Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A5 F1 I2 R1	772	77.0	3769570	91.6%	3452926	105.3

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,980,957	(G)_6→7	coding (71/1386 nt)	yifK →	putative APC family amino acid transporter

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,980,951	1	.	G	98.9%	332.1 / ‑3.8	93	coding (65/1386 nt)	yifK	putative APC family amino acid transporter
Reads supporting (aligned to +/- strand): ref base . (1/0); new base G (50/42); total (51/42)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.49e-01

TTGCAACACTCGATGTACCCATAACGATAACCGGTAACACCGGAAAGCATGCAAACACAACACGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCT‑GGGG‑GGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTTGGCCTATATCATCGCCGGGCTGTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAAT  >  NC_000913/3980816‑3981083

ttGCAACACTCGATGTACCCATAACGATAACCGGTAACACCGGAAAGCATGCAAACACAACACGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCT‑ggg                                                                                                                                    <  2:833755/139‑1 (MQ=255)

        cTCGATGTACCCATAACGATAACCGGTAACACCGGAAAGCATGCAAACACAACACGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCT‑gggg‑gggcacc                                                                                                                           >  1:1415948/1‑134 (MQ=255)

           gATGTACCCATAACGATAACCGGTAACACCGGAAAGCATGCAAACACAACACGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGG‑GGCACCAtt                                                                                                                         >  2:620733/1‑139 (MQ=255)

                    aTAACGATAACCGGTAACACCGGAAAGCATGCAAACACAACACGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGG‑GGCACCATTGGCGTCGGc                                                                                                                <  1:1882277/139‑1 (MQ=255)

                    aTAACGATAACCGGTAACACCGGAAAGCATGCAAACACAACACGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGG‑GGCACCATTGGCGTCGGc                                                                                                                <  1:282079/139‑1 (MQ=255)

                     tAACGATAACCGGTAACACCGGAAAGCATGCAAACACAACACGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGG‑GGCACCATTGGCGTCGGcc                                                                                                               >  2:1026879/1‑139 (MQ=255)

                      aaCGATAACCGGTAACACCGGAAAGCATGCAAACACAACACGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGG‑GGCACCATTGGCGTCGGCCt                                                                                                              >  1:1745699/1‑139 (MQ=255)

                       aCGATAACCGGTAACACCGGAAAGCATGCAAACACAACACGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGG‑GGCACCATTGGCGTCGGCCTg                                                                                                             >  2:1773519/1‑139 (MQ=255)

                       aCGATAACCGGTAACACCGGAAAGCATGCAAACACAACACGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGG‑GGCACCATTGGCGTCGGCCTg                                                                                                             >  2:207200/1‑139 (MQ=255)

                           tAACCGGTAACACCGGAAAGCATGCAAACACAACACGATGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGG‑GGCACCATTGGCGTCGGCCTGTTTa                                                                                                         >  1:113170/1‑139 (MQ=255)

                           tAACCGGTAACACCGGAAAGCATGCAAACACAACACGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGG‑GGCACCAt                                                                                                                          >  2:713554/1‑122 (MQ=255)

                           tAACCGGTAACACCGGAAAGCATGCAAACACAACACGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGG‑GGCACCAt                                                                                                                          <  1:713554/122‑1 (MQ=255)

                           tAACCGGTAACACCGGAAAGCATGCAAACACAACACGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGG‑GGCACCATTGGCGTCGGCCTGTTTa                                                                                                         >  2:1044389/1‑139 (MQ=255)

                           tAACCGGTAACACCGGAAAGCATGCAAACACAACACGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGG‑GGCACCATTGGCGTCGGCCTGTTTa                                                                                                         >  2:1875416/1‑139 (MQ=255)

                            aaCCGGTAACACCGGAAAGCATGCAAACACAACACGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGG‑GGCACCATTGGCGTCGGCCTGTTTAt                                                                                                        >  1:813615/1‑139 (MQ=255)

                            aaCCGGTAACACCGGAAAGCATGCAAACACAACACGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGG‑GGCACCATTGGCGTCGGCCTGTTTAt                                                                                                        >  2:762616/1‑139 (MQ=255)

                            aaCCGGTAACACCGGAAAGCATGCAAACACAACACGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGG‑GGCACCATTGGCGTCGGCCTGTTTAt                                                                                                        >  1:769146/1‑139 (MQ=255)

                                  tAACACCGGAAAGCATGCAAACACAACACGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGG‑GGCACCATTGGCGTCGGCCTGTTTATGGGGgc                                                                                                  >  2:1659842/1‑139 (MQ=255)

                                  tAACACCGGAAAGCATGCAAACACAACACGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGG‑GGCACCATTGGCGTCGGCCTGTTTATGGGGgc                                                                                                  >  2:1568825/1‑139 (MQ=255)

                                   aaCACCGGAAAGCATGCAAACACAACACGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGG‑GGCACCATTGGCGTCGGCCTGTTTATGGGGgcc                                                                                                 >  2:1004853/1‑139 (MQ=255)

                                     cacCGGAAAGCATGCAAACACAACACGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGG‑GGCACCATTGGCGTCGGCCTGTTTATGGGGgccgc                                                                                               <  2:465490/139‑1 (MQ=255)

                                     cacCGGAAAGCATGCAAACACAACACGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGG‑GGCACCATTGGCGTCGGCCTGTTTATGGGGgccgc                                                                                               <  2:769146/139‑1 (MQ=255)

                                      acCGGAAAGCATGCAAACACAACACGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGG‑GGCACCATTGGCGTCGGCCTGTTTATGGGGgccgcc                                                                                              >  2:1494390/1‑139 (MQ=255)

                                       ccGGAAAGCATGCAAACACAACACGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGG‑GGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCa                                                                                             <  1:1659842/139‑1 (MQ=255)

                                       ccGGAAAGCATGCAAACACAACACGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGG‑GGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCa                                                                                             <  1:207200/139‑1 (MQ=255)

                                               cATGCAAACACAACACGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGG‑GGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTg                                                                                     >  2:958090/1‑139 (MQ=255)

                                                aTGCAAACACAACACGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGG‑GGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGa                                                                                    >  2:1723260/1‑139 (MQ=255)

                                                 tGCAAACACAACACGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGG‑GGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGaa                                                                                   <  1:1773519/139‑1 (MQ=255)

                                                  gCAAACACAACACGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGG‑GGCACCATTGGCGTc                                                                                                                   <  2:1739795/106‑1 (MQ=255)

                                                  gCAAACACAACACGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGG‑GGCACCATTGGCGTc                                                                                                                   >  1:1739795/1‑106 (MQ=255)

                                                           acacGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGG‑GGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATgggccggg                                                                         <  1:702663/139‑1 (MQ=255)

                                                            cacGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGG‑GGCACCATTGGCGTCGGcc                                                                                                               >  2:1716399/1‑100 (MQ=255)

                                                            cacGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGG‑GGCACCATTGGCGTCGGcc                                                                                                               <  1:1716399/100‑1 (MQ=255)

                                                            cacGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGG‑GGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGaaa                                                                                  <  2:1863541/129‑1 (MQ=255)

                                                            cacGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGG‑GGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGaaa                                                                                  >  1:1863541/1‑129 (MQ=255)

                                                            cacGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGG‑GGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATgggccgggc                                                                        <  1:620733/139‑1 (MQ=255)

                                                               gAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGG‑GGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCAt                                                                     >  2:1490649/1‑139 (MQ=255)

                                                                  gATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGG‑GGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCg                                                                  <  1:1026879/139‑1 (MQ=255)

                                                                  gATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGG‑GGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCg                                                                  <  1:762616/139‑1 (MQ=255)

                                                                      tATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGG‑GGCACCATTGGCGTCgg                                                                                                                 >  2:1884435/1‑88 (MQ=255)

                                                                      tATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGG‑GGCACCATTGGCGTCgg                                                                                                                 <  1:1884435/88‑1 (MQ=255)

                                                                       aTGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGG‑GGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTAttg                                                             <  2:813615/139‑1 (MQ=255)

                                                                         ggCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGG‑GGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTAttgtt                                                           <  2:113170/139‑1 (MQ=255)

                                                                         ggCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGG‑GGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTAttgtt                                                           <  1:1494390/139‑1 (MQ=255)

                                                                           cAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGG‑GGCACCATTGGCGTCGGc                                                                                                                <  2:1267235/84‑1 (MQ=255)

                                                                           cAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGG‑GGCACCATTGGCGTCGGc                                                                                                                >  1:1267235/1‑84 (MQ=255)

                                                                           cAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGG‑GGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTTgg                                                         <  1:1723260/139‑1 (MQ=255)

                                                                            aGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGG‑GGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTTGGc                                                        >  2:1526373/1‑139 (MQ=255)

                                                                            aGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGG‑GGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTTGGc                                                        >  2:17078/1‑139 (MQ=255)

                                                                             gATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGG‑GGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGaaa                                                                                  <  2:1051890/112‑1 (MQ=255)

                                                                             gATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGG‑GGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGaaa                                                                                  >  1:1051890/1‑112 (MQ=255)

                                                                             gATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGG‑GGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTAttg                                                             <  2:1382820/133‑1 (MQ=255)

                                                                             gATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGG‑GGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTAttg                                                             >  1:1382820/1‑133 (MQ=255)

                                                                             gATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGG‑GGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTTGGcc                                                       <  1:1093684/139‑1 (MQ=255)

                                                                             gATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGG‑GGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTTGGcc                                                       >  2:1872826/1‑139 (MQ=255)

                                                                             gATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCT‑gggg‑ggg                                                                                                                               <  2:1701222/66‑2 (MQ=255)

                                                                             gATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCT‑gggg‑ggg                                                                                                                               >  1:1701222/1‑65 (MQ=255)

                                                                              aTAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGAGATATCGAACTCATCGCCCTGGGGG‑GGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATgggccgggcc                                                                       <  2:1002473/122‑1 (MQ=255)

                                                                              aTAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGG‑GGCACCATTGGCGTCGTCCTGTTTATGGGGGCCGCCAGTACCCTGAAATgggccgggcc                                                                       <  2:1230008/122‑1 (MQ=255)

                                                                              aTAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGG‑GGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATgggccgggcc                                                                       >  1:1002473/1‑122 (MQ=255)

                                                                              aTAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGG‑GGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTAttg                                                             >  2:1391733/1‑132 (MQ=255)

                                                                              aTAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGG‑GGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTAttg                                                             <  1:1391733/132‑1 (MQ=255)

                                                                              aTAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGG‑GGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTTGGCCt                                                      >  1:1316500/1‑139 (MQ=255)

                                                                              aTAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCT‑GGGGTGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATgggccgggcc                                                                       >  1:1230008/1‑122 (MQ=255)

                                                                                  cAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGG‑GGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTTGGCCTatat                                                  <  1:1526373/139‑1 (MQ=255)

                                                                                          agCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGG‑GGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTTGGCCTATATCATCGCCg                                          >  2:730184/1‑139 (MQ=255)

                                                                                          agCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGG‑GGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTTGGCCTATATCATCGCCg                                          >  2:977678/1‑139 (MQ=255)

                                                                                            cTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGG‑GGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTTGGCCTATATCATCGCCggg                                        >  2:557996/1‑139 (MQ=255)

                                                                                               cAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGG‑GGCACCAt                                                                                                                          <  2:1706905/54‑1 (MQ=255)

                                                                                               cAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGG‑GGCACCAt                                                                                                                          >  1:1706905/1‑54 (MQ=255)

                                                                                               cAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGG‑GGCACCATTGGCGTCGGCCTGTTTATgggg                                                                                                    <  1:1756802/76‑1 (MQ=255)

                                                                                               cAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGG‑GGCACCATTGGCGTCGGCCTGTTTATgggg                                                                                                    >  2:1756802/1‑76 (MQ=255)

                                                                                                aGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGG‑GGCACCATTGGCGTCGGCCTGTTTATGGGGACCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTTGGCCTATATCATCGCCGGGCTGt                                    <  2:1278662/139‑1 (MQ=255)

                                                                                                 gCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGG‑GGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCAt                                                                     <  1:1019545/105‑1 (MQ=255)

                                                                                                 gCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGG‑GGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCAt                                                                     >  2:1019545/1‑105 (MQ=255)

                                                                                                    tGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGG‑GGCACCATTGGCGTCgg                                                                                                                 <  2:875666/58‑1 (MQ=255)

                                                                                                    tGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGG‑GGCACCATTGGCGTCgg                                                                                                                 >  1:875666/1‑58 (MQ=255)

                                                                                                    tGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGG‑GGCACCATTGGCGTCGGCCTGTGTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTTGGCCTATATCATCGCCGGGCTGTTCGt                                >  2:996006/1‑139 (MQ=255)

                                                                                                    tGGGCTGGAAGCTCGACATATCGAACNCATCGCCCTGGGGG‑GGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTTGGCCTATATCATCGCCGGGCTGTTCGt                                >  1:887137/1‑139 (MQ=255)

                                                                                                      ggCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGG‑GGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTTgg                                                         <  2:1702448/112‑1 (MQ=255)

                                                                                                      ggCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGG‑GGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTTgg                                                         >  1:1702448/1‑112 (MQ=255)

                                                                                                         tGGAAGCTCGACATATCGAACTCATCGCCCTGGGGG‑GGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTTGGCCTATATCATCGCCGGGCTGTTCGTCtttt                           >  2:1287126/1‑139 (MQ=255)

                                                                                                           gAAGCTCGACATATCTAACTCATCGCCCTGGGGG‑GGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTTGGCCTATATCATCGCCGGGCTGTTCGTCTTTTtc                         >  1:1257966/1‑139 (MQ=255)

                                                                                                                         cGAACTCATCGCCCTGGGGG‑GGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTTGGCCTATATCATCGCCGGGCTGTTCGTCTTTTTCATCATGCGTTCAAt           <  2:1415948/139‑1 (MQ=255)

                                                                                                                          gAACTCATCGCCCTGGGGG‑GGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTTGGCCTATATCATCGCCggg                                        <  1:402541/109‑1 (MQ=255)

                                                                                                                          gAACTCATCGCCCTGGGGG‑GGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTTGGCCTATATCATCGCCggg                                        >  2:402541/1‑109 (MQ=255)

                                                                                                                            aCTCATCGCCCTGGGGG‑GGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTTgg                                                         <  2:1141082/90‑1 (MQ=255)

                                                                                                                            aCTCATCGCCCTGGGGG‑GGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTTgg                                                         >  1:1141082/1‑90 (MQ=255)

                                                                                                                              tCATCGCCCTGGGGG‑GGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCa                                                                                             >  1:981310/1‑52 (MQ=255)

                                                                                                                              tCATCGCCCTGGGGG‑GGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCa                                                                                             <  2:981310/52‑1 (MQ=255)

                                                                                                                                aTCGCCCTGGGGG‑GGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCg                                                                  >  1:783389/1‑77 (MQ=255)

                                                                                                                                aTCGCCCTGGGGG‑GGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCg                                                                  <  2:783389/77‑1 (MQ=255)

                                                                                                                                aTCGCCCTGGGGG‑GGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTa                                                                >  1:1354860/1‑79 (MQ=255)

                                                                                                                                aTCGCCCTGGGGG‑GGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTa                                                                <  2:1354860/79‑1 (MQ=255)

                                                                                                                                  cGCCCTGGGGG‑GGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCa                                                                                             <  1:882365/48‑1 (MQ=255)

                                                                                                                                  cGCCCTGGGGG‑GGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCa                                                                                             >  2:882365/1‑48 (MQ=255)

                                                                                                                                  cGCCCTGGGGG‑GGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTTGGCCTATATCATCGCCGGGCTGTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAAt  <  2:887137/139‑1 (MQ=255)

TTGCAACACTCGATGTACCCATAACGATAACCGGTAACACCGGAAAGCATGCAAACACAACACGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCT‑GGGG‑GGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTTGGCCTATATCATCGCCGGGCTGTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAAT  >  NC_000913/3980816‑3981083

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 28 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A