Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F224 I0 R1 1457 284.0 9290224 95.7% 8890744 150.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP009273 3,044,281 G→A 8.7% intergenic (‑255/+193) gcvT ← / ← ubiI aminomethyltransferase, tetrahydrofolate‑dependent, subunit (T protein) of glycine cleavage complex/2‑octaprenylphenol hydroxylase, FAD‑dependent

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0092733,044,2810GA 8.7% 721.1 / 39.1 218intergenic (‑255/+193)gcvT/ubiIaminomethyltransferase, tetrahydrofolate‑dependent, subunit (T protein) of glycine cleavage complex/2‑octaprenylphenol hydroxylase, FAD‑dependent
Reads supporting (aligned to +/- strand):  ref base G (108/90);  new base A (14/5);  total (122/96)
Fisher's exact test for biased strand distribution p-value = 1.47e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.84e-01

Only 100 of 221 total aligned reads displayed.

TTGCCTGAACTTACCACCGAAACAGACTGTTAACCATAAGGTAAAATTGATCATCACATTAGCTTATGGTTAAAAAATGCAAAAATCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAGTCAATTTGAATAAGACAATATTAAGAGCTAAAAAAATGTCAAAAAACACTAAATCAAAAAATAATGGCATTAGAAAATATAATGCGAAAACGGAGGTGAAATTAGTTTATTTCAAATGAGGAAAATCTCCCGGCGAAAAAACCGGGAGA  >  CP009273/3044133‑3044430
                                                                                                                                                    |                                                                                                                                                     
ttGCCTGAACTTACCACCGAAACAGACTGTTAACCATAAGGTAAAATTGATCATCACATTAGCTTATGGTTAAAAAATGCAAAAATCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAGt                                                                                                                                                      <  1:4495458/150‑1 (MQ=255)
 tGCCTGAACTTACCACCGAAACAGACTGTTAACCATAAGGTAAAATTGATCATCACATTAGCTTATGGTTAAAAAATGCAAAAATCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAGTc                                                                                                                                                     >  1:918939/1‑150 (MQ=255)
  gCCTGAACTTACCACCGAAACAGACTGTTAACCATAAGGTAAAATTGATCATCACATTAGCTTATGGTTAAAAAATGCAAAAATCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAGTCa                                                                                                                                                    <  2:4613115/150‑1 (MQ=255)
    cTGAACTTACCACCGAAACAGACTGTTAACCATAAGGTAAAATTGATCATCACATTAGCTTATGGTTAAAAAATGCAAAAATCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAGTCAAt                                                                                                                                                  <  2:1791613/150‑1 (MQ=255)
      gAACTTACCACCGAAACAGACTGTTAACCATAAGGTAAAATTGATCATCACATTAGCTTATGGTTAAAAAATGCAAAAATCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAATCAAttt                                                                                                                                                <  1:2795482/150‑1 (MQ=255)
       aaCTTACCACCGAAACAGACTGTTAACCATAAGGTAAAATTGATCATCACATTAGCTTATGGTTAAAAAATGCAAAAATCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAGTCAATTTg                                                                                                                                               >  2:832642/1‑150 (MQ=255)
        aCTTACCACCGAAACAGACTGTTAACCATAATGTAAAATTGATCATCACATTAGCTTATGGTTAAAAAATGCAAAAATCGCGACAGAATAAAAAACCAAAAAATACCCCAGTTTCTATACAAAGATGATGTGATGAGAAAGTCAATTTGa                                                                                                                                              <  2:406897/150‑1 (MQ=255)
        aCTTACCACCGAAACAGACTGTTAACCATAAGGTAAAATTGATCATCACATTAGCTTATGGTTAAAAAATGCAAAAATCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAGTCAATTTGa                                                                                                                                              <  1:118371/150‑1 (MQ=255)
          ttACCACCGAAACAGACTGTTAACCATAAGGTAAAATTGATCATCACATTAGCTTATGGTTAAAAAATGCAAAAATCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAGTCAATTTGAAt                                                                                                                                            <  2:3515555/150‑1 (MQ=255)
          ttACCACCGAAACAGACTGTTAACCATAAGGTAAAATTGATCATCACATTAGCTTATGGTTAAAAAATGCAAAAATCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAGTCAATTTGAAt                                                                                                                                            >  1:2279580/1‑150 (MQ=255)
            accaccGAAACAGACTGTTAACCATAAGGTAAAATTGATCATCACATTAGCTTATGGTTAAAAAATGCAAAAATCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAGTCAATTTGAATaa                                                                                                                                          <  1:153585/150‑1 (MQ=255)
                ccGAAACAGACTGTTAACCATAAGGTAAAATTGATCATCACATTAGCTTATGGTTAAAAAATGCAAAAATCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAGTCAATTTGAATAAGACa                                                                                                                                      <  1:2059162/150‑1 (MQ=255)
                ccGAAACAGACTGTTAACCATAAGGTAAAATTGATCATCACATTAGCTTATGGTTAAAAAATGCAAAAATCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAGTCAATTTGAATAAGACa                                                                                                                                      <  1:2059246/150‑1 (MQ=255)
                  gAAACAGACTGTTAACCATAAGGTAAAATTGATCATCACATTAGCTTATGGTTAAAAAATGCAAAAATCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAGTCAATTTGAATAAGACAat                                                                                                                                    >  1:463129/1‑150 (MQ=255)
                  gAAACAGACTGTTAACCATAAGGTAAAATTGATCATCACATTAGCTTATGGTTAAAAAATGCAAAAATCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAATCAATTTGAATAAGACAat                                                                                                                                    >  1:3576750/1‑150 (MQ=255)
                     aCAGACTGTTAACCATAAGGTAAAATTGATCATCACATTAGCTTATGGTTAAAAAATGCAAAAATCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAGTCAATTTGAATAAGACAATAtt                                                                                                                                 <  2:3857493/150‑1 (MQ=255)
                     aCAGACTGTTAACCATAAGGTAAAATTGATCAACACATTAGCTTATGGTTAAAAAATGCAAAAATCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAGTCAATTTGAATAAGACAATAtt                                                                                                                                 <  2:591645/150‑1 (MQ=255)
                      cAGACTGTTAACCATAAGGTAAAATTGATCATCACATTAGCTTATGGTTAAAAAATGCAAAAATCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAGTCAATTTGAATAAGACAATATTa                                                                                                                                >  1:4295141/1‑150 (MQ=255)
                      cAGACTGTTAACCATAAGGTAAAATTGATCATCACATTAGCTTATGGTTAAAAAATGCAAAAATCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAGTCAATTTGAATAAGACAATATTa                                                                                                                                <  1:3021059/150‑1 (MQ=255)
                      cAGACTGTTAACCATAAGGTAAAATTGATCATCACATTAGCTTATGGTTAAAAAATGCAAAAATCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAATCAATTTGAATAAGACAATATTa                                                                                                                                >  1:3356/1‑150 (MQ=255)
                      cAGACTGTTAACCATAAGGTAAAATTGATCATCACATTAGCTTATGGTTAAAAAATGCAAAAATCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAATCAATTTGAATAAGACAATATTa                                                                                                                                >  1:2313477/1‑150 (MQ=255)
                           tGTTAACCATAAGGTAAAATTGATCATCACATTAGCTTATGGTTAAAAAATGCAAAAATCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAGTCAATTTGAATAAGACAATATTAAGAGc                                                                                                                           <  1:3295656/150‑1 (MQ=255)
                            gTTAACCATAAGGTAAAATTGATCATCACATTAGCTTATGGTTAAAAAATGCAAAAATCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAGTCAATTTGAATAAGACAATATTAAGAGCt                                                                                                                          <  2:1156706/150‑1 (MQ=255)
                            gTTAACCATAAGGTAAAATTGATCATCACATAAGCTTATGGTTAAAAAATGCAAAAATCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAGTCAATTTGAATAAGACAATATTAAGAGCt                                                                                                                          >  1:1034757/1‑150 (MQ=255)
                              tAACCATAAGGTAAAATTGATCATCACATTAGCTTATGGTTAAAAAATGCAAAAATCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAGTCAATTTGAATAAGACAATATTAAGAGCTaa                                                                                                                        >  1:4161965/1‑150 (MQ=255)
                               aaCCATAAGGTAAAATTGATCATCACATTAGCTTATGGTTAAAAAATGCAAAAATCGCGACAGAATAAAAAACCAAAAAACACACCAGTTTCTATACAAAGATGATGTGATGAGAAAGTCAATTTGAATAAGACAATATTAAGAGCTaaa                                                                                                                       >  1:563238/1‑150 (MQ=255)
                                  cATAAGGTAAAATTGATCATCACATTAGCTTATGGTTAAAAAATGCAAAAATCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAGTCAATTTGAATAAGACAATATTAAGAGCTaaaaaa                                                                                                                    >  1:189330/1‑150 (MQ=255)
                                  cATAAGGTAAAATTGATCATCACATTAGCTTATGGTTAAAAAATGCAAAAATCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAGTCAATTTGAATAAGACAATATTAAGAGCTaaaaaa                                                                                                                    >  2:2201860/1‑150 (MQ=255)
                                   aTAAGGTAAAATTGATCATCACATTAGCTTATGTTTAAAAAATGCAAAAATCGCGACAGAATAAAAAAACAAAAAATACACCAGTTTCTAAACAAAGATGATGTGATGAGAAAATCAATTTGAATAAGACAATATTAAGAGCTaaaaaaa                                                                                                                   >  1:2628153/1‑150 (MQ=255)
                                   aTAAGGTAAAATTGATCATCACATTAGCTTATGGTTAAAAAATGCAAAAATCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAGTCAATTTGAATAAGACAATATTAAGAGCTaaaaaaa                                                                                                                   >  2:3750075/1‑150 (MQ=255)
                                   aTAAGGTAAAATTGATCATCACATTAGCTTATGGTTAAAAAATGCAAAAATCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAGTCAATTTGAATAAGACAATATTAAGAGCTaaaaaaa                                                                                                                   >  2:3750102/1‑150 (MQ=255)
                                       ggTAAAATTGATCATCACATTAGCTTATGGTTAAAAAATGCAAAAATCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAGTCAATTTGAATAAGACAATATTAAGAGCTAAAAAAATGTc                                                                                                               >  1:130754/1‑150 (MQ=255)
                                          aaaaTTGATCATCACATTAGCTTATGGTTAAAAAATGCAAACATCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAGTCAATTTGAATAAGACAATATTAAGAGCTAAAAAAATGTCaaa                                                                                                            >  1:1288745/1‑150 (MQ=255)
                                           aaaTTGATCATCACATTAGCTTATGGTTAAAAAATGCAAAAATCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAGTCAATTTGAATAAGACAATATTAAGAGCTAAAAAAATGTCaaaa                                                                                                           >  2:3661296/1‑150 (MQ=255)
                                            aaTTGATCATCACATTAGCTTATGGTTAAAAAATGCAAAAATCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAGTCAATTTGAATAAGACAATATTAAGAGCTAAAAAAATGTCaaaaa                                                                                                          <  2:2498492/150‑1 (MQ=255)
                                             aTTGATCATCACATTAGCTTATGGTTAAAAAATGCAAAAATCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAGTCAATTTGAATAAGACAATATTAAGAGCTAAAAAAATGTCaaaaaa                                                                                                         <  2:1903776/150‑1 (MQ=255)
                                                 atcatcACATTAGCTTATGGTTAAAAAATGCAAAAATCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAGTCAATTTGAATAAGACAATATTAAGAGCTAAAAAAATGTCAAAAAACACt                                                                                                     >  2:4345920/1‑150 (MQ=255)
                                                   catcaCATTAGCTTATGGTTAAAAAATGCAAAAATCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAGTCAATTTGAATAAGACAATATTAAGAGCTAAAAAAATGTCAAAAAACACTaa                                                                                                   >  2:1468987/1‑150 (MQ=255)
                                                   catcaCATTAGCTTATGGTTAAAAAATGCAAAAATCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAATCAATTTGAATAAGACAATATTAAGAGCTAAAAAAATGTCAAAAAACACTaa                                                                                                   >  1:3714957/1‑150 (MQ=255)
                                                    atcaCATTAGCTTATGGTTAAAAAATGCAAAAATCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAGTCAATTTGAATAAGACAATATTAAGAGCT‑AAAAAATGTCAAAAAACACTAAAt                                                                                                 <  2:1738223/150‑1 (MQ=255)
                                                      cacaTTAGCTTATGGTTAAAAAATGCAAAAATCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGGTGATGTGATGAGAAAGTCAATTTGAATAAGACAATATTAAGAGCTAAAAAAATGTCAAAAAACACTAAATc                                                                                                <  1:4011729/150‑1 (MQ=255)
                                                      cacaTTAGCTTATGGTTAAAAAATGCAAAAATCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAGTCAATTTGAATAAGACAATATTAAGAGCTAAAAAAATGTCAAAAAACACTAAATc                                                                                                <  1:2507152/150‑1 (MQ=255)
                                                        caTTAGCTTATGGTTAAAAAATGCAAAAATCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAGTCAATTTGAATAAGACAATATTAAGAGCTAAAAAAATGTCAAAAAACACTAAATCaa                                                                                              >  1:4073091/1‑150 (MQ=255)
                                                           tAGCTTATGGTTAAAAAATGCAAAAATCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAGTCAATTTGAATAAGACAATATTAAGAGCTAAAAAAATGTCAAAAAACACTAAATCaaaaa                                                                                           <  1:125316/150‑1 (MQ=255)
                                                            aGCTTATGGTTAAAAAATGCAAAAATCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAATCAATTTGAATAAGACAATATTAAGAGCTAAAAAAATGTCAAAAAACACTAAATCaaaaaa                                                                                          >  2:2065824/1‑150 (MQ=255)
                                                             gCTTATGGTTAAAAAATGCAAAAATCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAGTCAATTTGAATAAGACAATATTAAGAGCTAAAAAAATGTCAAAAAACACTAAATCAAAAaat                                                                                         >  1:4242419/1‑150 (MQ=255)
                                                             gCTTATGGTTAAAAAATGCAAAAATCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAGTCAATTTGAATAAGACAATATTAAGAGCTAAAAAAATGTCAAAAAACACTAAATCAAAAaat                                                                                         >  1:1771151/1‑150 (MQ=255)
                                                                tATGGTTAAAAAATGCAAAAATCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAGTCAATTTGAATAAGACAATATTAAGAGCTAAAAAAATGTCAAAAAACACTAAATCAAAAaataat                                                                                      >  1:156725/1‑150 (MQ=255)
                                                                 aTGGTTAAAAAATGCAAAAATCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAGTCAATTTGAATAAGACAATATTAAGAGCTAAAAAAATGTCAAAAAACACTAAATCAAAAAATAATg                                                                                     >  2:1227459/1‑150 (MQ=255)
                                                                  tGGTTAAAAAATGCAAAAATCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAGTCAATTTGAATAAGACAATATTAAGAGCTAAAAAAATGTCAAAAAACACTAAATCAAAAAATAATgg                                                                                    >  1:3059689/1‑150 (MQ=255)
                                                                    gTTAAAAAATGCAAAAATCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAGTCAATTTGAATAAGACAATATTAAGAGCTAAAAAAATGTCAAAAAACACTAAATCAAAAAATAATGGCa                                                                                  >  1:726773/1‑150 (MQ=255)
                                                                    gTTAAAAAATGCAAAAATCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAGTCAATTTGAATAAGACAATATTAAGAGCTAAAAAAATGTCAAAAAACACTAAATCAAAAAATAATGGCa                                                                                  >  1:810275/1‑150 (MQ=255)
                                                                      tAAAAAATGCAAAAATCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAGTCAATTTGAATAAGACAATATTAAGAGCTAAAAAAATGTCAAAAAACACTAAATCAAAAAATAATGGCAtt                                                                                >  2:20278/1‑150 (MQ=255)
                                                                             tGCAAAAATCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAATCAATTTGAATAAGACAATATTAAGAGCTAAAAAAATGTCAAAAAACACTAAATCAAAAAATAATGGCATTAGAAAat                                                                         <  1:4373478/150‑1 (MQ=255)
                                                                              gCAAAAATCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAGTCAATTTGAATAAGACAATATTAAGAGCTAAAAAAATGTCAAAAAACACTAAATCAAAAAATAATGGCATTAGAAAata                                                                        >  2:1377447/1‑150 (MQ=255)
                                                                               cAAAAATCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAGTCAATTTGAATAAGACAATATTAAGAGCTAAAAAAATGTCAAAAAACACTAAATCAAAAAATAATGGCATTAGAAAatat                                                                       <  2:3024437/150‑1 (MQ=255)
                                                                                 aaaaTCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAGTCAATTTGAATAAGACAATATTAAGAGCTAAAAAAATGTCAAAAAACACTAAATCAAAAAATAATGGCATTAGAAAATATaa                                                                     <  1:3562956/150‑1 (MQ=255)
                                                                                 aaaaTCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAGTCAATTTGAATAAGACAATATTAAGAGCTAAAAAAATGTCAAAAAACACTAAATCAAAAAATAATGGCATTAGAAAATATaa                                                                     >  1:2417260/1‑150 (MQ=255)
                                                                                 aaaaTCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAGTCAATTTGAATAAGACAATATTAAGAGCTAAAAAAATGTCAAAAAACACTAAATCAAAAAATAATGGCATTAGAAAATATaa                                                                     >  1:2417473/1‑150 (MQ=255)
                                                                                   caTCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAGTCAATTTGAATAAGACAATATTAAGAGCTAAAAAAATGTCAAAAAACACTAAATCAAAAAATAATGGCATTAGAAAATATAATg                                                                   >  2:3828155/2‑150 (MQ=255)
                                                                                   aaTCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAGTCAATTTGAATAAGACAATATTAAGAGCTAAAAAAATGTCAAAAAACACTAAATCAAAAAATAATGGCATTAGAAAATATAATg                                                                   >  1:1581821/1‑150 (MQ=255)
                                                                                     tCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAGTCAATTTGAATAAGACAATATTAAGAGCTAAAAAAATGTCAAAAAACACTAAATCAAAACATAATGGCATTAGAAAATATAATGCg                                                                 <  2:1945517/150‑1 (MQ=255)
                                                                                     tCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAGTCAATTTGAATAAGACAATATTAAGAGCTAAAAAAATGTCAAAAAACACTAAATCAAAAAATAATGGCATTAGAAAATATAATGCg                                                                 >  2:1066843/1‑150 (MQ=255)
                                                                                       gcgACAGAATAAAAAACCAAAAAATACACCCGTTTCTATACAAAGATGATGTGATGAGAAAGTCAATTTGAATAAGACAATATTAAGAGCTAAAAAAATGTCAAAAAACACTAAATCAAAAAATAATGGCATTAGAAAATATAATGCGaa                                                               <  2:1997401/150‑1 (MQ=255)
                                                                                       gcgACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAGTCAATTTGAATAAGACAATATTAAGAGCTAAAAAAATGTCAAAAAACACTAAATCAAAAAATAATGGCATTAGAAAATATAATGCGaa                                                               <  1:2186704/150‑1 (MQ=255)
                                                                                       gcgACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAGTCAATTTGAATAAGACAATATTAAGAGCTAAAAAAATGTCAAAAAACACTAAATCAAAAAATAATGGCATTAGAAAATATAATGCGaa                                                               <  2:2813644/150‑1 (MQ=255)
                                                                                         gACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAGTCAATTTGAATAAGACAATATTAAGAGCTAAAAAAATGTCAAAAAACACTAAATCAAAAAATAATGGCATTAGAAAATATAATGCGaaaa                                                             >  1:4423290/1‑150 (MQ=255)
                                                                                          aCAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAGTCAATTTGAATAAGACAATATTAAGAGCTAAAAAAATGTCAAAAAACACTAAATCAAAAAATAATGGCATTAGAAAATATAATGCGAAAAc                                                            >  1:4447868/1‑150 (MQ=255)
                                                                                            aGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAGTCAATTTGAATAAGACAATATTAAGAGCTAAAAAAATGTCAAAAAACACTAAATCAAAAAATAATGGCATTAGAAAATATAATGCGAAAACgg                                                          <  1:987272/150‑1 (MQ=255)
                                                                                              aaTAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAGTCAATTTGAATAAGACAATATTAAGAGCTAAAAAAATGTCAAAAAACACTAAATCAAAAAATAATGGCATTAGAAAATATAATGCGAAAACGGAg                                                        <  2:918939/150‑1 (MQ=255)
                                                                                                 aaaaaaCCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAGTCAATTTGAATAAGACAATATTAAGAGCTAAAAAAATGTCAAAAAACACTAAATCAAAAAATAATGGCATTAGAAAATATAATGCGAAAACGGAGGTg                                                     <  2:4177697/150‑1 (MQ=255)
                                                                                                 aaaaaaCCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAGTCAATTTGAATAAGACAATATTAAGAGCTAAAAAAATGTCAAAAAACACTAAATCAAAAAATAATGGCATTAGAAAATATAATGCGAAAACGGAGGTg                                                     <  2:3996424/150‑1 (MQ=255)
                                                                                                  aaaaaCCAAAAAACACACCAGTTTCTATACAAAGATGATGTGATGAGAAAGTCAATTTGAATAAGACAATATTAAGAGCTAAAAAAATGTCAAAAAACACTAAATCAAAAAATAATGGCATTAGAAAATATAATGCGAAAACGGAGGTGa                                                    >  1:1976935/1‑150 (MQ=255)
                                                                                                   aaaaCCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAGTCAATTTGAATAAGACAATATTAAGAGCTAAAAAAATGTCAAAAAACACTAAATCAAAAAATAATGGCATTAGAAAATATAATGCGAAAACGGAGGTGaa                                                   <  2:3092019/150‑1 (MQ=255)
                                                                                                    aaaCCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAGTCAATTTGAATAAGACAATATTAAGAGCTAAAAAAATGTCAAAAAACACTAAATCAAAAAATAATGGCATTAGAAAATATAATGCGAAAACGGAGGTGaaa                                                  >  2:3831277/1‑150 (MQ=255)
                                                                                                    aaaCCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAGTCAATTTGAATAAGACAATATTAAGAGCTAAAAAAATGTCAAAAAACACTAAATCAAAAAATAATGGCATTAGAAAATATAATGCGAAAACGGAGGTGaaa                                                  >  2:3309659/1‑150 (MQ=255)
                                                                                                    aaaCCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAGTCAATTTGAATAAGACAATATTAAGAGCTAAAAAAAGGTCAAAAAACACTAAATCAAAAAATAATGGCATTAGAAAATATAATGCGAAAACGGAGGTGaaa                                                  <  2:1513585/150‑1 (MQ=255)
                                                                                                       ccAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAGTCAATTTGAATAAGACAATATTAAGAGCTAAAAAAATGTCAAAAAACACTAAATCAAAAAATAATGGCATTAGAAAATATAATGCGAAAACGGAGGTGAAATTa                                               <  2:3538814/150‑1 (MQ=255)
                                                                                                        cAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAGTCAATTTGAATAAGACAATATTAAGAGCTAAAAAAATGTCAAAAAACACTAAATCAAAAAATAATGGCATTAGAAAATATAATGCGAAAACGGAGGTGAAATTAg                                              <  1:4345920/150‑1 (MQ=255)
                                                                                                           aaaaTACACCAGTTTCTATACAAAGATGATGTGATGAGAAAATCAATTTGAATAAGACAATATTAAGAGCTAAAAAAATGTCAAAAAACACTAAATCAAAAAATAATGGCATTAGAAAATATAATGCGAAAACGGAGGTGAAATTAGttt                                           <  1:1442131/150‑1 (MQ=255)
                                                                                                             aaTACACCAGTTTCTATACAAAGATGATGTGATGAGAAAGTCAATTTGAATAAGACAATATTAAGAGCTAAAAAAATGTCAAAAAACACTAAATCAAAAAATAATGGCATTAGAAAATATAATGCGAAAACGGAGGTGAAATTAGTTTAt                                         >  2:2510349/1‑150 (MQ=255)
                                                                                                                 cacCAGTTTCTATACAAAGATGATGTGATGAGAAAGTCAATTTGAATAAGACAATATTAAGAGCTAAAAAAATGTCAAAAAACACTAAATCAAAAAATAATGGCATTAGAAAATATAATGCGAAAACGGAGGTGAAATTAGTTTATTTCa                                     >  2:62501/1‑150 (MQ=255)
                                                                                                                    cAGTTTCTATACAAATATGATGTTATGAGAAAGTCAATTTGAATAAGAAAATATTAAGAGCTAAAAAAATGTCTAAAAACCCTAAATCAAACAATAATGGCATTAGAAAATATAATGCGAAAACGGAGGTGAAATTAGTTTATTTCAAAt                                  <  1:3829802/150‑1 (MQ=255)
                                                                                                                     aGTTTCTATACAAAGATGATGTGATGAGAAAGTCAATTTGAATAAGACAATATTAAGAGCTAAAAAAATGTCAAAAAACACTAAATCAAAAAATAATGGCATTAGAAAATATAATGCGAAAACGGAGGTGAAATTAGTTTATTTCAAATg                                 >  2:237424/1‑150 (MQ=255)
                                                                                                                        ttCTATACAAAGATGATGTGATGAGAAAGTCAATTTGAATAAGACAATATTAAGAGCTAAAAAAATGTCAAAAAACACTAAATCAAAAAATAATGGCATTAGAAAATATAATGCGAAAACGGAGGTGAAATTAGTTTATTTCAAATGAgg                              >  1:1655300/1‑150 (MQ=255)
                                                                                                                        ttCTATACAAAGATGATGTGATGAGAAAGTCAATTTGAATAAGACAATATTAAGAGCTAAAAAAATGTCAAAAAACACTAAATCAAAAAATAATGGCATTAGAAAATATAATGCGAAAACGGAGGTGAAATTAGTTTATTTCAAATGAgg                              >  2:286466/1‑150 (MQ=255)
                                                                                                                          cTATACAAAGATGATGTGATGAGAAAGTCAATTTGAATAAGACAATATTAAGAGCTAAAAAAATGTCAAAAAACACTAAATCAAAAAATAATGGCATTAGAAAATATAATGCGAAAACGGAGGTGAAATTAGTTTATTTCAAATGAGGaa                            >  1:3742890/1‑150 (MQ=255)
                                                                                                                             taCAAAGATGATGTGATGAGAAAATCAATTTGAATAAGACAATATTAAGAGCTAAAAAAATGTCAAAAAACACTAAATCAAAAAATAATGGCATTAGAAAATATAATGCGAAAACGGAGGTGAAATTAGTTTATTTCAATTGAGGAAAAt                         >  1:3126737/1‑150 (MQ=255)
                                                                                                                               taaaGATGATGTGATGAGAAAGTCAATTTGAATAAGACAATATTAAGAGCTAAAAAAATGTCAAAAAACACTAAATCAAAAAATAATGGCATTAGAAAATATAATGCGAAAACGGAGGTGAAATTAGTTTATTTCAAATGAGGAAAAtct                       >  1:3667050/2‑150 (MQ=255)
                                                                                                                                 aaGATGATGTGATGAGAAAGTCAATTTGAATAAGACAATATTAAGAGCTAAAAAAATGTCAAAAAACACTAAATCAAAAAATAATGGCATTAGAAAATATAATGCGAAAACGGAGGTGAAATTAGTTTATTTCAAATGAGGAAAATCTcc                     >  2:3325412/1‑150 (MQ=255)
                                                                                                                                   gatgatGTTATGAGAAAGTCAATTTGAATAATACAATATTAAGAGCTAAAAAAATGTCAAAAAACACTAAATCAAAAAATAATGGCATTAGAAAATATAATGCGAAAACGGAGGTGAAATTAGTTTATTTCAAATGAGGAAAATCTCCCg                   <  1:891275/150‑1 (MQ=255)
                                                                                                                                      gatgtgatgAGAAAGTCAATTTGAATAAGACAATATTAAGAGCTAAAAAAATGTCAAAAAACACTAAATCAAAAAATAATGGCATTAGAAAATATAATGCGAAAACGGAGGTGAAATTAGTTTATTTCAAATGAGGAAAATCTCCCGGCg                <  2:4472428/150‑1 (MQ=255)
                                                                                                                                        tgtgatgAGAAAGTCAATTTGAATAAGACAATATTAAGAGCTAAAAAAATGTCAAAAAACACTAAATCAAAAAATAATGGCATTAGAAAATATAATGCGAAAACGGAGGTGAAATTAGTTTATTTCAATTGAGGAAAATCTCCCGGCGaa              >  2:455746/1‑150 (MQ=255)
                                                                                                                                        tgtgatgAGAAAGTCAATTTGAATAAGACAATATTAAGAGCTAAAAAAATGTCAAAAAACACTAAATCAAAAAATAATGGCATTAGAAAATATAATGCGAAAACGGAGGTGAAATTAGTTTATTTCAAATGAGGAAAATCTCCCGGCGaa              >  1:4569173/1‑150 (MQ=255)
                                                                                                                                         gtgatgAGAAAGTCAATTTGAATAAGACAATATTAAGAGCTAAAAAAATGTCAAAAAACACTAAATCAAAAAATAATGGCATTAGAAAATATAATGCGAAAACGGAGGTGAAATTAGTTTATTTCAAATGAGGAAAATCTCCCGGCGaaa             >  2:2965368/1‑150 (MQ=255)
                                                                                                                                           gatgaGAAAGTCAATTTGAATAAGACAATATTAAGAGCTAAAAAAATGTCAAAAAACACTAAATCAAAAAATCATGGCATTAGAAAATATAATGCGAAAACGGAGGTGAAATTAGTTTATTTCAAATGAGGAAAATCTCCCGGCGaaaaa           <  2:2907063/150‑1 (MQ=255)
                                                                                                                                             tgaGAAAATCAATTTGAATAAGACAATATTAAGAGATAAAAAAATGTCAAAAAACAATAAATCAAAAAATAATGTCATTAGTAAATATAATGCGAAAACTGAGGTGAAATTAGTTTATTTCAAATGAGGAAAATCTCCCGGCGAAAAAAc         <  2:2628153/150‑1 (MQ=255)
                                                                                                                                                gaAAGTCAATTTGAATAAGACAATATTAAGAGCTAAAAAAATGTCAAAAAACACTAAATCAAAAAATAATGGCATTAGAAAATATAATGCGAAAACGGAGGTGAAATTAGTTTATTTCAAATGAGGAAAATCTCCCGGCGAAAAAACCgg      >  2:3293569/1‑150 (MQ=255)
                                                                                                                                                   aGTCTATTTGAATAAGACAATATTAAGAGCTAACAAATTGTAAAAAAACACTAAATCAAAAAATACTGGCATTATAAAATATAATGCGAAAACGGAGGTGAAATTAGTTTATTTCAAATGAGGAAAATCTCCCGGCGAAAAAACCGGgag   <  1:3602731/150‑1 (MQ=255)
                                                                                                                                                    gTCAATTTGAATAAGACAATATTAAGAGCTAAAAAAATGTCAAAAAACACTAAATCAAAAAATAATGGCATTAGAAAATATAATGCGAAAACGGAGGTGAAATTAGTTTATTTCAAATGAGGAAAATCTCCCGGCGAAAAAACCGGgaga  <  2:1920127/150‑1 (MQ=255)
                                                                                                                                                    |                                                                                                                                                     
TTGCCTGAACTTACCACCGAAACAGACTGTTAACCATAAGGTAAAATTGATCATCACATTAGCTTATGGTTAAAAAATGCAAAAATCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAGTCAATTTGAATAAGACAATATTAAGAGCTAAAAAAATGTCAAAAAACACTAAATCAAAAAATAATGGCATTAGAAAATATAATGCGAAAACGGAGGTGAAATTAGTTTATTTCAAATGAGGAAAATCTCCCGGCGAAAAAACCGGGAGA  >  CP009273/3044133‑3044430

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A