Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A15 F64 I1 R1	4	152.9	5325952	98.7%	5256714	135.6

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	CP009273	4,019,993	Δ1 bp	coding (107/702 nt)	fre →	NAD(P)H‑flavin reductase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP009273	4,019,993	0	A	.	99.0%	966.3 / 0.9	191	coding (107/702 nt)	fre	NAD(P)H‑flavin reductase
Reads supporting (aligned to +/- strand): ref base A (0/0); major base . (104/85); minor base G (2/0); total (106/85)
Fisher's exact test for biased strand distribution p-value = 5.03e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 194 total aligned reads displayed.

CCCTATTTATCGATCCGACAGAGAAAGCGCATGACAACCTTAAGCTGTAAAGTGACCTCGGTAGAAGCTATCACGGATACCGTATATCGTGTCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGTATTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAGGGTTTATCGAGCTGCATATTGGCGCTTCTGAAATCAACCTTTACGCGAAAGCAGTCATGGACCGCA  >  CP009273/4019857‑4020127

cccTATTTATCGATCCGACAGAGAAAGCGCATGACAACCTTAAGCTGTAAAGTGACCTCGGTAGAAGCTATCACGGATACCGTATATCGTGTCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGttttg                                                                                                                                     <  2:1097878/140‑2 (MQ=255)

cccTATTTATCGATCCGACAGAGAAAGCGCATGACAACCTTAAGCTGTAAAGTGACCTCGGTAGAAGCTATCACGGATACCGTATATCGTGTCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGttttg                                                                                                                                     >  2:2527759/1‑139 (MQ=255)

 ccTATTTATCGATCCGACAGAGAAAGCGCATGACAACCTTAAGCTGTAAAGTGACCTCGGTAGAAGCTATCACGGATACCGTATATCGTGTCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGa                                                                                                                                   <  2:235611/140‑1 (MQ=255)

 ccTATTTATCGATCCGACAGAGAAAGCGCATGACAACCTTAAGCTGTAAAGTGACCTCGGTAGAAGCTATCACGGATACCGTATATCGTGTCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGa                                                                                                                                   <  2:1957191/140‑1 (MQ=255)

     tttATCGATCCGACAGAGAAAGCGCATGACAACCTTAAGCTGTAAAGTGACCTCGGTAGAAGCTATCACGGATACCGTATATCGTGTCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGt                                                                                                                               <  2:1855747/140‑1 (MQ=255)

     tttATCGATCCGACAGAGAAAGCGCATGACAACCTTAAGCTGTAAAGTGACCTCGGTAGAAGCTATCACGGATACCGTATATCGTGTCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGt                                                                                                                               >  1:1804921/1‑140 (MQ=255)

     tttATCGATCCGACAGAGAAAGCGCATGACAACCTTAAGCTGTAAAGTGACCTCGGTAGAAGCTATCACGGATACCGTATATCGTGTCCGCATCGTGCCAGACGCGGCCTTGTCTTTTCGTGCTGGTCAGT‑TTTGATGGt                                                                                                                               <  1:1648554/140‑1 (MQ=255)

             tCCGACAGAGAAAGCGCATGACAACCTTAAGCTGTAAAGTGACCTCGGTAGAAGCTATCACGGATACCGTATATCGTGTCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTgatgg                                                                                                                       >  1:1762905/1‑140 (MQ=255)

               cGACAGAGAAAGCGCATGACAACCTTAAGCTGTAAAGTGACCTCGGTAGAAGCTATCACGGATACCGTCTATCGTGTCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCTGTCTGGTCAG‑GTTTGATGGTAGTgatggat                                                                                                                     >  1:2385977/1‑140 (MQ=255)

               cGACAGAGAAAGCGCATGACAACCTTAAGCTGTAAAGTGACCTCGGTAGAAGCTATCACGGATACCGTATATCGTGTCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTgatggat                                                                                                                     >  1:351953/1‑140 (MQ=255)

               cGACAGAGAAAGCGCATGACAACCTTAAGCTGTAAAGTGACCTCGGTAGAAGCTATCACGGATACCGTATATCGTGTCCGCATCGTGCCAGACGCGGCCGTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTgatggat                                                                                                                     >  2:302115/1‑140 (MQ=255)

                  cAGAGAAAGCGCATGACAACCTTAAGCTGTAAAGTGACCTCGGTAGAAGCTATCACGGATACCGTATATCGTGTCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAg                                                                                                                  <  2:2105270/140‑1 (MQ=255)

                       aaaGCGCATGACAACCTTAAGCTGTAAAGTGACCTCGGTAGAAGCTATCACGGATACCGTATATCGTGTCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGa                                                                                                             >  2:452244/1‑140 (MQ=255)

                            gcATGACAACCTTAAGCTGTAAAGTGACCTCGGTAGAAGCTATCACGGATACCGTATATCGTGTCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAAc                                                                                                        <  1:824569/140‑1 (MQ=255)

                              aTGACAACCTTAAGCTGTAAAGTGACCTCGGTAGAAGCTATCACGGATACCGTATATCGTGTCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGt                                                                                                      <  1:1074516/140‑1 (MQ=255)

                              aTGACAACCTTAAGCTGTAAAGTGACCTCGGTAGAAGCTATCACGGATACCGTATATCGTGTCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGt                                                                                                      <  1:447926/140‑1 (MQ=255)

                               tGACAACCTTAAGCTGTAAAGTGACCTCGGTAGAAGCTATCACGGATACCGTATATCGTGTCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGt                                                                                                                               <  2:2383335/114‑1 (MQ=255)

                               tGACAACCTTAAGCTGTAAAGTGACCTCGGTAGAAGCTATCACGGATACCGTATATCGTGTCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGt                                                                                                                               >  1:2383335/1‑114 (MQ=255)

                                     ccTTAAGCTGTAAAGTGACCTCGGTAGAAGCTATCACGGATACCGTATATCGTGTCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTtct                                                                                               >  1:2631109/1‑140 (MQ=255)

                                     ccTTAAGCTGTAAAGTGACCTCGGTAGAAGCTATCACGGATACCGTATATCGTGTCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTtct                                                                                               >  1:2502728/1‑140 (MQ=255)

                                        tAAGCTGTAAAGTGACCTCGGTAGAAGCTATCACGGATACCGTATATCGTGTCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCaa                                                                                            >  2:2318806/1‑140 (MQ=255)

                                          aGCTGTAAAGTGACCTCGGTAGAAGCTATCACGGATACCGTATATCGTGTCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATg                                                                                          >  2:919177/1‑140 (MQ=255)

                                               tAAAGTTACCTCGGTAGAAGCTATCACGGATACCGTATATCGAGTCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGATCGCGACAAACGTACGTTCTCAATGGCTTc                                                                                     >  1:1901504/1‑140 (MQ=255)

                                               tAAAGTGACCTCGGTAGAAGCTATCACGGATACCGTATATCGTGTCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACACACGTCCGTTCTCAATGGCTTc                                                                                     >  1:1948271/1‑140 (MQ=255)

                                               tAAAGTGACCTCGGTAGAAGCTATCACGGATACCGTATATCGTGTCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTc                                                                                     >  2:148257/1‑140 (MQ=255)

                                               tAAAGTGACCTCGGTAGAAGCTATCACGGATACCGTATATCGTGTCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTc                                                                                     >  1:2118928/1‑140 (MQ=255)

                                               tAAAGTGACCTCGGTAGAAGCTATCACGGATACCGTATATCGTGTCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTc                                                                                     >  1:566482/1‑140 (MQ=255)

                                               tAAAGTGACCTCGGTAGAAGCTATCACGGATACCGTATATCGTGTCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTc                                                                                     >  2:607498/1‑140 (MQ=255)

                                                      aCCTCGGTAGAAGCTATCACGGATACCGTATATCGTGTCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCg                                                                              >  2:1635196/1‑140 (MQ=255)

                                                       ccTCGGTAGAAGCTATCACGGATACCGTATATCGTGTCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCgg                                                                             <  1:231590/140‑1 (MQ=255)

                                                         tCGGTAGAAGCTATCACGGATACCGTATATCGTGTCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGAt                                                                           >  1:160782/1‑140 (MQ=255)

                                                         tCGGTAGAAGCTATCACGGATACCGTATATCGTGTCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGAt                                                                           >  2:1670530/1‑140 (MQ=255)

                                                         tCGGTAGAAGCTATCACGGATACCGTATATCGTGTCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGAt                                                                           >  2:82856/1‑140 (MQ=255)

                                                            gTAGAAGCTATCACGGATACCGTATATCGTGTCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGaa                                                                        <  1:378068/140‑1 (MQ=255)

                                                            gTAGAAGCTATCACGGATACCGTATATCGTGTCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGaa                                                                        <  2:1390569/140‑1 (MQ=255)

                                                              aGAAGCTATCACGGATACCGTATATCGTGTCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGaaaa                                                                      <  1:1018108/140‑1 (MQ=255)

                                                              aGAAGCTATCACGGATACCGTATATCGTGTCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGaaaa                                                                      <  2:86984/140‑1 (MQ=255)

                                                                 aGCTATCACGGATACCGTATATCGTGTCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAgg                                                                   <  2:541349/140‑1 (MQ=255)

                                                                 aGCTATCACGGATACCGTATATCGTGTCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAgg                                                                   <  2:2502728/140‑1 (MQ=255)

                                                                 aGCTATCACGGATACCGTATATCGTGTCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAgg                                                                   <  2:2631109/140‑1 (MQ=255)

                                                                     aTCACGGATACCGTATATCGTGTCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAGGGttt                                                               >  1:1133813/1‑140 (MQ=255)

                                                                     aTCACGGATACCGTATATCGTGTCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAGGGttt                                                               >  2:2178258/1‑140 (MQ=255)

                                                                     aTCACGGATACCGTATATCGTGTCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAGGGttt                                                               >  1:454371/1‑140 (MQ=255)

                                                                     aTCACGGATACCGTATATCGTGTCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAGGGttt                                                               >  2:269739/1‑140 (MQ=255)

                                                                       cACGGATACCGTATATCGTGTCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAGGGTTTAt                                                             >  1:1220723/1‑140 (MQ=255)

                                                                           gATACCGTATATCGTGTCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAGGGTTTATCGAg                                                         <  1:1670615/140‑1 (MQ=255)

                                                                            aTACCGTATATCGTGTCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAGGGTTTATCGAGc                                                        >  2:1524731/1‑140 (MQ=255)

                                                                              aCCGTATATCGTGTCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAGGGTTTATCGAGCTg                                                      >  1:1022406/1‑140 (MQ=255)

                                                                              aCCGTATATCGTGTCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAGGGTTTATCGAGCTg                                                      >  2:976625/1‑140 (MQ=255)

                                                                              aCCGTATATCGTGTCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAGGGTTTATCGAGCTg                                                      >  2:1256639/1‑140 (MQ=255)

                                                                                cGTATATCGTGTCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAGGGTTTATCGAGCTGCa                                                    >  1:495600/1‑140 (MQ=255)

                                                                                    tatCGTGTCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAGGGTTTATCGAGCTGCATAtt                                                >  1:1738959/1‑140 (MQ=255)

                                                                                       cGTGTCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAGGGTTTATCGAGCTGCATATTGgc                                             >  1:2481107/1‑140 (MQ=255)

                                                                                         tgtCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACTTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAGGGTTTATCGAGCTGCATATTGgcgc                                           >  1:637071/1‑140 (MQ=255)

                                                                                         tgtCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAGGGTTTATCGAGCTGCATATTGgcgc                                           >  2:1131854/1‑140 (MQ=255)

                                                                                         tgtCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAGGGTTTATCGAGCTGCAGATTGgcgc                                           >  1:2515484/1‑140 (MQ=255)

                                                                                          gtCCGCATCGTGCCAGACTCGGCCTTTTCTTTTCGTGCTGGTCCGT‑TTTGATGGTAGGGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAGGGTTTATCGAGCTGCATATTGGCGCt                                          >  2:287516/1‑140 (MQ=255)

                                                                                          gtCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATTAGCGCGACAAACGTCCGTTCTCAAAGGCTTCGACGCCGGATGAAAAAGGGTTTATCGAGCTGCATATTGGCGCt                                          >  1:920497/1‑140 (MQ=255)

                                                                                          gtCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAGGGTTTATCGAGCTg                                                      <  1:1045228/128‑1 (MQ=255)

                                                                                          gtCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAGGGTTTATCGAGCTg                                                      >  1:1061219/1‑128 (MQ=255)

                                                                                          gtCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAGGGTTTATCGAGCTg                                                      <  2:1061219/128‑1 (MQ=255)

                                                                                          gtCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAGGGTTTATCGAGCTGCATATTGgcg                                            >  2:2042572/1‑138 (MQ=255)

                                                                                          gtCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAGGGTTTATCGAGCTGCATATTGgcg                                            <  1:2042572/138‑1 (MQ=255)

                                                                                          gtCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAGGGTTTATCGAGCTGCATATTGGCGCt                                          >  2:2216543/1‑140 (MQ=255)

                                                                                          gtCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAGGGTTTATCGAGCTGCATATTGGCGCt                                          >  2:641908/1‑140 (MQ=255)

                                                                                          gtCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAGGGTTTATCGAGCTGCATATTGGCGCt                                          >  2:2617548/1‑140 (MQ=255)

                                                                                            ccGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAGGGTTTATCGAGCTGCATATTGGCGCTTc                                        <  1:1353707/140‑1 (MQ=255)

                                                                                                 tCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAGGGTTTATCGAGCTGCCTATTGGCGCTTGTGaaa                                   >  2:1502107/1‑140 (MQ=255)

                                                                                                    tGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCCGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAGGGTTTATCGAGCTGCATATTGGCGCTTCTGAAATCa                                >  2:1313813/1‑140 (MQ=255)

                                                                                                          aCGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAGGGTTTATCGAGCTGCATATTGGCGCTTCTGAAATCAACCttt                          >  2:1024195/1‑140 (MQ=255)

                                                                                                             cgGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAGGGTTTATCGAGCTGCATATTGGCGCTTCTGAAATCAACCTTTAcg                       >  1:335630/1‑140 (MQ=255)

                                                                                                              ggacttttcttttCGTGCTCGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATTGCTTCGACGCCGTATGAAAAACGGTGTATCGAGCTGCAACTTGGAGCTTCAGAAATCAACCTTTActc                      >  2:1609059/4‑138 (MQ=255)

                                                                                                              ggCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACACACGTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAGGGTTTATCGAGCTGCATCTTGGCGCTTCTGAAATCAACATTTAcgc                      >  2:377386/1‑140 (MQ=255)

                                                                                                              agCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAGGGTTTATCGAGCTGCATATTGGCGCTTCTGAAATCAACCTTTAcgc                      >  2:2449833/2‑140 (MQ=255)

                                                                                                               gCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACa                                                                                                           >  1:1831879/1‑54 (MQ=255)

                                                                                                               gCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAGGGTTTATCGAGCTGCATATTGGCGCTTCTGAAATCAACCTTTAcgcg                     >  1:2165833/1‑140 (MQ=255)

                                                                                                               gCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGGAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAGGGTTTATCGAGCTGCATATTGGCGCTTCTGAAATCAACCTTTAcgcg                     >  1:93267/1‑140 (MQ=255)

                                                                                                                 cttttcttttCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAGGGTTTATCGAGCTGCATATTGGCGCTTCTGAAATCAACCTTTACGCGaa                   <  1:2216543/140‑1 (MQ=255)

                                                                                                                   tttcttttcGTGCTTGTCAGT‑TTTGATTGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAGGTTTTATCGAGCTGCATATTGGCGCTTATGAAATCAACCTTTACGCGAAAg                 <  2:490603/140‑1 (MQ=255)

                                                                                                                   tttcttttcGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATTAAAAAGGGTTTATCGAGCTGCATATTGGCGCTTCTGAAATCAACCTTTACGCGAAAg                 <  1:2530801/140‑1 (MQ=255)

                                                                                                                   tttcttttcGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAGGGTTTATCGAGCTGCATATTGGCGCTTCTGAAATCAACCTTTACGCGAAAg                 <  1:267814/140‑1 (MQ=255)

                                                                                                                   tttcttttcGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAGGGTTTATCGAGCTGCATATTGGCGCTTCTGAAATCAACCTTTACGCGAAAg                 <  2:1821222/140‑1 (MQ=255)

                                                                                                                   tttcttttcGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAGGGTTTATCGAGCTGCATATTGGCGCTTCTGAAATCAACCTTTACGCGAAAg                 <  2:1762905/140‑1 (MQ=255)

                                                                                                                   tttcttttcGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAGGGTTTATCGAGCTGCATATTGGCGCTTCTGAAATCAACCTTTACGCGAAAg                 <  2:154975/140‑1 (MQ=255)

                                                                                                                   tttcttttcGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAGGGTTTATCGAGCTGCATATTGGCGCTTCTGAAATCAACCTTTACGCGAAAg                 <  1:689125/140‑1 (MQ=255)

                                                                                                                   tttcttttcGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAGGGTTTATCGAGCTGCATATTGGCGCTTCTGAAATCAACCTTTACGCGAAAg                 <  1:82856/140‑1 (MQ=255)

                                                                                                                   tttcttttcGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAGGGTTTATCGAGCTGCATATTGGCGCTTCTGAAATCAACCTTTACGCGAAAg                 <  2:335630/140‑1 (MQ=255)

                                                                                                                   tttcttttcGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAGGGTTTATCGAGCTGCATATTGGCGCTTCTGAAATCAACCTTTACGCGAAAg                 <  1:1393949/140‑1 (MQ=255)

                                                                                                                   tttcttttcGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAGGGTTTATCGAGCTGCATATTGGCGCTTCTGAAATCAACCTTTACGCGAAAg                 <  1:2617548/140‑1 (MQ=255)

                                                                                                                   tttcttttcGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAGAGTTTATCGAGCTGCATATTGGCGCTTCTGAAATCAACCTTTACGCGAAAg                 <  2:1175107/140‑1 (MQ=255)

                                                                                                                   tttcttttcGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAAGGGCTTCGACGCCGGATGAAAAAGGGTTTATCGAGCTGCATATTGGCGCTTCTGAAATCAACCTTTACGCGAAAg                 <  2:1002855/140‑1 (MQ=255)

                                                                                                                     tcttttcGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAGGGTTTATCGAGCTGCATATTGGCGCTTCTGAAATCAACCTTTACGCGAAAGCa               <  1:1525012/140‑1 (MQ=255)

                                                                                                                         ttcGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAGGGTTTATCGAGCTGCATATTGGCGCTTCTGAAATCAACCTTTACGCGAAAGCAGTCa           <  1:27547/140‑1 (MQ=255)

                                                                                                                          tcGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAGGGTTTATCGAGCTGCATATTGGCGCTTCTGAAATCAACCTTTACGCGAAAGCAGTCAt          <  2:137943/140‑1 (MQ=255)

                                                                                                                          tcGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAGGGTTTATCGAGCTGCATATTGGCGCTTCTGAAATCAACCTTTACGCGAAAGCAGTCAt          >  1:1465682/1‑140 (MQ=255)

                                                                                                                          tcGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAGGGTTTATCGAGCTGCATATTGGCGCTTCTGAAATCAACCTTTACGCGAAAGCAGTCAt          >  1:74927/1‑140 (MQ=255)

                                                                                                                                 ggTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAGGGTTTATCGAGCTGCATATTGGCGCTTCTGAAATCAACCTTTACGCGAAAGCAGTCATGGACCGc   <  2:74927/140‑1 (MQ=255)

                                                                                                                                  gTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAGGGTTTATCGAGCTGCATATTGGCGCTTCTGAAATCAACCTTTACGCGAAAGCAGTCATGGACCGCa  <  1:976625/140‑1 (MQ=255)

                                                                                                                                  gTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAGGGTTTATCGAGCTGCATATTGGCGCTTCTGAAATCAACCTTTACGCGAAAGCAGTCATGGACCGCa  <  1:1256639/140‑1 (MQ=255)

                                                                                                                                  gTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAGGGTTTATCGAGCTGCATATTGGCGCTTCTGAAATCAACCTTTACGCGAAAGCAGTCATGGACCGCa  <  1:1518664/140‑1 (MQ=255)

CCCTATTTATCGATCCGACAGAGAAAGCGCATGACAACCTTAAGCTGTAAAGTGACCTCGGTAGAAGCTATCACGGATACCGTATATCGTGTCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGTATTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAGGGTTTATCGAGCTGCATATTGGCGCTTCTGAAATCAACCTTTACGCGAAAGCAGTCATGGACCGCA  >  CP009273/4019857‑4020127

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 11 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A