Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F5 I0 R1 92 232.7 8849178 85.5% 7566047 149.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP009273 2,170,707 C→A 22.0% intergenic (‑24/+284) gatY ← / ← fbaB D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit/fructose‑bisphosphate aldolase class I

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0092732,170,7070CA22.0% 361.8 / 12.0 174intergenic (‑24/+284)gatY/fbaBD‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit/fructose‑bisphosphate aldolase class I
Reads supporting (aligned to +/- strand):  ref base C (18/96);  new base A (37/2);  total (76/98)
Fisher's exact test for biased strand distribution p-value = 1.79e-19
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 175 total aligned reads displayed.

TGCAGGTTGGCAGCGGTTTCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAAT‑AT‑AATGAAATTATTTGTTTTTAAATATCGAGATAACGATCAC‑AAAAACGACAATATGAAAATTATTCGAGGAGT‑GAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTT  >  CP009273/2170559‑2170847
                                                                                                                                                    |                                                                                                                                                
tGCAGGTTGGCAGCGGTTTCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTc                                                                                                                                                  <  2:2086413/149‑1 (MQ=255)
 gCAGGTTGGCAGCGGTTTCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCg                                                                                                                                                 <  2:4286022/149‑1 (MQ=255)
  cAGGTTGGCAGCGGTTTCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGa                                                                                                                                                <  2:1986093/149‑1 (MQ=255)
   aGGTTGGCAGCGGTTTCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGAt                                                                                                                                               <  2:4259412/149‑1 (MQ=255)
   aGGTTGGCAGCGGTTTCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGAt                                                                                                                                               <  1:3916162/149‑1 (MQ=255)
   aGGTTGGCAGCGGTTTCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGAt                                                                                                                                               <  1:3914638/149‑1 (MQ=255)
   aGGTTGGCAGCGGTTTCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTAGAt                                                                                                                                               >  2:1653897/1‑149 (MQ=255)
    ggTTGGCAGCGGTTTCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGAtt                                                                                                                                              <  1:2917717/149‑1 (MQ=255)
    ggTTGGCAGCGGTTTCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGAtt                                                                                                                                              <  1:844511/149‑1 (MQ=255)
     gTTGGCAGCGGTTTCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGAttt                                                                                                                                             <  1:680174/149‑1 (MQ=255)
     gTTGGCAGCGGTTTCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGAttt                                                                                                                                             <  1:2881036/149‑1 (MQ=255)
     gTTGGCAGCGGTTTCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACAGTTTCATATCCTGTCGTGTGTGTTGGAttt                                                                                                                                             >  1:2415618/1‑149 (MQ=255)
          cAGCGGTTTCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCaaaa                                                                                                                                        <  2:163367/149‑1 (MQ=255)
          cAGCGGTTTCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCaaaa                                                                                                                                        <  1:3814247/149‑1 (MQ=255)
            gCGGTTTCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAat‑a                                                                                                                                     <  2:2126736/149‑1 (MQ=255)
            gCGGTTTCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTTTTTTAGATTTAAAAat‑a                                                                                                                                     >  2:151059/1‑149 (MQ=255)
                tttCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAAT‑AT‑AAt                                                                                                                                <  2:1915875/149‑1 (MQ=255)
                   cTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAAT‑AT‑AATGaa                                                                                                                             <  2:1795577/149‑1 (MQ=255)
                   cTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAAT‑AT‑AATGaa                                                                                                                             <  1:3624646/149‑1 (MQ=255)
                     accaccACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAAT‑AT‑AATGAAat                                                                                                                           <  2:3970511/149‑1 (MQ=255)
                       caccacTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTAGTTTTCAAAAT‑AT‑aattaaatta                                                                                                                         >  2:1433196/1‑149 (MQ=255)
                        accacTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAAT‑AT‑AATGAAattat                                                                                                                        <  2:3445946/149‑1 (MQ=255)
                         ccacTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTGGATTTAAAAAT‑AT‑aattaaattaat                                                                                                                       >  1:3812195/1‑147 (MQ=255)
                         ccacTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAAT‑AT‑AATGAAattatt                                                                                                                       <  2:1111951/149‑1 (MQ=255)
                         ccacTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAAT‑AT‑AATGAAattatt                                                                                                                       <  2:2185493/149‑1 (MQ=255)
                          cacTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAAT‑AT‑AATGAAATTAttt                                                                                                                      <  1:861271/149‑1 (MQ=255)
                          cacTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAAT‑AT‑AATGAAATTAttt                                                                                                                      <  1:2777416/149‑1 (MQ=255)
                          cacTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAAT‑AT‑AATGAAATTAttt                                                                                                                      <  2:2496962/149‑1 (MQ=255)
                          cacTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAAT‑AT‑AATGAAATTAttt                                                                                                                      <  1:52481/149‑1 (MQ=255)
                           acTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAAT‑AT‑AATGAAATTATTTg                                                                                                                     <  2:1889857/149‑1 (MQ=255)
                            cTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTAGATTTAAAAAT‑AA‑AAATAAATTAttttt                                                                                                                    >  2:3729134/1‑147 (MQ=255)
                            cTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTGTTTTAGATTTAAAAAA‑AT‑AATTAAAATAttttt                                                                                                                    >  2:3729156/1‑147 (MQ=255)
                             gtGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAAT‑AT‑AATGAAATTATTTGtt                                                                                                                   <  2:3113150/148‑1 (MQ=255)
                               gCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAAT‑AT‑AATGAAATTATTTGtttt                                                                                                                 <  2:1288096/149‑1 (MQ=255)
                                cATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAAT‑AT‑AATGAAATTATTTGttttt                                                                                                                <  2:1520408/149‑1 (MQ=255)
                                 aTCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAAT‑AT‑AATGAAATTATTTGTTTTTa                                                                                                               <  1:3631334/149‑1 (MQ=255)
                                 aTCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAAT‑AT‑AATGAAATTATTTGTTTTTa                                                                                                               <  1:3632154/149‑1 (MQ=255)
                                  tCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTTTTTTTGATTTAAAAAT‑AT‑AATTAAAtttttttttttttt                                                                                                              >  1:2770285/1‑147 (MQ=255)
                                  tCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTAGAATTAAAAAA‑AT‑AAATAAAATATTTTTTTTTaa                                                                                                              >  1:1321112/1‑149 (MQ=255)
                                    gTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAAT‑AT‑AATGAAATTATTTGTTTTTAAat                                                                                                            <  1:1703439/149‑1 (MQ=255)
                                    gTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTAGATTTCAAAAA‑AT‑AATGAAATTATTTTTTTTTAAat                                                                                                            >  2:4207362/1‑149 (MQ=255)
                                     tttCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAAT‑AT‑AATGAAATTATTTGTTTTTAAata                                                                                                           <  1:995618/149‑1 (MQ=255)
                                     tttCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAAT‑AT‑AATGAAATTATTTGTTTTTAAata                                                                                                           <  1:3311981/149‑1 (MQ=255)
                                     tttCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAAT‑AT‑AATGAAATTATTTGTTTTTAAata                                                                                                           <  1:3311312/149‑1 (MQ=255)
                                     tttCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTTTTTTTGATTTAAAAAA‑AA‑AATTAAAATATtttttttttattt                                                                                                           >  1:1154199/1‑144 (MQ=255)
                                       tCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAAT‑AT‑AATGAAATTATTTGTTTTTAAATATc                                                                                                         <  1:2381786/149‑1 (MQ=255)
                                         gagaTTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTGTTTTAGATTTCAAAAT‑AA‑AATGTAAATAATTTTTTTTAAATATCga                                                                                                       >  1:2130093/1‑149 (MQ=255)
                                          agaTTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTGTTTTAGATTTAAAAAA‑AA‑AAATAAATTATTTGTTTTTAAATATagag                                                                                                      >  2:1340175/1‑149 (MQ=255)
                                          agaTTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACAGTTTCATATCCTGTCGTGTGTTTTAGTTTTAAAAAA‑AT‑AATGAAATTATTTTTTTTTAAATATagag                                                                                                      >  1:651762/1‑149 (MQ=255)
                                            aTTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTTTTTTGGATTTAAAAAA‑AA‑AAAGAAAATAATTTTTTTTTAATATAgatgt                                                                                                    >  2:536784/1‑146 (MQ=255)
                                             ttGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTGTTTTATATTTAAAAAT‑AA‑AAATAAAATATTTTTTTTTTAATATAGAGATa                                                                                                   >  2:28695/1‑149 (MQ=255)
                                                 gAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTGTTTTTGTTTTGAAAAT‑AT‑AATTAAATTATTTTTTTTTTAATATAGAGATAACGa                                                                                               >  1:3126775/1‑149 (MQ=255)
                                                  aaTATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTAGATTTCAAAAT‑AT‑AATGAAATTATTTGTTTTTAAATATCGAGATAACGAt                                                                                              >  2:3241470/1‑149 (MQ=255)
                                                   atatTGACTGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAAT‑AT‑AATGAAATTATTTGTTTTTAAATATCGAGATAACGATc                                                                                             <  2:3894727/149‑1 (MQ=255)
                                                   atatTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAAT‑AT‑AATTAAATTATTTTTTTTTAAATATAGAGATAACGATc                                                                                             >  2:1704330/1‑149 (MQ=255)
                                                   atatTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTGTTTTCGATTTCAAAAT‑AT‑AATGAAATTATTTTTTTTTTAATATAGAGATAAAGAta                                                                                             >  2:1070283/1‑148 (MQ=255)
                                                        gAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTGTTTTGGGTTTTAAAATAAA‑AATGAAA‑AATTTTTTTTTTAATAAAGAGATAAAGATaaa‑aaa                                                                                       >  1:2705798/1‑149 (MQ=255)
                                                         aaTGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTGGTTTAGATTTCAAAAT‑AA‑AATGTAATTAATTTTTTTTTAATATAGAGCTAACGATCAC‑aaaa                                                                                      >  2:3387555/1‑149 (MQ=255)
                                                             ccGTAACCTCATAACCGCCGCGCTGTGCGTTGTTCAGAATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCTATTTAAAAAT‑AT‑AATGAAATTATTTGTTTTTAAATATCGAGATAACGATCAC‑AAAAACGa                                                                                  <  1:1624100/149‑1 (MQ=255)
                                                              cgtaaCCGAATAACCGCCGCGGGGTGCGTTTTTCAGAATCTGCTTTGTCGATACCACGTAATTTTTAATATCCTGTCGTTTGTTTTCTTTTTAAAAAT‑AT‑AATTAATTTTTTTTTTTTTAAATATCGAGATAACGATCAC‑AAACACGAc                                                                                 <  1:4195801/146‑1 (MQ=255)
                                                                gAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTGTGTTGGTTTTAAAAAT‑AT‑AAAGAAATTATATTTTTTTTAATATATATATAAAGATAAC‑aaaaaacaaca                                                                               >  1:2738843/1‑143 (MQ=255)
                                                                gAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGGGTGTTAGATTTGAAAAT‑AT‑AATGTAATTATTTTTTTTTTAATATGGTGATAACGTTGAC‑AAAAACGACaa                                                                               >  1:3479040/1‑149 (MQ=255)
                                                                gAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGGGGTTTGGGGTTAAAAAA‑AA‑AATTTAATTATTTTTTTTTTAATTACGTGAGAACCAAAAC‑CAAAAcaacaa                                                                               >  1:2738855/1‑149 (MQ=255)
                                                                        tAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTGGTCGATACCACGTACATTTTCATTTCCTGTCGTTTGTTTTCGATTTCAAAAT‑AT‑AATGAAATTATTTGTTTTTAAATATCGAGATAACGATCAC‑AAAAACGACAATATGaaaa                                                                       <  2:2917011/149‑1 (MQ=255)
                                                                              ccgcGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGGGTTTTTGTTTTGAAAAA‑ATAAATAAAATAATTTTTTTTTAAA‑ATATAGATAAATATAAA‑AAAAAAAAAAAAAAGAAAaatatta                                                                 >  1:3923725/1‑148 (MQ=255)
                                                                               cgcgCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTTTTTTAGATTTAAAAAT‑AT‑AATGAAATTATTTTTTTTTAAATATCGAGATAAAGATAAC‑AAAAAAGAAAATATGAAAattattag                                                                >  2:1074007/1‑147 (MQ=255)
                                                                                gcgcTGTGCGTTGTTCAGCATCTGCTTTGTCGATCCCCCGTACTTTTTCCTATCCTGTCTTTTGTTTTCGATTTAAAAAT‑AT‑ATTGAATTTATTTTTTTTTAAATATCTAGATAACTAACAC‑AAAAACGACAATATGAAAATTATTCga                                                               <  1:2055130/149‑1 (MQ=255)
                                                                                  gcTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTGTTTTGGTTTTCAAAAT‑AT‑AATGAAATTATTTTTTTTTTAATATCGTGATAACGATAAC‑AAAAACGACAAAAGTAAAAGTATTAgagg                                                             >  2:4314238/1‑149 (MQ=255)
                                                                                            gttCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTTGATTTAAAAAA‑AA‑AAAATAAAAAATTTTTTTTTTATAAATAGATAAAAAAAAC‑AAAAAAAACAAAATAAAAATAATTAAAGGAGT‑ggtattc                                                  >  1:2774574/1‑143 (MQ=255)
                                                                                            gtacAGCATAGGATTTGTCGACACCCCTAAATTTTTAATATCGGGTGGTTTGTTTTCTATTAAAAAAT‑AA‑AATGAAATTTTTTGTTTTTAAATAGCGATATAACGAAAAA‑AAACACGACAATATGAAAATTATTCGAGGAGT‑GAAAGGc                                                  <  1:479899/146‑1 (MQ=255)
                                                                                                   atcttttttGTCGATACCAATTAATTTTTCATATCCTGTGTTTTTTTTTCTATTAAAAAAT‑AT‑AATTAAATTTTTTTTTTTTAAATATCGATATAACTAACAC‑AAAAACGACAATATGAAAATTATTCGAGGAGT‑GAAAGGCaaaaaaa                                           <  1:1135069/143‑1 (MQ=255)
                                                                                                    tCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTGGATTTGAAAAT‑AT‑AATTTAATTATTTTTTTTTAAATATAGAGATAAAGATAAC‑CAAAAAGACAATATGAAAAATATTGTAGGCGT‑GTAAGGCaaaaaaaa                                          >  2:3252045/1‑148 (MQ=255)
                                                                                                    tCTGCTTTGTCGATACCACGTACATTTTCATAGCCTGTCTTTTGTTTTCGATTTCAAAAT‑AT‑AATGAAATTATTTTTTTTTAAATATCGAGATAACGATCAC‑AAAAACGACAATATGAAAATTATTCGAGGAGT‑GAAAGGCAAAAAAAc                                          <  2:3556408/149‑1 (MQ=255)
                                                                                                    tCTGATTTGGCTATACCACTTAAATTTTCATATCCTTTCGTTTGTTTTCTATTTCAAAAT‑AT‑AATGAAATTATTTGTTTTTAAATATCGAGATAACGATCAC‑AAAAACGACAATATGAAAATTATTCGAGGAGT‑GAAAGGCAAAAAAAc                                          <  2:1330671/149‑1 (MQ=255)
                                                                                                         tttGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTAGATTTAAAAAA‑AT‑AATTAAAATATTTTTTTTTTAATATAGAGATAACGAAAAC‑AACAAAAAAAAAAAGAAAATTTTTGGTGGGGT‑GTAAGGCcaaaaaaactcct                                     >  2:776366/1‑143 (MQ=255)
                                                                                                         tttGTCGATACCACGTACATTTTCATATCCTGTCGTGTGTTTTAGATTTTAAAAT‑AA‑AATTAAATTTTTTTTTTTTTTATATAGAGATAACGATCACAAAAAAAGAAAAAAT‑AAAAATATTAGAGGAGTGGAAGGGCAAAAAAACgcca                                      >  2:776183/1‑146 (MQ=255)
                                                                                                          ttGTCGATACCACGAACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAAT‑AT‑AATTAAATTATTTTTTTTTAAATATCGCTATAACGATCAC‑AAACACGACAATATGAAAATTATTCGAGGAGT‑GAAAGGCAAAAAAACGGCCTc                                    <  2:1374092/149‑1 (MQ=255)
                                                                                                            ttCGATACCACGAAAATTTTAATATCCTGTCGTTTGTTTTCTATTTAAAAAT‑AT‑AATTAAATTATTTTTTTTTAAATATCTAGATAACTAACAC‑AAAAACGACAATATGAAAATTATTCGAGGAGT‑GAAAGGCAAAAAAACGGCCTccc                                  <  2:899847/148‑1 (MQ=255)
                                                                                                            gTCTATACCACGTACATTTTCATATCCTGTCTTTTGTTTTCGATTTCAAAAT‑AT‑AATTAAATTATTTTTTTTTAAATATCTAGATAACGATCAC‑AAAAACGACAATATGAAAATTATTCGAGGAGT‑GAAAGGCAAAAAAACGGCCTccc                                  <  2:651762/149‑1 (MQ=255)
                                                                                                              cGATACCACGTACATTTTCATATCCTGTCGTGTGGTTTGGGTTTGAAAAT‑AT‑AATGTAAATATTTTTTTTTAAATATAGAGATAAAGATCAC‑AAAAAACAAAAAATTAAAATTATTAGGGGAGT‑GAAAGGCCAAAAAACGGCCTACCGa                                >  2:2689468/1‑149 (MQ=255)
                                                                                                               gATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTGAAAAT‑AT‑AATTAAAATATTTTTTTTTTAATATAGATATAACAATCAC‑AAAAAAGAAAATATGAAAATTATTCGAGGAGT‑GAAAGGCAAAAAAAAGGCCACCCGag                               >  2:701595/1‑148 (MQ=255)
                                                                                                               gATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAAT‑AT‑AATTAAATTATTTTTTTTTAAATATCGAGATAACGATCAC‑AAAAACGACAATATGAAAATTATTCGAGGAGT‑GAAAGGCAAAAAAACGGCCTCCCGAt                               <  2:4415302/149‑1 (MQ=255)
                                                                                                               gATACCACGTAAATTTTCATATCCTGTCTTTTGTTTTCGATTTCAAAAT‑AT‑AATGAAATTATTTGTTTTTAAATATCGAGATAACGATCAC‑AAAAACGACAATATGAAAATTATTCGAGGAGT‑GAAAGGCAAAAAAACGGCCTCCCGAt                               <  2:3254596/149‑1 (MQ=255)
                                                                                                                 tACCCCTTACTTTTTATTATCCTGTCTTTTGTTTTCGATTTAAAAAT‑AT‑ATTGAAATTATTTTTTTTTAAATATCGATATAACGATCAC‑AAAAACGACAATATGAAAATTATTCGAGGAGT‑GAAAGGCAAAAAAACGGCCTCCCGATAg                             <  2:2616267/149‑1 (MQ=255)
                                                                                                                 tACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTAAAAAT‑AT‑AATGAAATTATTTTTTTTTAAAAATAGAGATAAACATCAC‑AAAAAAGACAAAATTAAAATTATTCGAGGCGT‑GTAAGGCAAAAAAACGGCCTCCCCATAg                             >  2:4021648/1‑149 (MQ=255)
                                                                                                                 tACCACGTACATTTTCATATCCTGTCGTGTGTTTTGGATTTAAAAAA‑AT‑AAATAAATTATTTTTTTTTTAATATCGTGCTAAAGATAAC‑AAAAACCACAAAATGAAAATAATTAGAGGCGT‑GTAAGGCAATAAAAAAGCCAcccccgag                             >  2:1863939/1‑144 (MQ=255)
                                                                                                                   ccACGTACATTTTCATATCCTGTCGTGTTTTTTAGTTTTGAAAAT‑AT‑AATGAAATTATTTTTTTTTTAATATCGAGATTAAGATAAC‑AAAAAAGCCCAAATGAAACTTATTGGAGGGGT‑GGGAGGCACCAAAAAGGCCAcccccggggg                           >  2:3839303/1‑142 (MQ=255)
                                                                                                                     aCGTACATTTTCATATCCTGTCGTTTGTTTTAGATTTGAAAAT‑AT‑AATGAAATTATTTTTTTTTTAATATAGAGATAAAGATCAC‑AAAAACGACAATATGTAAAATAATGGAGGTGT‑GTAAGGCAAAAAAAAGGCCTCCCCATTgggta                         >  2:680810/1‑147 (MQ=255)
                                                                                                                     aCGTACATTTTCATATCCTGTCGTGTGTTTTCGGTTTGAAAAT‑AT‑AATGAAATTATTTTTTTTTTAATATAGAGATAAAGATCAC‑AAAAAAGACAAAATTGAAATTATTAGAGGGGT‑GAAAGGCCCAAATAAGGCCACCCCAGAGGGaa                         >  2:2882500/1‑149 (MQ=255)
                                                                                                                      cgtaatttttCATCTCCTGTGTTTTGTTTTCGATTTCAAAAT‑AT‑AATTAATTTTTTTTTTTTTAATTATCGATATAACGATCAC‑AAAAACGACAATATGAAAATTATTCGAGGAGT‑GAAAGGCAAAAAAACGGCCTCCCGATAGGGAAg                        <  1:1788648/143‑1 (MQ=255)
                                                                                                                       ttaatttttCATATCCTGTCTTTTTTTTTCTTTTTCAAAAT‑AT‑ATTTAATTTTTTTTTTTTTAAATATCGATATAACGATCAA‑AAAAACGACAATATGAAAATTATTCGAGGAGT‑GAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGc                       <  1:1763180/144‑1 (MQ=255)
                                                                                                                       gTACTTTTTCATCGCGTGTCGTTTGTTTTCGATTTCAAAAT‑AT‑ACTGAAATTATTTGTTTTTAAATATCGAGATAACGATCAC‑AAACACGACAATATGAAAATTATTCGAGGAGT‑GAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGc                       <  2:2415618/149‑1 (MQ=255)
                                                                                                                       gTACATTTTCATATCCTGTCGTTTTTTTTCTATTTCAAAAT‑AT‑AATGAAATTATTTGTTTTTAAATATCGAGATAACTATCAC‑AAAAACGACAATATGAAAATTATTCGAGGAGT‑GAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGc                       <  2:723514/149‑1 (MQ=255)
                                                                                                                        tACATTTTCATATCCTGTCGTTTGTTTTCTATTTCAAAAT‑AT‑AATGAAATTATTTGTTTTTAAATATCTATATAACGATCAC‑AAAAACGACAATATGAAAATTATTCGAGGAGT‑GAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGcc                      <  2:1673293/149‑1 (MQ=255)
                                                                                                                        tACATGTTCCTCCCCGGTCGTTTGTTTGCGATTTCAAAAT‑CT‑ACTGACATTATTTGTTTTTAACTATCGAGATACCGATCAC‑AAAAACGACAATATGAAAATTATTCGAGGAGT‑GAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGcc                      <  2:1673506/149‑1 (MQ=255)
                                                                                                                                cATATCCGGTGGTTTGTTTTCGATTTCAAAAT‑AT‑AATTAATTTATTTTTTTTTAATTATCGAGTTAACGATCAC‑AAAAACGACAATATGAAAATTATTCGAGGAGT‑GAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCaaa              <  2:2642042/149‑1 (MQ=255)
                                                                                                                                   agccTGTCTTTTGTTTTCGATTTCAAAAT‑AT‑AATTAAATTATTTGTTTTTAAATATCGAGATAACGATCAC‑AAAAACGACAATATGAAAATTATTCGAGGAGT‑GAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTg           <  2:1258490/147‑1 (MQ=255)
                                                                                                                                           gtttgtttTCGATTTCAAAAT‑AT‑AATGAAATTATTTGTTTTTAAATATCGAGATAACGATCAC‑AAAAACGACAATATGAAAATTATTCGAGGAGT‑GAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGtt   >  2:313867/1‑149 (MQ=255)
                                                                                                                                            tttgtttTCGATTTCAAAAT‑AT‑AATGAAATTATTTGTTTTTAAATATCGAGATAACGATCAC‑AAAAACGACAATATGAAAATTATTCGAGGAGT‑GAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTCGCAAAGTGCGCGTGttt  >  2:4196399/1‑149 (MQ=255)
                                                                                                                                            tttgtttTCGATTTCAAAAT‑AT‑AATGAAATTATTTGTTTTTAAATATCGAGATAACGATCAC‑AAAAACGACAATATGAAAATTATTCGAGGAGT‑GAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGttt  >  2:3470425/1‑149 (MQ=255)
                                                                                                                                                    |                                                                                                                                                
TGCAGGTTGGCAGCGGTTTCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAAT‑AT‑AATGAAATTATTTGTTTTTAAATATCGAGATAACGATCAC‑AAAAACGACAATATGAAAATTATTCGAGGAGT‑GAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTT  >  CP009273/2170559‑2170847

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A