Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F159 I0 R1 879 305.9 9588012 96.6% 9262019 150.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP009273 3,044,281 G→A 26.5% intergenic (‑255/+193) gcvT ← / ← ubiI aminomethyltransferase, tetrahydrofolate‑dependent, subunit (T protein) of glycine cleavage complex/2‑octaprenylphenol hydroxylase, FAD‑dependent

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0092733,044,2810GA26.5% 244.3 / 96.1 129intergenic (‑255/+193)gcvT/ubiIaminomethyltransferase, tetrahydrofolate‑dependent, subunit (T protein) of glycine cleavage complex/2‑octaprenylphenol hydroxylase, FAD‑dependent
Reads supporting (aligned to +/- strand):  ref base G (42/52);  new base A (14/20);  total (56/73)
Fisher's exact test for biased strand distribution p-value = 8.41e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.04e-01

Only 100 of 131 total aligned reads displayed.

TTTGCCTGAACTTACCACCGAAACAGACTGTTAACCATAAGGTAAAATTGATCATCACATTAGCTTATGGTTAAAAAATGCAAAAATCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAGTCAATTTGAATAAGACAATATTAAGAGCTAAAAAAATGTCAAAAAACACTAAATCAAAAAATAATGGCATTAGAAAATATAATGCGAAAACGGAGGTGAAATTAGTTTATTTCAAATGAGGAAAATCTCCCGGCGAAAAAACCGG  >  CP009273/3044132‑3044426
                                                                                                                                                     |                                                                                                                                                 
tttGCCTGAACTTACCACCGAAACAGACTGTTAACCATAAGGTAAAATTGATCATCACATTAGCTTATGGTTAAAAAATGCAAAAATCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAg                                                                                                                                                   <  2:1285840/150‑1 (MQ=255)
tttGCCTGAACTTACCACCGAAACAGACTGTTAACCATAAGGTAAAATTGATCATCACATTAGCTTATGGTTAAAAAATGCAAAAATCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAg                                                                                                                                                   <  2:3697370/150‑1 (MQ=255)
        aaCTTACCACCGAAACAGACTGTTAACCATAAGGTAAAATTGATCATCACATTAGCTTATGGTTAAAAAATGCAAAAATCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAGTCAATTTg                                                                                                                                           >  1:1803215/1‑150 (MQ=255)
          cTTACCACCGAAACAGACTGTTAACCATAAGGTAAAATTGATCATCACATTAGCTTATGGTTAAAAAATGCAAAAATCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAGTCAATTTGaa                                                                                                                                         >  2:1192320/1‑150 (MQ=255)
             accaccGAAACAGACTGTTAACCATAAGGTAAAATTGATCATCACATTAGCTTATGGTTAAAAAATGCAAAAATCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAGTCAATTTGAATaa                                                                                                                                      <  1:3924780/150‑1 (MQ=255)
             accaccGAAACAGACTGTTAACCATAAGGTAAAATTGATCATCACATTAGCTTATGGTTAAAAAATGCAAAAATCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAGTCAATTTGAATaa                                                                                                                                      <  1:3924792/150‑1 (MQ=255)
              ccaccGAAACAGACTGTTAACCATAAGGTAAAATTGATCATCACATTAGCTTATGGTTAAAAAATGCAAAAATCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAGTCAATTTGAATAAg                                                                                                                                     <  1:3958658/150‑1 (MQ=255)
                accGAAACAGACTGTTAACCATAAGGTAAAATTGATCATCACATTAGCTTATGGTTAAAAAATGCAAAAATCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAGTCAATTTGAATAAGAc                                                                                                                                   <  2:3968022/150‑1 (MQ=255)
                 actaaaCAGACTGTAAACCATAAGGTAAAATTTATCATCACCTTATCTTATGTTTATAAAATGCTAAAATCGCGACAGAATAAAAAACCATAAAATACTCCAGTTTATATACAAAGATGATGTGATGAGAAAATCAATTTGAATAAGACa                                                                                                                                  <  2:2792434/147‑1 (MQ=255)
                  cGAAACAGACTGTTAACCATAAGGTAAAATTGATCATCACATTAGCTTATGGTTTAAAAATGCAAAAATCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATTTGATGAGAAAATCAATTTGAATAAGACaa                                                                                                                                 <  2:2793634/150‑1 (MQ=255)
                  cGAAACAGACTGTTAACCATAAGGTAAAATTGATCATCACATTAGCTTATGGTTAAAAAATGCAAAAATCGCGACAGAATAAAAAACAAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAGTCAATTTGAATAAGACaa                                                                                                                                 <  1:2143771/150‑1 (MQ=255)
                     aaCAGACTGTTAACCATAAGGTAAAATTGATCATCACATTAGCTTATGGTTAAAAAATGCAAAAATCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAGTCAATTTGAATAAGACAatat                                                                                                                              >  1:103910/1‑150 (MQ=255)
                     aaCAGACTGTTAACCATAAGGTAAAATTGATCATCACATTAGATTATGGTTAAAAAATGCAAAAATCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAGTCAATTTGAATAAGACAatat                                                                                                                              <  2:4388289/150‑1 (MQ=255)
                      aCAGACTGTTAACCATAAGGTAAAATTGATCATCACATTAGCTTATGGTTAAAAAATGCAAAAATCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGTTGATGTGATGAGAAAGTCAATTTGAATAAGACAATAtt                                                                                                                             <  2:3699826/150‑1 (MQ=255)
                      aCAGACTGTTAACCATAAGGTAAAATTGATCATCACATTAGCTTATGGTTAAAAAATGCAAAAATCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAGTCAATTTGAATAAGACAATAtt                                                                                                                             <  2:1288925/150‑1 (MQ=255)
                        aGACTGTTAACCATAAGGTAAAATTGATCATCACATTAGCTTATGGTTAAAAAATGCAAAAATCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAGTCAATTTGAATAAGACAATATTaa                                                                                                                           <  2:1634864/150‑1 (MQ=255)
                          aCTGTTAACCATAAGGTAAAATTGATCATCACATGAGCTTATGGATAAAAAATGCAAAAATCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAGTCAATTTGAATAAGACAATATTAaga                                                                                                                         <  2:2109960/150‑1 (MQ=255)
                                aaCCATAACTTAAAATTGATCATCACATTATCGTATGGATAAAAAATGCAAAAATCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAATCAATTTGAATAAGACAATATTAAGAGCTaaa                                                                                                                   <  2:2938018/150‑1 (MQ=255)
                                 aCCATAAGGTAAAATTGATCATCACATTAGCTTATGGTTAAAAAATGCAAAAATCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAGTCAATTTGAATAAGACAATATTAAGAGCTaaaa                                                                                                                  <  2:1181625/150‑1 (MQ=255)
                                  ccATAAGGTAAAATTGATCATCACATTAGCTTATGGTTAAAAAATGCAAAAATCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAGTCAATTTGAATAAGACAATATTAAGAGCTaaaaa                                                                                                                 >  1:1740374/1‑150 (MQ=255)
                                   cATAAGGTAAAATTGATCATCACATTAGCTTATGGTTAAAAAATGCAAAAATCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAGTCAATTTGAATAAGACAATATTAAGAGCTaaaaaa                                                                                                                >  1:673443/1‑150 (MQ=255)
                                   cATAAGGTAAAATTGATCATCACATTAGCTTATGGTTAAAAAATGCAAAAATCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAATCAATTTGAATAAGACAATATTAAGAGCTaaaaaa                                                                                                                >  1:4126703/1‑150 (MQ=255)
                                      aaGGTAAAATTGATCATCACATTAGCTTATGTTTAAAAAATGCAAAAATCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAATCAATTTGAATAAGACAATATTAAGAGCTAAAAAAATg                                                                                                             <  2:2218810/150‑1 (MQ=255)
                                      aaGGTAAAATTGATCATCACATTAGCTTATGGTTAAAAAATGCAAAAATCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAGTCAATTTGAATAAGACAATATTAAGAGCTAAAAAAATg                                                                                                             >  1:4430849/1‑150 (MQ=255)
                                      aaGGTAAAATTGATCATCACATTAGCTTATGGTTAAAAAATGCAAAAATCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAGTCAATTTGAATAAGACAATATTAAGAGCTAAAAAAATg                                                                                                             <  2:1803215/150‑1 (MQ=255)
                                        ggTAAAATTGATCATCACATTAGCTTATGGTTAAAAAATGCAAAAATCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAGTCAATTTGAATAAGACAATATTAAGAGCTAAAAAAATGTc                                                                                                           <  2:136610/150‑1 (MQ=255)
                                         gTAAAATTGATCATCACATTAGCTTATGGTTAAAAAATGCAAAAATCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAATCAATTTGAATAAGACAATATTAAGAGCTAAAAAAATGTCa                                                                                                          <  1:3492663/150‑1 (MQ=255)
                                         gTAAAATTGATCATCACATTAGCTTATGGTTAAAAAATGCAAAAATCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAATCAATTTGAATAAGACAATATTAAGAGCTAAAAAAATGTCa                                                                                                          <  1:1087419/150‑1 (MQ=255)
                                           aaaaTTGATCATCACATTAGCTTATGGTTAAAAAATGCAAAAATCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAGTCAATTTGAATAAGACAATATTAAGAGCTAAAAAAATGTCaaa                                                                                                        >  1:2556141/1‑150 (MQ=255)
                                               ttGATCATCACATTAGCTTATGGTTAAAAAATGCAAAAATCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAGTCAATTTGAATAAGACAATATTAAGAGCTAAAAAAATGTCAAAAAac                                                                                                    >  2:2794357/1‑150 (MQ=255)
                                                tGATCATCACATTAGCTTATGGTTAAAAAATGCAAAAATCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAGTCAATTTGAATAAGACAATATTAAGAGCTAAAAAAATGTCAAAAAaca                                                                                                   <  2:103661/150‑1 (MQ=255)
                                                tGATCATCACATTAGCTTATGGTTAAAAAATGCAAAAATCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAGTCAATTTGAATAAGACAATATTAAGAGCTAAAAAAATGTCAAAAAaca                                                                                                   <  2:103648/150‑1 (MQ=255)
                                                tGATCATCACATTAGCTTATGGTTAAAAAATGCAAAAATCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAGTCAATTTGAATAAGACAATATTAAGAGCTAAAAAAATGTCAAAAAaca                                                                                                   >  2:313725/1‑150 (MQ=255)
                                                  atcatcACATTAGCTTATGGTTAAAAAATGCAAAAATCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAGTCAATTTGAATAAGACAATATTAAGAGCTAAAAAAATGTCAAAAAACACt                                                                                                 >  2:2174599/1‑150 (MQ=255)
                                                   tcatcaCATTAGCTTATGGTTAAAAAATGCAAAAATCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAATCAATTTGAATAAGACAATATTAAGAGCTAAAAAAATGTCAAAAAACACTa                                                                                                <  2:4420646/150‑1 (MQ=255)
                                                    catcaCATTAGCTTATGGTTAAAAAATGCAAAAATCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAGTCAATTTGAATAAGACAATATTAAGAGCTAAAAAAATGTCAAAAAACACTaa                                                                                               >  1:1542558/1‑150 (MQ=255)
                                                    catcaCATTAGCTTATGGTTAAAAAATGCAAAAATCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAATCAATTTGAATAAGACAATATTAAGAGCTAAAAAAATGTCAAAAAACACTaa                                                                                               >  2:2354335/1‑150 (MQ=255)
                                                     atcaCATTAGCTTATGGTTAAAAAATGCAAAAATCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAGTCAATTTGAATAAGACAATATTAAGAGCTAAAAAAATGTCAAAAAACACTaaa                                                                                              >  2:3205336/1‑150 (MQ=255)
                                                     aacaaaTTAGATTATGTTTAAAAAATGCAAAAATCTCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGATAAAGTCAATTTGAATAAGACAATATTAAGAGCTAAAAAAATGTCAAAAAACACTaaa                                                                                              <  2:4301151/145‑1 (MQ=255)
                                                      tcaCATTAGCTTATGGTTAAAAAATGCAAAAATCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAGTCAATTTGAATAAGACAATATTAAGAGCTAAAAAAATGTCAAAAAACACTAAAt                                                                                             <  1:2502249/150‑1 (MQ=255)
                                                      tcaCATTAGCTTATGGTTAAAAAATGCAAAAATCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAATCAATTTGAATAAGACAATATTAAGAGCTAAAAAAATGTCAAAAAACACTAAAt                                                                                             <  2:1697747/150‑1 (MQ=255)
                                                        acaTTAGCTTATGGTTAAAAAATGCAAAAATCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAGTCAATTTGAATAAGACAATATTAAGAGCTAAAAAAATGTCAAAAAACACTAAATCa                                                                                           >  2:2114511/1‑150 (MQ=255)
                                                          aTTAGCTTATGGTTAAAAAATGCAAAAATCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAGTCAATTTGAATAAGACAATATTAAGAGCTAAAAAAATGTCAAAAAACACTAAATCaaa                                                                                         >  2:1754066/1‑150 (MQ=255)
                                                           ttAGCTTATGGTTAAAAAATGCAAAAATCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAGTCAATTTGAATAAGACAATATTAAGAGCTAAAAAAATGTCAAAAAACACTAAATCaaaa                                                                                        <  1:4612479/150‑1 (MQ=255)
                                                             aGCTTATGGTTAAAAAATGCAAAAATCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAGTCAATTTGAATAAGACAATATTAAGAGCTAAAAAAATGTCAAAAAACACTAAATCaaaaaa                                                                                      <  1:2654278/150‑1 (MQ=255)
                                                             aGCTTATGGTTAAAAAATGCAAAAATCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAATCAATTTGAATAAGACAATATTAAGAGCTAAAAAAATGTCAAAAAACACTAAATCaaaaaa                                                                                      >  1:1197352/1‑150 (MQ=255)
                                                             aGCTTATGGTTAAAAAATGCAAAAATCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAATCAATTTGAATAAGACAATATTAAGAGCTAAAAAAATGTCAAAAAACACTAAATCaaaaaa                                                                                      >  1:1916818/1‑150 (MQ=255)
                                                             aGCTTATGGTTAAAAAATGCAAAAATCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAATCAATTTGAATAAGACAATATTAAGAGCTAAAAAAATGTCAAAAAACACTAAATCaaaaaa                                                                                      >  1:1916795/1‑150 (MQ=255)
                                                              gCTTATGGTTAAAAAATGCAAAAATCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAGTCAATTTGAATAAGACAATATTAAGAGCTAAAAAAATGTCAAAAAACACTAAATCAAAAaat                                                                                     <  1:264947/150‑1 (MQ=255)
                                                              gCTTATGGTTAAAAAATGCAAAAATCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAGTCAATTTGAATAAGACAATATTAAGAGCTAAAAAAATGTCAAAAAACACTAAATCAAAAaat                                                                                     <  1:267383/150‑1 (MQ=255)
                                                               cTTATGGTTAAAAAATGCAAAAATCGCGACATAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGATAAAGTCAATTTGAATAAGACAATATTAAGAGCTAAAAAAATGTCAAAAAACACTAAATCAAAAaata                                                                                    <  2:650194/150‑1 (MQ=255)
                                                                ttATGGTTAAAAAATGCAAAAATCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAGTCAATTTGAATAAGACAATATTAAGAGCTAAAAAAATGTCAAAAAACACTAAATCAAAAaataa                                                                                   <  2:4271284/150‑1 (MQ=255)
                                                                 tATGGTTAAAAAATGCAAAAATCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAGTCAATTTGAATAAGACAATATTAAGAGCTAAAAAAATGTCAAAAAACACTAAATCAAAAaataat                                                                                  <  2:3261477/150‑1 (MQ=255)
                                                                 tATGGTTAAAAAATGCAAAAATCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAGTCAATTTGAATAAGACAATATTAAGAGCTAAAAAAATGTCAAAAAACACTAAATCAAAAaataat                                                                                  <  1:1085439/150‑1 (MQ=255)
                                                                  aTGGTTAAAAAATGCAAAAATCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAGTCAATTTGAATAAGACAATATTAAGAGCTAAAAAAATGTCAAAAAACACTAAATCAAAAAATAATg                                                                                 >  1:4025252/1‑150 (MQ=255)
                                                                    ggTTAAAAAATGCAAAAATCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAGTCAATTTGAATAAGACAATATTAAGAGCTAAAAAAATGTCAAAAAACACTAAATCAAAAAATAATGGc                                                                               <  2:1529465/150‑1 (MQ=255)
                                                                       tAAAAAATGCAAAAATCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAGTCAATTTGAATAAGACAATATTAAGAGCTAAAAAAATGTCAAAAAACACTAAATCAAAAAATAATGGCAtt                                                                            <  2:1066960/150‑1 (MQ=255)
                                                                        aaaaaaTGCAAAAATCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAGTCAATTTGAATAAGACAATATTAAGAGCTAAAAAAATGTCAAAAAACACTAAATCAAAAAATAATGGCATTa                                                                           >  2:4076094/1‑150 (MQ=255)
                                                                          aaaaTGAAAAAATCTCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATTATGTGATGAGAAAATCAATTTGAATAAGACAATATTAAGAGCTAAAAAAATGTCAAAAAACACTAAATCAAAAAATAATGGCATTAGa                                                                         <  2:3069390/150‑1 (MQ=255)
                                                                            aaTGCAAAAATCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAGTCAATTTGAATAAGACAATATTAAGAGCTAAAAAAATGTCAAAAAACACTAAATCAAAAAATAATGGCATTAGaaa                                                                       <  2:1456632/150‑1 (MQ=255)
                                                                              tGCAAAAATCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAGTCAATTTGAATAAGACAATATTAAGAGCTAAAAAAATGTCAAAAAACACTAAATCAAAAAATAATGGCATTAGAAAat                                                                     <  1:1860315/150‑1 (MQ=255)
                                                                              tGCAAAAATCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAGTCAATTTGAATAAGACAATATTAAGAGCTAAAAAAATGTCAAAAAACACTAAATCAAAAAATAATGGCATTAGAAAat                                                                     >  2:4775977/1‑150 (MQ=255)
                                                                              tGCAAAAATCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAGTCAATTTGAATAAGACAATATTAAGAGCTAAAAAAATGTCAAAAAACACTAAATCAAAAAATAATGGCATTAGAAAat                                                                     <  1:1860187/150‑1 (MQ=255)
                                                                              tGCAAAAATCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAGTCAATTTGAATAAGACAATATTAAGAGCTAAAAAAATGTCAAAAAACACTAAATCAAAAAATAATGGCATTAGAAAat                                                                     <  1:1849127/150‑1 (MQ=255)
                                                                               gCAAAAATCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAGTCAATTTGAATAAGACAATATTAAGAGCTAAAAAAATGTCAAAAAACACTAAATCAAAAAATAATGGCATTAGAAAata                                                                    <  2:3804909/150‑1 (MQ=255)
                                                                                   aaaTCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAGTCAATTTGAATAAGACAATATTAAGAGCTAAAAAAATGTCAAAAAACACTAAATCAAAAAATAATGGCATTAGAAAATATAAt                                                                >  2:2175866/1‑150 (MQ=255)
                                                                                   aaaTCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAGTCAATTTGAATAAGACAATATTAAGAGCTAAAAAAATGTCAAAAAACACTAAATCAAAAAATAATGGCATTAGAAAATATAAt                                                                <  1:2032643/150‑1 (MQ=255)
                                                                                   aaaTCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAATCAATTTGAATAAGACAATATTAAGAGCTAAAAAAATGTCAAAAAACACTAAATCAAAAAATAATGGCATTAGAAAATATAAt                                                                <  1:2613628/150‑1 (MQ=255)
                                                                                    aaTCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAGTCAATTTGAATAAGACAATATTAAGAGCTAAAAAAATGTCAAAAAACACTAAATCAAAAAATAATGGCATTAGAAAATATAATg                                                               >  1:4685013/1‑150 (MQ=255)
                                                                                    aaTCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAGTCAATTTGAATAAGACAATATTAAGAGCTAAAAAAATGTCAAAAAACACTAAATCAAAAAATAATGGCATTAGAAAATATAATg                                                               >  1:4685027/1‑150 (MQ=255)
                                                                                    aaTCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAGTCAATTTGAATAAGACAATATTAAGAGCTAAAAAAATGTCAAAAAACACTAAATCAAAAAATAATGGCATTAGAAAATATAATg                                                               >  1:2254311/1‑150 (MQ=255)
                                                                                     aTCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAGTCAATTTGAATAAGACAATATTAAGAGCTAAAAAAATGTCAAAAAACACTAAATCAAAAAATAATGGCATTAGAAAATATAATGc                                                              >  2:4690036/1‑150 (MQ=255)
                                                                                      tCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAGTCAATTTGAATAAGACAATATTAAGAGCTAAAAAAATGTCAAAAAACACTAAATCAAAAAATAATGGCATTAGAAAATATAATGCg                                                             <  1:4754499/150‑1 (MQ=255)
                                                                                       cgcgACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAGTCAATTTGAATAAGACAATATTAAGAGCTAAAAAAATGTCAAAAAACACTAAATCAAAAAATAATGGCATTAGAAAATATAATGCGa                                                            >  2:210678/1‑150 (MQ=255)
                                                                                                      aaCCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAATCAATTTGAATAAGACAATATTAAGAGCTAAAAAAATGTCAAAAAACACTAAATCAAAAAATAATGGCATTAGAAAATATAATGCGAAAACGGAGGTGAAAt                                             >  2:192708/1‑150 (MQ=255)
                                                                                                       aCCAAAAAATACACCATTTTCTATACAAAGATTATGTGATGAGAAAGTCAATTTGAATAATACAATATTAAGAGATAAAAAAATGTCAAAAAACACTAAATCAAAAAATAATGGCATTAGAAAATATAATGCGAAAACGGAGGTGAAAtt                                            <  1:299527/150‑1 (MQ=255)
                                                                                                        ccAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAGTCAATTTGAATAAGACAATATTAAGAGCTAAAAAAATGTCAAAAAACACTAAATCAAAAAATAATGGCATTAGAAAATATAATGCGAAAACGGAGGTGAAATTa                                           <  2:673443/150‑1 (MQ=255)
                                                                                                          aaaaaaTACACCAGTTTCTATACAAAGATGATGTGATGAGAAAATCAATTTGAATAAGACAATATTAAGAGCTAAAAAAATGTCAAAAAACACTAAATCAAAAAATAATGGCATTAGAAAATATAATGCGAAAACGGAGGTGAAATTAGt                                         >  1:218619/1‑150 (MQ=255)
                                                                                                               aTACACCAGTTTCTATACAAAGATGATGTGATGAGAAAGTCAATTTGAATAAGACAATATTAAGAGCTAAAAAAATGTCAAAAAACACTAAATCAAAAAATAATGGCATTAGAAAATATAATGCGAAAACGGAGGTGAAATTAGTTTAtt                                    >  1:3042989/1‑150 (MQ=255)
                                                                                                               aTACACCAGTTTCTATACAAAGATGATGTGATGAGAAAGTCAATTTGAATAAGACAATATTAAGAGCTAAAAAAATGTCAAAAAACACTAAATCAAAAAATAATGGCATTAGAAAATATAATGCGAAAACGGAGGTGAAATTAGTTTAtt                                    >  1:3045096/1‑150 (MQ=255)
                                                                                                                tACACCAGTTTCTATACAAAGATGATGTGATGAGAAAGTCAATTTGAATAAGACAATATTAAGAGCTAAAAAAATGTCAAAAAACACTAAATCAAAAAATAATGGCATTAGAAAATATAATGCGAAAACGGAGGTGAAATTAGTTTAttt                                   <  2:4111357/150‑1 (MQ=255)
                                                                                                                 accccAGTTTCTATACAAAGATGAGGTGATGAGAAAATCAATTTGAATAAGACAATATTAAGAGCTAAAAAAATGTCAACAAACACTACATCAAAAAATAATGGCATTAGAAAATATAATGCGAAAACGGAGGTGAAATTAGTTTATTTc                                  <  2:4346071/147‑1 (MQ=255)
                                                                                                                  cacCAGTTTCTATACAAAGATGATGTGATGAGAAAGTCAATTTGAATAAGACAATATTAAGAGCTAAAAAAATGTCAAAAAACACTAAATAAAAAAATAAGGGCATTAGAAAATATAATGCGAAAACGGAGGTGAAATTAGTTTATTTCa                                 <  1:638746/150‑1 (MQ=255)
                                                                                                                      aGTTTCTATACAAAGATGATGTGATGAGAAAGTCAATTTGAATAAGACAATATTAAGAGCTAAAAAAATGTCAAAAAACACTAAATCAAAAAATAATGGCATTAGAAAATATAATGCGAAAACGGAGGTGAAATTAGTTTATTTCAAATg                             >  1:4389129/1‑150 (MQ=255)
                                                                                                                      aGTTTCTATACAAAGATGATGTGATGAGAAAGTCAATTTGAATAAGACAATATTAAGAGCTAAAAAAATGTCAAAAAACACTAAATCAAAAAATAATGGCATTAGAAAATATAATGCGAAAACGGAGGTGAAATTAGTTTATTTCAAATg                             >  1:4410224/1‑150 (MQ=255)
                                                                                                                           cTATACAAAGATGATGTGATGAGAAAGTCAATTTGAATAAGACAATATTAAGAGCTAAAAAAATGTCAAAAAACACTAAATCAAAAAATAATGGCATTAGAAAATATAATGCGAAAACGGAGGTGAAATTAGTTTATTTCAAATGAGGaa                        >  1:1387972/1‑150 (MQ=255)
                                                                                                                            tataCAAAGATGATGTGATGAGAAAATCAATTTGAATAAGACAATATTAAGAGCTAAAAAAATGTCAAAAAACACTAAATCAAAAAATAATGGCATTAGAAAATATAATGCGAAAACGGAGGTGAAATTAGTTTATTTCAAATGAGGaaa                       >  1:2960080/1‑150 (MQ=255)
                                                                                                                            tataCAAAGATGATGTGATGAGAAAATCAATTTGAATAAGACAATATTAAGAGCTAAAAAAATGTCAAAAAACACTAAATCAAAAAATAATGGCATTAGAAAATATAATGCGAAAACGGAGGTGAAATTAGTTTATTTCAAATGAGGaaa                       >  1:2959544/1‑150 (MQ=255)
                                                                                                                            tataCAAAGATGATGTGATGAGAAAATCAATTTGAATAAGACAATATTAAGAGCTAAAAAAATGTCAAAAAACACTAAATCAAAAAATAATGGCATTAGAAAATATAATGCGAAAACGGAGGTGAAATTAGTTTATTTCAAATGAGGaaa                       >  1:2961882/1‑150 (MQ=255)
                                                                                                                              taCAAAGATGATGTGATGAGAAAGTCAATTTGAATAAGACAATATTAAGAGCTAAAAAAATGTCAAAAAACACTAAATCAAAAAATAATGGCATTAGAAAATATAATGCGAAAACGGAGGTGAAATTAGTTTATTTCAAATGAGGAAAAt                     >  1:3957544/1‑150 (MQ=255)
                                                                                                                              taCAAAGATGATGTGATGAGAAAATCAATTTGAATAAGACAATATTAAGAGCTAAAAAAATGTCAAAAAACACTAAATCAAAAAATAATGGCATTAGAAAATATAATGCGAAAACGGAGGTGAAATTAGTTTATTTCAAATGAGGAAAAt                     >  2:1265913/1‑150 (MQ=255)
                                                                                                                                 aaaGATGATGTGATGAGAAAGTCAATTTGAATAAGACAATATTAAGAGCTAAAAAAATGTCAAAAAACACTAAATCAAAAAATAATGGCATTAGAAAATATAATGCGAAAACGGAGGTGAAATTAGTTTATTTCAAATGAGGAAAAtctc                  >  1:1889418/1‑150 (MQ=255)
                                                                                                                                   aGATTATGTTATGAGAAAGTCAATTTGAATAAGACAATATTAAGAGCTAAAAAAATGACAAAAAACACTAAATCAAAAAATAATGGCATTAGAAAATATAATGCGAAAACGGAGGTGAAATTAGTTTATTTCAAATGAGGAAAATCTccc                <  1:585193/150‑1 (MQ=255)
                                                                                                                                   aGATGATTTGATTATAAATTAAATTTCAATAAGACAATATTAAGAGCTAAAAAAATGTCAAAAAACACAAAATAAAAAAATAATGGCATTAGAAAATATAATGCGAAAACGGAGGTGAAATTAGTTTATTTCAAATGAGGAAAATCTccc                <  1:585202/150‑1 (MQ=255)
                                                                                                                                       gatgtgatgAGAAAGTCAATTTGAATAAGACAATATTAAGAGCTAAAAAAATGTCAAAAAACACTAAATCAAAAAATAATGGCATTAGAAAATATAATGCGAAAACGGAGGTGAAATTAGTTTATTTCAAATGAGGAAAATCTCCCGGCg            >  1:1389022/1‑150 (MQ=255)
                                                                                                                                       gatgtgatgAGAAAATCAATTTGAATAAGACAATATTAAGAGCTAAAAAAATGTCAAAAAACACTAAATCAAAAAATAATGGCATTAGAAAATATAATGCGAAAACGGAGGTGAAATTAGTTTATTTCAAATGAGGAAAATCTCCCGGCg            >  2:3485149/1‑150 (MQ=255)
                                                                                                                                          gtgatgAGAAAGTCAATTTGAATAAGACAATATTAAGAGCTAAAAAAATGTCAAAAAACACTAAATCAAAAAATAATGGCATTAGAAAATATAATGCGAAAACGGAGGTGAAATTAGTTTATTTCAAATGAGGAAAATCTCCCGGCGaaa         >  2:4197201/1‑150 (MQ=255)
                                                                                                                                           tgatgaGAAAGTCAATTTGAATAAGACAATATTAAGAGCTAAAAAAATGTCAAAAAACACTAAATCAAAAAATAATGGCATTAGAAAATATAATGCGAAAACGGAGGTGAAATTAGTTTATTTCAAATGAGGAAAATCTCCCGGCGaaaa        >  1:2027197/1‑150 (MQ=255)
                                                                                                                                              tgaCAAAATAAATTTTAATAAGACAATATAAACAGCAAAAAAACTGACAAAAAACACTAAAACAAAAAATAATGCCATTAGAAAATATAATGCGAAAACGGAGGTGAAATTAGTTTATTTCAAATGAGGAAAATCTCCCGGCGAAAAAAc     <  1:839216/150‑1 (MQ=255)
                                                                                                                                                 gaAAATCAATTTGAATAAGACAATATTAAGAGCTAAAAAAATGTCAAAAAACACTAAATCAAAAAATAATGGCATTAGAAAATATAATGCGAAAACGGAGGTGAAATTAGTTTATTTCAAATGAGGAAAATCTCCCGGCGAAAAAACCgg  <  1:3367151/150‑1 (MQ=255)
                                                                                                                                                     |                                                                                                                                                 
TTTGCCTGAACTTACCACCGAAACAGACTGTTAACCATAAGGTAAAATTGATCATCACATTAGCTTATGGTTAAAAAATGCAAAAATCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAGTCAATTTGAATAAGACAATATTAAGAGCTAAAAAAATGTCAAAAAACACTAAATCAAAAAATAATGGCATTAGAAAATATAATGCGAAAACGGAGGTGAAATTAGTTTATTTCAAATGAGGAAAATCTCCCGGCGAAAAAACCGG  >  CP009273/3044132‑3044426

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A