Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A2 F9 I0 R1 142 103.7 2603848 81.8% 2129947 227.3

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 1,058,486 T→C 19.8% S135P (TCG→CCG)  torC → trimethylamine N‑oxide (TMAO) reductase I, cytochrome c‑type subunit

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,058,4860TC19.8% 165.6 / 4.8 99S135P (TCG→CCG) torCtrimethylamine N‑oxide (TMAO) reductase I, cytochrome c‑type subunit
Reads supporting (aligned to +/- strand):  ref base T (53/18);  new base C (5/17);  total (59/40)
Fisher's exact test for biased strand distribution p-value = 2.35e-05
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

GTGTATGAAGAATATAAACAGTCGGTGCATTTCCAGAACGCCTCCGGCGTGCGAGCTGAATGCCATGACTGTCATATCCCGC‑CGGATATTCCAGGCATGGTGAAGCGCAAACTGGAAGCGAGCAATGATATCTACCAGACCTTTATTG‑CTCACTCCATTGATACACCTGAAAAATTCGAAGCCAAACGCGCGGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAA‑C‑AACTCGGCA‑ACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGT‑CATAAAGGTATTGCCCACCAGTTACCGGAT‑ATGAGTAGCGGCTTCCGTAAGCAGTTCGATGAGCTGCGCGCCAGTGCTAATGACAGTGGTGACACGCTGTACTCTATTGATATTAAG  >  NC_000913/1058252‑1058719
                                                                                                                                                                                                                                              |                                                                                                                                                                                                                                            
gtgtATGAAGAATATAAACAGTCGGTGCATTTCCAGAACGCCTCCGGCGTGCGAGCTGAATGCCATGACTGTCATATCCCGC‑CGGATATTCCAGGCATGGTGAAGCGCAAACTGGAAGCGAGCAATGATATCTACCAGACCTTTATTG‑CTCACTCCATTGATACACCTGAAAAATTCGAAGCCAAACGCGCGGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAA‑C‑AACTCGGc                                                                                                                                                                                                                                          >  2:1147175/1‑239 (MQ=255)
gtgtATGAAGAATATAAACAGTCGGTGCATTTCCAGAACGCCTCCGGCGTGCGAGCTGAATGCCATGACTGTCATATCCCGC‑CGGATATTCCAGGCATGGTGAAGCGCAAACTGGAAGCGAGCAATGATATCTACCAGACCTTTATTG‑CTCACTCCATTGATACACCTGAAAAATTCGAAGCCAAACGCGCGGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAA‑A‑AACTCGGc                                                                                                                                                                                                                                          >  2:617352/1‑239 (MQ=255)
gtgtATGAAGAATATAAACAGTCGGTGCATTTCCAGAACGCCTCCGGCGTGCGAGCTGAATGCCATGACTGTCATATCCCGC‑CGGATATTCCAGGCATGGTGAAGCGCAAACTGGAAGCGAGCAATGATATCTACCAGACCTTTATTG‑CTCACTCCATTGATACACCTGAAAAATTCGAAGCCAAACGCGCGGAACTTGCCGAGCGGGAATGGGCGCGAATGAAAGAAAA‑C‑AACTCGGc                                                                                                                                                                                                                                          >  2:318219/1‑239 (MQ=255)
gtgtATGAAGAATATAAACAGTCGGTGCATTTCCAGAACGCCTCCGGCGTGCGAGCTGAATGCCATGACTGTCATATCCCGC‑CGGATATTCCAGGCATGGTGAAGCGCAAACTGGAAGCGAGCAATGATATCTACCAGACCTTTATTG‑CTCACTCCATTGATACACCTGAAAAATTCGAAGCCAAACGCGCGGAACTTGCCGACCGTGAATGGGCGCGAATGAAAGAAAA‑A‑AACTCGGc                                                                                                                                                                                                                                          >  2:1198210/1‑239 (MQ=255)
gtgtATGAAGAATATAAACAGTCGGTGCATTTCCAGAACGCCTCCGGCGTGCGAGCTGAATGCCATGACTGTCATATCCCGC‑CGGATATTCCAGGCATGGGGAAGCGCAAACTGGAAGCGAGCAATGATATCTACCAGACCTTTATTG‑CTCACTCCATTGATACACCTGAAAAATTCGAAGCCAAACGCGCGGAACTTGCCGACCGTGAATGGGGGCGAATGAAAGAAAA‑C‑AACTCGGc                                                                                                                                                                                                                                          >  2:1233908/1‑239 (MQ=255)
     tGAAGAATATAAACAGTCGGTGCATTTCCAGAACGCCTCCGGCGTGCGAGCTGAATGCCATGACTGTCATATCCCGC‑CGGATATTCCAGGCATGGTGAAGCGCAAACTGGAAGCGAGCAATGATATCTACCAGACCTTTATTG‑CTCACTCCATTGATACACCTGAAAAATTCGAAGCCAAACGCGCGGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAA‑C‑AACTCGGCa‑a                                                                                                                                                                                                                                       >  2:1204327/1‑236 (MQ=255)
       aagaaTATAAACAGTCGGTGCATTTCCAGAACGCCTCCGGCGTGCGAGCTGAATGCCATGACTGTCATATCCCGC‑CGGATATTCCAGGCATGGTGAAGCGCAAACTGGAAGCGAGCAATGATATCTACCAGACCTTTATTG‑CTCACTCCATTGATACACCTGAAAAATTCGAAGCCAAACCCGCGGAACTTGCCGAGCGTGAATGGGCGCAAATGAAAGAAAA‑C‑AACTCGGCA‑CCCtc                                                                                                                                                                                                                                   >  2:511877/1‑237 (MQ=255)
           atatAAACAGTCGGTGCATTTCCAGAACGCCTCCGGCGTGCGAGCTGAATGCCATGACTGTCATATCCCGC‑CGGATATTCCAGGCATGGTGAAGCGCAAACTGGAAGCGAGCAATGATATCTACCAGACCTTTATTG‑CTCACTCCATTGATACACCTGAAAAATTCGAAGCCAAACGCGCGGAACTTGCCGAGCGTGAATGGGGGCGAATGAAAGAAAA‑C‑AACTCGGCA‑ACCTGCCGc                                                                                                                                                                                                                               >  2:652672/1‑238 (MQ=255)
           atatAAACAGTCGGTGCATTTCCAGAACGCCTCCGGCGTGCGAGCTGAATGCCATGACTGTCATATCCCGC‑CGGATATTCCAGGCATGGTGAAGCGCAAACTGGAAGCGAGCAATGATATCTACCAGACCTTTATTG‑CTCACTCCATTGATACACCTGAAAAATTCGAAGCCAAACGCGCGGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAA‑C‑AACTCGGCA‑ACCTGCCGc                                                                                                                                                                                                                               >  2:111232/1‑238 (MQ=255)
           atatAAACAGTCGGTGCATTTCCAGAACGCCTCCGGCGTGCGAGCTGAATGCCATGACTGTCATATCCCGC‑CGGATATTCCAGGCATGGTGAAGCGCAAACTGGAAGCGAGCAATGATATCTACCAGACCTTTATTG‑CTCACTCCATTGATACACCTGAAAAATTCGAAGCCAAACGCGCGGAACTTGCCGAGCGGGAATGGGCGCGAATGAAAGAAAA‑C‑AACTCGCCA‑ACCTGCCGc                                                                                                                                                                                                                               >  2:438217/1‑238 (MQ=255)
            ataaaacagtggggtattttCCAGACCCCTCCCGGCGGGGGAGCGGAATGCCAGGACTGGAATA‑CCCGCGCGGATATTCCAGGCTTGGGGAAGCGAAAACTGGAAGGCAGAAATGATACCTCCAAGACCTTTATTG‑CCAACTCCATTGAAAACCCTGAAAAATTCGAAGCCAAACGCGCGGAACGTGCCGAGCGTGAATGGGCGCGAATAAAAGAAAA‑C‑AACTGGGAA‑CCCTGCCGCTc                                                                                                                                                                                                                             <  1:1184397/222‑1 (MQ=255)
                    gTCGGTGCATTTCCAGAACGCCTCCGGCGTGCGAGCTGAATGCCATGACTGTCATATCCCGC‑CGGATATTCCAGGCATGGTGAAGCGCAAACTGGAAGCGAGCAATGATATCTACCAGACCTTTATTG‑CTCACTCCATTGATACACCTGAAAAATTCGAAGCCAAACGCGCGGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAA‑C‑AACTCGGCA‑ACCTGCCGCTCCTGCCATa                                                                                                                                                                                                                     >  2:953220/1‑239 (MQ=255)
                    gTCGGTGCATTTCCAGAACGCCTCCGGCGTGCGAGCTGAATGCCATGACTGTCATATCCCGC‑CGGATATTCCAGGCATGGTGAAGCGCAAACTGGAAGCGAGCAATGATATCTACCAGACCTTTATTG‑CTCACTCCATTGATACACCTGAAAAATTCGAAGCCAAACGCGCGGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAA‑C‑AACTCGGCA‑ACCGCCCGCCGCTGCCATa                                                                                                                                                                                                                     >  2:979253/1‑239 (MQ=255)
                    gTCGGTGCATTTCCAGAACGCCTCCGGCGTGCGAGCTGAATGCCATGACTGTCATATCCCGC‑CGGATATTCCAGGCATGGTGAAGCGCAAACTGGAAGCGAGCAATGATATCTACCAGACCTTTATTG‑CTCACTCCATTGATACACCTGAAAAATTCGAAGCCAAACGCGCGGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAA‑C‑AACGCGGCA‑ACCCGCGGCTccctgcaaa                                                                                                                                                                                                                     >  1:222503/1‑232 (MQ=255)
                    gTCGGTGCATTTCCAGAACGCCTCCGGCGTGCGAGCTGAATGCCATGACTGTCATATCCCGC‑CGGATATTCCAGGCATGGTGAAGCGCAAACTGGAAGCGAGCAATGATATCTACCAGACCTTTATTG‑CTCACTCCATTGATACACCTGAAAAATTCGAAGCCAAACGCGCGGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAA‑C‑AACCCGGCA‑CCCTGCCGCTCCTGCCATa                                                                                                                                                                                                                     >  2:543095/1‑239 (MQ=255)
                      cGGTGCATTTCCAGAACGCCTCCGGCGTGCGAGCTGAATGCCATGACTGTCATATCCCGC‑CGGATATTCCAGGCATGGTGAAGCGCACACTGGAAGCGAGCAATGATATCTACCAGACCTTTATTG‑CTCACTCCATTGATACACCTGAAAAATTCGAAGCCAAAACCCCGGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGCAAA‑C‑AAACCGGCA‑ACCTCCCGCCCTTGCCCTacc                                                                                                                                                                                                                   >  2:1018569/1‑237 (MQ=255)
                      cGGTGCATTTCCAGAACGCCTCCGGCGTGCGAGCTGAATGCCATGACTGTCATATCCCGC‑CGGATATTCCAGGCATGGTGAAGCGCAAACTGGAAGCGAGCAATGATATCTACCAGACCTTTATTG‑CTCACTCCATTGATACACCTGAAAAATTCGAAGCCAAACGCGCGGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAA‑C‑AACTCGGCA‑ACCTGCCGCTCCTGCCATaa                                                                                                                                                                                                                    >  2:1184397/1‑238 (MQ=255)
                      cGGTGCATTTCCAGAACGCCTCCGGCGTGCGAGCTGAATGCCATGACTGTCATATCCCGC‑CGGATATTCCAGGCATGGTGAAGCGCAAACTGGAAGCGAGCAATGATATCTACCAGACCTTTATTG‑CTCACTCCATTGATACACCTGAAAAATTCGAAGCCAAACGCGCGGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAA‑C‑AACTCGGCA‑ACCTGCCGCTCCTGCCATAAc                                                                                                                                                                                                                   >  2:997855/1‑239 (MQ=255)
                      cGGTGCATGTCAAGAACGCCTCCGGCGTGCGAGCTGAATGCCATGACTGTCATATCCCGC‑CGGATATTCCAGGCATGGTGAAGCGCAAACTGGAAGCGAGCAATGATATCTACCAGACCTTTATTG‑CTCACTCCATTGATACACCTGAAAAATTCGAAGCCAAACGCGCGGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAA‑C‑AACTCGGCA‑ACCTGCCGCTCCTGCCa                                                                                                                                                                                                                       <  2:852799/235‑1 (MQ=255)
                       ggTGCATTTCCAGAACGCCTCCGGCGTGCGAGCTGAATGCCATGACTGTCATATCCCGC‑CGGATATTCCAGGCATGGTGAAGCGCAAACTGGAAGCGAGCAATGATATCTACCAGACCTTTATTG‑CTCACTCCATTGATACACCTGAAAAATTCGAAGCCAAACGCGCGGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAA‑C‑AACTCGGCA‑ACCTGCCGCTCCTGCCATAAc                                                                                                                                                                                                                   >  2:868662/1‑238 (MQ=255)
                        gTGCATTTCCAGAACGCCTCCGGCGTGCGAGCTGAATGCCATGACTGTCATATCCCGC‑CGGATATTCCAGGCATGGTGAAGCGCAAACTGGAAGCGAGCAATGATATCTACCAGACCTTTATTG‑CTAACTCCATTGATACACCTGAAAAATTCGAAGCCAAAAGCCCCGAACTTGCCCACGATGAAGGGGCGGGAAGGAAAAAAAA‑A‑AACTCGGAA‑Acccccagacccggccaaaacaa                                                                                                                                                                                                                 >  1:161991/1‑219 (MQ=255)
                          tttttcccaaacccccTCCGGGGTGGCGGTTGAAGCCCATGACTGCCATTCCCCGC‑CGGATTTCCCGGGAATGGGGAAGCGCAAACGGGAAGCGACAAATGATATCTGCCAGCCCTTTATTG‑CTCACCCCATTAATCCCCCTGAAAAATTCAAAGCCAAACGCGGGGACCTTGCCGAGGGTGAATGGGCGCGAATGAAAGAAAA‑C‑AACCCGGCA‑CCCTGCCGCTCCTGCCATAACTAcg                                                                                                                                                                                                               <  1:111232/225‑1 (MQ=255)
                          gCATTTCCAGAACGCCTCCGGCGTGCGAGCTGAATGCCATGACTGTCATATCCCGC‑CGGATATTCCAGGCATGGTGAAGCGCAAACTGGAAGCGAGCAATGATATCTCCCAGACCTTTATTG‑CTCACTCCATTGATACACCTGAAAAATTCGAAGCCAAACGCGCGGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAA‑C‑AACTCGGCA‑ACCTGCCGCTCCTGCCATAACTAcg                                                                                                                                                                                                               <  2:433552/239‑1 (MQ=255)
                           cATTTCCAGAACGCCTCCGGCGTGCGATCTGAATGCCATGACTGTCATACCCCGC‑CGGATATTCCAGGCATGGTGAAGCGCAAACTGGAAGCGAGCAATGATATCTACCAGACCTTTATTG‑CTCACTCAATTGATACACCTGAAAAATTCGAAGCCAAACGGGCGGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAA‑C‑AACTCGGCA‑ACCTGCCGCTCCTGCCATAACTAcg                                                                                                                                                                                                               <  2:913602/238‑1 (MQ=255)
                                   gAACGCCTCCGGCGTGCGAGCTGAATGCCATGACTGTCATATCCCGC‑CGGATATTCCAGGCATGGTGAAGCGCAAACTGGAAGCGAGCAATGATATCTACCAGACCTTTATTG‑CTCACTCCATTGATACACCTGAAAAATTCGAAGCCAAACGCGCGGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAA‑C‑AACTCGGCA‑ACCTGCCGCTCCTGCCATAACTACGATGCGATgg                                                                                                                                                                                                      >  2:1034550/1‑239 (MQ=255)
                                      cccccccGGCGTGGGAGGTAAATGCCATGACTGTCATACCCCGC‑GGGATATCCCAGACTTGGTGAAGCGCAAACTGGAAAGGAGCAATGATTACTCCCAGCCCTTTATGG‑CCCACCCCATGGATAAACCTAAAAAATTGGAAGCCAACCGCGCGGAACTTGCCGAGCGGGAATGGGCGAGAATGAAAGAAAA‑C‑AACCCGGCA‑ACCTGCCGCTCCTGCCATAACTACGATGCGATGGATc                                                                                                                                                                                                   <  1:1204327/234‑1 (MQ=255)
                                       gCCTCCGGCGTGCGAGCTGAATGCCATGACTGTCATATCCCGC‑CGGATATTCCAGGCATGGTGAAGCGCAAACTGGAAGCGAGCAATGATATCTACCAGACCTTTATTG‑CTCACTCCATTGATACACCTGAAAAATTCGAAGCCAAACGCGCGGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAC‑C‑AACCCGACA‑ACCTGCCGCCCCTCCCATAACAAGGAAGCGATggcaac                                                                                                                                                                                                  >  1:1161302/1‑235 (MQ=255)
                                                   cGAGCTGAATGCCATGACTGTCATATCCCGC‑CGGATATTCCAGGCATGGTGAAGCGCAAACTGGAAGCGAGCAATGATATCTACCAGACCTTTATTG‑CTCACTCCATTGATACACCTGAAAAATTCGAAGCCAAACGCGCGGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAA‑C‑AACTCGGCA‑ACCTGCCGCTCCTGCCATAACTACGATGCGATGGATAATGCGAagcagc                                                                                                                                                                                       >  2:813781/1‑238 (MQ=255)
                                                             tgctatgttttacatacccagatggATATTCAGGTCATGGCGACGCGAAAACTGGAAGCGAGCAAAGATATCTCCAACACCTTTATTG‑CGCACTCCATTTATACACGTGAAAAATCCGAAGCCAAACGCGCGGACCTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAA‑C‑ACCTCGGCA‑ACCTGCCCCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAagc                                                                                                                                                                             <  1:438217/216‑1 (MQ=255)
                                                              cctttaCTGTAATATCCCGC‑CGGATTTTCCAGGCATGGAGAAGCGCAAACTGGAAGCCAGCAATGATATCTACCAGACCTTTATTG‑CTCACTCCATTGATACACCTGAAAAATTCGAAGCCAAACGCGCGGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAA‑C‑AACTCGGCA‑ACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAagc                                                                                                                                                                             <  2:828845/232‑1 (MQ=255)
                                                               ctggccTGTCATTCCCCGC‑CGGATATTCCAGGCATGGTGAAGCGAAACCTGGAAGCGAGCAATGATATCTACCAGACCTTTATTG‑CTCACTCCATTGATACACCTGAAAAATTCGAAGCCAAACGCGCGGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAA‑C‑AACTCGGCA‑ACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAagcag                                                                                                                                                                           <  2:222503/233‑1 (MQ=255)
                                                                   gcttgcaatccccccgggaatcttCCAGGCATGGTGAAACGCAAACTGGACGCGAGAAATGAAAGCTACCAGTCCTTTATTG‑CTCCCCCCTTTGATACACCTGAAAATTTCGAACCCAAACGCGGGGATCTTGCCGGGCGTGAATGGGCGCAAATGAAAGAAAA‑A‑ACCCCGGCA‑ACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACg                                                                                                                                                                       <  1:1201557/217‑1 (MQ=255)
                                                                   gactggtattcccccagggATTTCCCAGGCAGGGGGAAGGCAAAACGGGAAGCGGACAAGTATACCTACCAGACCTTTATTC‑CCCCCCCATTTGAGCCACCGGAAAATTTCAAAGCCAACGCCGGGGACCTTGCCGAGCGTGAATGGGCGCAAATGAAAGAAAA‑A‑AACGGGCCA‑CCCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACg                                                                                                                                                                       <  1:953220/222‑1 (MQ=255)
                                                                    cTGTCATATCCCGC‑CGGATATTCCAGGCATGGTGAAGCGCAAACTGGAAGCGAGCAATGATATCTACCAGACCTTTATTG‑CTCACTCCATTGATACACCTGAAAAATTCGAAGCCAAACGCGCGGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAA‑C‑AACTCGGCA‑ACCTGCCGCTCCTGCCATAACTAcgatgcgatg                                                                                                                                                                                                       >  2:527037/1‑205 (MQ=255)
                                                                    cTGTCATATCCCGC‑CGGATATTCCAGGCATGGTGAAGCGCAAACTGGAAGCGAGCAATGATATCTACCAGACCTTTATTG‑CTCACACCATTGATACACCTGAAAAATTCGAAGCCAAACGCGCGGACCTTGCCGAGCGTGAATCGGCGCGAATGAAAGAAAC‑C‑ACATCGGCA‑ACCTGCCCCTCCTGCCCTAACTACAATGCGATGGATCATGCGAAGCAGCCTCCCAATGCATCACGTc                                                                                                                                                                     >  2:739429/1‑239 (MQ=255)
                                                                               cgc‑cgGATATTCCAGGCATGGTGAAGCGCAAACTGGAAGCGAGCAATGATATCTACCAGACCTTTATTG‑CTCACTCCATTGATACACCTGAAAAATTCGAAGCCAAACGCGCGGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAA‑C‑AACTCGGCA‑ACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAgggg                                                                                                                                                          >  2:705152/1‑237 (MQ=255)
                                                                               cgc‑cgGATATTCCAGGCATGGTGAAGCGCAAACTGGAAGCGAGCAATGATATCTACCAGACCTTTATTG‑CTCACTCCATTGATACACCTGAAAAATTCGAAGCCAAACGCGCGGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAA‑C‑AACTCGGCA‑ACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTg                                                                                                                                                          >  2:77627/1‑239 (MQ=255)
                                                                               cccccgattttcccggggttGGTAAGGCACAAAAGGGAAGCAAGCAATGATCTCTCCCAGCCTTTTATCGCCTCAC‑CGATTGATACACTTAAAAAATTCGAAGCCAAACGCGCGAAACGTGCCGGGGGTAAATGGGCGCGAAAGAAAAAAAC‑C‑AACTCGGAA‑ACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGt                                                                                                                                                           <  1:1034550/220‑1 (MQ=255)
                                                                                 c‑cgGCTATTCCAGACATCGTGAAGCGCAAACTGGAAGCGAGCAATGATATCTACCAGACCTTTATTG‑CTCACTACATTGATACACCTGGAAAATTCGAAGCCAAACGCACGGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAA‑C‑AACCCCGCA‑ACCCGCCGCTCCGGGCCTAACTACGCGGGGTGGGATACTGCGCAGAAGCATCCTGACACCACACGTAAGATGAgggggac                                                                                                                                                        >  1:993130/1‑235 (MQ=255)
                                                                                 c‑cgGATATTCCAGGCATGGTGAAGCGCAAACTGGAAGCGAGCAATGATATCTACCAGACCTTTATTG‑CTCACTCCCTTGATACACCTGAAAAATTCGAAGCCAAACGCGCGGACCTTGCCGAGCGTGGATGGGCGCGGATGACAGAAAA‑C‑AACTCGGCA‑ACCTGCCGCTCATGCCATAACTACGATGCCATGGAATATGGGACGCAGCATCACAACGCAGAAAGGCAGATGAAgggagc                                                                                                                                                        >  1:1229145/1‑235 (MQ=255)
                                                                                 c‑cgGATATTCCAGGCATGGTGAAGCGCAAACTGGAAGCGAGCAATGATATCTACCAGACCTTTATTG‑CTCACTCCATTGATACACCTGAAAAATTCGAAGCCAAACGCGCGGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAA‑C‑AACTCGGCA‑ACCTGCCGCTCCTGCCATAACTACGCTGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCAGGTCAGATGAAGGTGGc                                                                                                                                                        >  2:44604/1‑239 (MQ=255)
                                                                                                   ggTGAAGCGCAAACTGGAAGCGAGCAATGATATCTACCAGACCTTTATTG‑CTCACTCCATTGATACACCTGAAAAATTCGAAGCCAAACGCGCGGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAA‑C‑AACTCGGCA‑ACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATaatcaa                                                                                                                                        >  2:1133707/1‑238 (MQ=255)
                                                                                                   ggTGAAGCGCAAACTGGAAGCGAGCAATGATATCTACCAGACCTTTATTG‑CTCACTCCATTGATACACCTGAAAAATTCGAAGCCAAACGCGCGGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAA‑C‑AACTCGGCA‑ACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATaatcaa                                                                                                                                        >  2:598343/1‑238 (MQ=255)
                                                                                                   ggTGAAGCGCAAACTGGAAGCGAGCAATGATATCTACCAGACCTTTATTG‑CTCACTCCATTGATACACCTGAAAAATTCGAAGCCAAACGCGCGGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAA‑C‑AACTCGGCA‑ACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCACCATCCTGAAGCACCACGTCAAATGAAGGGGGCAGCGAAAAAAaaccaa                                                                                                                                        >  1:23476/1‑238 (MQ=255)
                                                                                                              acttGGAAGCGAGTAATGTTTTCTCTCGGTCTTTTTTTG‑TTCAATCTAGTGATCCCCCTGAAAAAATCGAGGAAAAGCGCGCGTAACTTTCCAGGCGTGAATGGGCGCGAATGAAAGAAAC‑C‑AACTCGGCA‑ACCTGCCGCTCCTGCCATAACTACTATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGAc                                                                                                                            <  1:583473/236‑1 (MQ=255)
                                                                                                              aaCGGGAAGCGAGCAATGATATCTACACGTCCTTTATTG‑CTCCACCCATTGATACCCCTGAAAAATTCGAAGCCAAACGCGGGGAACTTGCCGAGCGTTAATGGGCGCGAATGAAAGAAAA‑C‑AACTCGGCA‑ACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGAc                                                                                                                            <  2:894840/239‑1 (MQ=255)
                                                                                                               aCTGGAAGCGAGCAATGATATCTACCAGACCTTTATTG‑CTCACTCCATTGATACACCTGAAAAATTCGAAGCCAAACGCGCGGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAA‑C‑AACTCGGCA‑ACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGAc                                                                                                                            >  2:1028257/1‑238 (MQ=255)
                                                                                                                         aGCAATGATATCTACCAGACCTTTATTG‑CTCACTCCATTGATACACCTGAAAAATTCGAAGCCAAACGCGCGGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAA‑C‑AACTCGGCA‑ACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGCTAATCAATCCTGCATCGACTGC‑CTTAAAgg                                                                                                                >  2:861752/1‑239 (MQ=255)
                                                                                                                           cAATGATATCTACCAGACCTTTATTG‑CTCACTCCATTGATACACCTGAAAAATTCGAAGCCAAACGCGCGGAACTTGCCGAGCGTGAATGGTCGCGAATGAAAGAAAA‑C‑AACTCGGCA‑ACCGGCCGCTCCTGCCATAACAACGATGCCATGGATCATGCGAAGAAGCATCCTGAAGCAGACCGCCAGATGAAGGGGGCAGCGAAAGATAATCAAACCTGCAACGCAGGT‑CAAAAAggga                                                                                                              >  1:225080/1‑237 (MQ=255)
                                                                                                                           aaatgatatcatccatctttttATGG‑CCCACCCCATTATTACACTGGAAAAGTCGGAACCCAACCGCGCGAACCTGCCCGCGCGTGAAGGGGCGAGAATGAAAAAAAA‑C‑ACCCCGGCA‑CCCGGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGT‑CATAAAGGTa                                                                                                              <  1:598343/220‑1 (MQ=255)
                                                                                                                              tGATATCTACCAGACCTTTATTG‑CTCACTCCATTGATACACCTGAAAAATTCGAAGCCAAACGCGCGGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAA‑C‑AACTCGGCA‑ACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATAAAGGGTGCAGCGAAAGATAATCAATCCTGCATCGACCGT‑CACAAAGGCAtt                                                                                                            >  2:181079/1‑238 (MQ=255)
                                                                                                                                 tttctcCCAGCCCTTTGTTG‑CCCACGCCAGAGATCCCCCGGAAAAATCTAAAGCCACAGGCGAGCAACTGGCCGGGGGTGGGGGGGGGCGAGTGAAAAAAAA‑C‑AACGGGGAA‑ACCTGCCCCTCCTGCCAAAACTACGAAGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAAGCCTGCATCGACTGT‑CATAAAGGTATTGccc                                                                                                        <  1:979253/237‑1 (MQ=255)
                                                                                                                                   tctcCCAGACCTTTATTG‑CCCCCTCCATTGATACCCCTGAAAAATTCGAAGCCAAACGCGCGGAACTTGCCGGGCGTGAATGGGCGCGAATGAAAGAAAA‑C‑AACTCGGCA‑ACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGT‑CATAAAGGTATTGCccac                                                                                                      <  2:161991/239‑1 (MQ=255)
                                                                                                                                        cAGACCTTTATTG‑CTCACTCCATTGATACACCTGAAAAATTCGAAGCCAAACGCGCGGAACTTGCCGAGCGTGAATGGGCGCGCATGCAAGAAAA‑C‑AACTCGGCA‑ACCTGCCGCTCCTGCCATAACTACGATGCGATGCATCCTGCGAGGCAGCAGCCTAAAGCAGCCCGTCAGATGTAGGGGCCACGGAAAGATAATCAATCCTGGATCGATTGT‑AAAAAAGGTAtaggcaccaagtt                                                                                                 >  1:353855/1‑227 (MQ=255)
                                                                                                                                             cTTTATTG‑CCCACCCCATGGATACACCTGAAAAATCAGAAGCCAAACGCGCGGACCTTGCCGAGCGTGAAGGGGCGCGAATGAAAGAAAA‑C‑AACTCGGCA‑ACCTGCCGCTCCTGCCATAACTACGATGCGATGGa                                                                                                                                                                                                     <  1:18267/135‑1 (MQ=255)
                                                                                                                                               ttATTG‑CTCACTCCATTGATACACCTGAAAAATTCGAAGCCAAACGCGCGGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAA‑C‑AACTCGGCA‑ACCTGCCGCTCCTGCCCTAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGCCTGT‑CATAACGGAATTGCCCACCCGTTACCggct                                                                                          >  2:740333/1‑237 (MQ=255)
                                                                                                                                               ttATTG‑CTCACCCCATTGATACACCTGAAAAATTCGAAGCCAAACTCGCGGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAA‑C‑AACTCGGCA‑ACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACTCCAGATGAAGGGGGCAGCGAAAGAAAATCAATCCTGCATCGACGGT‑CATAAAGGAATTGCCCACCACTAACCGGaa                                                                                          >  1:542497/1‑238 (MQ=255)
                                                                                                                                                tATTG‑CTCACTCCATTGATACACATGAAAAATTCGAAGCCAAACGCGCGGAACTTGCCGAGCGTGAATGGACGCGAATGAAAGAAAA‑C‑AACTCGGCA‑ACCTGCCGCTCCTACCATAACTACGATGCGATGGATCAAGCGAAGCAGCATCCTGAAACAGCACGCCAGAGGAAGGTGGCAGCGAAAGCCAATCAATCCCTAACCACCTGT‑CATAAACGTATTCCCCACCAGTTACCGGaaa                                                                                         >  1:80642/1‑237 (MQ=255)
                                                                                                                                                    g‑CTCACTCCATTGATACACCTGAAAAATTCGAAGCCAAACGCGCGGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAA‑C‑AACTCGGCA‑ACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGT‑CATAAAGGAATTGCCCACCAGTTACCGGAT‑ATGAg                                                                                    >  2:1154421/1‑239 (MQ=255)
                                                                                                                                                        cACTCCATTGATACACCTGAAAAATTCGAAGCCAAACGCGCGGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAA‑C‑AACTCGGCA‑ACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAag                                                                                                                                                                                           >  2:18267/1‑135 (MQ=255)
                                                                                                                                                        cACTCCATTGATACACCTGAAAAATTCGAAGCCAAACGCGCGGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAA‑C‑AACTCGGCA‑ACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCCCGTCAGATGAAGGGGGCAGCGAAAGATAATCAATCCTGAACCGACTGA‑CATAAAGAAATTCCCCACCAGtaaacagaaaaggataa                                                                                  >  1:1089833/1‑223 (MQ=255)
                                                                                                                                                        cACTCCATTGATACACCTGAAAAATTCGAAGCCAAACGCGCGGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAA‑C‑AACTCGGCA‑ACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGT‑CATAAAGGTATTGCCCACCAGTTACCGGAT‑ATGAGTa                                                                                  >  2:1245501/1‑238 (MQ=255)
                                                                                                                                                        cACTCCATTGATACACCTGAAAAATTCGAAGCCAAACGCGCGGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAA‑C‑AACTCGGCA‑ACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGT‑CATAAAGGTATTGCCCACCAGTTACCGGAT‑ATGAGTa                                                                                  >  2:264640/1‑238 (MQ=255)
                                                                                                                                                        cACTCCATTGATACACCTGAAAAATTCGAAGCCAAACGCGCGGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAA‑C‑AACTCGGCA‑ACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGCGGCAGCGAAAGATAATCAATCCTGCATCGCCTGT‑CATAAAGGTATTGCCCACCAGTTACCGGAA‑TTGAGTAg                                                                                 >  2:1286081/1‑239 (MQ=255)
                                                                                                                                                          cTCCATTGATACACCTGAAAAATTCGAAGCCAAACGCGCGGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAA‑C‑AACTCGGCA‑ACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGT‑CATAAAGGTATTGc                                                                                                          >  2:546525/1‑213 (MQ=255)
                                                                                                                                                           tCCATTGATACACCTGAAAAATTCGAAGCCAAACGCGCGGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAA‑C‑AACTCGGCA‑ACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAACCAGCATCCTGAACCCGCACGTCAGATGAAGGGGCCAGGGAAAGAAAATAAATCCTGCATCGCCTGC‑CATAAAGGAATTGCCCCCCAATTACCGGAA‑ATGAGAAGCgg                                                                              >  1:713904/1‑239 (MQ=255)
                                                                                                                                                           ccctttgacacacagaaaaaaTTCGAAACCGAAGGGGGGAAACTAGGCGAGAGGGAGGGGGGGGGAGTGAAAAAAAA‑C‑AACGGGGAC‑ACGGACCGCCCCTGGCGAGACTGCGAAGCGTAGGATCATGCGAAGAAGCATCCTGAAGCAGCACGTCAGATTAAGGTGGCAGCGAAAGATAATCAGTCCTGCATCGACTGT‑CATAAAGTTATAGCCCACCAGTTACCGGAT‑ATGAGTAGCgg                                                                              <  1:1164004/223‑1 (MQ=255)
                                                                                                                                                                tGATACACCTGAAAAATTCGAAGCCAAACGCGCGGAACTTGCCGAGCGTGACTGGGCGCGAATGAAATAAAA‑C‑AACCCGCCA‑ACCTGCAGCTCCTGCCATAACTACGGTAGGATGGATCATGCGAATCAGCGTCCTGAATAAGAAGCTCAGATGAAGGGGGCAGCGAAAGAAAATCAATCCTGCAACG‑CAGTGAATAAAGTAATGGCCCACCAGGTA‑CGGATAATAAGAAGCGGCATcg                                                                         >  1:1165028/1‑238 (MQ=255)
                                                                                                                                                                     cacCTGAAAAATTCGAAGCCAAACGCGCGGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAA‑C‑AACTCGGCA‑ACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAg                                                                                                                                                             >  2:1009887/1‑152 (MQ=255)
                                                                                                                                                                     cacCTGAAAAATTCGAAGCCAAACGCGCGGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAA‑C‑AACTCGGCA‑ACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGTCAGCGAAAGATACTCAATCCTGCATCGACTGT‑CATAAAGGCATTGCCACCCAGTTACCGGAT‑ATGAGATGCGGCCTCCGTaa                                                                     >  2:965654/1‑238 (MQ=255)
                                                                                                                                                                     cacCTGAAAAATTCGAAGCCAAACGCGCGGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAA‑C‑AACTCGGCA‑ACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGT‑CTTAAAGGCATTGCCAACCCGTTACCGGAC‑ATGAGTAGCGGCTTCCGTaa                                                                     >  2:1164004/1‑238 (MQ=255)
                                                                                                                                                                     cacCTGAAAAATTCGAAGCCAAACGCGCGGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAA‑C‑AACTCGGCA‑ACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGT‑CATAAAGGTATTGCCCACCAGTTACCGGAT‑ATGAGTAGCGGCTTCCGTaa                                                                     >  2:1071766/1‑238 (MQ=255)
                                                                                                                                                                     cacCTGAAAAATTCGAAGCCAAACGCGCGGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAA‑C‑AACTCGGCA‑ACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGT‑CATAAAGGTATTGCCCACCAGTTACCGGAT‑ATGAGTAGCGGCTTCCGTAAg                                                                    >  2:39847/1‑239 (MQ=255)
                                                                                                                                                                     cacCTGAAAAATTCGAAGCCAAACGCGCGGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAA‑C‑AACTCGGCA‑ACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGT‑CATAAAGGTATTGCCCACCAGTTACCGGAT‑ATGAGTAGCGGCGTCCGTaa                                                                     >  2:1113713/1‑238 (MQ=255)
                                                                                                                                                                     cacCTGAAAAATTCGAAGCCAAACGCGCGGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAA‑C‑AACTCGGCA‑ACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGT‑CATAAAGGAATTGCCCACCAGTTACCGGAT‑ATGAGTAGCGGCTTCCGTaa                                                                     >  2:904718/1‑238 (MQ=255)
                                                                                                                                                                     cacCTGAAAAATTCGAAGCCAAACGCGCGGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAA‑C‑AACTCGGCA‑ACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGT‑CATAAAGGAATTGCCCACCAGTTACCGGAT‑ATGAGTACCGGCTTCCGTAAg                                                                    >  2:1183868/1‑239 (MQ=255)
                                                                                                                                                                       ccagAAAAATTAAAACCAAAAGCCGGGGAACTGGCCGGGGGTAAATGGGCG‑GAAAGAAAAAAAA‑CAAACCGGGCA‑ACCTGCCCTCCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGT‑CATAAAGGTATTGCCCACCAGTTACCGGAT‑ATGAGTAGCGGCTTCCGTAAGCa                                                                  <  1:904718/236‑1 (MQ=255)
                                                                                                                                                                       ccTGAAAAATTCGAAGCCAAACGCGCGGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAA‑C‑AACTCGGCA‑ACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGT‑CATAAAGGTATTGCCCACCAGTTACCGGAT‑ATGAGTAGCGGCTTCCGTAAGCa                                                                  >  2:713434/1‑239 (MQ=255)
                                                                                                                                                                       ccTGAAAAATCCGAAGCAAAACGCCGGGACCTTGCCGAGGGTGAATGGGCGCGAATGAAAGAAAA‑C‑ACCCCGGCA‑ACCGGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGT‑CATAAAGGTATTGCCCACCAGTTACCGGAT‑ATGAGTAGCGGCTTCCGTAAGCa                                                                  <  2:349475/239‑1 (MQ=255)
                                                                                                                                                                                         aagcgcgggGAATTTGCAGGGGGTGAATGGGCCGGAAGGAAAGAAAA‑C‑AACTCGGAA‑CCCTGCCGCCCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGT‑CATAAAGGTATTGCCCACCAGTTACCGGAT‑ATGAGTAGCGGCTTCCGTAAGCAGTTCGATGAGCTgcgcgc                                                <  2:732281/236‑1 (MQ=255)
                                                                                                                                                                                         aaaCGCGCGGAACTTGCCGGGCGTGAATGGGCGCGAATGAAAGAAAA‑C‑AACTCGGCA‑ACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGT‑CATAAAGGTATTGCCCACCAGTTACCGGAT‑ATGAGTAGCGGCTTCCGTAAGCAGTTCGATGAGCTgcgcgc                                                <  2:1161302/239‑1 (MQ=255)
                                                                                                                                                                                         aaaCGCGCGGAACTTGCCGAGGGGAAAGGGGCCCGAATGAAAAAAAA‑C‑AACCCGGCA‑ACCTGCCCCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGT‑CATAAAGGTATTGCCCACCAGTTACCGGAT‑ATGAGTAGCGGCTTCCGTAAGCAGTTCGATGAGCTgcgcgc                                                <  2:542497/239‑1 (MQ=255)
                                                                                                                                                                                              cggagtctttGACGGGCGTGAGGGGGGGAAAAAGAAAAAAAA‑C‑‑ACCCGGCAGATCTGCCCGTCCGGCCCACACTACGATACGATTGGACATGGTAAGGAATATCCTGAAGCAGCAAGGCAGGTGAAGGTGGCAGGGAAAGATAATCATTCCTGCATCGAATGT‑CATAAAGGTATTGCCCACCAGTTGCCGGAT‑ATGAGTAGCGGCTTCCGTAAGCAGTTCGATGGGCTGCGCGCCa                                              <  1:1213253/228‑1 (MQ=255)
                                                                                                                                                                                                cggaccttccgcggCGTGAATGGGCGGGAAGAAAAGAAAA‑C‑AACCGGGCA‑CCCGGCCCCCCCTGGCAAAACGACGATGGGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGT‑CATAAAGGTATTGCCCACCAGTTACCGGAT‑ATGAGTAGCGGCTTCCGTAAGCAGTTCGATGAGCTGCGCGCCAGTGCt                                         <  1:1183868/226‑1 (MQ=255)
                                                                                                                                                                                                     ctggcggggCGGGAAGGGGCGCGAATGAAAGAAAA‑C‑AACTCGGCA‑ACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGT‑CATAAAGGTATTGCCCACCAGTTACCGGAT‑ATGAGTAGCGGCTTCCGTAAGCAGTGCGATGAGCTGCGCGCCAGTGCTAATGa                                    <  2:498237/231‑1 (MQ=255)
                                                                                                                                                                                                             gCGTGAATGGGCGCGAATGAAAGAAAA‑C‑AACTCGGCA‑ACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGT‑CATAAAGGAATTGCCCACCAGTTACCGGAT‑ATGAGAAGCGGCTTCCGTAAGCAGTTCGATGAGCTGCGCGCCCGTGCTACTGACAgtggtg                            >  2:674334/1‑239 (MQ=255)
                                                                                                                                                                                                                 aaaggggCGCAAAGAAAAGAAAA‑C‑AACCCGGAC‑ACCCGCCGCTCCTGCCATAACTGCGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGT‑CATAAAGGTATTGCCCACCAGTTACCGGAT‑ATGAGTAGCGGCTTCCGTAAGCAGTTCGATGAGCTGCGCGCCAGTGCTAATGACAGTGGTGaca                         <  2:225080/234‑1 (MQ=255)
                                                                                                                                                                                                                  gaagggCGCGAAAAAAAAAAAACC‑AACTCGGCA‑ACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGT‑CATAAAGGTATTGCCCACCAGTTACCGGAT‑ATGAGTAGCGGCTTCCGTAAGCAGTTCGATGAGCTGCGCGCCAGTGCTAATGACAGTGGTGaca                         <  2:914099/235‑1 (MQ=255)
                                                                                                                                                                                                                  atggggCGAGAATAAAACAAAA‑C‑CACCTGGCA‑ACCGTCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGT‑CATAAAGGTAGTGCCCACCAGTTACCGGAT‑ATGAGTAGCGGCTTCCGTAAGCAGTTCGATGAGCTGCGCGCCAGTGCTAATGACAGTGGTGACACg                       <  1:193097/236‑1 (MQ=255)
                                                                                                                                                                                                                  aaTGGGCGGAAATAAAAAAAAC‑C‑AACCCGGCA‑CCCCGCCCCCCCTGCCATAACTACGAGGCGAAGGATCATGCGAAGCAGCATCCTGAAGACGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGC‑CATAAAGGTATTGCCCACCAGTTACCGGAT‑ATGAGTAGCGGCTTCCGTAAGCAGTTCGATGAGCTGCGCGCCAGTGCTAATGACAGTGGTGACACg                       <  1:1028257/239‑1 (MQ=255)
                                                                                                                                                                                                                   tggggCGCAAAGGAAAAAAAA‑A‑CACCGGGCA‑CCCTCCCTCTCCTGCCATAACTGCGATGCGATGGATCATGCGAAGCAGCATTCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGT‑CATAAAGGTATTGCCCACCAGTTACCGGAT‑ATGAGTAGCGGCTTCCGTAAGCAGTTCGATGAGCTGCGCGCCAGTGCTAATGACAGTGGTGACACg                       <  1:1245501/236‑1 (MQ=255)
                                                                                                                                                                                                                   aTGGGCGCGAATGAAAGAAAA‑C‑AACCCGGCA‑ACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGT‑CATAAAGGTATTGCCCACCAGTTACCGGAT‑ATGAGTAGCGGCTTCCGTAAGCAGTTCGATGAGCTGCGCGCCAGTGCTAATGACAGTGGTGACACg                       <  2:713904/238‑1 (MQ=255)
                                                                                                                                                                                                                   aTGGGCGCAAATGAAAGAAAA‑C‑AACCGGGCA‑ACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGT‑CATAAAGGTATTGCCCACCAGTTACCGGAT‑ATGAGTAGCGGCTTCCGTAAGCAGTTCGATGAGCTGCGCGCCAGTGCTAATGACAGTGGTGACACg                       <  2:23476/238‑1 (MQ=255)
                                                                                                                                                                                                                        ggatattGAAAGAAAA‑C‑AACAGGACA‑GCCTGCCGCCCCTGCCATAGATGCTATGCGATGGAGCATGCGAAGCAGCAGCCTGAAGCAACACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGT‑CATAAAGGTATTGCCCACCAGTTACCGGAG‑ATGAGTAGCGGCTTCCGTAAGCAGTTCGATGAGCTTCGCGCCAGTGCTAATGACAGTGGTGACACGCTGTa                  <  1:500760/232‑1 (MQ=255)
                                                                                                                                                                                                                        gagaaaTAAAAAAAAA‑A‑ACCCCGGGA‑ACCGGCCCCCCCGGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGT‑CATAAAGGTATTGCCCACCAGTTACCGGAT‑ATGAGTAGCGGCTTCCGTAAGCAGTTCGATGAGCTGCGCGCCAGTGCTAATGACAGTGGTGACACGCTGTa                  <  1:1071766/234‑1 (MQ=255)
                                                                                                                                                                                                                        cgcgAAGAAAAAAAAA‑A‑AACTCGGAA‑ACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGT‑CATAAAGGTATTGCCCACCAGTTACCGGAT‑ATGAGTAGCGGCTTCCGTAAGCAGTTCGATGAGCTGCGCGCCAGTGCTAATGACAGTGGTGACACGCTGTa                  <  2:1209093/238‑1 (MQ=255)
                                                                                                                                                                                                                         gagAATGAAATAAAA‑C‑AATGCGCAA‑ACCTGCCGCTCCTGGCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGT‑CATAAAGGTATTGCCCACCAGTTACCGGAT‑ATGAGTAGCGGCTTCCGTAAGCAGTTCGATGAGCTGCGCGCCAGTGCTAATGACAGTGGTGACACGCTGTAc                 <  2:519696/236‑1 (MQ=255)
                                                                                                                                                                                                                          gcgaaacgaacaaaacgaccTCGGAA‑ACCGGCCGGTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGT‑CATAAAGGTATTGCCCACCAGTTACCGGAT‑ATGAGTAGCGGCTTCCGTAAGCAGTTCGATGAGCTGCGCGCCAGTGCTAATGACAGTGGTGACACGCTGTa                  <  2:656020/219‑1 (MQ=255)
                                                                                                                                                                                                                                       a‑c‑aacCCGGAA‑CCCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGT‑CATAAAGGTATTGCCCACCAGTTACCGGAT‑ATGAGTAGCGGCTTCCGTAAGCAGTTCGATGAGCTGCGCGCCAGTGCTAATGACAGTGGTGACACGCTGTACTCTATTGATATTAAg  <  2:502384/239‑1 (MQ=255)
                                                                                                                                                                                                                                              |                                                                                                                                                                                                                                            
GTGTATGAAGAATATAAACAGTCGGTGCATTTCCAGAACGCCTCCGGCGTGCGAGCTGAATGCCATGACTGTCATATCCCGC‑CGGATATTCCAGGCATGGTGAAGCGCAAACTGGAAGCGAGCAATGATATCTACCAGACCTTTATTG‑CTCACTCCATTGATACACCTGAAAAATTCGAAGCCAAACGCGCGGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAA‑C‑AACTCGGCA‑ACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGT‑CATAAAGGTATTGCCCACCAGTTACCGGAT‑ATGAGTAGCGGCTTCCGTAAGCAGTTCGATGAGCTGCGCGCCAGTGCTAATGACAGTGGTGACACGCTGTACTCTATTGATATTAAG  >  NC_000913/1058252‑1058719

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A