Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A10 F21 I1 R1	4	126.5	4415100	98.7%	4357703	135.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	CP009273	4,019,993	Δ1 bp	coding (107/702 nt)	fre →	NAD(P)H‑flavin reductase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP009273	4,019,993	0	A	.	99.2%	673.6 / ‑1.8	134	coding (107/702 nt)	fre	NAD(P)H‑flavin reductase
Reads supporting (aligned to +/- strand): ref base A (1/0); new base . (79/54); total (80/54)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.84e-01

Only 100 of 136 total aligned reads displayed.

CCTATTTATCGATCCGACAGAGAAAGCGCATGACAACCTTAAGCTGTAAAGTGACCTCGGTAGAAGCTATCACGGATACCGTATATCGTGTCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGTATTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAGGGTTTATCGAGCTGCATATTGGCGCTTCTGAAATCAACCTTTACGCGAAAGCAGTCATGGACCGC  >  CP009273/4019858‑4020126

ccTATTTATCGATCCGACAGAGAAAGCGCATGACAACCTTAAGCTGTAAAGTGACCTCGGTAGAAGCTATCACGGATACCGTATATCGTGTCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGa                                                                                                                                  <  2:1597744/140‑1 (MQ=255)

 cTATTTATCGATCCGACAGAGAAAGCGCATGACAACCTTAAGCTGTAAAGTGACCTCGGTAGAAGCTATCACGGATACCGTATATCGTGTACGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGAt                                                                                                                                 <  1:2205073/140‑1 (MQ=255)

    tttATCGATCCGACAGAGAAAGCGCATGACAACCTTAAGCTGTAAAGTGACCTCGTTAGAAGCTAACACGTATACAGTATATCGTGACCTCATCTATCCAGACCAGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGt                                                                                                                              >  2:2205073/1‑140 (MQ=255)

    tttATCGATCCGACAGAGAAAGCGCATGACAACCTTAAGCTGTAAAGTGACCTCGGTAGAAGCTATCACGGATACCGTATATCGTGTCCGCTTCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGAGGGt                                                                                                                              >  1:100556/1‑140 (MQ=255)

    tttATCGATCCGACAGAGAAAGCGCATGACAACCTTAAGCTGTAAAGTGACCTCGGTAGAAGCTATCACGGATACCGTATATCGTGTCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGt                                                                                                                              >  1:733063/1‑140 (MQ=255)

    tttATCGATCCGACAGAGAAAGCGCATGACAACCTTAAGCTGTAAAGTGACCTCGGTAGAAGCTATCACGGATACCGTATATCGTGTCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGt                                                                                                                              >  1:447411/1‑140 (MQ=255)

    tttATCGATCCGACAGAGAAAGCGCATGACAACCTTAAGCTGTAAAGTGACCTCGGTAGAAGCTATCACGGATACCGTATATCGTGTCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGt                                                                                                                              >  1:1401159/1‑140 (MQ=255)

    tttATCGATCCGACAGAGAAAGCGCATGACAACCTTAAGCTGTAAAGTGACCTCGGTAGAAGCTATCACGGATACCGTATATCGTGTCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGt                                                                                                                              >  1:1454349/1‑140 (MQ=255)

              cGACAGAGAAAGCGCATGACAACCTTAAGCTGTACAGTGACCTCGGTAGAAGCTATCACGGATACCGTATATCGTGTCCGCATCGTGCCCGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑GTTGATGGTAGTgatggat                                                                                                                    >  2:510211/1‑140 (MQ=255)

                 cAGAGAAAGCGCATGACAACCTTAAGCTGTAAAGTGACCTCGGTAGAAGCTATGACGGATACCGTATATCGTGTCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAg                                                                                                                 <  2:566345/140‑1 (MQ=255)

                   gagaAAGCGCATGACAACCTTAAGCTGTAAAGTGACCTCGGTAGAAGCTATCACGGATACCGTATATCGTGTCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAgcg                                                                                                               <  2:1670246/140‑1 (MQ=255)

                        aGCGCATGACAACCTTAAGCTGTAAAGTGACCTCGGTAGAAGCTATCACGGATACCGTATATCGTGTCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACa                                                                                                          <  2:808958/140‑1 (MQ=255)

                          cgcATGACAACCTTAAGCTGTAAAGTGACCTCGGTAGAAGCTATCACGGATACCGTATATCGTGTCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACaaa                                                                                                        >  1:1781885/1‑140 (MQ=255)

                          cgcATGACAACCTTAAGCTGTAAAGTGACCTCGGTAGAAGCTATCACGGATACCGTATATCGTGTCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACaaa                                                                                                        >  1:1670132/1‑140 (MQ=255)

                                  aaCCTTAAGCTGTAAAGTGACCTCGGTAGAAGCTATCACGGATACCGTATATCGTGTCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGtt                                                                                                <  2:1214304/140‑1 (MQ=255)

                                        aaGCTGTAAAGTGACCTCGGTAGAAGCTATCACGGATACCGTATATCGTGTCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAAt                                                                                          <  1:695512/140‑1 (MQ=255)

                                        aaGCTGTAAAGTGACCTCGGTAGAAGCTATCACGGATACCGTATATCGTGTCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAAt                                                                                          <  1:32175/140‑1 (MQ=255)

                                              tAAAGTTACCTCGGTAGAAGCTATCACTGATACCGTATATCGTGTCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGTCTTc                                                                                    >  1:2005464/1‑140 (MQ=255)

                                              tAAAGTGACCTCGGTAGAAGCTATCACGGATACCGTCTATCGTGTCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTc                                                                                    >  1:936260/1‑140 (MQ=255)

                                              tAAAGTGACCTCGGTAGAAGCTATCACGGATACCGTATATCGTGTCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTc                                                                                    >  1:1372125/1‑140 (MQ=255)

                                              tAAAGTGACCTCGGTAGAAGCTATCACGGATACCGTATATCGTGTCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTc                                                                                    >  1:908855/1‑140 (MQ=255)

                                              tAAAGTGACCTCGGTAGAAGCTATCACGGATACCGTATATCGTGTCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTc                                                                                    >  1:748063/1‑140 (MQ=255)

                                              tAAAGTGACCTCGGTAGAAGCTATCACGGATACCGTATATCGTGTCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTc                                                                                    >  1:1874030/1‑140 (MQ=255)

                                              tAAAGTGACCTCGGTAGAAGCTATCACGGATACCGTATATCGTGTCCGCATCGGGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTc                                                                                    >  2:253572/1‑140 (MQ=255)

                                                     aCCTCGGTAGAAGCTATCACGGATACCGTATATCGTGTCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCg                                                                             >  2:1968577/1‑140 (MQ=255)

                                                             aGAAGCTATCACGGATACCGTATATCGTGTCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAg                                                                                                                            <  2:1193672/85‑1 (MQ=255)

                                                             aGAAGCTATCACGGATACCGTATATCGTGTCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAg                                                                                                                            >  1:1193672/1‑85 (MQ=255)

                                                             aGAAGCTATCACGGATACCGTATATCGTGTCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGaaaa                                                                     <  2:456744/140‑1 (MQ=255)

                                                             aGAAGCTATCACGGATACCGTATATCGTGTCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGaaaa                                                                     <  2:818645/140‑1 (MQ=255)

                                                             aGAAGCTATCACGGATACCGTATATCGTGTCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGaaaa                                                                     <  1:274561/140‑1 (MQ=255)

                                                             aGAAGCTATCACGGATACCGTATATCGTGTCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGaaaa                                                                     <  2:456590/140‑1 (MQ=255)

                                                                aGCTATCACGGATACCGTATATCGTGTCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAgg                                                                  <  2:161234/140‑1 (MQ=255)

                                                                    aTCACGGATACCGTATATCGTGTCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAGGGttt                                                              >  2:440471/1‑140 (MQ=255)

                                                                      cACGGATACCGTATATCGTGTCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAGGGTTTAt                                                            >  2:1955682/1‑140 (MQ=255)

                                                                      cACGGATACCGTATATCGTGTCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAGGGTTTAt                                                            <  2:326706/140‑1 (MQ=255)

                                                                      cACGGATACCGTATATCGTGTCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAGGGTTTAt                                                            >  2:1475270/1‑140 (MQ=255)

                                                                      cACGGATACCGTATATCGTGTCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAGCGTTTAt                                                            >  1:1145268/1‑140 (MQ=255)

                                                                       aCGGATACCGTATATCGTGTCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAGGGTTTATc                                                           <  2:1372125/140‑1 (MQ=255)

                                                                       aCGGATACCGTATATCGTGTCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAGGGTTTATc                                                           <  2:1424493/140‑1 (MQ=255)

                                                                          gATACCGTATATCGTGTCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAGGGTTTATCGAg                                                        <  1:956301/140‑1 (MQ=255)

                                                                          gATACCGTATATCGTGTCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAGGGTTTATCGAg                                                        <  1:1968577/140‑1 (MQ=255)

                                                                          gATACCGTATATCGTGTCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAGGGTTTATCGAg                                                        <  1:440471/140‑1 (MQ=255)

                                                                          gATACCGTATATCGTGTCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAGGGTTTATCGAg                                                        <  1:729391/140‑1 (MQ=255)

                                                                          gATACCGGATATCGTGTCCGCATCGTGCCAGACGCGGCCTGTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAGGGTTTATCGAg                                                        <  1:1760862/140‑1 (MQ=255)

                                                                             aCCGTATATCGTGTCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGTATTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAGGGTTTATCGAGCt                                                      >  2:2092469/1‑140 (MQ=255)

                                                                             aCCGTATATCGTGTCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAGGGTTTATCGAGCTg                                                     >  1:1118749/1‑140 (MQ=255)

                                                                             aCCGTATATCGTGTCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAGGGTTTATCGAGCTg                                                     >  1:1855639/1‑140 (MQ=255)

                                                                             aCCGTATATCGTGTCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAGGGTTTATCGAGCTg                                                     >  1:1854924/1‑140 (MQ=255)

                                                                               cGTATATCGTGTCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAGGGTTTATCGAGCTGCa                                                   >  1:481962/1‑140 (MQ=255)

                                                                               cGTATATCGCGTCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAGGGTTTATCGAGCTGCa                                                   >  1:482586/1‑140 (MQ=255)

                                                                                 tataTCGTGTCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAGGGTTTATCGAg                                                        >  2:1316341/1‑133 (MQ=255)

                                                                                 tataTCGTGTCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAGGGTTTATCGAg                                                        <  1:1316341/133‑1 (MQ=255)

                                                                                 tataTCGTGTCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAGGGTTTATCGAg                                                        >  2:64156/1‑133 (MQ=255)

                                                                                 tataTCGTGTCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAGGGTTTATCGAGCTGCata                                                 >  1:1832206/1‑140 (MQ=255)

                                                                                 tataTCGTGTCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAGGGTTTATCGAGCTGCata                                                 >  2:1043432/1‑140 (MQ=255)

                                                                                 tataTCGTGTCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAGGGTTTATCGAGCTGCata                                                 >  2:1102641/1‑140 (MQ=255)

                                                                                     tCGTGTCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAGGGTTTATCGAGCTGCATATTgg                                             <  1:48815/140‑1 (MQ=255)

                                                                                        tgtCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAGGGTTTATCGAGCTGCATATTGgcgc                                          >  2:984464/1‑140 (MQ=255)

                                                                                        tgtCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAGGGTTTATCGAGCTGCATATTGgcgc                                          >  1:1972016/1‑140 (MQ=255)

                                                                                        tgtCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAGGGTTTATCGAGCTGCATATTGgcgc                                          >  1:1936700/1‑140 (MQ=255)

                                                                                        tgtCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAGGGTTTATCGAGCTGCATATTGgcgc                                          >  1:665129/1‑140 (MQ=255)

                                                                                        tgtCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAGGGTTTATCGAGCTGCATATTGgcgc                                          >  1:1598156/1‑140 (MQ=255)

                                                                                         gtCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAGGGTTTATCGAg                                                        >  2:1285292/1‑125 (MQ=255)

                                                                                         gtCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAGGGTTTATCGAg                                                        >  2:1881103/1‑125 (MQ=255)

                                                                                         gtCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAGGGTTTATCGAg                                                        >  1:48728/1‑125 (MQ=255)

                                                                                         gtCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAGGGTTTATCGAg                                                        <  1:1881103/125‑1 (MQ=255)

                                                                                         gtCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAGGGTTTATCGAg                                                        <  2:48728/125‑1 (MQ=255)

                                                                                         gtCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAGGGTTTATCGAg                                                        >  1:716311/1‑125 (MQ=255)

                                                                                         gtCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAGGGTTTATCGAg                                                        <  2:716311/125‑1 (MQ=255)

                                                                                         gtCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAGGGTTTATCGAg                                                        <  1:1285292/125‑1 (MQ=255)

                                                                                         gtCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAGGGTTTATCGAGCTGCATATTgg                                             >  1:2169611/1‑136 (MQ=255)

                                                                                         gtCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAGGGTTTATCGAGCTGCATATTgg                                             <  2:2169611/136‑1 (MQ=255)

                                                                                         gtCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAGGGTTTATCGAGCTGCATATTGGCGCt                                         >  1:1457422/1‑140 (MQ=255)

                                                                                         gtCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAGGGTTTATCGAGCTGCATATTGGCGCt                                         >  2:659832/1‑140 (MQ=255)

                                                                                         gtCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAGGGTTTATCGAGCTGCATATTGGCGCt                                         >  1:1067072/1‑140 (MQ=255)

                                                                                         gtCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAGGGTTTATCGAGCTGCATATTGGCGCt                                         >  1:213484/1‑140 (MQ=255)

                                                                                         gtCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAGGGTTTATCGAGCTGCATATTGGCGCt                                         >  1:793221/1‑140 (MQ=255)

                                                                                         gtCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAGGGTTTATCGAGCTGCATATTGGCGCt                                         >  1:607667/1‑140 (MQ=255)

                                                                                         gtCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAGGGTTTATCGAGCTGCATATTGGCGCt                                         >  1:939957/1‑140 (MQ=255)

                                                                                         gtCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAGGGTTTATCGAGCTGCAGATTGGCGCt                                         >  1:7728/1‑140 (MQ=255)

                                                                                         gtCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAGGGTTTATCGAGCTGCAGATTGGCGCt                                         >  2:428579/1‑140 (MQ=255)

                                                                                          tCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAGGGTTTATCGAGCTGCATATTGGCGCtt                                        >  1:435375/1‑140 (MQ=255)

                                                                                          tCCGCATCCTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAGGGTTTATCGAGCTGCATATTGGCGCtt                                        >  2:1845158/1‑140 (MQ=255)

                                                                                           ccGCAGAGTGCCAGACGCGGCCTTTTCTTTTCTTGCTGGTCAGT‑TTTCATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAGGGTTTATCGAGCTGCATATTGGCGCTTc                                       <  2:580712/140‑1 (MQ=255)

                                                                                                 cGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAGGGTTTATCGAGCTGCATATTGGCGCTTCTGAAAt                                 <  2:395394/140‑1 (MQ=255)

                                                                                                 cGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAGGGTTTATCGAGCTGCATATTGGCGCTTCTGAAAt                                 <  2:1457422/140‑1 (MQ=255)

                                                                                                 cGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TGTGATGGTAGTGATGGATGAGCGCGAAAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAGGGTTTATCGAGCTGCATATTGGCGCTTCTGAAAt                                 <  2:924050/140‑1 (MQ=255)

                                                                                                   tGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGttttg                                                                                                                                    <  2:1300559/40‑2 (MQ=255)

                                                                                                   tGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGttttg                                                                                                                                    >  1:1300559/1‑39 (MQ=255)

                                                                                                   tGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAGGGTTTATCGAGCTGCATATTGGCGCTTCTGAAATCa                               >  2:334597/1‑140 (MQ=255)

                                                                                                             ggCCTTTTCTTTTCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAGGGTTTATCGAGCTGCATATTGGCGCTTCTGAAATCAACCTTTAcgc                     >  2:1507455/1‑140 (MQ=255)

                                                                                                                cttttcttttCGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAGGGTTTATCGAGCTGCATATTGGCGCTTCTGAAATCAACCTTTACGCGaa                  <  2:970906/140‑1 (MQ=255)

                                                                                                                  tttgttttcGTGCTGGTCAGT‑TTTGATGGTAGTGATGTATGAGCGCGAGAAACGTCCGTTCTCTTTGGCTTCGACGCCGGATGAAAAAGGGTTTATCGAGCTGCATATTGGCGCTTCTGAACTCAACCTTTACGCGAAAg                <  1:1327848/140‑1 (MQ=255)

                                                                                                                  tttcttttcGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAGGGTTTATCGAGCTGCATATTGGCGCTTCTGAAATCAACCTTTACGCGAAAg                <  2:793221/140‑1 (MQ=255)

                                                                                                                  tttcttttcGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAGGGTTTATCGAGCTGCATATTGGCGCTTCTGAAATCAACCTTTACGCGAAAg                <  1:292298/140‑1 (MQ=255)

                                                                                                                  tttcttttcGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAGGGTTTATCGAGCTGCATATTGGCGCTTCTGAAATCAACCTTTACGCGAAAg                <  2:939957/140‑1 (MQ=255)

                                                                                                                  tttcttttcGTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAGGGTTTATCGAGCTGCATATTGGCGCTTCTGAAATCAACCTTTACGCGAAAg                <  2:221508/140‑1 (MQ=255)

                                                                                                                           gTGCTGGTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAGGGTTTATCGAGCTg                                                     >  2:1488084/1‑94 (MQ=255)

                                                                                                                                ggTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAGGGTTTATCGAGCTGCATATTGGCGCTTCTGAAATCAACCTTTACGCGAAAGCAGTCATGGACCGc  <  1:1102641/140‑1 (MQ=255)

                                                                                                                                ggTCAGT‑TTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAGGGTTTATCGAGCTGCATATTGGCGCTTCTGAAATCAACCTTTACGCGAAAGCAGTCATGGACCGc  <  1:1507455/140‑1 (MQ=255)

CCTATTTATCGATCCGACAGAGAAAGCGCATGACAACCTTAAGCTGTAAAGTGACCTCGGTAGAAGCTATCACGGATACCGTATATCGTGTCCGCATCGTGCCAGACGCGGCCTTTTCTTTTCGTGCTGGTCAGTATTTGATGGTAGTGATGGATGAGCGCGACAAACGTCCGTTCTCAATGGCTTCGACGCCGGATGAAAAAGGGTTTATCGAGCTGCATATTGGCGCTTCTGAAATCAACCTTTACGCGAAAGCAGTCATGGACCGC  >  CP009273/4019858‑4020126

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 11 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A