                                                                                                                                                    >  2:571535/1‑229 (MQ=255)
                               tCCAGAACGCCTCCGGCGTGCGAGCTGAATGCCATGACTGTCATATCCCGC‑CGGATATTCCAGGCATGGTGAAGCGCAAACTGGAAGCGAG‑CAATGATATCTACCAGACCTTTATTGCTCACTCCATTGATACACCTG‑AAAAATTCGAAGCCAAACGCG‑CGGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAAC‑AACTCGGCAACCTGCCGCTCCTGCCATAACTAcgatggg                                                                                                                                                                                                    >  1:926903/1‑237 (MQ=255)
                                   gAACGCCTCCGGCGTGCGAGCTGAATGCCATGACTGTCATATCCCGC‑CGGATATTCCAGGCATGGTGAAGCGCAAACTGGAAGCGAG‑CAATGATATCTACCAGACCTTTATTGCTCACTCCATTGATACACCTG‑AAAAATTCGAAGCCAAACGCG‑CGGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAAC‑AACTCGGCAACCTGCCGCCCCTGCCATAACTACCATGCGATgg                                                                                                                                                                                                >  1:472531/1‑239 (MQ=255)
                                    ggaatatCCGGCGTGCGAGCTGAATGCCATGACTGTCATATCCCGC‑CGGATATTCCAGGCATGGTGAAGCGCAAACTGGAAGCGAG‑CAATGATATCTACCAGACCTTTATTGCTCACTCCATTGATACACCTG‑AAAAATTCGAAGCCAAACGCG‑CGGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAAC‑AACTCGGCAACCTGCCGCTCCTGCCATAACTACGATGCGATgg                                                                                                                                                                                                >  1:73129/7‑238 (MQ=255)
                                     aCGCCGCGGGGGGGCGGGCTGAATGCCTTGCCTGGCATACCCCGC‑GGGATTTTCCAGGCATGGGGAAGCGCAAACGGAAAGCGAG‑AAATGATCTCTACCAACCCTTTTTTGCCCACCCCATGGATACCCCGA‑AAAATTTCGAAGCCAAACGCG‑GGGACCTTGCCGGGCGTGAATGGGGGCGAATGAAAGAAAAC‑AACTCGGCACCCTGCCGCTCCTGCCATAACTACGATGCGATGGa                                                                                                                                                                                               <  2:254656/238‑1 (MQ=255)
                                         cTCCGGCGTGCGAGCTGAATGCCATGACTGTCATATCCCGC‑CGGATATTCCAGGCATGGTGAAGCGCAAACTGGAAGCGAG‑CAATGATATCTACCAGACCTTTATTGCTCACTCCATTGATACACCTG‑AAAAATTCGAAGCCAAACGCG‑CGGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAAC‑AACCCGGCAACCTGCCGCTCCTGCCAAAACCACGATGCGAGGGAACaag                                                                                                                                                                                          >  2:1040840/1‑237 (MQ=255)
                                                 tGCGAGCTGAATCCCATGACTTCCATATCCCGC‑CGGATATTCCGGGCATGGTGAAGCGCAAACTGGAAGCGAG‑CAATGATATCTACCAGACCTTTATTGCTCACTCCATTGATACACCTG‑AAAAATTCGAAGCCAAACGCG‑CGGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAAC‑AACTCGGCAACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAagca                                                                                                                                                                                   <  1:1019458/238‑1 (MQ=255)
                                                  gCGGGCTGAATGCCATGACTGTCATACCCCGC‑CGGATATTCCAGGCATGGTGAAGCGCAAACGGGAAGCGAG‑CAATGATATCTACCAGACCTTTATTGCTCCCTCCATTGATCCACCTG‑AAAAATTCGAAGCCAAACGCG‑CGGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAAC‑AACTCGGCAACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAagcag                                                                                                                                                                                  <  1:793267/238‑1 (MQ=255)
                                                               catccctttgatctCCCGC‑TGTATATTCCAGTGAGTGGGAAGCGAAAACGGGAAGAGAA‑CAATGATATCTCCCAGACATTTTTTGCTCACTCCATGGAAACGCCTG‑AAAATGTGGAAGCAAAACGCG‑CGGACCTTGCCGAGGTTAATTGGGCGCAAAGGAATGAAAAC‑AACTCGGCACCCGGCCGCCCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTCAagcag                                                                                                                                                                     <  2:939682/225‑1 (MQ=255)
                                                                     cgttaaccccccccgggaattcccAGGCAGGGGGAAGCGCAAAGGGAAAGGCAG‑AAATTAAATCTCCCAGTCTTTAATGGCTCACTCCATTGA‑ACCCCTGAAAAAATTCGAAGCAAAACGCG‑CGAAACTTGCCGAGCGTAAATGGGCGCGAATAAAAAAAAAC‑ACCTCGGCAACCTGCCGCCCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGt                                                                                                                                                                <  2:668442/216‑1 (MQ=255)
                                                                       ttatatCCCGCGCGAATTTTCCAGGCTTGGTGAGCCGCAAACTGGAAGCGAA‑CAATGATTTCCACCAGCCCTTTTTTCCTCCCCCCATTGATACACCTG‑AAAAATTCGAAGCCAAACGCG‑CGGAACTTGCCGAGCGTGAATGGGGGCGAATAAAAGAAAAC‑ACCTCGGCACCCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAg                                                                                                                                                             <  2:274228/237‑1 (MQ=255)
                                                                       tCATATCCCGC‑CGGATATTCCAGGCATGGTGAAGCGCAAACTGGAAGCGAG‑CAATGATATCTACCAGACCTTTATTGCTCACTCCATTGATACACCTG‑AAAAATTCGAAGCCAAACGCG‑CGGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAAC‑AACTCGGCAACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGa                                                                                                                                                                          <  1:938798/225‑1 (MQ=255)
                                                                            tCCCGC‑CGGATATTCCAGGCATGGTGAAGCGCAAACTGGAAGCGAG‑CAATGATATCTACCAGACCTTTATTGCTCACTCCATTGATACACCTG‑AAAAATTCGAAGCCAAACGCG‑CGGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAAC‑AACTCGGCAACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAg                                                                                                                                                       >  1:341489/1‑239 (MQ=255)
                                                                               cgc‑cgGATATTCCAGGCATGGTGAAGCGCAAACTGGAAGCGAG‑CAATGATATCTACCAGACCTTTATTGCTCACTCCATTGATACACCTG‑AAAAATTCGAAGCCAAACGCG‑CGGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAAC‑AACTCGGCAACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAgggg                                                                                                                                                    >  1:266324/1‑237 (MQ=255)
                                                                                 c‑cgGATATTCCAGGCATGGTGAAGCGCAAACTGGAAGCGAG‑CAATGATATCTACCAGACCTTTATTGCTCACTCCATTGATACACCTG‑AAAAATTCGAAGCCAAACGCG‑CGGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAAC‑AACTCGGCAACCTGCCGCTCCTGCCATACCTACGATGCGATGGATCATGCGAACAAGAACCCTGAagaacaacgccctgtcccttaaac                                                                                                                                                  >  2:938798/1‑217 (MQ=255)
                                                                                 c‑cgGATATTCCAGGCATGGTGAAGCGCAAACTGGAAGCGAG‑CAATGATATCTACCAGACCTTTATTGCTCACTCCATTGATACACCTG‑AAAAATTCGAAGCCAAACGCG‑CGGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAAC‑AACTCGGCAACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAACCAGCATCCTGAACCAGCCCGCCCGATGAAGGGGGc                                                                                                                                                  >  2:72523/1‑239 (MQ=255)
                                                                                 c‑cgGATATTCCAGGCATGGTGAAGCGCAAACTGGAAGCGAG‑CAATGATATCTACCAGACCTTTATTGCTCACTCCATTGATACACCTG‑AAAAATTCGAAGCCAAACGCG‑CGGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAAC‑AACTCGGCAACCTGCCGCTCCTGCCATAACTACGATGCGAAGGATCATGGGAAAAAGCACCCGGAAGAAGCACGTCAAAGGAAGgggga                                                                                                                                                  >  2:46559/1‑238 (MQ=255)
                                                                                               gcgttggaaaccccaaccggaaaGGGAG‑CAATTATTCCTCCCAGACTTTTTTTGCTCACCCCATTGATACACCTG‑AAAAATTCGAAGCCAAACGCG‑CGGAACTTGCCGGGGGTGAATGGGCGAGAATGAAAGAAAAC‑AACCCGGCAACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATaat                                                                                                                                     <  2:928463/218‑1 (MQ=255)
                                                                                                gtatgggAAGCCCAAACTGGGAGAGGGAAAATGAAATCTACCAGCCCTTTTTGGCTCACTCCATGGATACCCCTA‑AAAAATTCAAAGCCAAGCGAG‑GGGACCTTGCCGAGCTGGAATGGGCGCGAATGAAAGAAAAC‑ACCCCGGCACCCTGCCCCCCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATaat                                                                                                                                     <  2:54689/233‑1 (MQ=255)
                                                                                                ctgggTGAAGCCCAAACTGGAAGGGAG‑CAATGATATCTACCAGGCATTTATGGCCCACTCCATTGATACACCTG‑AAAAATTGGAAGCCAAACGCG‑CGGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAAC‑AACTCGGCAACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATaat                                                                                                                                     <  1:46559/235‑1 (MQ=255)
                                                                                                aaTGGTAAAGCGCAAACTGGAAGCGAG‑CAATGATATCTACCAGTCCTTTATTGCTCACTCCATTGATACCCCGG‑AAAAATGCGAAGCCAAACGCG‑CGGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAAC‑AACTCGGCAACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATaat                                                                                                                                     <  1:799002/237‑1 (MQ=255)
                                                                                                 aTGGTGAAGCGCAAACTGGAAGCGAG‑CAATGATATCTACCAGACCTTTATTGCTCACTCCATTGATACACCTG‑AAAAATTCGAAGCCAAACGCG‑CGGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAAC‑AACTCGGCAACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGAGGCAGCGAAAGATaatca                                                                                                                                   >  1:552993/1‑239 (MQ=255)
                                                                                                   ggTGAAGCGCAAACTGGAAGCGAG‑CAATGATATCTACCAGACCTTTATTGCTCACTCCATTGATACACCTG‑AAAAATTCGAAGCCAAACGCG‑CGGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAAC‑AACTCGGCAACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATaatcaa                                                                                                                                  >  1:928463/1‑238 (MQ=255)
                                                                                                    gTGAAGCGCAAACTGGAAGCGAG‑CAATGATATCTACCAGACCTTTATTGCTCACTCCATTGATACACCTG‑AAAACTTCGAAGCCAAACGCG‑CGGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAAC‑AACTCGGCAACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCCGCACGTCAGATGAATGGGGCAGCGAAGGATaagcaat                                                                                                                                 >  1:687928/1‑238 (MQ=255)
                                                                                                    gTGAAGCGCAAACTGGAAGCGAG‑CAATGATATCTACCAGACCTTTATTGCTCACTCCATTGATACACCTG‑AAAAATTCGAAGCCAAACGCG‑CGGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAAC‑AACTCGGCAACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCCCGTCAGATGAAGGTGGCAGGGAAAGATaatcaat                                                                                                                                 >  1:1022578/1‑238 (MQ=255)
                                                                                                             cacttGGAAGGGAA‑CAAGTATTTCTCCAAGTTCTTTTTTGCTCACTCCATTGATCCCCCTA‑AAAAATACGAAGCCAAACGCG‑CGGATCTTGCCGGGCGTGAAGGGGCGCGAATGAAAAAAACC‑ACCTCGGCACCCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGa                                                                                                                       <  2:588712/235‑1 (MQ=255)
                                                                                                             aaccgggAAGCGAG‑CAATGATACTTCCAAGCCCTTTATTGCCACCTCCATTGATACCCCGG‑AAAAATTCGAAGCCAAACGCG‑CGGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAAC‑AACTCGGCAACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGa                                                                                                                       <  1:760817/234‑1 (MQ=255)
                                                                                                             aaccTGGAAGCGAG‑AAATTATATCTCCCAGCCCTTTATTGCT‑ACCCCATGAATACACCAA‑AAAATGTAGAAGCC‑AACGCGTCGAACCTCGCCGAGCGTGAATGGGGCCGAA‑GAAAAAAAACAAACCCGCCACCCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGa                                                                                                                       <  2:749862/235‑1 (MQ=255)
                                                                                                              accTGGAACCGGA‑CAAGAATAACTACCAGACCTTTATTGCCCACTCACTTGATACACCTG‑AAAAATTCGAAGCCAACGGCG‑CGGACCTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAAC‑AACTCGGCAACCTGCCACTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGAc                                                                                                                      <  1:1088284/237‑1 (MQ=255)
                                                                                                               acctggagcagaaaaaTTATATCCACCAGTCTTTTATTTCTCACTCCAGTGAAACCCCTA‑AAAAATGAGAAGCCAAACGCG‑CGGAACGTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAAC‑AACTCGGCAACCGGCCGCCCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGAc                                                                                                                      <  2:1022578/225‑1 (MQ=255)
                                                                                                               aCTGGAAGCGAG‑CAATGATATCTACCAGACCTTTATTGCTCACTCCATTGATACACCTG‑AAAAATTCGAAGCCAAACGCG‑CGGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAAC‑AACTCGGCAACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCg                                                                                                                        >  1:1037070/1‑236 (MQ=255)
                                                                                                                     agagAG‑CATTGTTTTCTCCCAGCCTTTTATTGCCCACTCCTTTGATACCCCAG‑AAAAAGTCGAACACAAACGCG‑GGAAACTTGCGGGGGGTGAAGGGGTGCGAATGAAAGAAAAC‑AACCCGGCAACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGTCATa                                                                                                               <  2:266324/236‑1 (MQ=255)
                                                                                                                         aG‑CAATGATATCTACCAGACCTTTATTGCTCACTCCATTGATACACCTG‑AAAAATTCGAAGCCAAACGCG‑CGGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAAC‑AACTCGGCAACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCACCTGTCATaaa                                                                                                             >  1:552518/1‑237 (MQ=255)
                                                                                                                         aG‑CAATGATATCTACCAGACCTTTATTGCTCACTCCATTGATACACCTG‑AAAAATTCGAAGCCAAACGCG‑CGGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAAC‑AACTCGGCAACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAAATAAACAATccgccaacaacggccaaaaagg                                                                                                           >  2:92269/1‑219 (MQ=255)
                                                                                                                                         cAGACCTTTATTGCTCACTCCATTGATACACCTG‑AAAAATTCGAAGCCAAACGCG‑CGGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAAC‑AACTCGGCAACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAagcag                                                                                                                                                                                  >  2:791807/1‑153 (MQ=255)
                                                                                                                                         cAGACCTTTATTGCTCACTCCATTGATACACCTG‑AAAAATTCGAAGCCAAACGCG‑CGGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAAC‑AACCCGGCAACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAagcag                                                                                                                                                                                  <  1:791807/153‑1 (MQ=255)
                                                                                                                                          aGACCTTTATTGCTCACTCCATTGATACACCTG‑AAAAATTCGAAGCCAAACGCG‑CGGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAAC‑AACTCGGCAACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCGGATGAAGGGGGCAGCGAAAGATAATCAATCCTGCATCGACTGTCATAAAGAGATTGCCCCCAAGtt                                                                                            >  2:148617/1‑238 (MQ=255)
                                                                                                                                           gACCTTTATTGCTCACTCCATTGATACACCTG‑AAAAATTCGAAGCCAAACGCG‑CGGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAAC‑AACTCGGCAACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGTCATAAAGGTATTGCCCACCAGTTa                                                                                           >  1:219229/1‑238 (MQ=255)
                                                                                                                                           gACCTTTATTGCTCACTCCATTGATACACCTG‑AAAAATTCGAAGCCAAACGCG‑CGGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAAC‑AACTCGGCAACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGTCATAAAGGGATTGCCCACCAGTTAc                                                                                          >  1:389970/1‑239 (MQ=255)
                                                                                                                                            aCCTTTATTGCTCACTCCATTGATACACCTG‑AAAAATTCGAAGCCAAACGCG‑CGGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAAC‑AACTCGGCAACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCACCTGTCATAAAGGGATTGCCACCCAGTTAcc                                                                                         >  1:417572/1‑239 (MQ=255)
                                                                                                                                             ccTTTATTGCTCACTCCATGGATACCCCTG‑AAAAATTGAAAGCAAACCGCG‑CGGACCTTGCCGAGCGTGAAGGGGCGCGAATGAAAGAAAAC‑AACGCGGCAACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGTCATAAAGGTATTGCCCACCAGTTa                                                                                           <  1:496922/236‑1 (MQ=255)
                                                                                                                                                ttttgtctctccccATTGATCCCCGAG‑AAAAATCCGAAGCCACACGCG‑CGGAACTTCCCGGGGGTGAAGGGGCGCAAATGAAAAAAAAC‑ACCCCGGCACCCGCCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGTCATAAAGGTATTGCCCACCAGTTACCGGat                                                                                     <  2:910419/227‑1 (MQ=255)
                                                                                                                                                ttATTGCTCACTCCATTGATAAACCTG‑AAAAATTCGAAGCCAAACGCG‑CGGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAAC‑AACTCGGCAACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCACTCCTGCATCGACTGCCATAAAGGAATTGCCCACCAGTTACCGGat                                                                                     >  1:321206/1‑239 (MQ=255)
                                                                                                                                                      cTCACTCCATTGATACACCTG‑AAAAATTCGAAGCCAAACGCG‑CGGAACTTGCCGAGCGTGAATGGGCGCGACTGAAAGAAAAC‑AACTCGGCAACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAACCAGCATCCTGAAACAGCACGCCAGATGAAGGGGGCAGCGAAAGATAAGAAATCCTGCATCGCCTGTCAAAAAGGAATTGCCCCCCAATAACCgggaaaagaa                                                                               >  2:558421/1‑231 (MQ=255)
                                                                                                                                                       tCACTCCATTGATACACCTG‑AAAAATTCGAAGCCAAACGCG‑CGGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAAC‑AACTCGGCAACCTGCCGCTCCTGCCATAACTACGATGCGATGGa                                                                                                                                                                                               >  2:15597/1‑126 (MQ=255)
                                                                                                                                                        cACTCCATTGATACACCTG‑AAAAATTCGAAGCCAAACGCG‑CGGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAAC‑AACTCGGCAACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGCAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGCAATAACGGAATTGCCCACCGGTAACCGGaaataggaa                                                                              >  2:746492/1‑233 (MQ=255)
                                                                                                                                                        cACTCCATTGATACACCTG‑AAAAATTCGAAGCCAAACGCG‑CGGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAAC‑AACTCGGCAACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGTTGGCAGCGAAAGATAATCCATCCTGCATCGACTGTCATAAAGGTATTGCCCACCAGTTACCGGaaatatgaaa                                                                             >  2:249660/1‑233 (MQ=255)
                                                                                                                                                        cACTCCATTGATACACCTG‑AAAAATTCGAAGCCAAACGCG‑CGGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAAC‑AACTCGGCAACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGTCATAAAGGTATTGCCCACCAGTTACCGGAAATGAGTa                                                                              >  1:779315/1‑238 (MQ=255)
                                                                                                                                                           tCCATTGATACACCTG‑AAAAATTCGAAGCCAAACGCG‑CGGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAAC‑AACTCGGCAACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCCGCACGCCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGTCATCAAGGTATTGCCCCCCAGTAACCGGAAATGAGTAGCgc                                                                          >  2:708084/1‑238 (MQ=255)
                                                                                                                                                           tCCATTGATACACCTG‑AAAAATTCGAAGCCAAACGCG‑CGGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAAC‑AACTCGGCAACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGTCATAAAgg                                                                                                           >  1:565330/1‑206 (MQ=255)
                                                                                                                                                           tCCATTGATACACCTG‑AAAAATTCGAAGCCAAACGCG‑CGGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAAC‑AACTCGGCAACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGCCAGCGAAAGCTAATCAATCCTGCATCGACTGTCATAAAGGTATTGCCCCCCAGTTACCGCATCTGAGtcgg                                                                            >  1:1079616/1‑234 (MQ=255)
                                                                                                                                                           ccgttgtatcccccag‑AAAAATGCGAAGCCAACCGCG‑GGGTACTGGCCGGCGGTGGAGGGGCAGAAATAGAGAAAAAC‑ACCTCGGCACCCTGCCGCCCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGTCATAAAGGTATTGCCCACCAGTTACCGGATATGAGTAGCgg                                                                          <  2:1967/224‑1 (MQ=255)
                                                                                                                                                           cccATTGATCCCCCGA‑AAAAATCCGAGACAAAACGGC‑GGGAACTTGCCGAGCGGGAATGGGCGCGAAAGAAAGAAACC‑AACCCGGCAACCTGCCGCCCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGTCATAAAGGTATTGCCCACCAGTTACCGGATATGAGTAGCgg                                                                          <  1:708084/238‑1 (MQ=255)
                                                                                                                                                           ccaaTTGAAACCCCTA‑AAAAATGCGAAGCCAACCCGG‑GGGAACTTGCCGGGCGTAAAGGGGCGCAAATGAAAGAAAAC‑AACTCGGCAACCGGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGTCATAAAGGTATTGCCCACCAGTTACCGGATATGAGTAGCgg                                                                          <  1:138311/236‑1 (MQ=255)
                                                                                                                                                                 gATACACCTG‑AAAAATTCGAAGCCAAACGCG‑CGGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAAC‑AACTCGGCAACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGAGGAAGGTGGCAGCGAAAGATAATCAATCCTGAATCGCCTGCCATAAAGGTATTGCCCACCAGTTACCGGATATGAATAGGGGCCTCCg                                                                    >  2:121322/1‑239 (MQ=255)
                                                                                                                                                                   tACACCTG‑AAAAATTCGAAGCCAAACGCG‑CGGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAAC‑AACTCGGCAACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGGGGCAGCGAAAGATAATCAATCCTGCATCGACTGTCATAAAGGACTTTCCCACCAGTTACCGGATATGGGGAGCGGCTTCCGTa                                                                  >  2:832588/1‑239 (MQ=255)
                                                                                                                                                                    acccccaaaaaaaTTCGAAACAAAGCGCG‑CGAAACTTGCCGGGCGTGAAGGGGCGAGAATGAAAAAAAAC‑AACTCGGCAACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGTCATAAAGGTATTGCCCACCAGTTACCGGATATGAGTAGCGGCTTCCGTa                                                                  <  2:167355/231‑1 (MQ=255)
                                                                                                                                                                     cacCTG‑AAAAATTCGAAGCCAAACGCG‑CGGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAAC‑AACTCGGCACCCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGAttacg                                                                                                                                                       >  1:701259/1‑148 (MQ=255)
                                                                                                                                                                     cacCTG‑AAAAATTCGAAGCCAAACGCG‑CGGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAAC‑AACTCGGCAACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGTCATAAGGGAATTGCCCACCAGTTACCGGATATAAGTAGCGGCTTCCGTAAg                                                                >  1:182011/1‑239 (MQ=255)
                                                                                                                                                                     cacCTG‑AAAAATTCGAAGCCAAACGCG‑CGGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAAC‑AACTCGGCAACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGTCATAAAGGAATTGCCCACCAGTTACCGGATATGAGTAGCGGCTTCCGTaa                                                                 >  1:662794/1‑238 (MQ=255)
                                                                                                                                                                       ccTG‑AAAAATTCGAAGCCAAACGCG‑CGGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAAC‑AACTCGGCAACCTGCCGCTCCTGCCa                                                                                                                                                                                                                 <  1:754579/92‑1 (MQ=255)
                                                                                                                                                                       ccTG‑AAAAATTCGAAGCCAAACGCG‑CGGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAAC‑AACTCGGCAACCTGCCGCTCCTGCCa                                                                                                                                                                                                                 >  2:754579/1‑92 (MQ=255)
                                                                                                                                                                       ccTG‑AAAAATTCGAAGCCAAACGCG‑CGGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAAC‑AACTCGGCAACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGTCATAAAGGTATTGCCCACCCGTTACCGGATATGAGAAGCGGCTCCCGaaaaaa                                                              >  2:852128/1‑236 (MQ=255)
                                                                                                                                                                       ccTG‑AAAAATTCGAAGCCAAACGCG‑CGGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAAC‑AACTCGGCAACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGTCATAAAGGTATTGCCCACCAGTTACCGGATATGAGTAGCGGCTTCCGTAAGCa                                                              >  1:448226/1‑239 (MQ=255)
                                                                                                                                                                       ccTG‑AAAAATTCGAAGCCAAACGCG‑CGGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAAC‑AACTCGGCAACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGTCATAAAGGGATTGCCCACCAGTTACCGGAAATGAGTAGCGGCTTCCGTAAgaa                                                              >  1:224119/1‑237 (MQ=255)
                                                                                                                                                                       ccTG‑AAAAATTCGAAGCCAAACGCG‑CGGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAAC‑AACTCGGCAACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGGGGCAGCGAAAGATAATCAATCCTGCATCGACTGCCATAAAGGTATTGCCCACCAGTTACCGGAAATAAGAAGGGGCTTCCGTAAgag                                                              >  2:703378/1‑237 (MQ=255)
                                                                                                                                                                       ccTG‑AAAAATGCGAAGCCAAACGCG‑CGGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAAC‑AACTCGGCAACCTGCCGCTCCTGCCATAACTACGATGCGAAGGCTCATGCGAAGCAGCATCCTGAACCAGCACGCCAGAGGAAGGTGGGAGCGAAAGATAAACAATACTGCATTCACTGCCATAACGGTATTGCCCCCCCGTTACCGGATATTGATAGCGGCTcccagaagaa                                                              >  2:1059970/1‑232 (MQ=255)
                                                                                                                                                                                 ttCGAAGCCAAACGCG‑CGGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAAC‑AACTCGGCAACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATCATCAATCCTGCATGGACTGTCATAAAGGTATTGCCCCCCAGTTACCGGATATGAGTCGCGGCTTCCGAAAGCAGTTCGATGa                                                     >  2:293173/1‑239 (MQ=255)
                                                                                                                                                                                             acgcgggtactttGCGGGGCGTGAATGGGCGCAAATGAAAGAAAAC‑ACCTGGGCAACCTGCCGCCCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGTCATAAAGGTATTGCCCACCAGTTACCGGATATGAGTAGCGGCTTCCGTAAGCAGTTCGATGAGCTGCGCGCCa                                          <  1:207384/228‑1 (MQ=255)
                                                                                                                                                                                               gcggcgAACTTGCCGGGGGGGAATGGGCCGGAATGAAAGAAAAC‑AACTCGGCAACCTGCCGCCCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGTCATAAAGGTATTGCCCACCAGTTACCGGATATGAGTAGCGGCTTCCGTAAGCAGTTCGATGAGCTGCGCGCCa                                          <  1:234619/232‑1 (MQ=255)
                                                                                                                                                                                                                 gggAATGGGCGGGAATGAAAGAAAAC‑AACTCGGCAACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGTCATAAAGGTATTGCCCACCAGTTACCGGATATGAGTAGCGGCTTCCGTAAGCAGTTCGATGAGCTGCGCGCCAGTGCTAATGACAgtggtg                        <  1:148617/235‑1 (MQ=255)
                                                                                                                                                                                                                  tGAATGGGCGCGAATGAAAGAAAAC‑AACTCGGCAACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGTCATAAAGGTATTGCCCACCAGTTACCGGATATGAGTAGCGGCTTCCGTAAGCAGTTCGATGAGCTGCGCGCCAGTGCTAATGACAGTGGTGac                      <  1:381701/238‑1 (MQ=255)
                                                                                                                                                                                                                   aaatggggcaaaaTGAAAAAAAAA‑AACCGGGCAACCTGCCCCCCCTGGCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGTCATAAAGGTATTGCCCACCAGTTACCGGATATGAGTAGCGGCTTCCGTAAGCAGTTCGATGAGCTGCGCGCCAGTGCTAATGACAGTGGTGaca                     <  2:448226/227‑1 (MQ=255)
                                                                                                                                                                                                                     aTGGGCGCGAATGAAAGAAAAC‑AACCCGGCAACCTGCCCCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGTCATAAAGGTATTGCCCACCAGTTACCGGATATGAGTAGCGGCTTCCGTAAGCAGTTCGATGAGCTGCGCGCCAGTGCTAATGACAGTGGTGACACg                   <  1:121322/238‑1 (MQ=255)
                                                                                                                                                                                                                       gggcgaaaagaaaaaaaaaC‑ACCGCGCCACCTCGCCCCCCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGTCATAAAGGTATTGCCCACCAGTTACCGGATATGAGTAGCGGCTTCCGTAAGCAGTTCGATGAGCTGCGCGCCAGTGCTAATGACAGTGGTGACACGCt                 <  2:219229/227‑1 (MQ=255)
                                                                                                                                                                                                                        gggcaaaaTAAAAAAAAAC‑AACCCGGCAACCTGCCCCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCCCGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGTCATAAAGGTATTGCCCACCAGTTACCGGATATGAGTAGCGGCTTCCGTAAGCAGTTCGATGAGCTGCGCGCCAGTGCTAATGACAGTGGTGACACGCt                 <  1:571535/231‑1 (MQ=255)
                                                                                                                                                                                                                          gcatgaataaagaaagC‑CACGCGCCACCCGCCCCCCCCTGCCATACCTCCAACACAGTGGATCAGGCGAAGCCGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCAAAAGATAATCAATCCTGCATCGACTGTCAGAAAGGTATTGCCCACCAGTTACCGGATATGAGTAGCGGCTTCCGTAAGCAGTTCGATGAGCTGCGCGCCAGTGCTAATGACAGTGGTGACACTCTGTa              <  2:115268/230‑1 (MQ=255)
                                                                                                                                                                                                                          cgcgAATGAAAGAAAAC‑AACTCGGCAACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGTCATAAAGGTATTGCCCACCAGTTACCGGTTATGAGTAGCGGCTTCCGTAAGCCGTTCGATGAGCTGCGCGCCAGTGCTGATGACAGTGGTGACACGcctt               >  1:1066479/1‑234 (MQ=255)
                                                                                                                                                                                                                          cgcgAATGAAAAAAAAC‑ACCCCGCCACCCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGTCATAAAGGTATTGCCCACCAGTTACCGGATATGAGTAGCGGCTTCCGTAAGCAGTTCGATGAGCTGCGCGCCAGTGCTAATGACAGTGGTGACACGCTGTa              <  1:852128/238‑1 (MQ=255)
                                                                                                                                                                                                                          cgataaTGAAAAAAAAC‑AACCCGGAAACCTGCCGCTCCGGCCATAACCACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGTCATAAAGGTATTGCCCACCAGTTACCGGATATGAGTAGCGGCTTCCGTAAGCAGTTCGATGAGCTGCGCGCCAGTGCTAATGACAGTGGTGACACGCTGTa              <  1:832588/234‑1 (MQ=255)
                                                                                                                                                                                                                           gagAATGAAAGAAAAC‑AACGCGGCAACCTGCCGCCCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGTCATAAAGGTATTGCCCACCAGTTACCGGATATGAGTAGCGGCTTCCGTAAGCAGTTCGATGAGCTGCGCGCCAGTGCTAATGACAGTGGTGACACGCTGTAc             <  1:92269/236‑1 (MQ=255)
                                                                                                                                                                                                                               ataaaagaaaAC‑AACCCGGCAACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGTCATAAAGGTATTGCCCACCAGTTACCGGATATGAGTAGCGGCTTCCGTAAGCAGTTCGATGAGCTGCGCGCCAGTGCTAATGACAGTGGTGACACGCTGTACTCTAt        <  1:388331/236‑1 (MQ=255)
                                                                                                                                                                                                                               acaaaagaaaCC‑CCCTCCCCACCCTGCCTCCTCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGTCATAAAGGTATTGCCCACCAGTTACCGGATATGAGTAGCGGCTTCCGTAAGCAGTTCGATGAGCTGCGCGCCAGTGCTAATGACAGTGGTGACACGCTGTACTCTAt        <  2:389970/236‑1 (MQ=255)
                                                                                                                                                                                                                                               |                                                                                                                                                                                                                                     
GTGTATGAAGAATATAAACAGTCGGTGCATTTCCAGAACGCCTCCGGCGTGCGAGCTGAATGCCATGACTGTCATATCCCGC‑CGGATATTCCAGGCATGGTGAAGCGCAAACTGGAAGCGAG‑CAATGATATCTACCAGACCTTTATTGCTCACTCCATTGATACACCTG‑AAAAATTCGAAGCCAAACGCG‑CGGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAAC‑AACTCGGCAACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGTCATAAAGGTATTGCCCACCAGTTACCGGATATGAGTAGCGGCTTCCGTAAGCAGTTCGATGAGCTGCGCGCCAGTGCTAATGACAGTGGTGACACGCTGTACTCTATTGATAT  >  NC_000913/1058252‑1058715

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A