Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F394 I0 R1 1342 215.0 7134094 96.2% 6862998 147.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP009273 2,170,707 C→A 17.3% intergenic (‑24/+284) gatY ← / ← fbaB D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit/fructose‑bisphosphate aldolase class I

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0092732,170,7070CA17.3% 385.3 / 4.6 193intergenic (‑24/+284)gatY/fbaBD‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit/fructose‑bisphosphate aldolase class I
Reads supporting (aligned to +/- strand):  ref base C (30/103);  new base A (27/3);  total (87/106)
Fisher's exact test for biased strand distribution p-value = 5.50e-12
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 193 total aligned reads displayed.

CAGGTTGGCAGCGGTTTCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATG  >  CP009273/2170561‑2170852
                                                                                                                                                  |                                                                                                                                                 
cAGGTTGGCAGCGGTTTCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCg                                                                                                                                                  <  2:521816/148‑1 (MQ=255)
 aGGTTGGCAGCGGTTTCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGa                                                                                                                                                 <  2:1903258/148‑1 (MQ=255)
 aGGTTGGCAGCGGTTTCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGa                                                                                                                                                 <  2:2177939/148‑1 (MQ=255)
  ggTTGGCAGCGGTTTCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTAGAt                                                                                                                                                >  2:3026348/1‑148 (MQ=255)
   gTTGGCAGCGGTTTCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTAGAtt                                                                                                                                               >  2:2262582/1‑148 (MQ=255)
    ttGGCAGCGGTTTCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTGTTTTCGAttt                                                                                                                                              >  1:260619/1‑148 (MQ=255)
       gCAGCGGTTTCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCaa                                                                                                                                           <  1:3415911/148‑1 (MQ=255)
       gCAGCGGTTTCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTTTTTTTGATTTaaa                                                                                                                                           >  2:307997/1‑148 (MQ=255)
           cGGTTTCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAata                                                                                                                                       <  2:3300130/148‑1 (MQ=255)
             gTTTCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATTACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAAtata                                                                                                                                     <  2:1207559/148‑1 (MQ=255)
              tttCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTGTTTTGGATTTAAAAAAATaa                                                                                                                                    >  1:2910691/1‑148 (MQ=255)
              tttCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTGTTTTAGATTTAAAAATATaa                                                                                                                                    >  2:2733575/1‑148 (MQ=255)
              tttCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTGGTTTAGATTTAAAAATATaa                                                                                                                                    >  1:406856/1‑148 (MQ=255)
                tCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATATAATg                                                                                                                                  <  1:1224672/148‑1 (MQ=255)
                  tACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATATAATGaa                                                                                                                                <  2:1879671/148‑1 (MQ=255)
                  tACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATATAATGaa                                                                                                                                <  2:2573394/148‑1 (MQ=255)
                   accaccACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATATAATGaaa                                                                                                                               <  2:2217747/148‑1 (MQ=255)
                   accaccACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATATAATGaaa                                                                                                                               <  2:631741/148‑1 (MQ=255)
                     caccacTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATATAATGAAatt                                                                                                                             <  1:2051423/148‑1 (MQ=255)
                     caccacTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATATAATGAAatt                                                                                                                             <  1:2894131/148‑1 (MQ=255)
                       ccacTTGCATCGGTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTGTTTTCGAATTCAAAATATAATGTAaatat                                                                                                                           >  1:2924628/1‑148 (MQ=255)
                        cacTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATATAATGAAattatt                                                                                                                          <  2:2427779/148‑1 (MQ=255)
                        cacTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTAAAAATATAAATAAattatt                                                                                                                          >  2:3329361/1‑148 (MQ=255)
                         acTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATATAATGAAATTAttt                                                                                                                         <  1:2685893/148‑1 (MQ=255)
                         acTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATATAATGAAATTAttt                                                                                                                         <  1:229066/148‑1 (MQ=255)
                            tGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATATAATGAAATTATTTGtt                                                                                                                      <  2:1201369/148‑1 (MQ=255)
                             gCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTGTTTTAGATTTCAAAAAATAATTAAAATATtttttt                                                                                                                     >  2:743128/1‑148 (MQ=255)
                              cATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATATAATGAAATTATTTGtttt                                                                                                                    <  2:1696431/148‑1 (MQ=255)
                               aTCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATATAATGAAATTATTTGttttt                                                                                                                   <  1:2369088/148‑1 (MQ=255)
                                tCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTTTTTTAGATTTAAAAAAATAATTAAATTTATTTTTTTTa                                                                                                                  >  2:34988/1‑148 (MQ=255)
                                tCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTTTTTTTGATTTAAAAATATAAATAAAATATATttttttt                                                                                                                  >  1:2400498/1‑147 (MQ=255)
                                 cGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATATAATGAAATTATTTGTTTTTaa                                                                                                                 <  2:1160308/148‑1 (MQ=255)
                                 cGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTAGAATTAAAAAAATAATGAAAATATTTTTTTTTaa                                                                                                                 >  2:2287749/1‑148 (MQ=255)
                                   tttCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTTTTTTAGATTTAAAAATATAAATAAATTATTTTTTTTTTAat                                                                                                               >  2:3504228/1‑148 (MQ=255)
                                    ttCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATATAATGAAATTATTTGTTTTTAAata                                                                                                              <  2:1013671/148‑1 (MQ=255)
                                     tCGAGATTGTGAATATTGAATGCCGGAACCTCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTTTTTTTTTTTTAAAAAAAAAATTAAAATATttttttttttaata                                                                                                             >  1:3028779/1‑142 (MQ=255)
                                         gaTTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCgag                                                                                                         <  2:260927/148‑1 (MQ=255)
                                         gaTTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTGTTTTCGATTTCAAAATATAATGAAATTATTTTTTTTTAAATATagag                                                                                                         >  2:536489/1‑148 (MQ=255)
                                           ttGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAGAt                                                                                                       <  2:983745/148‑1 (MQ=255)
                                           ttGTGAAGATTGACTGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAGAt                                                                                                       <  2:2137549/148‑1 (MQ=255)
                                            tgtgAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATa                                                                                                      <  1:175536/148‑1 (MQ=255)
                                            tgtgAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTTTTTTAGATTTAAAAATAAAAATAAAAAATTTTTTTTTatatatatatata                                                                                                      >  1:2820723/1‑141 (MQ=255)
                                             gtgAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATaa                                                                                                     <  2:3476105/148‑1 (MQ=255)
                                                  tatTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATAACGATc                                                                                                <  1:3077711/148‑1 (MQ=255)
                                                  tatTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTGTTTTAGATTTCAAAATATAAATAAAATATTTTTTTTTAAATATAGAGATAAAGATc                                                                                                >  2:3453451/1‑148 (MQ=255)
                                                     tGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTAGGTTTAAAAATATAATGAAATAATTTTTTTTTAAATATAGAGATAACGCTcaca                                                                                             >  2:1250023/1‑148 (MQ=255)
                                                        aTGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATAACGATCACaaaa                                                                                          <  1:2440238/148‑1 (MQ=255)
                                                          gCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTGTTTTCGATTTAAAAAAATAATGTAAATATTTTTTTTTTAATATAGATATAAAGATCACAAAAAc                                                                                        >  2:1113579/1‑148 (MQ=255)
                                                              gAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTTTTTTTGATTTAAAAATAAAAATAAAATATTTTTTTTTTAATATAGTGCTAAAGATAACaaaaaacaca                                                                                    >  1:790475/1‑143 (MQ=255)
                                                              gAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTGTTTTGGATTTGAAAATATAAATTAAATATTTTTTTTTTAATATATAGTAAAAGATCAaaaaaaaaaca                                                                                    >  1:790865/1‑143 (MQ=255)
                                                              gAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACAGTTTCATATCCTGTCGTGTGTTTTGGATTTCAAAATATTATTAAAATATTTTTTTTTTAATATAGAGATTACGATCACAAAAAAGACa                                                                                    >  2:3381405/1‑148 (MQ=255)
                                                               aaCCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTTTTTTCGATTTCAAAATATAATTAAATTATTTTTTTTTTAATATCGAGAAAACGATCACAAAAAAGACaa                                                                                   >  2:1500334/1‑148 (MQ=255)
                                                                    cATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTTGATTTAAAAATATAAATTAAATATTTTTTTTTTTATATAGAGTTAAAGATCAAAAAAAAGaaaaaaata                                                                              >  1:1642836/1‑143 (MQ=255)
                                                                     aTAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTGTTTTTGATTTGAAAAAATAATGTAAATATTTTTTTTTTAATATAGCGATAAAGATCACAAAAACCACAatattac                                                                             >  1:1098991/1‑145 (MQ=255)
                                                                       aaCCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGaaaa                                                                           <  2:1444676/148‑1 (MQ=255)
                                                                       aaCCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTGTTTTTGGTTTGAAAAAAAAATTAAAATAATTTTTTTTTAATATAGTGATAACGATCAAAAAAAACACAATAATaaaa                                                                           >  1:1304228/1‑148 (MQ=255)
                                                                         ccgccgCGCTGTGCGTTGTTCCGCATCTGCTTTGTCGATACCACTTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAACACGACAATATGAAAatt                                                                         <  2:355312/148‑1 (MQ=255)
                                                                              gcgcTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGGGTTTTGGATTTTAAAATAAAATTAAATTATTTTTTTTTTTATATATATATAAAGATAACAAAAAACAAAATATAaaaaaaattag                                                                    >  1:1592120/1‑141 (MQ=255)
                                                                               cgcTGTGCGTTGTTCAGCATCGGCTTTGTCGATACCCCTTAAATTTGCATATCCTGTCGTTTGTTTTCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATAACGATCAAAAAAACGACAATATGAAAATTATTCga                                                                   <  1:576858/148‑1 (MQ=255)
                                                                                gcTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATATAATGAAATTTTTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCgag                                                                  <  2:3493348/148‑1 (MQ=255)
                                                                                 cTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTTTTTTTGATTTAAAAATATAAATTAATTTTTTTTTTTTAAATATACTGATAAGGATCACAAAAAATACAATATTAAAaatattttagg                                                                 >  1:2443427/1‑143 (MQ=255)
                                                                                 cTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATATAATTAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAACACGACAATATGAAAATTATTCgagg                                                                 <  2:3186300/148‑1 (MQ=255)
                                                                                   gtgCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATATAATTAAATTTTTTGTTTTTAAATATCGATATAACGATCACAAAAACGACAATATGAAAATTATTCgaggag                                                               <  2:24042/148‑1 (MQ=255)
                                                                                   gtgCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGATATAACGATCACAAAAACGACAATATGAAAATTATTCgaggag                                                               <  2:1629142/148‑1 (MQ=255)
                                                                                   gtgCGTTGTTCACAATCTGATTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATATAATGAAATTATTTTTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCgaggag                                                               <  2:1626843/148‑1 (MQ=255)
                                                                                         tgttCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTGTTTTAGATTTAAAAAAATAATTAAATTATTTTTTTTTTAATATAGAGATAAACATAAAAAAAAAACCAAAATGAAAATTATTAGAGGAGTGAAAg                                                         >  2:412371/1‑148 (MQ=255)
                                                                                               gCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTGGATTTGAAAATATAATGAAAATAATTTTTTTTAAATATCGAGTTAAACATCACAAAAAAGTAAAAATTAAAATTATTAGAGGAGGGTAAGGCaaat                                                   >  2:2753849/1‑147 (MQ=255)
                                                                                                cATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTTTTTTTGATTTGAAAAAATAATTAAAATATTTTTTTTTTTATATAGAGATAAACATCACAAAAAACACAAAATTAAAAATATTAGAGGCGGGGAAGGGcaaaa                                                  >  2:2464345/1‑148 (MQ=255)
                                                                                                      cTTTGTCTATACCACTTAATTTTTCATATCCTGTCGTTTGTTTTCGATTTAAAAATATATTTAAATTTTTTTTTTTTAAATATCTAGATAACGATCAAAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGc                                            <  2:184443/148‑1 (MQ=255)
                                                                                                      cTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTGTTTTTTATTTAAAAAAAAAAATAAAATAATTTTTTTTATAAATAGAGATTACCATCACAAAAAACAAAAAATATAAAATATTAGCGGAGGGGAAGTCCAAAAAActtc                                            >  2:3289721/1‑145 (MQ=255)
                                                                                                        tttgctaTACCACGTACTTTTTAATATCCTGTCGTTTGTTTTCGATTAAAAAATATAATCAATTTATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCt                                          <  2:1594898/142‑1 (MQ=255)
                                                                                                        ttGTCGATACCACGTAAATTTTCATATCCTGTCTTTTGTTTTCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCt                                          <  2:1917814/148‑1 (MQ=255)
                                                                                                         tGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCTATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTc                                         <  2:2932144/148‑1 (MQ=255)
                                                                                                           tCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATATAATTAAATTATTTTTTTTTTAATATCGAGATAACGATCACAAAAAAGACCATATTAAAATTATTAGAGGAGTGAAAGGCAAAAAAAAGGCCTccc                                       >  2:789243/1‑148 (MQ=255)
                                                                                                           tCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATATAATTAAATTATTTTTTTTTTAATATAGAGATAAAGATCACAAAAAAGACAATATTAAAATTATTAGAGGAGTGTAAGGCAAAAAAAAGGCCAccc                                       >  2:2631487/1‑148 (MQ=255)
                                                                                                             gATACCACTAAATTTTTAATATCCTGTGTTTTTTTTTCTATTACAAAATATAATCAATTTTTTTTTTTTTAAATATCGAGATAACTATCAAAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGa                                     <  1:2525427/148‑1 (MQ=255)
                                                                                                              aTACCACTTACATTTTCATATCATGTCGTTTGTTTTCGATTTAAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAACACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGAt                                    <  2:2227199/148‑1 (MQ=255)
                                                                                                               tACCACGTACATTTTCATATCCTGTCGTGTGGTTTGGATTTAAAAATATAATGTAATTTTTTTTTTTTTAATATAGAGATAACGATCACAAAAACGACAAAATTAAAAATATTGGAGGTGTGGAAGGGAAAAAAAAGGCCTcccccga                                   >  2:3058398/1‑144 (MQ=255)
                                                                                                                 ccACGTACATTTTAATATCCTGTCTTTTTTTTTCTATTACAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAgg                                 <  2:233943/148‑1 (MQ=255)
                                                                                                                  cACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATATAAATAAATTATTTTTTTTTAAATTTAGAGATAAACATCACAAAAAACACCATATGAAAATTAATCGAGGTGTGAAATGCAAAAAAAAGGCCTCCCGCTAggg                                >  2:1439225/1‑148 (MQ=255)
                                                                                                                   aCGTAAATTTTCTTATCCTGTCGTTTGTTTTCTATTACAAAATATAATGAATTTATTTTTTTTTAAATATCGATATAACGATCAAAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGa                               <  2:371681/148‑1 (MQ=255)
                                                                                                                     ttaaaTTTTCATATCCTTTCTTTTGTTTTCTATTACAAAATATAATTAAATTTTTTGTTTTTAAATATCGATATAACTATAACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAg                             <  2:1021525/144‑1 (MQ=255)
                                                                                                                     gTAAATTTTAATATCCTTTCTTTTTTTTTCTATTTAAAAATATAATGAAATTATTTTTTTTTAAATATCGAGATAACTATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAg                             <  2:425360/148‑1 (MQ=255)
                                                                                                                      taatttttCATATCCTTTCTTTTTTTTTCTATTTAAAAATATAATTAAATTATTTTTTTTTAAATATCGAGATAACTATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGc                            <  1:875025/144‑1 (MQ=255)
                                                                                                                       aaaTTTTCATATCCTGTCTTTTTTTTTCTATTTAAAAATATAATTAAATTTTTTGTTTTTAAATATCGAGATAACGAACACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGcc                           <  1:582719/146‑1 (MQ=255)
                                                                                                                        atttttCATATCCTGTCGTTTTTTTTCTATTAAAAAATATAATCAATTTATTTTTTTTTAAATATCGATATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCg                          <  1:1504455/146‑1 (MQ=255)
                                                                                                                         ttttaaatatCTTGTGTTTTTTTTTCTTTTTAAAAATAAATTTAATTTTTTTTTTTTAAAATATCTATATAACTAAAAAAAACACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGt                         <  1:1837470/142‑1 (MQ=255)
                                                                                                                         ttttaCATTTCCTGTATTTTTTTTTCTATTTAAAAATATATTTAATTTATTTTTTTTTAAATTTCGATATAACGAAAAAAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGt                         <  1:3398176/147‑1 (MQ=255)
                                                                                                                           ttaaatatCCTGTCTTTTGTTTTCTATTAAAAAATATAATTAAATTTTTTTTTTTTAAATATCTATATAACTATCAAAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAg                       <  1:2312471/144‑1 (MQ=255)
                                                                                                                              cATATCCTGTCGTTTGTTTTCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCaa                    <  2:589880/148‑1 (MQ=255)
                                                                                                                                tctCCTGTCTTTTGTTTTAGATTAAAAAATATAATCTATTTATTTGTTTTTAAATATCGATAAACCGAACACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAg                  <  1:2079976/146‑1 (MQ=255)
                                                                                                                                        ctttttttttCTATTTAAAAATATAATTAATTTTTTTTTTTTTAATTATCTATATAACTATCAAAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCgtg          <  1:536489/146‑1 (MQ=255)
                                                                                                                                        cGTTTGTTTTCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCgtg          >  2:187036/1‑148 (MQ=255)
                                                                                                                                          ttttttttCTATTTAAAAATATACTTATATTTTTTTTTTTTAAATATCGAGATAACGATAAAAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGtt        <  1:3504228/148‑1 (MQ=255)
                                                                                                                                          tttgtttTCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGtt        >  1:2762890/1‑148 (MQ=255)
                                                                                                                                           ttgtttTCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGttt       >  1:1770375/1‑148 (MQ=255)
                                                                                                                                           ttgtttTCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGttt       >  2:2647961/1‑148 (MQ=255)
                                                                                                                                            tgtttTAGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGtttt      <  2:1906363/148‑1 (MQ=255)
                                                                                                                                                ttCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATg  >  1:3136376/1‑148 (MQ=255)
                                                                                                                                                ttCGATTTAAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATg  <  2:1410511/148‑1 (MQ=255)
                                                                                                                                                  |                                                                                                                                                 
CAGGTTGGCAGCGGTTTCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATG  >  CP009273/2170561‑2170852

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A