Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F204 I0 R1 1155 255.8 8356456 95.7% 7997128 150.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP009273 3,044,281 G→A 34.6% intergenic (‑255/+193) gcvT ← / ← ubiI aminomethyltransferase, tetrahydrofolate‑dependent, subunit (T protein) of glycine cleavage complex/2‑octaprenylphenol hydroxylase, FAD‑dependent

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0092733,044,2810GA34.6% 366.8 / 302.8 288intergenic (‑255/+193)gcvT/ubiIaminomethyltransferase, tetrahydrofolate‑dependent, subunit (T protein) of glycine cleavage complex/2‑octaprenylphenol hydroxylase, FAD‑dependent
Reads supporting (aligned to +/- strand):  ref base G (107/79);  new base A (48/51);  total (155/133)
Fisher's exact test for biased strand distribution p-value = 1.70e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.56e-01

Only 100 of 288 total aligned reads displayed.

TTGCCTGAACTTACCACCGAAACAGACTGTTAACCATAAGGTAAAATTGATCATCACATTAGCTTATGGTTAAAAAATGCAAAAATCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAGTCAATTTGAATAAGACAATATTAAGAGCT‑AAAAAAATGTCAAAAAACACTAAATCAAAAAATAATGGCATTAGAAAATATAATGCGAAAACGGAGGTGAAATTAGTTTATTTCAAATGAGGAAAATCTCCCGGCGAAAAAACCGGGA  >  CP009273/3044133‑3044428
                                                                                                                                                    |                                                                                                                                                    
ttGCCTGAACTTACCACCGAAACAGACTGTTAACCATAAGGTAAAATTGATCATCACATTAGCTTATGGTTAAAAAATGCAAAAATCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAGt                                                                                                                                                     >  2:2039245/1‑150 (MQ=255)
     tGAACTTACCACCGAAACAGACTGTTAACCATAAGGTAAAATTGATCATCACATTAGCTTATGGTTAAAAAATGCAAAAATCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAATCAAtt                                                                                                                                                >  2:3993292/1‑150 (MQ=255)
     tGAACTTACCACCGAAACAGACTGTTAACCATAAGGTAAAATTGATCATCACATTAGCTTATGGTTAAAAAATGCAAAAATCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAATCAAtt                                                                                                                                                >  2:2569991/1‑150 (MQ=255)
          ttACCACCGAAACAGACTGTTAACCATAAGGTAAAATTGATCATCACATTAGCTTATGGTTAAAAAATGCAAAAATCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGATAAAGTCAATTTGAAt                                                                                                                                           >  1:1314865/1‑150 (MQ=255)
          ttACCACCGAAACAGACTGTTAACCATAAGGTAAAATTGATCATCACATTAGCTTATGGTTAAAAAATGCAAAAATCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAGTCAATTTGAAt                                                                                                                                           <  1:1011558/150‑1 (MQ=255)
          ttACCACCGAAACAGACTGTTAACCATAAGGTAAAATTGATCATCACATTAGCTTATGGTTAAAAAATGCAAAAATCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAGTCAATTTGAAt                                                                                                                                           <  2:4090340/150‑1 (MQ=255)
            accaccGAAACAGACTGTTAACCATAAGTTAAAATTGATCATCACATTAGCTTATGGTTAAAAAATGCAAAAATCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAGTCAATTTGAATaa                                                                                                                                         <  2:1699658/150‑1 (MQ=255)
            accaccGAAACAGACTGTTAACCATAAGGTAAAATTGATCATCACATTAGCTTATGGTTAAAAAATGCAAAAATCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAGTCAATTTGAATaa                                                                                                                                         >  2:1322319/1‑150 (MQ=255)
               accGAAACAGACTGTTAACCATAAGGTAAAATTGATCATCACATTAGCTTATGGTTAAAAAATGCAAAAATCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAGTCAATTTGAATAAGAc                                                                                                                                      <  1:3413553/150‑1 (MQ=255)
               accGAAACAGACTGTTAACCATAAGGTAAAATTGATCATCACATTAGCTTATGGTTAAAAAATGCAAAAATCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAATCAATTTGAATAAGAc                                                                                                                                      <  2:2680419/150‑1 (MQ=255)
                ccGAAACAGACTGTTAACCATAAGGTAAAATTGATCATCACATTAGCTTATGGTTAAAAAATGCAAAAATCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAGTCAATTTGAATAAGACa                                                                                                                                     <  1:639507/150‑1 (MQ=255)
                ccGAAACAGACTGTTAACCATAAGGTAAAATTGATCATCACATTAGCTTATGGTTAAAAAATGCAAAAATCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAATCAATTTGAATAAGACa                                                                                                                                     >  1:3061157/1‑150 (MQ=255)
                  gAAACAGACTGTTAACCATAAGGTAAAATTGATCATCACATTAGCTTATGGTTAAAAAATGCAAAAATCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAATCAATTTGAATAAGACAat                                                                                                                                   >  2:1795857/1‑150 (MQ=255)
                    aaCAGACTGTTAACCATAAGGTAAAATTGATCATCACATTAGCTTATGGTTAAAAAATGCAAAAATCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAGTCAATTTGAATAAGACAatat                                                                                                                                 <  1:1677089/150‑1 (MQ=255)
                     aCAGACTGTTAACCATAAGGTAAAATTGATCATCACATTAGCTTATGGTTAAAAAATGCAAAAATCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAGTCAATTTGAATAAGACAATAtt                                                                                                                                <  2:2384615/150‑1 (MQ=255)
                     aCAGACTGTTAACCATAAGGTAAAATTGATCATCACATTAGCTTATGGTTAAAAAATGCAAAAATCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAATCAATTTGAATAAGACAATAtt                                                                                                                                <  1:379885/150‑1 (MQ=255)
                      cAGACTGTTAACCATAAGGTAAAATTGATCATCACATTAGCTTATGGTTAAAAAATGCAAAAATCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAGTCAATTTGAATAAGACAATATTa                                                                                                                               >  1:1349492/1‑150 (MQ=255)
                      cAGACTGTTAACCATAAGGTAAAATTGATCATCACATTAGCTTATGGTTAAAAAATGCAAAAATCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAATCAATTTGAATAAGACAATATTa                                                                                                                               <  1:2921514/150‑1 (MQ=255)
                       aGACTGTTAACCATAAGGTAAAATTGATCATCACATTAGCTTATGGTTAAAAAATGCAAAAATCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAGTCAATTTGAATAAGACAATATTaa                                                                                                                              >  2:3666734/1‑150 (MQ=255)
                        gACTGTTAACCATAAGGTAAAATTGATCATCACATTAGCTTATGGTTAAAAAATGCAAAAATCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAATCAATTTGAATAAGACAATATTAag                                                                                                                             >  1:2869791/1‑150 (MQ=255)
                        gACTGTTAACCATAAGGTAAAATTGATCATCACATTAGCTTATGGTTAAAAAATGCAAAAATCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAATCAATTTGAATAAGACAATATTAag                                                                                                                             >  1:1788503/1‑150 (MQ=255)
                         aCTGTTAACCATAAGGTAAAATTGATCATCACATTAGCTTATGGTTAAAAAATGCAAAAATCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAATCAATTTGAATAAGACAATATTAaga                                                                                                                            <  1:1099234/150‑1 (MQ=255)
                            gTTAACCATAAGTTAAAATTGATCATCACATTAGCTTATGGTTAAAAAATGCAAAAATCTCGACAGAATAAAAAACCAAAAAATACACCAGTTTATATACAAAGATGATGTGATGAGAAAGTCAATTTGAATAAGACAATATTAAGAGCt                                                                                                                         <  2:3420403/150‑1 (MQ=255)
                            gTTAACCATAAGGTAAAATTGATCATCACATTAGCTTATGGTTAAAAAATGCAAAAATCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAATCAATTTGAATAAGACAATATTAAGAGCt                                                                                                                         <  1:51901/150‑1 (MQ=255)
                            gTTAACCATAAGGTAAAATTGATCATCACATTAGCTTATGGTTAAAAAATGCAAAAATCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAATCAATTTGAATAAGACAATATTAAGAGCt                                                                                                                         <  1:3658915/150‑1 (MQ=255)
                              tAACCATAAGGTAAAATTGATCATCACATTAGCTTATGGTTAAAAAATGCAAAAATCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAATCAATTTGAATAAGACAATATTAAGAGCT‑aa                                                                                                                      >  1:3190086/1‑150 (MQ=255)
                                 ccATAAGGTAAAATTGATCATCACATTAGCTTATGGTTAAAAAATGCAAAAATCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAGTCAATTTGAATAAGACAATATTAAGAGCT‑aaaaa                                                                                                                   <  1:3674162/150‑1 (MQ=255)
                                    tAAGGTAAAATTGATCATCACATTATCTTATGGTTAAAAAATGCAAAAATCGCTACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAGTCAATTTGAATAAGACAATATTAAGTGCT‑AAAAAAAt                                                                                                                <  2:2620787/150‑1 (MQ=255)
                                        gTAAAATTGATCATCACATTAGCTTATGGTTAAAAAATGCAAAAATCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAGTCAATTTGAATAAGACAATATTAAGAGCT‑AAAAAAATGTCa                                                                                                            <  1:724685/150‑1 (MQ=255)
                                        gTAAAATTGATCATCACATTAGCTTATGGTTAAAAAATGCAAAAATCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAATCAATTTGAATAAGACAATATTAAGAGCT‑AAAAAAATGTCa                                                                                                            <  1:1367902/150‑1 (MQ=255)
                                         tAAAATTGATCATCACATTAGCTTATGGTTAAAAAATGCAAAAATCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAGTCAATTTGAATAAGACAATATTAAGAGCT‑AAAAAAATGTCaa                                                                                                           <  2:1156293/150‑1 (MQ=255)
                                            aaTTGATCATCACATTAGCTTATGGTTAAAAAATGCAAAAATCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAATCAATTTGAATAAGACAATATTAAGAGCT‑AAAAAAATGTCaaaaa                                                                                                        <  2:1873822/150‑1 (MQ=255)
                                              tttaacatcaCATTAGCTTATGGTTAAAAAATGCAAAAATCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAGTCAATTTGAATAAGACAATATTAAGAGCT‑AAAAAAATGTCAAAAAac                                                                                                      <  2:1998187/145‑1 (MQ=255)
                                              ttGATCATCACATTAGCTTATGGTTAAAAAATGCAAAAATCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAGTCAATTTGAATAAGACAATATTAAGAGCT‑AAAAAAATGTCAAAAAac                                                                                                      <  1:1303825/150‑1 (MQ=255)
                                               tGATCATCACATTAGCTTATGGTTAAAAAATGCAAAAATCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAATCAATTTGAATAAGACAATATTAAGAGCT‑AAAAAAATGTCAAAAAaca                                                                                                     <  2:672940/150‑1 (MQ=255)
                                                 atcatcACATTAGCTTATGGTTAAAAAATGCAAAAATCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAGTCAATTTGAATAAGACAATATTAAGAGCT‑AAAAAAATGTCAAAAAACACt                                                                                                   >  1:3229116/1‑150 (MQ=255)
                                                     tcaCATTAGCTTATGGTTAAAAAATGCAAAAATCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAGTCAATTTGAATAAGACAATATTAAGAGCT‑AAAAAAATGTCAAAAAACACTAAAt                                                                                               >  1:3346359/1‑150 (MQ=255)
                                                          ttAGCTTATGGTTAAAAAATGCAAAAATCGCGACAGAAAAAAAAAACAAAAAATACACCATTATCTATACAAAGAAGATGTGATGAGAAAATCAATATGAATAATACAATATTAATAGAT‑AAAAAAAAGTCAAAAAACACTAAATCaaaa                                                                                          >  1:392506/1‑150 (MQ=255)
                                                               ttATGGTTAAAAAATGCAAAAATCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAATCAATTTGAATAAGACAATATTAAGAGCT‑AAAAAAATGTCAAAAAACACTAAATCAAAAaataa                                                                                     >  1:1835054/1‑150 (MQ=255)
                                                                 aTGGTTAAAAAATGCAAAAATCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTATATACAAAGATGATGTGATGAGAAAGTCAATTTGAATAAGACAATATTAAGAGCT‑AAAAAAATGTCAAAAAACACTAAATCAAAAAATAATg                                                                                   <  2:3534409/150‑1 (MQ=255)
                                                                  tGGTTAAAAAATGCAAAAATCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAGTCAATTTGAATAAGACAATATTAAGAGCT‑AAAAAAATGTCAAAAAACACTAAATCAAAAAATAATgg                                                                                  >  2:2651758/1‑150 (MQ=255)
                                                                  tGGTTAAAAAATGCAAAAATCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAATCAATTTGAATAAGACAATATTAAGAGCT‑AAAAAAATGTCAAAAAACACTAAATCAAAAAATAATgg                                                                                  >  1:147098/1‑150 (MQ=255)
                                                                   ggTTAAAAAATGCAAAAATCGAGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAGTCAATTTGAATAAGACAATATTAAGAGCT‑AAAAAAATGTCAAAAAACACTAAATCAAAAAATAATGGc                                                                                 <  2:482420/150‑1 (MQ=255)
                                                                    gTTAAAAAATGCAAAAATCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAGTCAATTTGAATAAGACAATATTAAGAGCTAAAAAAAATGTCAAAAAACACTAAATCAAAAAATAATGGc                                                                                 >  2:915036/1‑150 (MQ=255)
                                                                    gTTAAAAAATGCAAAAATCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAGTCAATTTGAATAAGACAATATTAAGAGCT‑AAAAAAATGTCAAAAAACACTAAATCAAAAAATAATGGCa                                                                                <  1:1519403/150‑1 (MQ=255)
                                                                     ttAAAAAATGCAAAAATCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAGTCAATTTGAATAAGACAATATTAAGAGCT‑AAAAAAATGTCAAAAAACACTAAATCAAAAAATAATGGCAt                                                                               <  2:3979417/150‑1 (MQ=255)
                                                                     ttAAAAAATGCAAAAATCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAATCAATTTGAATAAGACAATATTAAGAGCT‑AAAAAAATGTCAAAAAACACTAAATCAAAAAATAATGGCAt                                                                               <  2:38820/150‑1 (MQ=255)
                                                                       aaaaaaTGCAAAAATCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAGTCAATTTGAATAAGACAATATTAAGAGCT‑AAAAAAATGTCAAAAAACACTAAATCAAAAAATAATGGCATTa                                                                             <  1:2654306/150‑1 (MQ=255)
                                                                           aaTGCAAAAATCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAGTCAATTTGAATAAGACAATATTAAGAGCT‑AAAAAAATGTCAAAAAACACTAAATCAAAAAATAATGGCATTAGaaa                                                                         <  1:2579776/150‑1 (MQ=255)
                                                                           aaTGCAAAAATCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAGTCAATTTGAATAAGACAATATTAAGAGCT‑AAAAAAATGTCAAAAAACACTAAATCAAAAAATAATGGCATTAGaaa                                                                         <  1:1179379/150‑1 (MQ=255)
                                                                            aTGCAAAAATCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAGTCAATTTGAATAAGACAATATTAAGAGCT‑AAAAAAATGTCAAAAAACACTAAATCAAAAAATAATGGCATTAGaaaa                                                                        >  2:2777132/1‑150 (MQ=255)
                                                                            aTGCAAAAATCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAATCAATTTGAATAAGACAATATTAAGAGCT‑AAAAAAATGTCAAAAAACACTAAATCAAAAAATAATGGCATTAGaaaa                                                                        >  2:3600223/1‑150 (MQ=255)
                                                                             tGCAAAAATCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAGTCAATTTGAATAAGACAATATTAAGAGCT‑AAAAAAATGTCAAAAAACACTAAATCAAAAAATAATGGCATTAGAAAat                                                                       >  1:2565848/1‑150 (MQ=255)
                                                                             tGCAAAAATCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAATCAATTTGAATAAGACAATATTAAGAGCT‑AAAAAAATGTCAAAAAACACTAAATCAAAAAATAATGGCATTAGAAAat                                                                       >  1:2033717/1‑150 (MQ=255)
                                                                              gCAAAAATCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAATCAATTTGAATAAGACAATATTAAGAGCT‑AAAAAAATGTCAAAAAACACTAAATCAAAAAATAATGGCATTAGAAAata                                                                      >  2:3894139/1‑150 (MQ=255)
                                                                                 aaaaTCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAGTCAATTTGAATAAGACAATATTAAGAGCT‑AAAAAAATGTCAAAAAACACTAAATCAAAAAATAATGGCATTAGAAAATATaa                                                                   <  1:2325900/150‑1 (MQ=255)
                                                                                       gctaCAGAATAAAAAACCAAAAAATACACCATTTTCTATACAAATATGATGTGATGAGAAAATCAATTTGAATAAGACAATATTAAGAGCT‑AAAAAAATGTCAAAAAACACTAAATCAAAAAATAATGGCATTAGAAAATATAATGCGaa                                                             <  2:2182782/147‑1 (MQ=255)
                                                                                        cgACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAATCAATTTGAATAAGACAATATTAAGAGCT‑AAAAAAATGTCAAAAAACACTAAATCAAAAAATAATGGCATTAGAAAATATAATGCGaaa                                                            <  2:146783/150‑1 (MQ=255)
                                                                                           cAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGGTGATGTGATGAGAAAGTCAATTTGAATAAGACAATATTAAGAGCT‑AAAAAAATGTCAAAAAACACTAAATCAAAAAATAATGGCATTAGAAAATATAATGCGAAAACg                                                         <  2:311451/150‑1 (MQ=255)
                                                                                            aGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAGTCAATTTGAATAAGACAATATTAAGAGCT‑AAAAAAATGTCAAAAAACACTAAATCAAAAAATAATGGCATTAGAAAATATAATGCGAAAACgg                                                        <  2:3786966/150‑1 (MQ=255)
                                                                                            aGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAATCAATTTGAATAAGACAATATTAAGAGCT‑AAAAAAATGTCAAAAAACACTAAATCAAAAAATAATGGCATTAGAAAATATAATGCGAAAACgg                                                        <  1:3328258/150‑1 (MQ=255)
                                                                                              aaTAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAGTCAATTTGAATAAGACAATATTAAGAGCT‑AAAAAAATGTCAAAAAACACTAAATCAAAAAATAATGGCATTAGAAAATATAATGCGAAAACGGAg                                                      >  1:4084253/1‑150 (MQ=255)
                                                                                               aTAAAAAACCAAAACATACCCCAGTTTCTATACAAATATTCTGTGATGAGAAAATCACTTTGTATAAGACAATATTAAGAGCT‑ATAAAAATTTCAAAAAACACTAAATCAAAAACTAATGTCATTAGAAAATATAATGCGAAAACGGAgg                                                     <  2:526558/150‑1 (MQ=255)
                                                                                               aTAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAGTCAATTTGAATAAGACAATATTAAGAGCT‑AAAAAAATGTCAAAAAACACTAAATCAAAAAATAATGGCATTAGAAAATATAATGCGAAAACGGAgg                                                     <  2:1511288/150‑1 (MQ=255)
                                                                                                  aaaaaCCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAGTCAATTTGAATAAGACAATATTAAGAGCT‑AAAAAAATGTCAAAAAACACTAAATCAAAAAATAATGGCATTAGAAAATATAATGCGAAAACGGAGGTGa                                                  >  1:3110520/1‑150 (MQ=255)
                                                                                                  aaaaaCCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAATCAATTTGAATAAGACAATATTAAGAGCT‑AAAAAAATGTCAAAAAACACTAAATCAAAAAATAATGGCATTAGAAAATATAATGCGAAAACGGAGGTGa                                                  >  1:4127805/1‑150 (MQ=255)
                                                                                                  aaaaaCCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAATCAATTTGAATAAGACAATATTAAGAGCT‑AAAAAAATGTCAAAAAACACTAAATCAAAAAATAATGGCATTAGAAAATATAATGCGAAAACGGAGGTGa                                                  <  2:2922688/150‑1 (MQ=255)
                                                                                                     aaCCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAGTCAATTTGAATAAGACAATATTAAGAGCT‑AAAAAAATGTCAAAAAACACTAAATCAAAAAATAATGGCATTAGAAAATATAATGCGAAAACGGAGGTGAAAt                                               >  1:2445302/1‑150 (MQ=255)
                                                                                                     aaCCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAGTCAATTTGAATAAGACAATATTAAGAGCT‑AAAAAAATGTCAAAAAACACTAAATCAAAAAATAATGGCATTAGAAAATATAATGCGAAAACGGAGGTGAAAt                                               <  2:3384280/150‑1 (MQ=255)
                                                                                                     aaCCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAGTCAATTTGAATAAGACAATATTAAGAGCT‑AAAAAAATGTCAAAAAACACTAAATCAAAAAATAATGGCATTAGAAAATATAATGCGAAAACGGAGGTGAAAt                                               >  1:2166705/1‑150 (MQ=255)
                                                                                                      aCCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAATCAATTTGAATAAGACAATATTAAGAGCT‑AAAAAAATGTCAAAAAACACTAAATCAAAAAATAATGGCATTAGAAAATATAATGCGAAAACGGAGGTGAAAtt                                              >  1:2401162/1‑150 (MQ=255)
                                                                                                         aaaaaaTACACCAGTTTCTATACAAAGATGATGTGATGAGAAAATCAATTTGAATAAGACAATATTAAGAGCT‑AAAAAAATGTCAAAAAACACTAAATCAAAAAATAATGGCATTAGAAAATATAATGCGAAAACGGAGGTGAAATTAGt                                           >  1:3532833/1‑150 (MQ=255)
                                                                                                          aaaaaTACACCAGTTTCTATACAAAGATGATGTGATGAGAAAGTCAATTTGAATAAGACAATATTAAGAGCT‑AAAAAAATGTCAAAAAACACTAAATCAAAAAATAATGGCATTAGAAAATATAATGCGAAAACGGAGGTGAAATTAGtt                                          >  1:3341234/1‑150 (MQ=255)
                                                                                                             aaTACCCCAGTTTCTATACAAATATGATGTGATGAGAAAATAAATTTTAATAAGACAATATTAAGAGCT‑AAAAAAATGTCAAAAAACACTAAATCAAAAAATAATGGCATTAGAAAATATAATGCGAAAACGGAGGTGAAATTAGTTTAt                                       <  1:3278815/150‑1 (MQ=255)
                                                                                                             aaTACACCAGTTTCTATACAAAGATGATGTGATGAGAAAGTCAATTTGAATAAGACAATATTAAGAGCT‑AAAAAAATGTCAAAAAACACTAAATCAAAAAATAATGGCATTAGAAAATATAATGCGAAAACGGAGGTGAAATTAGTTTAt                                       >  1:882285/1‑150 (MQ=255)
                                                                                                              aTACACCAGTTTCTATACAAAGATGATGTGATGAGAAAGTCAATTTGAATAAGACAATATTAAGAGCT‑AAAAAAATGTCAAAAAACACTAAATCAAAAAATAATGGCATTAGAAAATATAATGCGAAAACGGAGGTGAAATTAGTTTAtt                                      >  1:3373255/1‑150 (MQ=255)
                                                                                                                  acCAGTTTCTATACAAAGATGATGTGATGAGAAAGTCAATTTGAATAAGACAATATTAAGAGCT‑AAAAAAATGTCAAAAAACACTAAATCAAAAAATAATGGCATTAGAAAATATAATGCGAAAACGGAGGTGAAATTAGTTTATTTCaa                                  >  2:3232797/1‑150 (MQ=255)
                                                                                                                    cAGTTTCTATACAAAGATGATGTGATGAGAAAGTCAATTTGAATAAGACAATATTAAGAGCT‑AAAAAAATGTCAAAAAACACTAAATCAAAAAATAATGGCATTAGAAAATATAATGCGAAAACGGAGGTGAAATTAGTTTATTTCAAAt                                <  1:2764065/150‑1 (MQ=255)
                                                                                                                    cAGTTTCTATACAAAGATGATGTGATGAGAAAATCAATTTGAATAAGACAATATTAAGAGCT‑AAAAAAATGTCAAAAAACACTAAATCAAAAAATAATGGCATTAGAAAATATAATGCGAAAACGGAGGTGAAATTAGTTTATTTCAAAt                                <  2:1482275/150‑1 (MQ=255)
                                                                                                                     aGTTTCTATACAAAGATGATGTGATGAGAAAGTCAATTTGAATAAGACAATATTAAGAGCT‑AAAAAAATGTCAAAAAACACTAAATCAAAAAATAATGGCATTAGAAAATATAATGCGAAAACGGAGGTGAAATTAGTTTATTTCAAATg                               >  2:247193/1‑150 (MQ=255)
                                                                                                                      gTTTCTATACAAAGATGATGTGATGAGAAAATCAATTTGAATAAGACAATATTAAGAGCT‑AAAAAAATGTCAAAAAACACTAAATCAAAAAATAATGGCATTAGAAAATATAATGCGAAAACGGAGGTGAAATTAGTTTATTTCAAATGa                              <  1:4065590/150‑1 (MQ=255)
                                                                                                                          cTATACAAAGATGATGTGATGAGAAAGTCAATTTGAATAAGTCAATATTAAGAGCT‑AAAAAAATGTCAAAAAACACTAAATCAAAAAATAATGGCATTAGAAAATATAATGCGAAAACGGAGGTGAAATTAGTTTATTTCAAATGAGGaa                          >  1:2756801/1‑150 (MQ=255)
                                                                                                                          cTATACAAAGATGATGTGATGAGAAAATCAATTTGAATAAGACAATATTAAGACCT‑AAAAAAATGTCAAAAAACACTAAATCAAAAAATAATGGCATTAGAAAATATAATGCGAAAACGGAGGTGAAATTAGTTTATTTCAAATGAGGaa                          <  1:752384/150‑1 (MQ=255)
                                                                                                                           tataCAAAGATGATGTGATGAGAAAATCAATTTGAATAAGACAATATTAAGAGCT‑AAAAAAATGTCAAAAAACACTAAATCAAAAAATAATGGCATTAGAAAATATAATGCGAAAACGGAGGTGAAATTAGTTTATTTCAAATGAGGaaa                         <  2:1287999/150‑1 (MQ=255)
                                                                                                                            ataCAAAGATGATGTGATGAGAAAGTCAATTTGAATAAGACAATATTAAGAGCT‑AAAAAAATGTCAAAAAACACTAAATCAAAAAATAATGGCATTAGAAAATATAATGCGAAAACGGAGGTGAAATTAGTTTATTTCAAATGAGGaaaa                        >  1:2108466/1‑150 (MQ=255)
                                                                                                                            ataCAAAGATGATGTGATGAGAAAGTCAATTTGAATAAGACAATATTAAGAGCT‑AAAAAAATGTCAAAAAACACTAAATCAAAAAATAATGGCATTAGAAAATATAATGCGAAAACGGAGGTGAAATTAGTTTATTTCAAATGAGGaaaa                        <  2:2297801/150‑1 (MQ=255)
                                                                                                                               cAAAGATGATGTGATGAGAAAGTCAATTTGAATAAGACAATATTAAGAGCT‑AAAAAAATGTCAAAAAACACTAAATCAAAAAATAATGGCATTAGAAAATATAATGCGAAAACGGAGGTGAAATTAGTTTATTTCAAATGAGGAAAAtct                     >  2:2265839/1‑150 (MQ=255)
                                                                                                                               cAAAGATGATGTGATGAGAAAGTCAATTTGAATAAGACAATATTAAGAGCT‑AAAAAAATGTCAAAAAACACTAAATCAAAAAATAATGGCATTAGAAAATATAATGCGAAAACGGAGGTGAAATTAGTTTATTTCAAATGAGGAAAAtct                     <  2:2146955/150‑1 (MQ=255)
                                                                                                                                aaaGATGATGTGATGAGAAAGTCAATTTGAATAAGACAATATTAAGAGCT‑AAAAAAATGTCAAAAAACACTAAATCAAAAAATAATGGCATTAGAAAATATAATGCGAAAACGGAGGTGAAATTAGTTTATTTCAAATGAGGAAAAtctc                    >  2:2794053/1‑150 (MQ=255)
                                                                                                                                aaaGATGATGTGATGAGAAAGTCAATTTGAATAAGACAATATTAAGAGCT‑AAAAAAATGTCAAAAAACACTAAATCAAAAAATAATGGCATTAGAAAATATAATGCGAAAACGGAGGTGAAATTAGTTTATTTCAAATGAGGAAAAtctc                    >  2:3312181/1‑150 (MQ=255)
                                                                                                                                 aaGATGATGTGATGAGAAAATCAATTTGAATAAGACAATATTAAGAGCT‑AAAAAAATGTCAAAAAACACTAAATCAAAAAATAATGGCATTAGAAAATATAATGCGAAAACGGAGGTGAAATTAGTTTATTTCAAATGAGGAAAATCTcc                   >  1:4078623/1‑150 (MQ=255)
                                                                                                                                   gatgatGTGATTAGAAAGTAAATTTGAATAAGACAATATTAAGAGCT‑AAAAAAATGTCAAAAAACACTAAATCAAAAAATAATGGCATTAGAAAATATAATGCGAAAACGGAGGTGAAATTAGTTTATTTCAAATGAGGAAAATCTCCCg                 <  1:382340/150‑1 (MQ=255)
                                                                                                                                   gatgatGTGATGATAAAATCAATTTGAATAATACAATATTAAGAGCT‑AAAAAAATGTCAAAAAACACTAAATCAAAAAATAATGGCATTAGAAAATATAATGCGAAAACGGAGGTGAAATTAGTTTATTTCAAATGAGGAAAATCTCCCg                 <  1:387146/150‑1 (MQ=255)
                                                                                                                                   gatgatGTGATGAGAAAGTCAATTTGAATAAGACAATATTAAGAGCT‑AAAAAAATGTCAAAAAACACTAAATCAAAAAATAATGGCATTAGAAAATATAATGCGAAAACGGAGGTGAAATTAGTTTATTTCAAATGAGGAAAATCTCCCg                 >  1:2290400/1‑150 (MQ=255)
                                                                                                                                   gatgatGTGATGAGAAAGTCAATTTGAATAAGACAATATTAAGAGCT‑AAAAAAATGTCAAAAAACACTAAATCAAAAAATAATGGCATTAGAAAATATAATGCGAAAACGGAGGTGAAATTAGTTTATTTCAAATGAGGAAAATCTCCCg                 <  2:601641/150‑1 (MQ=255)
                                                                                                                                       atgtgatgAGAAAGTAAATTTGAATAAGACAATATTAAGAGCT‑AAAAAAATGTCAAAAAACACTAAATCAAAAAATAATGGCATGAGAAAATATAATGCGAAAACGGAGGTGAAATTAGTTTATTTCAAATGAGGAAAATCTCCCGGCGa             <  2:1984977/150‑1 (MQ=255)
                                                                                                                                           gatgaGAAAGTCAATTTGAATAAGACAATATTAAGAGCT‑AAAAAAATGTCAAAAAACACTAAATCAAAAAATAATGGCATTAGAAAATATAATGCGAAAACGGAGGTGAAATTAGTTTATTTCAAATGAGGAAAATCTCCCGGCGaaaaa         <  1:1322319/150‑1 (MQ=255)
                                                                                                                                           gatgaGAAAGTCAATTTGAATAAGAAAATATTAAGAGCT‑AAAAAAATGTCAAAAAACACTAAATCAAAAAATAATGGCATTAGAAAATATAATGCGAAAACGGAGGTGAAATTAGTTTATTTCAAATGAGGAAAATCTCCCGGCGaaaaa         <  1:832033/150‑1 (MQ=255)
                                                                                                                                              gagaAAGTCAATTTGAATAAGACAATATTAAGAGCT‑AAAAAAATGTCAAAAAACACTAAATCAAAAAATAATGGCATTAGAAAATATAATGCGAAAACGGAGGTGAAATTAGTTTATTTCAAATTAGGAAAATCTCCCGGCGAAAAAAcc      >  1:2474522/1‑150 (MQ=255)
                                                                                                                                                  aaGTCAATTTGAATAAGACAATATTAAGAGCT‑AAAAAAATGTCAAAAAACACTAAATCAAAAAATAATGGCATTAGAAAATATAATGCGAAAACGGAGGTGAAATTAGTTTATTTCAAATGAGGAAAATCTCCCGGCGAAAAAACCGGga  <  2:703337/150‑1 (MQ=255)
                                                                                                                                                    |                                                                                                                                                    
TTGCCTGAACTTACCACCGAAACAGACTGTTAACCATAAGGTAAAATTGATCATCACATTAGCTTATGGTTAAAAAATGCAAAAATCGCGACAGAATAAAAAACCAAAAAATACACCAGTTTCTATACAAAGATGATGTGATGAGAAAGTCAATTTGAATAAGACAATATTAAGAGCT‑AAAAAAATGTCAAAAAACACTAAATCAAAAAATAATGGCATTAGAAAATATAATGCGAAAACGGAGGTGAAATTAGTTTATTTCAAATGAGGAAAATCTCCCGGCGAAAAAACCGGGA  >  CP009273/3044133‑3044428

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A