Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A4 F27 I0 R1 322 127.1 2757226 91.8% 2531133 223.7

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 1,058,486 T→C 18.4% S135P (TCG→CCG)  torC → trimethylamine N‑oxide (TMAO) reductase I, cytochrome c‑type subunit

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,058,4860TC18.4% 300.7 / 13.2 161S135P (TCG→CCG) torCtrimethylamine N‑oxide (TMAO) reductase I, cytochrome c‑type subunit
Reads supporting (aligned to +/- strand):  ref base T (79/38);  new base C (9/24);  total (89/72)
Fisher's exact test for biased strand distribution p-value = 4.75e-05
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 161 total aligned reads displayed.

GTGTATGAAGAATATAAACAGTCGGTGCATTTCCAGAACGCCTCCGGCGTGCGAGCTGAATGCCATGACTGTCATATCCCGCCGGATATTCCAGGCATGGTGAAGCGCAAACT‑GGAAGCGAGCAATGATATCTACCAGA‑CCTTTATTGCTCACTCCATTGATACAC‑C‑TGAAAAATTCGAA‑GCCAAACG‑CGC‑GGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAACAACTCGGCA‑A‑CCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGAC‑TGTCATAAAGGTATTGCCCACCAGTTACCGGATATGAGTAGCGGCTTCCGTAAGCAGTTCGATGAGCTGCGCGCCAGTGCTAATGACAGTGGTGACACGCTGTACTCTATTGATATTAAG  >  NC_000913/1058252‑1058719
                                                                                                                                                                                                                                                 |                                                                                                                                                                                                                                            
gtgtATGAAGAATATAAACAGTCGGTGCATTTCCAGAACGCCTCCGGCGTGCGAGCTGAATGCCATGACTGTCATATCCCGCCGGATATTCCAGGCATGGTGAAGCGCAAACT‑GGAAGCGAGCAATGATATCTACCAGA‑CCTTTATTGCTCCCTCCATTGCTACAC‑C‑TGAAAAATTCGAA‑GCCAAACG‑CGC‑GGAACTTGCCGAGCGTGAATGGGGGCGAAAGAAAAAAAAAAACCCGGc                                                                                                                                                                                                                                          >  2:373889/1‑239 (MQ=255)
gtgtATGAAGAATATAAACAGTCGGTGCATTTCCAGAACGCCTCCGGCGTGCGAGCTGAATGCCATGACTGTCATATCCCGCCGGATATTCCAGGCATGGTGAAGCGCAAACT‑GGAAGCGAGCAATGATATCTACCAGA‑CCTTTATTGCTCACTCCATTGCTACAC‑C‑TGAAAAATTCGAA‑GCCAAACG‑CGC‑GGAACTTGCCGAACGTGAATGGGCGCGAATGAAAAAAAAAAACCCgga                                                                                                                                                                                                                                          >  2:296139/1‑238 (MQ=255)
gtgtATGAAGAATATAAACAGTCGGTGCATTTCCAGAACGCCTCCGGCGTGCGAGCTGAATGCCATGACTGTCATATCCCGCCGGATATTCCAGGCATGGTGAAGCGCAAACT‑GGAAGCGAGCAATGATATCTACCAGA‑CCTTTATTGCTCACTCCATTGATACAC‑C‑TGAAAAATTCGAC‑GCCAAACG‑CGC‑CGAACTTGCCGAGCGGGACTGGGCGCGAATGAACGAAAACAACTCGGc                                                                                                                                                                                                                                          >  1:559244/1‑239 (MQ=255)
gtgtATGAAGAATATAAACAGTCGGTGCATTTCCAGAACGCCTCCGGCGTGCGAGCTGAATGCCATGACTGTCATATCCCGCCGGATATTCCAGGCATGGTGAAGCGCAAACT‑GGAAGCGAGCAATGATATCTACCAGA‑CCTTTATTGCTCACTCCATTGATACAC‑C‑TGAAAAATTCGAA‑GCCAAACG‑CGC‑GGAACTTGCCGAGCGCGAATGGGGGCGAATGAAAGAAAACAACACgcc                                                                                                                                                                                                                                          >  1:1129459/1‑237 (MQ=255)
gtgtATGAAGAATATAAACAGTCGGTGCATTTCCAGAACGCCTCCGGCGTGCGAGCTGAATGCCATGACTGTCATATCCCGCCGGATATTCCAGGCATGGTGAAGCGCAAACT‑GGAAGCGAGCAATGATATCTACCAGA‑CCTTTATTGCTCACTCCATTGATACAC‑C‑TGAAAAATTCGAA‑GCCAAACG‑CCC‑GGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAACAACTCGGc                                                                                                                                                                                                                                          >  1:854925/1‑239 (MQ=255)
gcgtATGAAGAATATAAACAGTCGGGGCATTTCCAGAAAGCCTCCGGCGTACGAGCTGAATGCCATGACTGTCATATACCGCCGGATATTCCAGGCATGGTGAAGCGCAAACT‑GGAAGCGAGCAATCATATTTACGCGA‑CCTTTATTCCTCACTCCATTGAAACAC‑C‑TGAAAAATTCGTA‑CCCCAAAG‑CGC‑GCCACTGGCCGTGCGTGAAAGGCCGGGAAGGAAAAAAACAAACTCgga                                                                                                                                                                                                                                          >  2:1087369/3‑238 (MQ=255)
  gtATGAAGAATATAAACAGTCGGTGCATTTCCAGAACGCCTCCGGCGTGCGAGCTGAATGCCATGACTGTCATATCCCGCCGGATATTCCAGGCATGGTGAAGCGCAAACT‑GGAAGCGAGCAATGATATCTACCAGA‑CCTTTATTGCTCACTCCATTGATACAC‑C‑TGAAAAATTCGAA‑GCCAAACG‑CGC‑GGACCTTGCCGAGCGTGAATGGGCGCGAATGAAAAAAAAAAAACCGGCa                                                                                                                                                                                                                                         >  2:1124251/1‑238 (MQ=255)
       gagaaTAAAAACGGTGGGGGGATTGCCAGAAGGCCGCCGGCGGGGGGGCAGAATCCAGAGAATGGCATACCCCGACGGATTTTCAGGGCATGGTGAAGCGCAAACG‑GGAAGCGAGCAATGATACCTACCAGA‑CCTTTATGGCGCACTCCATGGATACAC‑C‑TGAAAAATGCGAA‑GCCAAACG‑CGC‑GGACCTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAACAACTCGGCA‑A‑CCTGc                                                                                                                                                                                                                                 <  2:200245/238‑1 (MQ=255)
       aaaaataaaaacctgcgggccATTTCCAAAACCCCCCCGGCGGGGAGGTTGAATGCCATGACTGCCAATCCCCGCCGGATTTCCCAGGCATGGGGAAGCGCAAACT‑GGAAGCGAGCAATGATATCTACCAGC‑CCTTTATTGCTCACTCCATTGATACAC‑C‑TGAAAAATTCGAA‑GCCAAACG‑CGC‑GGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAACAACTCGGCA‑A‑CCTGc                                                                                                                                                                                                                                 <  2:1371530/219‑1 (MQ=255)
           atatAAACAGTCGGTGCATTTCCAGAACGCCTCCGGCGTGCGAGCTGAATGCCATGACTGTCATATCCCGCCGGATATTCCAGGCATGGTGAAGCGCAAACT‑GGAAGCGAGCAATGATATCTACCAGA‑CCTTTATTGCTCACTCCATTGATACAC‑C‑TGAAAAATTCGAA‑GCCAAACG‑CGC‑GGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAACAACTCGGAA‑A‑CCTGCCGc                                                                                                                                                                                                                              >  1:951001/1‑238 (MQ=255)
             ataAACGGTCGGTGCTGTCCCAGAACGCCTCCGGCGTGCGAGCTGAAGCCCATGACTTTCATATCCCGCCGGATATTCCAGGAATGGTGAAGCGCAAACT‑GGAAGCGAGCAATGATATCTCCCAAC‑CCTTTATTGCTCACTCCATTGATACAC‑C‑TGAAAAATTCGAA‑GCCAAACG‑CGC‑GGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAACAACTCGGCA‑A‑CCTGCCGCTcc                                                                                                                                                                                                                           <  1:132067/239‑1 (MQ=255)
             ataAACAGTCGGTGCATTTCCAGAACGCCTCCGGCGTGCGAGCTGAATGCCATGACTGTCATATCCCGCCGGATATTCCAGGCATGGTGAAGCGCAAACT‑GGAAGCGAGCAATGATATCTACCAGA‑CCTTTATTGCTCACTCCATTGATACAC‑C‑TGAAAAATTCGAA‑GCCAAACG‑CGC‑GGAACTTGCCGAGCGAGAATGGGCGGGAATAAAAGAAAACAAACCGGAA‑A‑CCTAccccccc                                                                                                                                                                                                                           >  2:132067/1‑234 (MQ=255)
                    gTCGGTGCATTTCCAGAACGCCTCCGGCGTGCGAGCTGAATGCCATGACTGTCATATCCCGCCGGATATTCCAGGCATGGTGAAGCGCAAACT‑GGAAGCGAGCAATGATATCTACCAGA‑CCTTTATTGCTCACTCCATTGATACAC‑C‑TGAAAAATTCGAA‑GCCAACCG‑CGC‑GGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAACAAAACAGGCA‑A‑CCTCCCGCCCCTGCCATa                                                                                                                                                                                                                    >  1:635306/1‑239 (MQ=255)
                    gTCGGTGCATTTCCAGAACGCCTCCGGCGTGCGAGCTGAATGCCATGACTGTCATATCCCGCCGGATATTCCAGGCATGGTGAAGCGCAAACT‑GGAAGCGAGCAATGATATCTACCAGA‑CCTTTATTGCTCACTCCATTGATACAC‑C‑TGAAAAATTCGAA‑GCCAACCG‑CGC‑GGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAACAACCCGGCA‑A‑CCTGCCGCTCCTGCCATa                                                                                                                                                                                                                    >  2:514237/1‑239 (MQ=255)
                    gTCGGTGCATTTCCAGAACGCCTCCGGCGTGCGAGCTGAATGCCATGACTGTCATATCCCGCCGGATATTCCAGGCATGGTGAAGCGCAAACT‑GGAAGCGAGCAATGATATCTACCAGA‑CCTTTATTGCTCACTCCATTGATACAC‑C‑TGAAAAATTCGAA‑GCCAAACG‑CGC‑GGACATTGCCGAGCGTGAATGGGCGCGACTGAAAGAAAAAAACTCGGCA‑A‑CCTTCCGCCCCTGCCaaa                                                                                                                                                                                                                    >  2:1123351/1‑237 (MQ=255)
                    gTCGGTGCATTTCCAGAACGCCTCCGGCGTGCGAGCTGAATGCCATGACTGTCATATCCCGCCGGATATTCCAGGCATGGTGAAGCGCAAACT‑GGAAGCGAGCAATGATATCTACCAGA‑CCTTTATTGCTCACTCCATTGATACAC‑C‑TGAAAAATTCGAA‑GCCAAACG‑CGC‑GGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAACAACTCGGCA‑A‑CCTGCCGCGCCTGCCATa                                                                                                                                                                                                                    >  1:334687/1‑239 (MQ=255)
                    gTCGGTGCATTTCCAGAACGCCTCCGGCGTGCGAGCTGAATGCCATGACTGTCATATCCCGCCGGATATTCCAGGCATGGTGAAGCGCAAACT‑GGAAGCGAGCAATGATATCTACCAGA‑CCTTTATTGCTCACTCCATTGATACAC‑C‑TGAAAAATTCGAA‑GCCAAACG‑CCC‑GGAACTTGCCGAGCGTGAATCGGCGCGCATGAAAGAAAACAACTCGGCA‑A‑CCTGCCGCTCCTGCCATa                                                                                                                                                                                                                    >  1:11345/1‑239 (MQ=255)
                    gTCGGTGCATTTCCAGAACGCCTCCGGCGTGCGAGCTGAATGCCATGACTGTCATATCCCGCCGGATATTCCAGGCATGGTGAAGCGCAAACT‑GGAAGCGAGCAATGATATCTACCAGA‑CCTTTATTGCGCACTCCATTGATACAC‑C‑TGAAAAATTCGAA‑GCCAAACA‑CCC‑GGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAAAAACTCGGCA‑A‑CCGGCCCCACCTGCCATa                                                                                                                                                                                                                    >  2:243519/1‑239 (MQ=255)
                     tCGGTGCATTTCCAGAACGCCTCCGGCGTGCGAGCTGAATGCCATGACTGTCATATCCCGCCGGATATTCCAGGCATGGTGAAGCGCAAACT‑GGAAGCGAGCAATGATATCTACCAGA‑CCTTTATTGCTCACTCCATTGATACAC‑C‑TGAAAAATTCGAA‑GCCAAACG‑CGC‑GGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAACAACTCGGCA‑A‑CCTGCCGCTCCTGCCATaa                                                                                                                                                                                                                   >  1:108621/1‑239 (MQ=255)
                       ggTGCATTTCCAGAACGCCTCCGGCGTGCGAGCTGAATGCCATGACTGTCATATCCCGCCGGATATTCCAGGCATGGTGAAGCGCAAACT‑GGAAGCGAGCAATGATATCAACCAGA‑CCTTTATTGCTCACTCCATTGATACAC‑C‑TGAAAAATTCGAA‑GCCAAAAG‑CGC‑GGAACTTGCCGAGATTCAATGGGCGCGAATGAAAACAAACAACTCGGCA‑A‑CCTGCCGCTCCTGcgtgaact                                                                                                                                                                                                                 >  1:927124/1‑232 (MQ=255)
                                   gAACGCCTCCGCAGTGCGAGCTGAATGACATGACTGTCATATCCCGCCGGATATTCCAGGCATGGCGAAGCGCAAACT‑GAAAACGAGCAATGATATCTACAAGA‑CCTTTATTGCTCACACCATTGATACAC‑C‑TGAACAATTCGAA‑GCCAAACG‑CGC‑GGAACTTGCCGAGCGTGAATGGGCGCGACTGAAAGAAAACAACTCGGCA‑A‑CCTGCCGCTCCTGCCCTACCTAcgaatgcatgg                                                                                                                                                                                                     >  1:1059745/1‑231 (MQ=255)
                                      cGCCTCCGGCGTGCGAGCTGAATGCCATGACTGTCATATCCCGCCGGATATTCCAGGCATGGTGAAGCGCAAACT‑GGAAGCGAGCAATGATATCTACCAGA‑CCTTTATTGCTCACTCCATTGATACAC‑C‑TGAAAAATTCGAA‑GCCAAACG‑CGC‑GGAACTTGCCGAACGTGAATGGGCGCGAATGAAAGAAAACAACTCGACA‑A‑CCTACCGCTCCTGCCCTAACTACAATTCGATGGa                                                                                                                                                                                                    >  1:437351/1‑237 (MQ=255)
                                        ccTCCGGCGTGCGAGCTGAATGCCATGACTGTCATATCCCGCCGGATATTCCAGGCATGGTGAAGCGCAAACT‑GGAAGCGAGCAATGATATCTACCAGA‑CCTTTATGGCTCACTCCATTGATACAC‑C‑TGAAAAATTCGAA‑GCCAAACG‑CTC‑GGAACTTGCCGGGCGTGAATGGGCGCGAATGAAAGAAAACAACTCGGCA‑C‑ACGGCCGCTCCTGCCCTAACATCGATTCGCTGGacaat                                                                                                                                                                                                >  2:794144/1‑235 (MQ=255)
                                           cgggggggcgagtgaaaTGCCTTGACTTTTATATCCCCCCGGATATCCCAGGAATGGGGAAGCCAAAACG‑GGAAGCGAGCAATGATATCTACCAGC‑CCTTTATTGCTCACTCCATTGATACAC‑C‑TGAAAAATTCAAA‑GCCAACCG‑CGC‑GGAACTTGCCGAGCGGGAATGGGCGCGAATGAAAGAAAACAACCCGGCA‑A‑CCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCg                                                                                                                                                                                             <  2:1229666/224‑1 (MQ=255)
                                                  gCGAGCTGAAGGCCATGCCTGTCATATCCCGCCGGATATTCCAGGCATGGTGAAGGGCAAACT‑GGAAGCGAGCAAGGAAATCTACCAGC‑CCTTTATTGCTCACTCAATTGATACAC‑C‑TGAAAAATTCGAA‑GCCAAACG‑CGC‑GGAACTTGCCGGGGGTGAATGGGCGCGAATGAAAGAAAACAACCCGGCA‑A‑CCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAagcag                                                                                                                                                                                       <  1:312449/238‑1 (MQ=255)
                                                              cctggcttttcatcccccccgggATTTCCCGGGAATGGTGAGGCGCAAACG‑GGAAGGGGAAAATTAT‑TCCTCCAGAGCCTTTATTGCCCACCCCATTGATACCC‑C‑TAAAAAATTCAAA‑GCCAAACG‑CGC‑GGAACTTGCCGGGCGTGAATGGGCGCGAATGAAAAAAACCAACCCGGCA‑C‑CCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAagcag                                                                                                                                                                          <  2:869184/218‑1 (MQ=255)
                                                              cactGAGTGTCATCTCCCCGGTGATTTGCCGGGCATGGGAAAGCGCAAACG‑GGGACGGAGAAAGGATATCCACCAGT‑CCTTTATTGCTCACTCCTGTGATCCCC‑C‑TGAAAAATTGGAG‑GCCAAAGG‑CGC‑GGAACTTGCCGAGCGTGAAGGGGCGAAAATGAAAGAAAACAACCCGGCA‑C‑CCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAagcag                                                                                                                                                                          <  2:464099/236‑1 (MQ=255)
                                                                aTGACTGTCATATCCCGCCGGATATTCCAGGCATGGTGAAGCGCAAACT‑GGAAGCGAGCAATGATATCTACCAGA‑CCTTTATTGCTCACTCCATTGATACAC‑C‑TGAAAAATTCGAA‑GCCAAACG‑CGC‑GGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAGACAACTCGGCA‑A‑CCTGCCGCTCCTGCCATAACTACGATGCGATGGa                                                                                                                                                                                                    >  1:428393/1‑211 (MQ=255)
                                                                  gacgtgtaacaccccgcgGATGTTCCGGGCAGGGTGAAGCGAAAACG‑GGAAGGGAGCAATGATATGTACGACA‑CTTTTATGGCTCACCCCATGGACACCC‑G‑TAAAAAATTCGAA‑GAAAACCG‑CGC‑GGAACTGGCCGAGCGTGAATGGGCGAGAAAAAAAAAAAACAACTCGGAA‑A‑CCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACg                                                                                                                                                                      <  2:697667/223‑1 (MQ=255)
                                                                   attgtaaatccccGCGGGATTTTCCAGGATGGGTAAAGC‑CAAACTGGGAAGCGAGAAAGAAATTCTCCCAAC‑CTTTTATTGCCCCCTCCTTGGATACCC‑C‑TAAAAAATTCGAA‑CCAAACCG‑CGG‑GGAACTTGCCGGGCGTGAATGGGCGCAAAGAAAAGAAAAAAACTCGGAA‑A‑CCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGt                                                                                                                                                                     <  2:1077029/229‑1 (MQ=255)
                                                                       tCATATCCCGCCGGATATTCCAGGCATGGTGAAGCGCAAACT‑GGAAGCGAGCAATGATATCTACCAGA‑CCTTTATTGCTCACTCCATTGATACAC‑C‑TGAAAAATTCGAA‑GCCAAACG‑CGC‑GGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAACAACTCGGCA‑A‑CCCGCCGCCCCTGCCCTAACAACGATCGGAAGAACCATGCGCACCAGCACCCTGAAGAAGCACgccgga                                                                                                                                                                 >  2:1058997/1‑234 (MQ=255)
                                                                         atatCCCGCCGGATATTCCAGGCATGGTGAAGCGCAAACT‑GGAAGCGAGCAATGATATCTACCAGA‑CCTTTATTGCTCACTCCATTGATACAC‑C‑TGAAAAATTCGAA‑GCCAAACG‑CGC‑GGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAACAACTCGGCA‑A‑CCTGCCGCTCCTGCCATAACTAcg                                                                                                                                                                                                              <  1:971777/192‑1 (MQ=255)
                                                                               cgccgGATATTCCAGGCATGGTGAAGCGCAAACT‑GGAAGCGTGCAATGATATCTACCAGA‑CCTTTATTGCTCACTCCATTGATACAC‑C‑TGAAAAATTCGAA‑GCCAAACG‑CGC‑GGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAACAACTCGGCA‑A‑CCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAag                                                                                                                                                                             >  1:213986/1‑219 (MQ=255)
                                                                                 ccgGATATTCCAGGCATGGTGAAGCGCAAACT‑GGAAGCGAGCAATGATATCTACCAGA‑CCTTTATTGCTCACTCCATTGATACAC‑C‑TGAAAAATTCGAA‑GCCAAACG‑CGC‑GGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAACAACTCGGCA‑A‑CCTGCCGCTCCTGCCATAACTACGATGCGATGGACCATCCGAAGCAGCATCCTGAACCAGCACGTCAgtgaaagggggc                                                                                                                                                       >  1:487364/1‑228 (MQ=255)
                                                                                              gCATGGTGAAGCGCAAACT‑GGAAGCGAGCAATGATATCTACCTGA‑CCTTTATTGCTCACTCCATTGATACAC‑C‑TGAAAAATTCGAA‑GCCAAACC‑CGC‑GGAACTTGCCGAGCGTGAATGGGCGCGAATGACACAATCCAACTTGGAA‑A‑CCTCCCGCCCCGGCCCTAACTACGATGGGATGAAACATCCGACGAAGCCCCCCGGAGACACACGACAGATTAAGGTGGCAGCGaaaaagaa                                                                                                                                           >  2:939575/1‑233 (MQ=255)
                                                                                              gCATGGTGAAGCGCAAACT‑GGAAGCGAGCAATGATATCTACCAGA‑CCTTTATTGCTCACTCCATTGATACAC‑C‑TGAAAAATTCGAA‑GCCAAACG‑CGC‑GGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAACAACTCGGCA‑A‑CCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATaat                                                                                                                                          >  1:1060673/1‑239 (MQ=255)
                                                                                                 tGGTGAAGCGCAAACT‑GGAAGCGAGCAATGATATCTACCAGA‑CCTTTATTGCTCACTCCATTGATACAC‑C‑TGAAAAATTCGAA‑GCCAAACG‑CGC‑GGAACTTGCCGAGCGTGAATGGGCGCGCATGAAAGAAAACAACTCGGCA‑A‑CCTGCCGCTCCTGCCCTAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCCCGTCCAATGAAGGGGGCAGCGAAAGAAaatca                                                                                                                                        >  2:265822/1‑238 (MQ=255)
                                                                                                   gTGAAGCGCAAACT‑GGAAGCGAGCAATGATATCTACCAGA‑CCTTTACTGCTCACTCCATTGATACAC‑C‑TGAAAAATTCGAA‑GCCAAACG‑CGC‑GGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAACAACTCGGCA‑A‑CCTGCCGCTCCTGCCATAACTAcgatg                                                                                                                                                                                                           >  1:162160/1‑169 (MQ=255)
                                                                                                            aaaCT‑GGAAGCGAGCAATGATATCTACCAGA‑CCTTTATTGCTCACTCCATTGATACAC‑C‑TGAAAAATTCGAA‑GCCAAACG‑CGC‑GGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAACAACTCGGCA‑A‑CCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCCGATGAAGGGGGCAGCGAAAGGTAATCCATCCTGCATCg                                                                                                                             >  1:650640/1‑238 (MQ=255)
                                                                                                             aaccgggAAGCAGGCAATGATATCTACCAGA‑CCTTTATGGCTAACCCCATTAATACAC‑C‑TAAAAAATTCGAA‑GCCAAAGG‑GGC‑GGAACTAGCCGAGGGTAAATGGGGGCAAATGAAAGAAAACATCTCGGCA‑A‑CCTGCCGCACCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGa                                                                                                                            <  1:791204/234‑1 (MQ=255)
                                                                                                             aaatggaagacggaaaaatctatCCACCTGC‑CTTTTATTGCTCCCACCA‑TGAACCACTC‑TAAAAAATTCGAA‑GCCAAACG‑CGG‑GGACCTGGCCGGGCGTGAATGGGGCAGAATGAAAGAAACCAACGCGGCA‑C‑CCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGa                                                                                                                            <  2:11345/219‑1 (MQ=255)
                                                                                                                    aaGCGAGCAATGATATCTACCAGA‑CCTTTATTGCTCACTCCATTGATACAC‑C‑TGAAAAATTCGAA‑GCCAAACG‑CGC‑GGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAACAACTCGGCA‑A‑CCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGCC‑TGTcct                                                                                                                    >  1:387750/1‑237 (MQ=255)
                                                                                                                        gAGCAAGGATTTCTACCAGC‑CCTTTATTGCCCCGTCCATTGATACCC‑C‑GGAAAAATTCGAA‑GCCAAACG‑CGC‑GGAACTTGTCGAGCGTGAATGGGCGCAAATGAAAGAAAACAACTCGGCA‑C‑CCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGAC‑TGTCATaa                                                                                                                  <  1:152386/237‑1 (MQ=255)
                                                                                                                         aGCAATGATATCTACCAGA‑CCTTTATTGCTCACTCCATTGATTCAC‑C‑TGAAAAATTCGAA‑GCCAAACG‑CGC‑GGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAACAACTCGGCA‑A‑CCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCCCGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGAC‑TGTCCTAAAgg                                                                                                               >  1:119061/1‑239 (MQ=255)
                                                                                                                                   tCTACCAGA‑CCTTTATTGCTCACTCCATTGATACAC‑C‑TGAAAAATTCGAA‑GCCAAACG‑CGC‑GGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAACAACTCGGCA‑A‑CCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTg                                                                                                                                                                                >  1:579506/1‑165 (MQ=255)
                                                                                                                                   tCTACCAGA‑CCTTTATTGCTCACTCCATTGATACAC‑C‑TGAAAAATTCGAA‑GCCAAACG‑CGC‑GGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAACAACTCGGCA‑A‑CCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGCTGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGAC‑TGTCATAAAGGAATTGCcca                                                                                                      >  1:984366/1‑238 (MQ=255)
                                                                                                                                   tCTACCAGA‑CCTTTATTGCTCACTCCATTGATACAC‑C‑TGAAAAATTCGAA‑GCCAAACG‑CGC‑GGAACTTGCCGAGCGGGAATGGGCGCGAATGAAAGAAAACAACTCGGCA‑A‑CCTGCCGCTCCTGCCATAACTCCGATACGATGGATCATGCGAAGCACCATCCTGAAGCAGCACGCCAGAGGAAGGTGGCAGCGAAAGATAATCCATCACGCATCGCC‑TGTCAAAAAGGAATTGCccac                                                                                                     >  2:851057/1‑239 (MQ=255)
                                                                                                                                   ctccccAGC‑CTTTTTTTGCTCACTACTGTGAACCAC‑C‑TGAAAAATGCGAA‑CCAAAACG‑CGG‑GGAACTTCCCGGGGGTGAAGGGGCGCAAAGAAAAGAAAAAAACCCGCCA‑C‑CCTGCCGCCCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGAC‑TGTCATAAAGGTATTGCccac                                                                                                     <  2:487364/235‑1 (MQ=255)
                                                                                                                                        cAGA‑CCTTTATTGCTCACTCCATTGATACAC‑C‑TGAAAAATTCGAA‑GCCAAACG‑CGC‑GGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAACAACTCGGCA‑A‑CCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGAC‑TGTCATAAAGGTATTGCCCACCCGtt                                                                                                >  1:516323/1‑239 (MQ=255)
                                                                                                                                          gA‑CCTTTATTGCTCACTCCATTGATACAC‑C‑TGAAAAATTCGAA‑GCCAAACG‑CGC‑GGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAACAACTCGGCA‑A‑CCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGAC‑TGACATAAAGGAATTGCCCACCAGTAAc                                                                                              >  2:700242/1‑239 (MQ=255)
                                                                                                                                           a‑CCTTTATTGCTCACTCCATTGATACAC‑C‑TGAAAAATTCGAA‑GCCAAACG‑CGC‑GGAACTTGCCGAGCGTGAATGGGCGCGACTGAAAGAAAACAACTCGGCA‑A‑CCTGCCGCTCCTGCCATAACTACGATGCGATGGTTCATGCGACGCAGCATCCTGAAGCAGCCCGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGAC‑TGACATAAAGGAATTTCCCACCAGTTAcc                                                                                             >  1:937122/1‑239 (MQ=255)
                                                                                                                                           a‑CCTTTATTGCTCACTCCATTGATACAC‑C‑TGAAAAATTCGAA‑GCCAAACG‑CGC‑GGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAACAACTCGGCA‑A‑CCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAACGATAATCAATCCTGCATCGCT‑TGTCATAAAGGAATTGCCCACCAGTTAc                                                                                              >  1:648857/1‑238 (MQ=255)
                                                                                                                                           a‑CCTTTATTGCTCACTCCATTGATACAC‑C‑TGAAAAATTCGAA‑GCCAAACG‑CGC‑GGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAACAACTCGGCA‑A‑CCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCa                                                                                                                                >  1:863061/1‑205 (MQ=255)
                                                                                                                                             ctttttttctcccccccATTGATCCCC‑A‑TAAAAAATTC‑AA‑GCCAAACGCCGC‑GGAACTTGCGGGGGGTGAAGGGGGGCAAAGAAAAAAAAACACCCCGCCA‑C‑CCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGAC‑TGTCATAAAGGTATTGCCCACCAGTTAc                                                                                              <  2:769572/222‑1 (MQ=255)
                                                                                                                                             cttttactgtacACTCCTTTGAT‑CAT‑C‑GTAAAAAATAGAACGCAAAGCG‑AGC‑GGAATTTTGCGAGAGGGATGGGGCGAGAAGAAAAAAAATCTACTCGGAA‑A‑CGCTCCCCTCCTGCCATAACTACGATGCGAGTGATCATGCGAAGCAGCATCCTGAAGCAGCACCTCAGAGGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGAC‑TGTCATAAAGGTATTGCCCTCCAGTTAc                                                                                              <  2:933040/226‑1 (MQ=255)
                                                                                                                                             ccTTTTTTGCCCCCCCCATTGACACCC‑C‑GAAAAAATTCAAA‑GCTAAACG‑GGC‑GGAACTTGCAGGCGGAGTAGGGGCCGAAATAAAAGAAACCACCCCGGCA‑A‑CCGCCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGAC‑TGTCATAAAGGTATTGCCCACCAGTTAc                                                                                              <  2:781890/237‑1 (MQ=255)
                                                                                                                                                ttATTGCTCACTCCATTGATACAC‑C‑TGAAAAATTCGAA‑GCCAAACG‑CGC‑GGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAACAACTCGGCA‑A‑CCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAAATATACAATCCTGCATCGCC‑TGTCATAAAGGAATTGCCCACCAGTTACCggtt                                                                                         >  1:1282822/1‑237 (MQ=255)
                                                                                                                                                  aTTGCTCACTCCATTGATACAC‑C‑TGAAAAATTCGAA‑GCCAAACG‑CGC‑GGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAACAACTCGGCA‑A‑CCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGAC‑TGTCATAAAGGTATTGCCCACCAGTTACCGGatat                                                                                       >  1:1002322/1‑239 (MQ=255)
                                                                                                                                                      cTCACTCCATTGATACAC‑C‑TGAAAAATTCGAA‑GCCAAACG‑CGC‑GGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAACAACTCGGCA‑A‑CCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGAC‑TGTCATAAAGGTATTGc                                                                                                         >  1:888800/1‑217 (MQ=255)
                                                                                                                                                        cACTCCATTGATACAC‑C‑TGAAAAATTCGAA‑GCCAAACG‑CGC‑GGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAACAACTCGGCA‑A‑CCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCCGATGAAGGTGGCAGCGAAAGATAATCAATCCGGCACCGCC‑TGTCTAAAAGGAATTGCCCACCAGTTACCGGAATTGGGTAg                                                                                 >  2:1264264/1‑239 (MQ=255)
                                                                                                                                                        cACTCCATTGATACAC‑C‑TGAAAAATTCGAA‑GCCAAACG‑CGC‑GGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAACAACTCGGCA‑A‑CCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGCTAATCAATCCTGCATCGAC‑TGTCATAAAGGCATTGCCCACCAGTTACCGGCTCTGCGTAg                                                                                 >  1:488181/1‑239 (MQ=255)
                                                                                                                                                           tctaTTGATACCC‑C‑TAAAAAATGCCAA‑GCCAAACG‑GCG‑GGAACTTGCCGGGCTGTAATGGGCGCGAATGAAAGAAAACCACCCGGCA‑A‑CCTGCCCCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGAC‑TGTCATAAAGGTATTGCCCACCAGTTACCGGATATGAGTAGCgg                                                                              <  1:1215311/236‑1 (MQ=255)
                                                                                                                                                           tcaaTTGAACCAC‑C‑TAAAAAATTCGAA‑GCCAAACG‑GGC‑GGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAACAACTCGGCA‑A‑CCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGAC‑TGTCATAAAGGTATTGCCCACCAGTTACCGGATATGAGTAGCgg                                                                              <  1:1123351/236‑1 (MQ=255)
                                                                                                                                                           tCCATTGATCCAC‑C‑TGAAAAATTCGAA‑GCCAAACG‑CGC‑GGAACTTCCCGAGCGTGAATGGGCGCGAATGAAAGAAAACAACTCGGCA‑A‑CCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGAC‑TGTCATAAAGGTATTGCCCACCAGTTACCGGATATGAGTAGCgg                                                                              <  1:734217/239‑1 (MQ=255)
                                                                                                                                                           tCCATTGATACAC‑C‑TGAAAAATTCGAA‑GCCAAACG‑CGC‑GGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAACAACTCGGCA‑A‑CCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGAC‑TGTCATAAAGGGATTGCCCACCAGTTACCGGCTATAAg                                                                                    >  1:769572/1‑233 (MQ=255)
                                                                                                                                                           tCCATTGATACAC‑C‑TGAAAAATTCGAA‑GCCAAACG‑CGC‑GGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAACAACTCGGCA‑A‑CCTGCCGCTCCTGCCATAACTACGAAGCGATGGATCATGCGAAGCAGCATCCTAAAGCAGCACGTCAGATTAAGGTGGCAGCGAAAGAAAATCAAGCCGGCATCGAC‑TGTAATAAAGGCATTGCCCACCAGTTACCGGaaataggaaggga                                                                              >  2:962037/1‑230 (MQ=255)
                                                                                                                                                           tCCATTGA‑ACAC‑CGTTAAAAATGCGAA‑GCCAAACG‑CGC‑GGAACTTTCCGGGCGTTAATGGGCGCGAATGAAAGAAAACAACTCGGCA‑A‑CCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGAC‑TGTCATAAAGGTATTGCCCACCAGTTACCGGATATGAGTAGCgg                                                                              <  1:243519/239‑1 (MQ=255)
                                                                                                                                                           cccATTGATCCCC‑C‑TAAAAAATTCGAA‑‑CCAAAAC‑CGCGGGAACTTGCCGGGCGGAAAGGGGCGCAAATAAAAAAAAACAACTGGGAA‑C‑CCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGAC‑TGTCATAAAGGTATTGCCCACCAGTTACCGGATATGAGTAGCgg                                                                              <  2:854736/238‑1 (MQ=255)
                                                                                                                                                           cccATTGAGCCCC‑C‑TGAAAAATGCGAA‑GCCAAACG‑CGC‑GGAACTTGCCGGGCGTGAATGGGCGCGAATGAAAGAAAACAACTCGGCA‑A‑CCGGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGAC‑TGTCATAAAGGTATTGCCCACCAGTTACCGGATATGAGTAGCgg                                                                              <  1:851057/238‑1 (MQ=255)
                                                                                                                                                               ttGATACAC‑C‑TGAAAAATTCGAA‑GCCAAACG‑CGC‑GGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAACAACTCGGCA‑A‑CCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATc                                                                                                                                                                                   >  1:130986/1‑135 (MQ=255)
                                                                                                                                                                tGATACAC‑C‑TGAAAAATTCGAA‑GCCAAACG‑CGC‑GGACCTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAACAACTCGGCA‑A‑CCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCCGCATCCTGAAGCAGACCGTCAGATGAAGGTGGCGGCGAAGGAGAATCAATCCTGCCTAGACTTGACA‑AAAGGAATTGCCACCCAGTAACCGGAAATAAgaaagggctccc                                                                         >  2:1175508/1‑228 (MQ=255)
                                                                                                                                                                tGATACAC‑C‑TGAAAAATTCGAA‑GCCAAACG‑CGC‑GGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAACAACTCGGCA‑A‑CCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGAC‑TGTCATAAAGGAATTGCCCACCAGTTACCggctgtaccttttacccat                                                                          >  1:1097220/1‑221 (MQ=255)
                                                                                                                                                                tGATACAC‑C‑TGAAAAATTCGAA‑GCCAAACG‑CGC‑GGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAACAACTCGGCA‑A‑CCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGGGGCAGCGAAAGATAATCAATCCTGCATCGAC‑TGTCATAAAGGAATTGCCCACCAGTTACCGGAATTGAgagacggtttcc                                                                         >  1:546484/1‑228 (MQ=255)
                                                                                                                                                                     cac‑C‑TGAAAAATTCGAA‑GCCAAACG‑CGC‑GGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAACAACTCGGCA‑A‑CCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGAC‑TGTCATAAAGGTATTGCCCACCAGTTACCGGATATGAGTAGCg                                                                               >  1:545322/1‑228 (MQ=255)
                                                                                                                                                                     cac‑C‑TGAAAAATTCGAA‑GCCAAACG‑CGC‑GGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAACAACTCGGCA‑A‑CCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGAC‑TGTCATAAAGGGATTGCCCCCCAGTTACCGGATATGAGTAGCGGCTTCCGTaa                                                                     >  1:864409/1‑238 (MQ=255)
                                                                                                                                                                     cac‑C‑TGAAAAATTCGAA‑GCCAAACG‑CGC‑GGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAACAACTCGGCA‑A‑CCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGAC‑TGTCATAAAGGAATTGCCCACCAGTAACCGGATATGAGAAGCGGCTTCCGTaac                                                                    >  1:1167557/1‑238 (MQ=255)
                                                                                                                                                                     aatccccaaaaaattacggaacaaaaGG‑CGC‑TGAACTGTGCGAGCGTCAATGGGCGGGAAAGAACGAAATCCTGTCGGCG‑A‑CCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGAATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCAAAAGATAATCAATCCTGCATCGAC‑TGTCATAAAGGTATTGCCCACCAGTTACCGGATATGAGTAGCGGCTTCCGt                                                                       <  2:1324793/216‑1 (MQ=255)
                                                                                                                                                                       c‑c‑TGAAAAATTCGAA‑GCCAAACG‑CGC‑GGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAACAACTCGGCA‑A‑CCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGAC‑TGTCATAAAGGTATTGCccacca                                                                                                   >  1:1052948/1‑206 (MQ=255)
                                                                                                                                                                       c‑c‑TGAAAAATTCGAA‑GCCAAACG‑CGC‑GGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAACAACTCGGCA‑A‑CCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGAC‑TGTCATAAAGGTATTGCCCACCAGTTACCGGAAATGAGTAGCGGCTTcc                                                                         >  1:776998/1‑232 (MQ=255)
                                                                                                                                                                       c‑c‑TGAAAAATTCGAA‑GCCAAACG‑CGC‑GGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAACAACTCGGCA‑A‑CCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGAC‑TGTCATAAAGGAATTGCCCACCAGTTACCGGATATGAGTAGCGGCTTCCGTAAGCa                                                                  >  1:709473/1‑239 (MQ=255)
                                                                                                                                                                                         cacccaacccccgggAACTTCCCGAGCGTGAGTGGGCAGAAATGAAAAAAAACAACTCGGCA‑C‑CCGGCCCGCCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGAC‑TGTCATAAAGGTATTGCCCACCAGTTACCGGATATGAGTAGCGGCTTCCGTAAGCAGTTCGATGAGCTg                                                     <  2:681008/226‑1 (MQ=255)
                                                                                                                                                                                              aCG‑CCC‑GGACCGTGCCGTGGTTGAATGGGCGCAAATAAAAAAAAACAACCGGGCA‑C‑CCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCCGCGAAAGATAATCAATCCTGCATCGAC‑TGTCATAAAGGTATTGCCCACCAGTTACCGGATATGAGTAGCGGCTTCCGTAAGCAGTTCGATGAGCTGCGCGCCa                                              <  1:99767/239‑1 (MQ=255)
                                                                                                                                                                                                ccggcgggAACCTGCCGGGCGGAAAGGGGCGAGAATGAAAGAAAACAACTCGGCA‑A‑CCTGCCCCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGAC‑TGTCATAAAGGTATTGCCCACCAGTTACCGGATATGAGTAGCGGCTTCCGTAAGCAGTTCGATGAGCTGCGCGCCa                                              <  1:683747/233‑1 (MQ=255)
                                                                                                                                                                                                                  gcgcggatgggagaaagaaaaagaaaACATCGCGGCA‑C‑CGTGCCGCTCCTGCCATAACTACGATGCGATGTATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCAGCGAC‑TGTCATAAAGGTATTGCCCACCAGTTACCGGATATGAGTAGCGGCTTCCGTAAGCAGTTCGATGAGCTGCGCGCCAGTGCTAATGACAgtggtg                            <  2:387750/220‑1 (MQ=255)
                                                                                                                                                                                                                    gtaagtgggcgaaataaaaaaaaaaCCTCTGGGCA‑C‑CCTCTCGCCCCTGCCATAACGTGGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGAC‑TGTCATAAAGGTATTGCCCACCAGTTACCGGATATGAGTAGCGGCTTCCGTAAGCAGTTCGATGAGCTGCGCGCCAGTGCTAATGACAGTGGTGac                          <  2:635306/222‑1 (MQ=255)
                                                                                                                                                                                                                     tgaggggggacgaaaaaaaaaaaaCCAC‑CGGCA‑ACCCGGCCACTCCGGCCATAACTACGAGAGCATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCGGCATCGAC‑TGTCATAAAGGTATTGCCCACCAGTGACCGGATATGAGTAGCGGCTTCCGTAAGCAGTTCGATGAGCTGCGCGCCAGTGCTAATGACAGTGGTGac                          <  2:516323/222‑1 (MQ=255)
                                                                                                                                                                                                                     agAATGGGCGCGATTGAAAGAAGCCAACGCGGCA‑C‑CCTGCCGTTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGAC‑TGTCATAAAGGTATTGCCCACCAGTTACCGGATATGAGTAGCGGCTTCCGTAAGCAGTTCGATGAGCTGCGCGCCAGTGCTAATGACAGTGGTGac                          <  1:962037/237‑1 (MQ=255)
                                                                                                                                                                                                                      tgaaggggGCAAAAGAAAAAAAACAACCCGGCACC‑CCGGCCCCCCCTGCCATAACCAAGATGCGATTGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGGGGCAGCGAAAGATAATCAATCCTGCATCGAC‑TGTCATAAAGGTATTGCCCACCAGTTACCGGATATGAGTAGCGGCTTCCGTAAGCAGTTCGATGAGCTGCGCGCCAGTGCTAATGACAGTGGTGac                          <  2:334687/234‑1 (MQ=255)
                                                                                                                                                                                                                      gAATGGGCGCGAAGGAAAGAAAACAACTCGGCT‑A‑CCTGCCGGTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGAC‑TGTCATAAAGGTATTGCCCACCAGTTACCGGATATGAGTAGCGGCTTCCGTAAGCAGTTCGATGAGCTGCGCGCCAGTGCTAATGACAGTGGTGaca                         <  1:939575/238‑1 (MQ=255)
                                                                                                                                                                                                                       aaggggCGGAAAAGAAAAAAACCAACCCGGCA‑A‑CCTCCCCCTCCTGCCATAACTACGATGGGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGAC‑TGTCATAAAGGTATTGCCCACCAGTTACCGGATATGAGTAGCGGCTTCCGTAAGCAGTTCGATGAGCTGCGCGCCAGTGCTAATGACAGTGGTGACACg                       <  2:415176/236‑1 (MQ=255)
                                                                                                                                                                                                                       aaggggCGCAAATAAAAAAAAACAACCCGGAA‑A‑CCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGAC‑TGTCATAAAGGTATTGCCCACCAGTTACCGGATATGAGTAGCGGCTTCCGTAAGCAGTTCGATGAGCTGCGCGCCAGTGCTAATGACAGTGGTGACACg                       <  1:271797/236‑1 (MQ=255)
                                                                                                                                                                                                                        gtGGGCGAGAAGAAAAAAAAACAACCCGGCA‑A‑CCCCCCCCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGAC‑TGTCATAAAGGTATTGCCCACCAGTTACCGGATATGAGTAGCGGCTTCCGTAAGCAGTTCGATGAGCTGCGCGCCAGTGCTAATGACAGTGGTGACACg                       <  2:1060673/237‑1 (MQ=255)
                                                                                                                                                                                                                        aggggCGCGAAATAAAGAAACCTACTCGGCA‑A‑CCTGCCGCCTCTGCCATTACTACGATTCGATTGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGAC‑TGTCATAAAGGTATTTCCCACCAGTTACCGGATATGAGTAGCGGCTTCCGTAAGCAGTTCGATGAGCTGCGCGCCAGTGCTAATGACAGTGGTGACACg                       <  1:1087369/236‑1 (MQ=255)
                                                                                                                                                                                                                          gggCGAGAATAAAAAAAAACAAAGCGGCC‑A‑CCTGCCCTCCCTGCCAAAACTACGATGCGATGGGTCATTCGAAGCAGCATCCTGAAGCAGCACGTCAGATTAAGGTGGCAGCGAAATATAATCAATCCTGCATCGAC‑TGTCATAAAGGTATTGCCCACCAGTTACCGGATATGAGTAGCTGCTTCCGTAAGCAGTTCGATGAGCTGCGCGCCAGTGCTAATGACAGTGGTGACACGCt                     <  2:291563/238‑1 (MQ=255)
                                                                                                                                                                                                                           ggcccaaaTGAAAAAAAACAACCCGGCA‑A‑CCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGAC‑TGTCATAAAGGTATTGCCCACCAGTTACCGGATATGAGTAGCGGCTTCCGTAAGCAGTTCGATGAGCTGCGCGCCAGTGCTAATGACAGTGGTGACACGCt                     <  1:804412/231‑1 (MQ=255)
                                                                                                                                                                                                                             tgcaaaaaaaaaaaaaCCACTCGGCA‑A‑CCAGCCTCTCGTGCCATAACTACGATGCGAGGGATCATGCGAAGCAGCATCCTGAAGCAGCACGGCAGATGAAGGTGGCAGCGAAAGATAAGCAATCCTGCATCGAC‑TGTCATAAAGGTATTGCCCACCAGTTACCGGATATGAGTAGCGGCTGCCGTAAGCAGTTCGATGAGCTGCGCGCCAGTGCTAATGACAGTGGTGACACGCTGTa                  <  2:559244/230‑1 (MQ=255)
                                                                                                                                                                                                                             gcagAATGAAAAAAAACAACACGGAA‑A‑CTTGCCGCCCCTGCCATAACGACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGAC‑TGTCATAAAGGTATTGCCCACCAGTTACCGGATATGAGTAGCGGCTTCCGTAAGCAGTTCGATGAGCTGCGCGCCAGTGCTAATGACAGTGGTGACACGCTGTa                  <  1:1175508/235‑1 (MQ=255)
                                                                                                                                                                                                                                  aTGAAAAAAAACAACTCGGCA‑A‑CCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGAC‑TGTCATAAAGGTATTGCCCACCAGTTACCGGATATGAGTAGCGGCTTCCGTAAGCAGTTCGATGAGCTGCGCGCCAGTGCTAATGACAGTGGTGACACGCTGTACTCTAt            <  1:1264264/239‑1 (MQ=255)
                                                                                                                                                                                                                                            ccaacCCGGCA‑A‑CCGTCCCCCCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGAC‑TGTCATAAAGGTATTGCCCACCAGTTACCGGATATGAGTAGCGGCTTCCGTAAGCAGTTCGATGAGCTGCGCGCCAGTGCTAATGACAGTGGTGACACGCTGTACTCTATTGATATTAAg  <  1:265822/238‑1 (MQ=255)
                                                                                                                                                                                                                                                cTCGGCA‑A‑CCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGAC‑TGTCATAAAGGTATTGCCCACCAGTTACCGGATATGAGTAGCGGCTTCCGTAAGCAGTTCGATGAGCTGCGCGCCa                                              >  1:1013521/1‑191 (MQ=255)
                                                                                                                                                                                                                                                 |                                                                                                                                                                                                                                            
GTGTATGAAGAATATAAACAGTCGGTGCATTTCCAGAACGCCTCCGGCGTGCGAGCTGAATGCCATGACTGTCATATCCCGCCGGATATTCCAGGCATGGTGAAGCGCAAACT‑GGAAGCGAGCAATGATATCTACCAGA‑CCTTTATTGCTCACTCCATTGATACAC‑C‑TGAAAAATTCGAA‑GCCAAACG‑CGC‑GGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAACAACTCGGCA‑A‑CCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCACGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGAC‑TGTCATAAAGGTATTGCCCACCAGTTACCGGATATGAGTAGCGGCTTCCGTAAGCAGTTCGATGAGCTGCGCGCCAGTGCTAATGACAGTGGTGACACGCTGTACTCTATTGATATTAAG  >  NC_000913/1058252‑1058719

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A