Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A13 F20 I1 R1	4	116.2	4044178	98.9%	3999692	135.4

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	CP009273	4,019,993	Δ1 bp	coding (107/702 nt)	fre →	NAD(P)H‑flavin reductase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP009273	4,019,993	0	A	.	99.2%	594.2 / ‑2.6	119	coding (107/702 nt)	fre	NAD(P)H‑flavin reductase
Reads supporting (aligned to +/- strand): ref base A (0/0); major base . (61/57); minor base G (1/0); total (62/57)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 120 total aligned reads displayed.

CCTATTTATCGATCCGACAGAGAAAGCGCATGACAACCTTAAGCTGTAAAGTGACCTCGGTAGAAGCTATCACGGATACCGTATATCGTGTCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGTATTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAGGGTTTATCGAGCTGCATATTGGCGCTTCTGAAATCAACCTTTACGCGAAAGCAGTCATGGACCGCA  >  CP009273/4019858‑4020127

ccTATTTATCGATCCGACAGAGAAAGCGCATGACAACCTTAAGCTGTAAAGTGACCTCGGTAGAAGCTATCACGGATACCGTATATCGTGTCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGa                                                                                                                                   <  1:155373/140‑1 (MQ=255)

    tttATCGATCCGACAGAGAAAGCGCATGACAACCTTAAGCTGTAAAGTGACCTCGGTAGAAGCTATCACGGATACCGTATATCGTGTCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGt                                                                                                                               >  1:340320/1‑140 (MQ=255)

    tttATCGATCCGACAGAGAAAGCGCATGACAACCTTAAGCTGTAAAGTGACCTCGGTAGAAGCTATCACGGATACCGTATATCGTGTCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGt                                                                                                                               <  2:705947/140‑1 (MQ=255)

    tttATCGATCCGACAGAGAAAGCGCATGACAACCTTAAGCTGTAAAGTGACCTCGGTAGAAGCTATCACGGATACCGTATATCGTGTCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGt                                                                                                                               <  2:104848/140‑1 (MQ=255)

    tttATCGATCCGACAGAGAAAGCGCATGACAACCTTAAGCTGTAAAGTGACCTCGGTAGAAGCTATCACGGATACCGTATATCGTGTCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGt                                                                                                                               <  2:1072200/140‑1 (MQ=255)

    tttATCGATCCGACAGAGAAAGCGCATGACAACCTTAAGCTGTAAAGTGACCTCGGTAGAAGCTATCACGGATACCGTATATCGTGTCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGt                                                                                                                               <  2:1054047/140‑1 (MQ=255)

              cGACAGAGAAAGCGCATGACAACCTTAAGCTGTAAAGTGACCTCGGTAGAAGCTATCACGGATACCGTATATCGTGTCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTgatggat                                                                                                                     >  1:340296/1‑140 (MQ=255)

              cGACAGAGAAAGCGCATGACAACCTTAAGCTGTAAAGTGACCTCGGTAGAAGCTATCACGGATACCGTATATCGTGTCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTgatggat                                                                                                                     >  1:1670547/1‑140 (MQ=255)

              cGACAGAGAAAGCGCATGACAACCTTAAGCTGTAAAGTGACCTCGGTAGAAGCTATCACGGATACCGTATATCGTGTCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTgatggat                                                                                                                     >  1:1643848/1‑140 (MQ=255)

              cGACAGAGAAAGCGCATGACAACCTTAAGCTGTAAAGTGACCTCGGTAGAAGCTATCACGGATACCGTATATCGTGTCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTgatggat                                                                                                                     >  1:1550731/1‑140 (MQ=255)

              cGACAGAGAAAGCGCATGACAACCTTAAGCTGTAAAGTGACCTCGGTAGAAGCTATCACGGATACCGTATATCGTGTCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTgatggat                                                                                                                     >  2:1417615/1‑140 (MQ=255)

              cGACAGAGAAAGCGCATGACAACCTTAAGCTGTAAAGTGACCTCGGTAGAAGCTATCACGGATACCGTATATCGTGTCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTgatggat                                                                                                                     >  2:46063/1‑140 (MQ=255)

                   gagaAAGCGCATGACAACCTTAAGCTGTAAAGTGACCTCGGTAGAAGCTATCACGGATACCGTATATCGTGTCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAgcg                                                                                                                <  1:969108/140‑1 (MQ=255)

                             aTGACAACCTTAAGCTGTAAATTGACCTCGTTAGAAGCTATCACGGATACCGTATATCGTGTCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGt                                                                                                      <  1:1586156/140‑1 (MQ=255)

                             aTGACAACCTTAAGCTGTAAAGTGACCTCGGTAGAAGCTATCACGGATACCGTATATCGTGTCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGt                                                                                                      <  2:2002773/140‑1 (MQ=255)

                             aTGACAACCTTAAGCTGTAAAGTGACCTCGGTAGAAGCTATCACGGATACCGTATATCGTGTCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGt                                                                                                      <  1:732625/140‑1 (MQ=255)

                             aTGACAACCTTAAGCTGTAAAGTGACCTCGGTAGAAGCTATCACGGATACCGTATATCGTGTCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGt                                                                                                      <  2:719327/140‑1 (MQ=255)

                              tGACAACCTTAAGCTGTAAAGTGACCTCGGTAGAAGCTATCACGGATACCGTATATCGTGTCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTc                                                                                                     >  2:1538259/1‑140 (MQ=255)

                                aCAACCTTAAGCTGTAAAGTGACCTCGGTAGAAGCTATCACGGATACCGTATATCGTGTCCGCATCGTGCCAGACGCGGCCTTTTCATTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCg                                                                                                   <  1:1444001/140‑1 (MQ=255)

                                    ccTTAAGCTGTAAAGTGACCTCGGTAGAAGCTATCACGGATACCGTATATCGTGTCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGa                                                                                                                                   >  1:1158772/1‑104 (MQ=255)

                                    ccTTAAGCTGTAAAGTGACCTCGGTAGAAGCTATCACGGATACCGTATATCGTGTCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTtct                                                                                               >  1:1377222/1‑140 (MQ=255)

                                              tAAAGTGACCTCGGTAGAAGCTATCACGGATACCGTATATCGTGTCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTc                                                                                     >  2:1642849/1‑140 (MQ=255)

                                              tAAAGTGACCTCGGTAGAAGCTATCACGGATACCGTATATCGTGTCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTc                                                                                     >  1:1334092/1‑140 (MQ=255)

                                              tAAAGTGACCTCGGTAGAAGCTATCACGGATACCGTATATCGTGTCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTc                                                                                     >  2:1420853/1‑140 (MQ=255)

                                              tAAAGTGACCTCGGTAGAAGCTATCACGGATACCGTATATCGTGTCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTc                                                                                     >  2:1231082/1‑140 (MQ=255)

                                              tAAAGTGACCTCGGTAGAAGCTATCACGGATACCGTATATCGTGTCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTc                                                                                     >  1:807103/1‑140 (MQ=255)

                                              tAAAGTGACCTCGGTAGAAGCTATCACGGATACCGTATATCGTGTCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTc                                                                                     >  1:427592/1‑140 (MQ=255)

                                              tAAAGTGACCTCGGTAGAAGCTATCACGGATACCGTATATCGTGTCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTc                                                                                     >  1:1495435/1‑140 (MQ=255)

                                              tAAAGTGACCTCGGTAGAAGCTATCACGGATACCGTATATCGTGTCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTc                                                                                     >  2:916180/1‑140 (MQ=255)

                                              tAAAGTGACCTCGGTAGAAGCTATCACGGATACCGTATATCGTGTCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGAGGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTc                                                                                     >  1:849546/1‑140 (MQ=255)

                                              tAAAGTGACCTCGGTAGAAGCTATCACGGATACCGTATATCGTGTCCGCATAGTGCCAGACGCGGCCTTTTCTTTTAGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTc                                                                                     >  1:1921474/1‑140 (MQ=255)

                                              tAAAGTGACCTCGGTAGAAGCTATCACGGATACCGGATATCGTGTCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTc                                                                                     >  1:943509/1‑140 (MQ=255)

                                                  gTGACCTCGGTAGAAGCTATCACGGATACCGTATATCGTGTCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACg                                                                                 <  1:545848/140‑1 (MQ=255)

                                                     aCCTCGGTAGAAGCTATCACGGATACCGTATATCGTGTCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCg                                                                              <  2:1663855/140‑1 (MQ=255)

                                                     aCCTCGGTAGAAGCTATCACGGATACCGTATATCGTGTCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCg                                                                              >  1:750742/1‑140 (MQ=255)

                                                     aCCTCGGTAGAAGCTATCACGGATACCGTATATCGTGTCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑CTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCg                                                                              >  2:1157702/1‑140 (MQ=255)

                                                     aCCTCGGTAGAAGCTATCACGGATACCGTAGATCGTGTCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCCGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCg                                                                              >  2:11772/1‑140 (MQ=255)

                                                      ccTCGGTAGAAGCTATCACGGATACCGTATATCGTGTCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACACACGTCCGTTCTCAATGGCTTCGACGCCgg                                                                             <  1:1790649/140‑1 (MQ=255)

                                                      ccTCGGTAGAAGCTATCACGGATACCGTATATCGTGTCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCgg                                                                             <  1:1449351/140‑1 (MQ=255)

                                                             aGAAGCTATCACGGAGACCGTATATCGTGTCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGaaaa                                                                      <  2:410260/140‑1 (MQ=255)

                                                               aaGCTATCACGGATACCGTATATCGTGTCCGCATCGTGCCAGACGCGGCC‑TTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAgg                                                                   >  2:331700/1‑140 (MQ=255)

                                                                 gCTATCACGGATACCGTATATCGTGTCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAggg                                                                  >  2:1967879/1‑140 (MQ=255)

                                                                      cACGGATACCGTATATCGTGTCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAGGGTTTAt                                                             <  2:750742/140‑1 (MQ=255)

                                                                       aCGGATACCGTATATCGTGTCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAGGGTTTATc                                                            <  1:197357/140‑1 (MQ=255)

                                                                         ggATACCGTATATCGTGTCCGCATCGTGCCAGACGCGGCC‑TTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAGGGTTTATCGAg                                                         <  1:331700/140‑1 (MQ=255)

                                                                          gATACCGTATATCGTGTCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAGGGTTTATCGAg                                                         <  2:427592/140‑1 (MQ=255)

                                                                          gATACCGTATATCGTGTCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAGGGTTTATCGAg                                                         <  1:1293980/140‑1 (MQ=255)

                                                                            tACCGTATATCGTGTCCGCATCGTGCCAGCCGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAGGGTTTATCGAGCt                                                       <  1:779674/140‑1 (MQ=255)

                                                                            tACCGTATATCGTGTCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAGGGTTTATCGAGCt                                                       >  2:1791452/1‑140 (MQ=255)

                                                                            tACCGTATATCGTGTCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAGGGTTTATCGAGCt                                                       <  1:474181/140‑1 (MQ=255)

                                                                                  atatCGTGTCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAGGGTTTATCGAGCTGCatat                                                 <  2:1550731/140‑1 (MQ=255)

                                                                                      cGTGTCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCgg                                                                             <  2:176497/108‑1 (MQ=255)

                                                                                      cGTGTCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCgg                                                                             >  1:176497/1‑108 (MQ=255)

                                                                                       gtgtCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAGGGTTTATCGAGCTGCATATTGgcg                                            <  1:799146/140‑1 (MQ=255)

                                                                                        tgtCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAGGGTTTATCGAGCTGCATATTGgcgc                                           >  2:1764179/1‑140 (MQ=255)

                                                                                        tgtCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAGGGTTTATCGAGCTGCATATTGgcgc                                           >  2:149655/1‑140 (MQ=255)

                                                                                        tgtCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAGGGTTTATCGAGCTGCATATTGgcgc                                           >  1:798493/1‑140 (MQ=255)

                                                                                        tgtCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAGGGTTTATCGAGCTGCATATTGgcgc                                           >  2:1274722/1‑140 (MQ=255)

                                                                                        tgtCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAGGGTTTATCGAGCTGCATATTGgcgc                                           >  1:1645394/1‑140 (MQ=255)

                                                                                        tgtCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAGGGTTTATCGAGCTGCATATTGgcgc                                           >  1:676298/1‑140 (MQ=255)

                                                                                        tgtCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAGGGTTTATCGAGCTGCATATTGgcgc                                           >  1:1937912/1‑140 (MQ=255)

                                                                                         gtCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAGGGTTTATCGAGCTGCATATTGgcg                                            <  1:1175356/138‑1 (MQ=255)

                                                                                         gtCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAGGGTTTATCGAGCTGCATATTGgcg                                            <  1:1178011/138‑1 (MQ=255)

                                                                                         gtCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAGGGTTTATCGAGCTGCATATTGgcg                                            >  2:1178011/1‑138 (MQ=255)

                                                                                         gtCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAGGGTTTATCGAGCTGCATATTGgcg                                            >  2:1175356/1‑138 (MQ=255)

                                                                                         gtCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAGGGTTTATCGAGCTGCATATTGgcg                                            <  1:1445657/138‑1 (MQ=255)

                                                                                         gtCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAGGGTTTATCGAGCTGCATATTGGCGCt                                          >  1:1780686/1‑140 (MQ=255)

                                                                                         gtCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAGGGTTTATCGAGCTGCATATTGGCGCt                                          >  1:272496/1‑140 (MQ=255)

                                                                                         gtCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAGGGTTTATCGAGCTGCATATTGGCGCt                                          >  1:1719355/1‑140 (MQ=255)

                                                                                         gtCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAGGGTTTATCGAGCTGCATATTGGCGCt                                          >  1:1677834/1‑140 (MQ=255)

                                                                                           ccGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAGGGTTTATCGAGCTGCATATTGGCGCTTc                                        <  1:1967879/140‑1 (MQ=255)

                                                                                           ccGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAGGGTTTATCGAGCTGCATATTGGCGCTTc                                        <  1:1108332/140‑1 (MQ=255)

                                                                                               aTCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAGGGTTTATCGAGCTGCATATTGGCGCTTCTGaa                                    >  2:513223/1‑140 (MQ=255)

                                                                                                 cGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAGGGTTTATCGAGCTGCATATTGGCGCTTCTGAAAt                                  <  2:1856615/140‑1 (MQ=255)

                                                                                                             ggCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTCGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAGGGTTTATCGAGCTGCATATTGGCGCTTCTGAAATCAAACTTTAcgc                      >  2:607668/1‑140 (MQ=255)

                                                                                                             ggCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAGGGTTTATCGAGCTGCATATTGGCGCTTCTGAAATCAACCTTTAcgc                      >  1:728588/1‑140 (MQ=255)

                                                                                                             ggCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAGGGTTTATCGAGCTGCATATTGGCGCTTCTGAAATCAACCTTTAcgc                      >  2:607674/1‑140 (MQ=255)

                                                                                                             ggCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAGGGTTTATCGAGCTGCATATTGGCGCTTCTGAAATCAACCTTTAcgc                      >  1:1759831/1‑140 (MQ=255)

                                                                                                             ggCCTTTTCTTTTCGTGCTGGTCAG‑GTTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAGGGTTTATCGAGCTGCATATTGGCGCTTCTGAAATCAACCTTTAcgc                      >  2:237925/1‑140 (MQ=255)

                                                                                                              gCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAGGGTTTATCGAGCTGCATATTGGCGCTTCTGAAATCAACCTTTAcgcg                     >  1:207728/1‑140 (MQ=255)

                                                                                                              gCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAGGGTTTATCGAGCTGCATATTGGCGCTTCTGAAATCAACCTTTAcgcg                     >  1:544244/1‑140 (MQ=255)

                                                                                                                cttttcttttCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAGGGTTTATCGAGCTGCATATTGGCGCTTCTGAAATCAACCTTTACGCGaa                   <  2:544244/140‑1 (MQ=255)

                                                                                                                cttttcttttCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAGGGTTTATCGAGCTGCATATTGGCGCTTCTGAAATCAACCTTTACGCGaa                   <  2:728588/140‑1 (MQ=255)

                                                                                                                  tttcttttcGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAGGGTTTATCGAGCTGCATATTGGCGCTTCTGAAATCAACCTTTACGCGAAAg                 <  2:1737193/140‑1 (MQ=255)

                                                                                                                  tttcttttcGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAGGGTTTATCGAGCTGCATATTGGCGCTTCTGAAATCAACCTTTACGCGAAAg                 <  2:1495435/140‑1 (MQ=255)

                                                                                                                  tttcttttcGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAGGGTTTATCGAGCTGCATATTGGCGCTTCTGAAATCAACCTTTACGCGAAAg                 <  1:46063/140‑1 (MQ=255)

                                                                                                                  tttcttttcGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAGGGTTTATCGAGCTGCATATTGGCGCTTCTGAAATCAACCTTTACGCGAAAg                 <  2:949673/140‑1 (MQ=255)

                                                                                                                      ttttcGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAGGGTTTATCGAGCTGCATATTGGCGCTTCTGAAATCAACCTTTACGCGAAAGCAGt             <  2:798493/140‑1 (MQ=255)

                                                                                                                        ttcGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAGGGTTTATCGAGCTGCATATTGGCGCTTCTGAAATCAACCTTTACGCGAAAGCAGTCa           >  2:1536866/1‑140 (MQ=255)

                                                                                                                         tcGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATG‑AAAAGGGTTTATCGAGCTGCATATTGGCGCTTCTGAAATCAACCTTTACGCGAAAGCAGTCATg         >  2:516601/1‑140 (MQ=255)

                                                                                                                              cTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAGGGTTTATCGAGCTGCATATTGGCGCTTCTGAAATCAACCTTTACGCGAAAGCAGTCATGGAcc     >  2:1382135/1‑140 (MQ=255)

                                                                                                                              cTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAGGGTTTATCGAGCTGCATATTGGCGCTTCTGAAATCAACCTTTACGCGAAAGCAGTCATGGAcc     >  2:808940/1‑140 (MQ=255)

                                                                                                                                ggTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAGGGTTTATCGAGCTGCATATTGGCGCTTCTGAAATCAACCTTTACGCGAAAGCAGTCATGGACCGc   <  2:943509/140‑1 (MQ=255)

                                                                                                                                ggTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAGGGTTTATCGAGCTGCATATTGGCGCTTCTGAAATCAACCTTTACGCGAAAGCAGTCATGGACCGc   <  2:1331596/140‑1 (MQ=255)

                                                                                                                                ggTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAGGGTTTATCGAGCTGCATATTGGCGCTTCTGAAATCAACCTTTACGCGAAAGCAGTCATGGACCGc   <  2:706612/140‑1 (MQ=255)

                                                                                                                                ggTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAGGGTTTATCGAGCTGCATATTGGCGCTTCTGAAATCAACCTTTACGCGAAAGCAGTCATGGACCGc   <  2:1921474/140‑1 (MQ=255)

                                                                                                                                 gTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAGGGTTTATCGAGCTGCATATTGGCGCTTCTGAAATCAACCTTTACGCGAAAGCAGTCATGGACCGCa  <  1:149655/140‑1 (MQ=255)

                                                                                                                                 gTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAGGGTTTATCGAGCTGCATATTGGCGCTTCTGAAATCAACCTTTACGCGAAAGCAGTCATGGACCGCa  <  1:387043/140‑1 (MQ=255)

                                                                                                                                 gTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAGGGTTTATCGAGCTGCATATTGGCGCTTCTGAAATCAACCTTTACGCGAAAGCAGTCATGGACCGCa  <  1:1764179/140‑1 (MQ=255)

                                                                                                                                  gtcagaTTTGATGGTAGTGATGGATTAGCCCGACAAACGTCCGTTCACAATGGCTTCGACGCCGGATGAAAAAGGGTTTATCGAGCTTCATATTGGCGCTTCTGAAATCAACCTTTACGCGAAAGCAGTCATGGACCGCa  <  2:1377222/135‑1 (MQ=255)

CCTATTTATCGATCCGACAGAGAAAGCGCATGACAACCTTAAGCTGTAAAGTGACCTCGGTAGAAGCTATCACGGATACCGTATATCGTGTCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGTATTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAGGGTTTATCGAGCTGCATATTGGCGCTTCTGAAATCAACCTTTACGCGAAAGCAGTCATGGACCGCA  >  CP009273/4019858‑4020127

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 11 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A