Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F17 I0 R1
|
52 |
59.5 |
1410130 |
88.0% |
1240914 |
215.5 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
1,058,486 |
T→C |
19.5% |
S135P (TCG→CCG) |
torC → |
trimethylamine N‑oxide (TMAO) reductase I, cytochrome c‑type subunit |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,058,486 | 0 | T | C | 19.5%
| 99.6
/ 6.8
| 58 | S135P (TCG→CCG) | torC | trimethylamine N‑oxide (TMAO) reductase I, cytochrome c‑type subunit |
| Reads supporting (aligned to +/- strand): ref base T (31/11); new base C (3/9); total (34/24) |
| Fisher's exact test for biased strand distribution p-value = 4.85e-03 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
ATATAAACAGTCGGTGCATTTCCAGAACGCCTCCGGCGTGCGAGCTGAATGCCATGACTGTCATATCCCGCCGGATATTCCAGGCATGGTGAAGCGCAAACTGGAAGCGAGCAATGATATCTACCAGACCTTTATTGCTCACTCCATTGATACA‑CCTGAAAAATTCGAAGCCAAAC‑GCGCGGAACTTGCCGAGCGTGAATGGG‑CGCGAATGAAAGAAAACAACTCGGCAACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCA‑CGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGTCATAAAGGTATTGCCCACCAGTTACCGGATATGAGTAGCGGCTTCCGTAAGCAGTTCGATGAGCTGCGCGCCAGTGCTAATGACAGTGGTGACACGCT > NC_000913/1058263‑1058700
|
atatAAACAGTCGGTGCATTTCCAGAACGCCTCCGGCGTGCGAGCTGAATGCCATGACTGTCATATCCCGCCGGATATTCCAGGCATGGTGAAGCGCAAACTGGAAGCGAGCAATGATATCTACCAGACCTTTATTGCTCACTCCATTGATACA‑CCTGAAAAATTCGAAGCCAAAC‑GCGCTGAACTTGCCGAGCGTGAATGGG‑CGCGAATGAAAAAAAAAAACTCgg > 1:657249/1‑227 (MQ=255)
atatAAACAGTCGGTGCATTTCCAGAACGCCTCCGGCGTGCGAGCTGAATGCCATGACTGTCATATCCCGCCGGATATTCCAGGCATGGTGAAGCGCAAACTGGAAGCGAGCAATGATATCTACCAGACCTTTATTGCTCACTCCATTGATACA‑CCTGAAAAATTCGAAGCCAAAC‑GCCCGGAACTTGCCGACCGTGAATGGG‑CGCGAATGAAAGAAAAAAACTCgg > 2:449064/1‑227 (MQ=255)
gTCGGTGCATTTCCAGAACGCCTCCGGCGTGCGAGCTGAATGCCATGACTGTCATATCCCGCCGGCTATTCCAGGCATGGTGAAGCGCAAACTGGAAGCGAGCAATGATATCTACCAGACCTTTATTGCTCACTCCATTGATACA‑CCTGAAAAATTCGAATCCAAAC‑GCGCGGAACTTGCCGAGCGTGAATGGG‑CGCGAATGAAAGAAAAAAACTCGGAAAACTCCCg > 1:515503/1‑228 (MQ=255)
gTCGGTGCATTTCCAGAACGCCTCCGGCGTGCGAGCTGAATGCCATGACTGTCATATCCCGCCGGATATTCCAGGCATGGTGAAGCGCAAACTGGAATCGAGCGATGATATCTACCAGACCTTTATTGCTCACTCCATTGATACA‑CCTGAAAAATTCGAAGCCAAAC‑GCGCGGAACTTGCCCGGGGGGCACGGG‑CGGGAATGAAAGAAAAAAAATCGCCAACccgccg > 1:641149/1‑228 (MQ=255)
gTCGGTGCATTTCCAGAACGCCTCCGGCGTGCGAGCTGAATGCCATGACTGTCATATCCCGCCGGATATTCCAGGCATGGTGAAGCGCAAACTGGAAGCGAGCAATGATATCTACCAGACCTTTATTGCTCACTCCATTGATACA‑CCTGAAAAATTCGAAGCCAAAC‑GCGCGGAACTTGCCGAGCGGGAATGGC‑GGCGAATGAAAGAAAACAACTCGCCAAccgcccg > 2:133233/1‑223 (MQ=255)
tCGGTGCATTTCCAGAACGCCTCCGGCGTGCGAGCTGAATGCCATGACTGTCATATCCCGCCGGATATTCCAGGCATGGTGAAGCGCAAACTGGAAGCGAGCAATGATATCTACCAGACCTTTATTGCTCACTCCATTGATACA‑CCTGAAAAATTCGAAGCCAAAC‑GCGCGGAACTTGCCGCGCGTGAATGGG‑CGCGAATGAAAAAAAAAAACCCGGAAACCTGCCgg > 1:282129/1‑227 (MQ=255)
cGGTGCATTGCCAGACCGCCGCCGGCGTGCGAGCTGAAGGCCATGACTGTCATCTCCCGCAGGATATCCCAGGCATGGTGAAGCGAAAACTGGAAGCGAGCAATGATATCTACCAGTCCTTTATTGCTCACTCCATTGATACA‑CCTGAAAAATTCGAAGCCAAAC‑GCGCGGAACTTGCCGAGCGTGAATGGG‑CGCAAATGAAAGAAAACAACTCGGCAACCTGCCGCt < 2:190932/228‑1 (MQ=255)
tCCAGAACGCCTCCGGCGTGCGAGCTGAATGCCATGACTGTCATATCCCGCCGGATATTCCAGGCATGGTGAAGCGCAAACTGGAAGCGAGCAATGATATCTACCAGACCTTTATTGCTCACTCCATTGATACA‑CCTGAAAAATTCGAAGCCAAAC‑GCGCGGAACTTGCCGAGCGTGAATGGG‑CGCGAATGAAAGAAAACAACTCGGCAACCTGCCGCTCCTGCCATa > 2:497711/1‑228 (MQ=255)
ccgaccGCCTCCGGCGTGCGAGCTGAATGCCATGCCTGGCATACCCCGCCGGATATTCCAGGCATGGTGAAGCGCAAACTGGAAGCGAGCAATGATATCTACCAGACCTTTATTGCTCACTCCATTGATACC‑CCTGAAAAATTCGAAGCCAAAC‑GCGCGGAACTTGCCGAGCGTGAATGGG‑CGCGAATGAAAGAAAACAACCCGGCAACCTGCCGCTCCTGCCAt < 2:488565/220‑1 (MQ=255)
gAACGCCTCCGGCGTGCGAGCTGAATGCCATGACTGTCATATCCCGCCGGATATTCCAGGCATGGTGAAGCGCAAACTGGAAGCGAGCAATGATATCTACCAGACCTTTATTGCTCACTCCATTGATACA‑CCTGAAAAATTCGAAGCCAAAC‑GCGCGGAACTTGCCGAGCGTGAATGGG‑CGCGAATGAAAGAAAACAACTCGGCAACCTGCCGCTCCTGCCGTAACTa > 2:208547/1‑228 (MQ=255)
cGCCTCCGGCGGGCGAGCTGAATGCCATGACTGTCATATCCCGCCGGATATTCCAGGCATGGTGAAGCGCAAACTGGAAGCGAGCAATGATATCTACCAGACCTTTATTGCTCACTCCATTGATACA‑CCTGAAAAATTCGAAGCCAAAC‑GCGCGGAACTTGCCGAGCGTGAATGGG‑CGCGAATGAAAGAAAACAACTCGGCAACCTGCCGCTCCTGCCATAACTAcg < 2:87488/227‑1 (MQ=255)
cGAGCTGAATGCCATGACTGTCATATCCCGCCGGATATTCCAGGCATGGTGAAGCGCAAACTGGAAGCGAGCAATGATATCTACCAGACCTTTATTGCTCACTCCATTGATACA‑CCTGAAAAATTCGAAGCCAAAC‑GCGCGGAACTTGCCGAGCGTGAATGGC‑CTCGAATGAAAGAAAACAACCCGGCAACCCGCCGGCCCTGCCCTAACTACGAAGCAAAGGAACa > 1:119057/1‑227 (MQ=255)
caggcgtGTCATAACCCGCCGGTTATTCCAGGCATGGGGAAGCAAAACGTGGAAGCGAGCAGTGATATCTGCCAGACCTTTATTGGCCACTCCAGTGATGCA‑CCTGAAAAATTCGAAGCCAAGC‑GCCCGGACCTTGCCGAGCGTGAATGGG‑CGCGAATGAAAGAAAACAACCCGGCAACCTGCCTCTCCTGCCATAACTACGATGCGATGGATCATGCGAAgcagca < 2:515503/221‑1 (MQ=255)
tCATATCCCGCCGGATATTCCAGGCATGGTGAAGCGCAAACTGGAAGCGAGCAATGATATCTACCAGACCTTTATTGCTCACTCCATTGATACA‑CCTGAAAAATTCGAAGCCAAAC‑GCGCGGAACTTGCCGAGCGTGAATGGG‑CGCGAATGAAAGAAAACAACTCGGCAACCTGCCGCTCCTGCCATAACTACGTTGCGATGGATCATGCGAAGCAGCATCCTGAagc > 2:561719/1‑228 (MQ=255)
cgccgGATATTCCAGGCATGGTGAAGCGCAAACTGGAAGCGAGCAATGATATCTACCAGACCTTTATTGCTCACTCCATTGATACA‑CCTGAAAAATTCGAAGCCAAAC‑GCGCGGAACTTGCCGAGCGTGAATGGG‑CGCGAATGAAAGAAAACAACTCGGCAACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGGGAAGCAGCATCCTGAAGCAGCA‑CGTc > 2:558378/1‑228 (MQ=255)
cgccgGATATTCCAGGCATGGTGAAGCGCAAACTGGAAGCGAGCAATGATATCTACCAGACCTTTATTGCTCACTCCATTGATACA‑CCTGAAAAATTCGAAGCCAAAC‑GCGCGGAACTTGCCGAGCGTGAATGGG‑CGCGAATGAAAGAAAACAACTCGGCAACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAACCAGCATCCTGAAGCAGCC‑CGTc > 2:205604/1‑228 (MQ=255)
gCATGGTGAAGCGCAAACTGGAAGCGAGCAATGATATCTACCAGACCTTTATTGCTCACTCCATTGATACA‑CCTGAAAAATTCGAAGCCAAAC‑GCGCGGAACTTGCCGAGCGTGAATGGG‑CGCGAATGAAAGAAAACAACTCGGCAACCTGCCGCTCCTGCCATAACTACGATGCGAAGGACCATTCGAAGCACCATCCTAAAGCAGCA‑CGTCAGATaaaagaggaag > 1:635779/1‑220 (MQ=255)
ggTGAAGCGCAAACTGGAAGCGAGCAATGATATCTACCGGACCTTTATTGCTCACTCCATTGATACA‑CCTGAAAAATTCGAAGCCAAAC‑GCGCGGAACTTGCCGAGCGTGAATGGG‑CGCGAATGAAAGAAAACAACTCGGCAACCTGCCGCTCCTGCCATAACTACGATGCGATGGGTCATGCGAAGCAGCATCCTGAAGCAGAC‑CGTCAGATGAAGGTGGCAGCGa > 2:41716/1‑227 (MQ=255)
gTGAAGCGCAAACTGGAAGCGAGCAATGATATCTACCAGACCTTTATTGCTCACTCCATTGATACA‑CCTGAAAAATTCGAAGCCAAAC‑GCGCGGAACTTGCCGAGCGTGAATGTG‑CGCGAATGCAAGAAAACAACCCGGCAACCGGCCGCTCCTGCCATAACTACGATGCCATGGATCATGCAAAGCAGCACCCT‑TCCCAACACCGCCAGATGAAGGGGGCGGCGaaa > 1:59041/1‑228 (MQ=255)
gTGAAGCGCAAACTGGAAGCGAGCAATGATATCTACCAGACCTTTATTGCTCACTCCATTGATACA‑CCTGAAAAATTCGAAGCCAAAC‑GCGCGGAACTTGCCGAGAGTGAATGGG‑CGCGAATGAAAGAACACAACTCGGCAACCTGCCGCTCCTGCCTTAACTACGATGCGGTGGATCATGGGAACCAGCATCCTGAAGAAGAA‑Cgccggcgcaggggggacgggaa > 1:134358/1‑206 (MQ=255)
gcgcAAACTGGAAGCGAGCAATGATATCTACCAGACCTTTATTGCTCACTCCATTGATACA‑CCTGAAAAATTCGAAGCCAAAC‑GCGCGGAACTTGCCGAGCGTGAATGGG‑CGCGAATGAAAGAAAACAACTCGGCAACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCA‑CGTCAGATGAAGGTGGCAGCGAAAGCTa > 2:413620/1‑227 (MQ=255)
cgcAAACTGGAAGCGAGCAATGATATCTACCAGACCTTTATTGCTCACTCCATTGATACA‑CCTGAAAAATTCGAAGCCAAAC‑GCGCGGAACTTGCCGAGCGTGAATGGG‑CGCGAATGAAAGAAAACAACTCGGCAACCTGCCGCTCCTGCCATAACTACGATGCGATGGAACATGCGAAGCAGCATCCTGAACAACCA‑CCCCAGAGAAAGGTGGCAGCGAAAGATaat > 1:337363/1‑228 (MQ=255)
aCTGGAAGCGAGCAATGATATCTACCAGACCTTTATTGCTCACTCCATTGATACA‑CCTGAAAAATTCGAAGCCAAAC‑GCGCGGAACTTGCCGAGCGTGAATGGG‑CGCGAATGAAAGAAAACAACTCGGCAACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCA‑CGCCAGATGAAGGTGGCAGCGAAAGATaatcaatc > 2:24285/1‑228 (MQ=255)
aCTGGAAGCGAGCAATGATATCTACCAGACCTTTATTGCTCACTCCATTGATACA‑CCTGAAAAATTCGAAGCCAAAC‑GCGCGGAACTTGCCGAGCGTGAATGGG‑CGCGAATGAAAGAAAACAACTCGGCAACCTGCCGCTCCTGCCATAACTACGATGCGATGGACCATGCGAAGCAGCAACCTGAAGCACCA‑CGCCAACGGAAGGGGGACGCGAAAAAAaataaaac > 1:207114/1‑226 (MQ=255)
gacattaaatatcacaaaacttttATTGC‑CACTCCCGTTAAACACCCTAAAAAAACCGAAACAAACA‑GCGGGGAACTACCCG‑GCGGGAAGGGGCCGACAATGAAAGAAACAAACCCGGCAACCTCCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCA‑CGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGAc < 1:131781/207‑1 (MQ=255)
atcAATGATATCTACCAGACCTTTATTGCACACTCCATTGACACA‑CCTGAAAAATTCGAAGCCAACC‑GCGCGGAACTTGCCGAGCGTGAAGGGG‑CGCGAATGAAAGAAACCAACTCGGCAACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCA‑CGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGAc < 2:119057/226‑1 (MQ=255)
aGCAATGATATCTACCAGACCTTTATTGCTCACTCCATTGATACA‑CCTGAAAAATTCGAAGCCAAAC‑GCGCGGAACTTGCCGAGCGTGAATGGG‑CGCGAATGAAAGAAAACAACTCGGCAACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATCCGAAGCAGCATCCTGAAGCAGCA‑CGGCAGATAAAGGTGGCACCGAAGAAAAACCAATCCTgaacagcc > 2:274268/1‑221 (MQ=255)
aaacgcacaaGACCTTTAATGCTCACTCAATTGATACC‑ACGGAAAAATGCAAAGCAAAAC‑GCGGGGAACTGGCCGAGCGTGAAGGGG‑CGCGAATGAAAGAAAACAACACGGCAACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCA‑CGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGTCATa < 2:341194/219‑1 (MQ=255)
cagccttttATTGCTCACTCCATTGATACA‑CCTAAAAAATCCGAACCCAACC‑CGGCCGAACTTGCCGGGCGGGAAGGGG‑CGCGAATGAAAGAAAACAACCCGGCAACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCA‑CGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGTCATAAAGGTa < 2:237149/220‑1 (MQ=255)
gACCTTTATTGCTCACTCCATTGATACA‑CCTGAAAAATTCGAAGCCAAAC‑GCGCGGAACTTGCCGAGCGTGAATGGG‑CGCGAATGAAAGAAAACAACTCGGCAACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCA‑CGTCAGATGAAGGTGGCGGCGAAAGATATTCAAACTTGCACCGACTGTCATACAGGAAtgg > 2:257071/1‑225 (MQ=255)
gACCTTTATTGCTCACTCCATTGATACA‑CCTGAAAAATTCGAAGCCAAAC‑GCGCGGAACTTGCCGAGCGTGAATGGG‑CGCGAATGAAAGAAAACAACTCGGCAACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCA‑CGCCAGCTGAAGGGGGCAGCGAAAGATAATCAATCATGCATGCACTTTCAAAAAGGAAATGc > 1:672853/1‑228 (MQ=255)
aCCTTTATTGCTCACTCCATTGATACA‑CCTGAAAAATTCGAAGCCAAAC‑GCGCGGAACTTGCCGAGCGTGAATGGG‑CGCGAATGAACGAAAACAACTCGGCAACCTGCCGCTCCTGCCCTAACTACGATGCGATGGATCATGCGACGCAGCATCCTGAAACAGCC‑CGTCCGATGAAGGTGTCCGCGCAAGATAATCAATCCCGCCTCGCCCGTCATAAAGGAATTGcc > 1:341194/1‑228 (MQ=255)
aCCTTTATTGCTCACTCCATTGATACA‑CCTGAAAAATTCGAAGCCAAAC‑GCGCGGAACTTGCCGAGCGTGAATGGG‑CGCGAATGAAAGAAAACAACTCGGc > 1:50030/1‑101 (MQ=255)
ccTTTATTGCTCACTCCATTGATACA‑CCTGAAAAATTCGAAGCCAAAC‑GCGCGGAACTTGCCGAGCGTGAATGGG‑CGCGAATGAAAGAAAACAACTCGGCa < 2:50030/101‑1 (MQ=255)
tttATTGCTCAATCCATGAATACC‑CCAAAAAAATTAGAAGCCAAAC‑CCGCGGACTTTGCCGGGCGTGAAGGGG‑AGCAAAGGAAAGAAAACAACTCGGCAACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCA‑CGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGTCATAAAGGTATTGCccac < 2:635779/228‑1 (MQ=255)
aTTGCTCACTCCATTGATACA‑CCTGAAAAATTCGAAGCCAAAC‑GCGCGGAACTTGCCGAGCGTGAATGGG‑CGCGAATGAAAGAAAACAACTCGGCAACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCA‑CGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGTCATAAAGGAATTGCCCACCAg > 2:180386/1‑228 (MQ=255)
cccccTCCATTGATACA‑CCAGAAAAATTCAAAGCCAAAC‑GCGCGGAACTGCCGGGGGGTGATGGGG‑GGAAAAAGAAAGAAAACACCCCGGCACCCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCA‑CGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGTCATAAAGGTATTGCCCACCAGTTAc < 1:497711/224‑1 (MQ=255)
cgcacaccatgaatccccttGAAAAAGTCAAAGCAAACC‑GCGCGGACCTTCCCGAGCGTGAGTGGG‑CGCGAAGAAAAGAAAACAACCCGGCACCCTGCCGCTCCTGCCATAACTGCGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCA‑CGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGTCATAAAGGTATTGCCCACCAGTTAc < 1:180386/209‑1 (MQ=255)
caacacATTGAAACA‑CCGAAAAAATTCGAAGCCAACC‑GCGCGGAACTGGCCGAGCGGGAATGGG‑CGCGAATGAAAGAAAACAACTCGGCAACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCA‑CGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGTCATAAAGGTATTGCCCACCAGTTAc < 2:657249/221‑1 (MQ=255)
gacacacgaaaaaaaTTGAAGCCCAACAGCGCGGAACTGGCCGAGCTTGAAGGGG‑CTAGAAGGAAAGAAAACAACGCGGCAACCGGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCA‑CGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGTCATAAAGGTATTGCCCACCAGTTACCGGATATGAGt < 1:468716/219‑1 (MQ=255)
ca‑cCTGAAAAATTCGAAGCCAAAC‑GCGCGGAACTTGCCGAGCGTGAATGGG‑CGCGAATGAAAGAAAACAACTCGGCAACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCA‑CGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGTCATAAAGGTATTGCCCACCAGTTACCGGATATGAGTAGc > 2:457288/1‑227 (MQ=255)
ca‑cCTGAAAAATTCGAAGCCAAAC‑GCGCGGAACTTGCCGAGCGTGAATGGG‑CGCGAATGAAAGAAAACAACTCGGCAACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCA‑CGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGCCATCAAGGAATTGCCCACCGGTAACCGGatttaagaacc > 2:436147/1‑218 (MQ=255)
ccTGAACAATTCGAAGCCAAAC‑GCGCGGAACTTGCCGAGCGTGAATGGG‑CGCGAATGAAAGAAAACAACTCGGCAACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCA‑CGTCAGATGAAGGTGGCAGCGAAAGTTAATCACTCCTGCATCGCCTGTCGTAAAGGTATGGCCCACCAGTTCCCGGCTAGgaggagacga > 2:306624/1‑224 (MQ=255)
ccTGAAAAATTCGAAGCCAAAC‑GCGCGGAACTTGCCGAGCGTGAATGGG‑CGCGAATGAAAGAAAACAACTCGGCAACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCA‑CGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGTCATAACGGGATTGCCCACCCGTTACCGGCTATGAg > 2:468716/1‑221 (MQ=255)
ccTGAAAAATTCGAAGCCAAAC‑GCGCGGAACTTGCCGAGCGTGAATGGG‑CGCGAATGAAAGAAAACAACTCGGCAACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCA‑CGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGTCATAAAGGAATTGCCCACCAGTTACCGGCTATGAGTAGCGGc > 2:481848/1‑228 (MQ=255)
aaCTTGCCGGCGGTGAATGGG‑CGAGAATGAAAGAAAACAACTCGGCAACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCA‑CGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGTCATAAAGGTATTGCCCACCAGTTACCGGATATGAGTAGCGGCTTCCGTAAGCAGTTCGATGAGCTgcg < 2:534916/226‑1 (MQ=255)
ctGCCGGGCGGAAAGGGG‑CGGAAATGAAAGAAACAAGCTCGCACACCTGCCGCCCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCA‑CGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGTCATAAAGGTATTGCCCACCAGTTACCGGATATGAGTAGCGGCTTCCGTAAGCAGTTCGATGAGCTGCGCGCCa < 2:672853/227‑1 (MQ=255)
gggAATGGG‑CACGAATGAAAAAAAACACATCGGCAACCTGCCGCCACTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCA‑CGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGTCATAAAGGTATTGCCCACCAGTTACCGGATATGAGTAGCGGCTTCCGTAAGCAGTTCGATGAGCTGCGCGCCAGTGCTAAt < 2:282129/225‑1 (MQ=255)
gggaagggggggaataaaaaaaaaaCACCCGGGAAACCCGCCCTCCCTGCCAAAACTACGATGCGATGGATCAAGCGAAGCAGCATCCTGAAGCAGCA‑CGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGTCATAAAGGTATTGCCCACCAGTTACCGGATATGAGTAGCGGCTTCCGTAAGCAGTTCGATGAGCTGCGCGCCAGTGCTAAt < 1:24285/210‑1 (MQ=255)
aaTGGG‑CGCGAATGAAAGAAAACAACTCGGCAACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCA‑CGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGTCATAAAGGTATTGc > 2:176083/1‑157 (MQ=255)
cgcgAATGAAAGAAAACAACTCGGCAACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCA‑CGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGTCATAAAGGTATTGCCCACCAGTTACCGGATATGAGTAGCGGCTTCCGTAAGCAGTTCGATGAGCTGCGCGCCAGTGCTAATGACAgtgg > 2:471753/1‑226 (MQ=255)
cgcgAATGAAAGAAAACAACTCGGCAACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCA‑CGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGGCATAAAGGTATTGCCAACCAGTTACCGGATATGAGTAGCGGCTTCCGTAAGCAGTTCGATGAGTTGCGCGCCAGTGCTAATGACCgtgg > 2:658016/1‑226 (MQ=255)
gtaaaggaaagaaaACAACCCGGCACCCTGCCGCCGCTGCCATAACTCCGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCA‑CGTCAGATGAAGGTGGCAGCTAAAGATAATCAATCCTTCACCGACTGTCATAAAGGTATTGCCCACCAGTTACCGGATATGAGTAGCGGCTTCCGTAAGCAGTTCGATGAGCTGCGCGCCAGTGCTAATGACAgtggtg < 2:641149/221‑1 (MQ=255)
gggAAGGAAAAAAAACGACGGGTCACCCGCCCGCCCCTGCCATAACTACGAGGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCA‑CGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGTCATAAAGGTATTGCCCACCAGTTACCGGATATGAGTAGCGGCTTCCGTAAGCAGTTCGATGAGCTGCGCGCCAGTGCTAATGACAgtggtg < 1:273534/225‑1 (MQ=255)
aaTAAAAGAAAACAACGCGGCACTCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCA‑CGTCAGATGAAGGTGGCAGCGAAAGATAAGCAATCCTGCATCGACTGTCATAAAGGTATTGCCCACCAGTTACCGGATATGAGTAGCGGCTTCCGTAAGCAGTTCGATGAGCTGCGCGCCAGTGCTAATGACAGTGGTGaca < 2:259712/227‑1 (MQ=255)
tGAAAAAAAACAACTCGGCAACCTGCAGCTCCTGACATAACTACGATGCGATGGATCAGGCGAAGCAGCAGCGTGAAGCAGCA‑CGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGTCATAAAGGTATTGCCCACCAGTTACCGGATATGAGTAGCGGCTTCCGTAAGCAGTTCGATGAGCTGCGCGCCAGTGCTAATGACAGTGGTGACACg < 2:337363/227‑1 (MQ=255)
ataaaaaaaaCAACTCGGCACCCTGCCCCCCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCA‑CGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGTCATAAAGGTATTGCCCACCAGTTACCGGATATGAGTAGCGGCTTCCGTAAGCAGTTCGATGAGCTGCGCGCCAGTGCTAATGACAGTGGTGACACg < 2:207114/225‑1 (MQ=255)
ccaagaaaACACCCCGGCCACCGCCCCGCCCTGCCATAACTACGATGCGATGGAACATGCGAAGCAGCATCCTGAAGCAGCC‑CGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGTCATAAAGGTATTGCCCACCAGTTACCGGATATGAGTAGCTGGTTCCGTAAGCAGTTCGATGAGCTGCGCGCCAGTGCTAATGACAGTGGTGACACGCt < 1:608662/226‑1 (MQ=255)
|
ATATAAACAGTCGGTGCATTTCCAGAACGCCTCCGGCGTGCGAGCTGAATGCCATGACTGTCATATCCCGCCGGATATTCCAGGCATGGTGAAGCGCAAACTGGAAGCGAGCAATGATATCTACCAGACCTTTATTGCTCACTCCATTGATACA‑CCTGAAAAATTCGAAGCCAAAC‑GCGCGGAACTTGCCGAGCGTGAATGGG‑CGCGAATGAAAGAAAACAACTCGGCAACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCA‑CGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGTCATAAAGGTATTGCCCACCAGTTACCGGATATGAGTAGCGGCTTCCGTAAGCAGTTCGATGAGCTGCGCGCCAGTGCTAATGACAGTGGTGACACGCT > NC_000913/1058263‑1058700
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
