Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F142 I0 R1 859 274.6 8723680 96.4% 8409627 150.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP009273 2,586,791 G→T 10.3% G113G (GGC→GGA)  ypfH ← palmitoyl‑CoA esterase activity, uncertain physiological substrate

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0092732,586,7910GT10.3% 989.9 / 62.9 283G113G (GGC→GGA) ypfHpalmitoyl‑CoA esterase activity, uncertain physiological substrate
Reads supporting (aligned to +/- strand):  ref base G (120/133);  new base T (16/14);  total (136/147)
Fisher's exact test for biased strand distribution p-value = 5.67e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 295 total aligned reads displayed.

TCGATAACCGGATCTTCACCGCCATGAATCAGGTGAATTGTCGTGGCTGTAGACGCAGTTTCCGGCAGGCTCGCATAGCGTCCGTTAAAAGCAATGACGCGTGAAGCAAGGCCCGGTTCGGCTTTAATGCTCTCCAGCACCATAATCGCGCCTTGAGAGAAACCGATGAGCGCCGTGGCGTTAGCCCCTACTCCGCTCTGTTTCTGCCAGTAGCGCACCGTTTCAATAAACGTCGGCATGATCGCATCCACACGCGCCTGGCGATTATCTTCCGTAATACCCTGCACCGAAAACCACTG  >  CP009273/2586642‑2586940
                                                                                                                                                     |                                                                                                                                                     
tCGATAACCGGATCTTCACCGCCATGAATCAGGTGAATTGTCGTGGCTGTAGACGCAGTTTCCGGCAGGCTCGCATAGCGTCCGTTAAAAGCAATGACGCGTGAAGCAAGGCCCGGTTCGGCTTTAATGCTCTCCAGCACCATAATcgcg                                                                                                                                                       >  1:654072/1‑150 (MQ=255)
 cGATAACCGGATCTTCACCGCCATGAATCAGGTGAATTGTCGTGGCTGTAGACGCAGTTTCCGGCAGGCTCGCATAGCGTCCGTTAAAAGCAATGACGCGTGAAGCAAGGCCCGGTTCGGCTTTAATGCTCTCCAGCACCATAATCgcgc                                                                                                                                                      >  2:2637507/1‑150 (MQ=255)
    tAACCGGATCTTCACCGCCATGAATCAGGTGAATTGTCGTGGCTGTAGACGCAGTTTCCGGCAGGCTCGCATAGCGTCCGTTAAAAGCAATGACGCGTGAAGCAAGGCCCGGTTCGGCTTTAATGCTCTCCAGCACCATAATCGCGCCtt                                                                                                                                                   >  1:1252838/1‑150 (MQ=255)
    tAACCGGATCTTCACCGCCATGAATCAGGTGAATTGTCGTGGCTGTAGACGCAGTTTCCGGCAGGCTCGCATAGCGTCCGTTAAAAGCAATGACGCGTGAAGCAAGGCCCGGTTCGGCTTTAATGCTCTCCAGCACCATAATCGCGCCtt                                                                                                                                                   <  1:1634198/150‑1 (MQ=255)
    tAACCGGATCTTCACCGCCATGAATCAGGTGAATTGTCGTGGCTGTAGACGCAGTTTCCGGCAGGCTCGCATAGCGTCCGTTAAAAGCAATGACGCGTGAAGCAAGGCCCGGTTCGGCTTTAATGCTCTCCAGCACCATAATCGCGCCtt                                                                                                                                                   <  1:2382645/150‑1 (MQ=255)
    tAACCGGATCTTCACCGCCATGAATCAGGTGAATTGTCGTGGCTGTAGACGCAGTTTCCGGCAGGCTCGCATAGCGTCCGTTAAAAGCAATGACGCGTGAAGCAAGGCCCGGTTCGGCTTTAATGCTCTCCAGCACCATAATCGCGCCtt                                                                                                                                                   >  2:2238589/1‑150 (MQ=255)
     aaCCGGATCTTCACCGCCATGAATCAGGTGAATTGTCGTGGCTGTAGACGCAGTTTCCGGCAGGCTCGCATAGCGTCCGTTAAAAGCAATGACGCGTGAAGCAAGGCCCGGTTCGGCTTTAATGCTCTCCAGCACCATAATCGCGCCTTg                                                                                                                                                  >  1:3187191/1‑150 (MQ=255)
           aTCTTCACCGCCATGAATCAGGTGAATTGTCGTGGCTGTAGACGCAGTTTCCGGCAGGCTCGCATAGCGTCCGTTAAAAGCAATGACGCGTGAAGCAAGGCCCGGTTCGGCTTTAATGCTCTCCAGCACCATAATCGCGCCTTGAGAGaa                                                                                                                                            >  1:4094535/1‑150 (MQ=255)
             cTTCACCGCCATGAATCAGGTGAATTGTCGTGGCTGTAGACGCAGTTTCCGGCAGGCTCGCATAGCGTCCGTTAAAAGCAATGACGCGTGAAGCAAGGCCCGGTTCGGCTTTAATGCTCTCCAGCACCATAATCGCGCCTTGAGAGAAAc                                                                                                                                          <  2:2922071/150‑1 (MQ=255)
              ttCACCGCCATGAATCAGGTGAATTGTCGTGGCTGTAGACGCAGTTTCCGGCAGGCTCGCAGAGCGTCCGTTAAAAGCAATGACGCGTGAAGCAAGGCCCGGTTCGGCTTTAATGCTCTCCAGCACCATAATCGCGCCTTGAGAGAAAcc                                                                                                                                         <  2:466796/150‑1 (MQ=255)
               tCACCGCCATGAATCAGGTGAATTGTCGTGGCTGTAGACGCAGTTTCCGGCAGGCTCGCATAGCGTCCGTTAAAAGCAATGACGCGTGAAGCAAGGCCCGGTTCGGCTTTAATGCTCTCCAGCACCATAATCGCGCCTTGAGAGAAACCg                                                                                                                                        <  1:1310060/150‑1 (MQ=255)
                cACCGCCATGAATCAGGTGAATTGTCGTGGCTGTAGACGCAGTTTCCGGCAGGCTCGCATAGCGTCCGTTAAAAGCAATGACGCGTGAAGCAAGGCCCGGTTCGGCTTTAATGCTCTCCAGCACCATAATCGCGCCTTGAGAGAAACCGa                                                                                                                                       <  2:835264/150‑1 (MQ=255)
                cACCGCCATGAATCAGGTGAATTGTCGTGGCTGTAGACGCAGTTTCCGGCAGGCTCGCATAGCGTCCGTTAAAAGCAATGACGCGTGAAGCAAGGCCCGGTTCGGCTTTAATGCTCTCCAGCACCATAATCGCGCCTTGAGAGAAACCGa                                                                                                                                       >  2:3238262/1‑150 (MQ=255)
                 aCCGCCATGAATCAGGTGAATTGTCGTGGCTGTAGACGCAGTTTCCGGCAGGCTCGCATAGCGTCCGTTAAAAGCAATGACGCGTGAAGCAAGGCCCGGTTCGGCTTTAATGCTCTCCAGCACCATAATCGCGCCTTGAGAGAAACCGAt                                                                                                                                      >  2:2593405/1‑150 (MQ=255)
                 aCCGCCATGAATCAGGTGAATTGTCGTGGCTGTAGACGCAGTTTCCGGCAGGCTCGCATAGCGTCCGTTAAAAGCAATGACGCGTGAAGCAAGGCCCGGTTCGGCTTTAATGCTCTCCAGCACCATAATCGCGCCTTGAGAGAAACCGAt                                                                                                                                      >  2:1434834/1‑150 (MQ=255)
                        tGAATCAGGTGAATTGTCGTGGCTGTAGACGCAGTTTCCGGCAGGCTCGCATAGCGTCCGTTAAAAGCAATGACGCGTGAAGCAAGGCCCGGTTCGGCTTTAATGCTCTCCAGCACCATAATCGCGCCTTGAGAGAAACCGATGAGCGcc                                                                                                                               >  1:625321/1‑150 (MQ=255)
                        tGAATCAGGTGAATTGTCGTGGCTGTAGACGCAGTTTCCGGCAGGCTCGCATACCGTCCGTTAAAAGCAATGACGCGTGAAGCAAGGCCCGGTTCGGCTTTAATGCTCTCCAGCACCATAATCGCGCCTTGAGAGAAACCGATGAGCGcc                                                                                                                               >  1:90836/1‑150 (MQ=255)
                          aaTCAGGTGAATTGTCGTGGCTGTAGACGCAGTTTCCGGCAGGCTCGCATAGCGTCCGTTAAAAGCAATGACGCGTGAAGCAAGGCCCGGTTCGGCTTTAATGCTCTCCAGCACCATAATCGCGCCTTGAGAGAAACCGATGAGCGCCGt                                                                                                                             <  2:2842081/150‑1 (MQ=255)
                          aaTCAGGTGAATTGTCGTGGCTGTAGACGCAGTTTCCGGCAGGCTCGCATAGCGTCCGTTAAAAGCAATGACGCGTGAAGCAAGGCCCGGTTCGGCTTTAATGCTCTCCAGCACCATAATCGCGCCTTGAGAGAAACCGATGAGCGCCGt                                                                                                                             <  1:3629321/150‑1 (MQ=255)
                             cAGGTGAATTGTCGTGGCTGTAGACGCAGTTTCCGGCAGGCTCGCATAGCGTCCGTTAAAAGCAATGACGCGTGAAGCAAGGCCCGGTTCGGCTTTAATGCTCTCCAGCACCATAATCGCGCCTTGAGAGAAACCGATGAGCGCCGTGGc                                                                                                                          <  1:185633/150‑1 (MQ=255)
                              aGGTGAATTGTCGTGGCTGTAGACGCAGTTTCCGGCAGGCTCGCATAGCGTCCGTTAAAAGCAATGACGCGTGAAGCAAGGCCCGGTTCGGCTTTAATGCTCTCCAGCACCATAATCGCGCCTTGAGAGAAACCGATGAGCGCCGTGGCg                                                                                                                         >  2:2815271/1‑150 (MQ=255)
                              aGGTGAATTGTCGTGGCTGTAGACGCAGTTTCCGGCAGGCTCGCATAGCGTCCGTTAAAAGCAATGACGCGTGAAGCAAGGCCCGGTTCGGCTTTAATGCTCTCCAGCACCATAATCGCGCCTTGAGAGAAACCGATGAGCGCCGTGGCg                                                                                                                         <  1:4165677/150‑1 (MQ=255)
                               ggTGAATTGTCGTGGCTGTAGACGCAGTTTCCGGCAGGCTCGCATAGCGTCCGTTAAAAGCAATGACGCGTGAAGCAAGGCCCGGTTCGGCTTTAATGCTCTCCAGCACCATAATCGCGCCTTGAGAGAAACCGATGAGCGCCGTGGCGt                                                                                                                        >  1:1061218/1‑150 (MQ=255)
                                gTGAATTGTCGTGGCTGTAGACGCAGTTTCCGGCAGGCTCGCATAGCGTCCGTTAAAAGCAATGACGCGTGAAGCAAGGCCCGGTTCGGCTTTAATGCTCTCCAGCACCATAATCGCGCCTTGAGAGAAACCGATGAGCGCCGTGGCGtt                                                                                                                       >  1:479978/1‑150 (MQ=255)
                                 tGAATTGTCGTGGCTGTAGACGCAGTTTCCGGCAGGCTCGCATAGCGTCCGTTAAAAGCAATGACGCGTGAAGCAAGGCCCGGTTCGGCTTTAATGCTCTCCAGCACCATAATCGCGCCTTGAGAGAAACCGATGAGCGCCGTGGCGTTa                                                                                                                      <  2:2709821/150‑1 (MQ=255)
                                   aaTTGTCGTGGCTGTAGACGCAGTTTCCGGCAGGCTCGCATAGCGTCCGTTAAAAGCAATGACGCGTGAAGCAAGGCCCGGTTCGGCTTTAATGCTCTCCAGCACCATAATCGCGCCTTGAGAGAAACCGATGAGCGCCGTGGCGTTAGc                                                                                                                    >  2:658533/1‑150 (MQ=255)
                                   aaTTGTCGTGGCTGTAGACGCAGTTTCCGGCAGGCTCGCATAGCGTCCGTTAAAAGCAATGACGCGTGAAGCAAGGCCCGGTTCGGCTTTAATGCTCTCCAGCACCATAATCGCGCCTTGAGAGAAACCGATGAGCGCCGTGGCGTTAGc                                                                                                                    <  1:117638/150‑1 (MQ=255)
                                      tGTCGTGGCTGTAGACGCAGTTTCCGGCAGGCTCGCATAGCGTCCGTTAAAAGCAATGACGCGTGAAGCAAGGCCCGGTTCGGCTTTAATGCTCTCCAGCACCATAATCGCGCCTTGAGAGAAACCGATGAGCGCCGTGGCGTTAGcccc                                                                                                                 <  2:3151589/150‑1 (MQ=255)
                                         cGTGGCTGTAGACGCAGTTTCCGGCAGGCTCGCATAGCGTCCGTTAAAAGCAATGACGCGTGAAGCAAGGCCCGGTTCGGCTTTAATGCTCTCCAGCACCATAATCGCGCCTTGAGAGAAACCGATGAGCGCCGTGGCGTTAGCCCCTAc                                                                                                              <  1:1651051/150‑1 (MQ=255)
                                           tGGCTGTAGACGCAGTTTCCGGCAGGCTCGCATAGCGTCCGTTAAAAGCAATGACGCGTGAAGCAAGGCCCGGTTCGGCTTTAATGCTCTCCAGCACCATAATCGCGCCTTGAGAGAAACCGATGAGCGCCGTGGCGTTAGCCCCTACTc                                                                                                            >  2:2547558/1‑150 (MQ=255)
                                            ggCTGTAGACGCAGTTTCCGGCAGGCTCGCATAGCGTCCGTTAAAAGCAATGACGCGTGAAGCAAGGCCCGGTTCGGCTTTAATGCTCTCCAGCACCATAATCGCGCCTTGAGAGAAACCGATGAGCGCCGTGGCGTTAGCCCCTACTcc                                                                                                           <  2:167116/150‑1 (MQ=255)
                                                gTAGACGCAGTTTCCGGCAGGCTCGCATAGCGTCCGTTAAAAGCAATGACGCGTGAAGCAAGGCCCGGTTCGGCTTTAATGCTCTCCAGCACCATAATCGCGCCTTGAGAGAAACCGATGAGCGCCGTGGCGTTAGCCCCTACTCCGctc                                                                                                       <  2:576125/150‑1 (MQ=255)
                                                 tAGACGCAGTTTCCGGCAGGCTCGCATAGCGTCCGTTAAAAGCAATGACGCGTGAAGCAAGGCCCGGTTCGGCTTTAATGCTCTCCAGCACCATAATCGCGCCTTGAGAGAAACCGATGAGCGCCGTGGCGTTAGCCCCTACTCCGctct                                                                                                      <  2:1280910/150‑1 (MQ=255)
                                                   gACGCAGTTTCCGGCAGGCTCGCATAGCGTCCGTTAAAAGCAATGACGCGTGAAGCAAGGCCCGGTTCGGCTTTAATGCTCTCCAGCACCATAATCGCGCCTTGAGAGAAACCGATGAGCGCCGTGGCGTTAGCCCCTACTCCGCTCTGt                                                                                                    <  2:4030871/150‑1 (MQ=255)
                                                    aCGCAGTTTCCGGCAGGCTCGCATAGCGTCCGTTAAAAGCAATGACGCGTGAAGCAAGGCCCGGTTCGGCTTTAATGCTCTCCAGCACCATAATCGCGCCTTGAGAGAAACCGATGAGCGCCGTGGCGTTAGCCCCTACTCCGCTCTGtt                                                                                                   <  1:3074283/150‑1 (MQ=255)
                                                     cGCAGTTTCCGGCAGGCTCGCATAGCGTCCGTTAAAAGCAATGACGCGTGAAGCAAGGCCCGGTTCGGCTTTAATGCTCTCCAGCACCATAATCGCGCCTTGAGAGAAACCGATGAGCGCCGTGGCGTTAGCCCCTACTCCGCTCTGttt                                                                                                  >  1:1322757/1‑150 (MQ=255)
                                                      gCAGTTTCCGGCAGGCTCGCATAGCGTCCGTTAAAAGCAATGACGCGTGAAGCAAGGCCCGGTTCGGCTTTAATGCTCTCCAGCACCATAATCGCTCCTTGAGAGAAACCGATGAGCGCCGTGGCGTTAGCCCCTACTCCGCTCTGTTTc                                                                                                 <  2:1538191/150‑1 (MQ=255)
                                                          tttCCGGCAGGCTCGCATAGCGTCCGTTAAAAGCAATGACGCGTGAAGCAAGGCCCGGTTCGGCTTTAATGCTCTCCAGCACCATAATCGCGCCTTGAGAGAAACCGATGAGCGCCGTGGCGTTAGCCCCTACTCCGCTCTGTTTCTGcc                                                                                             >  2:798602/1‑150 (MQ=255)
                                                          tttCCGGCAGGCTCGCATAGCGTCCGTTAAAAGCAATGACGCGTGAAGCAAGGCCCGGTTCGGCTTTAATGCTCTCCAGCACCATAATCGCGCCTTGAGAGAAACCGATGAGCGCCGTGGCGTTAGCCCCTACTCCGCTCTGTTTCTGcc                                                                                             >  1:1825235/1‑150 (MQ=255)
                                                            tCCGGCAGGCTCGCATAGCGTCCGTTAAAAGCAATGACGCGTGAAGCAAGGCCCGGTTCGGCTTTAATGCTCTCCAGCACCATAATCGCTCCTTGAGAGAAACCGATGAGCGCCGTGGCGTTAGCCCCTACTCCGCTCTGTTTCTGCCAg                                                                                           <  2:1698358/150‑1 (MQ=255)
                                                             ccGGCAGGCTCGCATAGCGTCCGTTAAAAGCAATGACGCGTGAAGCAAGGCCCGGTTCGGCTTTAATGCTCTCCAGCACCATAATCGCGCCTTGAGAGAAACCGATGAGCGCCGTGGCGTTAGCCCCTACTCCGCTCTGTTTCTGCCAGt                                                                                          <  1:2798991/150‑1 (MQ=255)
                                                              cGGCAGGCTCGCATAGCGTCCGTTAAAAGCAATGACGCGTGAAGCAAGGCCCGGTTCGGCTTTAATGCTCTCCAGCACCATAATCGCGCCTTGAGAGAAACCGATGAGCGCCGTGGCGTTAGCCCCTACTCCGCTCTGTTTCTGCCAGTa                                                                                         <  1:3390206/150‑1 (MQ=255)
                                                               ggCAGGCTCGCATAGCGTCCGTTAAAAGCAATGACGCGTGAAGCAAGGCCCGGTTCGGCTTTAATGCTCTCCAGCACCATAATCGCGCCTTGAGAGAAACCGATGAGCGCCGTGGCGTTAGCCCCTACTCCGCTCTGTTTCTGCCAGTAg                                                                                        <  2:2117076/150‑1 (MQ=255)
                                                                     cTCGCATAGCGTCCGTTAAAAGCAATGACGCGTGAAGCAAGGCCCGGTTCGGCTTTAATGCTCTCCAGCACCATAATCGCGCCTTGAGAGAAACCGATGAGCGCCGTGGCGTTAGCCCCTACTCCGCTCTGTTTCTGCCAGTAGCGCAcc                                                                                  <  1:3310369/150‑1 (MQ=255)
                                                                     cTCGCATAGCGTCCGTTAAAAGCAATGACGCGTGAAGCAAGGCCCGGTTCGGCTTTAATGCTCTCCAGCACCATAATCGCGCCTTGAGAGAAACCGATGAGCGCCGTGGCGTTAGCCCCTACTCCGCTCTGTTTCTGCCAGTAGCGCAcc                                                                                  <  1:3310520/150‑1 (MQ=255)
                                                                        gCATAGCGTCCGTTAAAAGCAATGACGCGTGAAGCAAGGCCCGGTTCGGCTTTAATGCTCTCCAGCACCATAATCGCGCCTTGAGAGAAACCGATGAGCGCCGTGGCGTTAGCCCCTACTCCGCTCTGTTTCTGCCAGTAGCGCACCGtt                                                                               <  1:3682174/150‑1 (MQ=255)
                                                                          aTAGCGTCCGTTAAAAGCAATGACGCGTGAAGCAAGGCCCGGTTCGGCTTTAATGCTCTCCAGCACCATAATCGCGCCTTGAGAGAAACCGATGAGCGCCGTGGCGTTAGCCCCTACTCCGCTCTGTTTCTGCCAGTAGCGCACCGTTTc                                                                             <  2:1055141/150‑1 (MQ=255)
                                                                            aGCGTCCGTTAAAAGCAATGACGCGTGAAGCAAGGCCCGGTTCGGCTTTAATGCTCTCCAGCACCATAATCGCTCCTTGAGAGAAACCGATGAGCGCCGTGGCGTTAGCCCCTACTCCGCTCTGTTTCTGCCAGTAGCGCACCGTTTCaa                                                                           >  2:4111157/1‑150 (MQ=255)
                                                                            aGCGTCCGTTAAAAGCAATGACGCGTGAAGCAAGGCCCGGTTCGGCTTTAATGCTCTCCAGCACCATAATCGCGCCTTGAGAGAAACCGATGAGCGCCGTGGCGTTAGCCCCTACTCCGCTCTGTTTCTGCCAGTAGCGCACCGTTTCaa                                                                           >  2:4349764/1‑150 (MQ=255)
                                                                            aGCGTCCGTTAAAAGCAATGACGCGTGAAGCAAGGCCCGGTTCGGCTTTAATGCTCTCCAGCACCATAATCGCGCCTTGAGAGAAACCGATGAGCGCCGTGGCGTTAGCCCCTACTCCGCTCTGTTTCTGCCAGTAGCGCACCGTTTCaa                                                                           >  2:2412694/1‑150 (MQ=255)
                                                                              cGTCCGTTAAAAGCAATGACGCGTGAAGCAAGGCCCGGTTCGGCTTTAATGCTCTCCAGCACCATAATCGCGCCTTGAGAGAAACCGATGAGCGCCGTGGCGTTAGCCCCTACTCCGCTCTGTTTCTGCCAGTAGCGCACCGTTTCAATa                                                                         <  2:3481624/150‑1 (MQ=255)
                                                                               gTCCGTTAAAAGCAATGACGCGTGAAGCAAGGCCCGGTTCGGCTTTAATGCTCTCCAGCACCATAATCGCGCCTTGAGAGAAACCGATGAGCGCCGTGGCGTTAGCCCCTACTCCGCTCTGTTTCTGCCAGTAGCGCACCGTTTCAATac                                                                        >  2:939323/1‑149 (MQ=255)
                                                                                  cGTTAAAAGCAATGACGCGTGAAGCAAGGCCCGGTTCGGCTTTAATGCTCTCCAGCACCATAATCGCGCCTTGAGAGAAACCGATGAGCGCCGTGGCGTTAGCCCCTACTCCGCTCTGTTTCTGCCAGTAGCGCACCGTTTCAATAAACg                                                                     >  2:1706295/1‑150 (MQ=255)
                                                                                   gTTAAAAGCAATGACGCGTGAAGCAAGGCCCGGTTCGGCTTTAATGCTCTCCAGCACCATAATCGCGCCTTGAGAGAAACCGATGAGCGCCGTGGCGTTAGCCCCTACTCCGCTCTGTTTCTGCCAGTAGCGCACCGTTTCAATAAACGt                                                                    <  2:1179140/150‑1 (MQ=255)
                                                                                    ttAAAAGCAATGACGCGTGAAGCAAGGCCCGGTTCGGCTTTAATGCTCTCCAGCACCATAATCGCGCCTTGAGAGAAACCGATGAGCGCCGTGGCGTTAGCCCCTACTCCGCTCTGTTTCTGCCAGTAGCGCACCGTTTCAATAAACGTc                                                                   <  2:2366062/150‑1 (MQ=255)
                                                                                     tAAAAGCAATGACGCGTGAAGCAAGGCCCGGTTCGGCTTTAATGCTCTCCAGCACCATAATCGCGCCTTGAGAGAAACCGATGAGCGCCGTGGCGTTAGCCCCTACTCCGCTCTGTTTCTGCCAGTAGCGCACCGTTTCAATAAACGTCg                                                                  <  1:3799710/150‑1 (MQ=255)
                                                                                      aaaaGCAATGACGCGTGAAGCAAGGCCCGGTTCGGCTTTAATGCTCTCCAGCACCATAATCGCGCCTTGAGAGAAACCGATGAGCGCCGTGGCGTTAGCCCCTACTCCGCTCTGTTTCTGCCAGTAGCGCACCGTTTCAATAAACGTCgg                                                                 >  2:697371/1‑150 (MQ=255)
                                                                                       aaaGCAATGACGCGTGAAGCAAGGCCCGGTTCGGCTTTAATGCTCTCCAGCACCATAATCGCGCCTTGAGAGAAACCGATGAGCGCCGTGGCGTTAGCCCCTACTCCGCTCTGTTTCTGCCAGTCGCGCACCGTTTCAATAAACGTCGGc                                                                >  1:2577229/1‑150 (MQ=255)
                                                                                         aGCAATGACGCGTGAAGCAAGGCCCGGTTCGGCTTTAATGCTCTCCAGCACCATAATCGCGCCTTGAGAGAAACCGATGAGCGCCGTGGCGTTAGCCCCTACTCCGCTCTGTTTCTGCCAGTAGCGCACCGTTTCAATAAACGTCGGCAt                                                              <  2:900928/150‑1 (MQ=255)
                                                                                           cAATGACGCGTGAAGCAAGGCCCGGTTCGGCTTTAATGCTCTCCAGCACCATAATCGCGCCTTGAGAGAAACCGATGAGCGCCGTGGCGTTAGCCCCTACTCCGCTCTGTTTCTGCCAGTAGCGCACCGTTTCAATAAACGTCGGCATGa                                                            <  1:4268492/150‑1 (MQ=255)
                                                                                             aTGACGCGTGAAGCAAGGCCCGGTTCGGCTTTAATGCTCTCCAGCACCATAATCGCGCCTTGAGAGAAACCGATGAGCGCCGTGGCGTTAGCCCCTACTCCGCTCTGTTTCTGCCAGTAGCGCACCGTTTCACTAAACGTCGGCATGATc                                                          >  2:372558/1‑150 (MQ=255)
                                                                                                aCGCGTGAAGCAAGGCCCGGTTCGGCTTTAATGCTCTCCAGCACCATAATCGCGCCTTGAGAGAAACCGATGAGCGCCGTGGCGTTAGCCCCTACTCCGCTCTGTTTCTGCCAGTAGCGCACCGTTTCAATAAACGTCGGCATGATCGCa                                                       <  2:1602275/150‑1 (MQ=255)
                                                                                                       aaGCAAGGCCCGGTTCGTCTTTAATGCTCTCCAGCACCATAATCGCGCCTTGAGAGAAACCGATGAGCGCCGTGGCGTTAGCCCCTACTCCGCTCTGTTTCTGCCAGTAGCGCACCGTTTCAATAAACGTCGGCATGATCGCATCCacac                                                <  2:2979005/150‑1 (MQ=255)
                                                                                                       aaGCAAGGCCCGGTTCGGCTTTAATGCTCTCCAGCACCATAATCGCGCCTTGAGAGAAACCGATGAGCGCCGTGGCGTTAGCCCCTACTCCGCTCTGTTTCTGCCAGTAGCGCACCGTTTCAATAAACGTCGGCATGATCGCATCCacac                                                >  1:3742706/1‑150 (MQ=255)
                                                                                                         gCAAGGCCCGGTTCGGCTTTAATGCTCTCCAGCACCATAATCGCGCCTTGAGAGAAACCGATGAGCGCCGTGGCGTTAGCCCCTACTCCGCTCTGTTTCTGCCAGTAGCGCACCGTTTCAATAAACGTCGGCATGATCGCATCCACAcgc                                              >  2:540231/1‑150 (MQ=255)
                                                                                                           aaGGCCCGGTTCGGCTTTAATGCTCTCCAGCACCATAATCGCGCCTTGAGAGAAACCGATGAGCGCCGTGGCGTTAGCCCCTACTCCGCTCTGTTTCTGCCAGTAGCGCACCGTTTCAATAAACGTCGGCATGATCGCATCCACACgcgc                                            >  1:1391052/1‑150 (MQ=255)
                                                                                                              gCCCGGTTCGGCTTTAATGCTCTCCAGCACCATAATCGCGCCTTGAGAGAAACCGATGAGCGCCGTGGCGTTAGCCCCTACTCCGCTCTGTTTCTGCCAGTAGCGCACCGTTTCAATAAACGTCGGCATGATCGCATCCACACGCGCCTg                                         <  2:1824563/150‑1 (MQ=255)
                                                                                                              gCCCGGGTCGGCTTTAATGCTCTCCAGCACCATCATCGCGCCTTGAGAGAAACCGATGAGCGCCGTGGCGTTAGCCCCTACTCCGCTCTGTTTCTGCCAGTAGCGCACCGTTTCAATAAACGTCGGCATGATCGCATCCACACGCGCCTg                                         <  2:2646861/150‑1 (MQ=255)
                                                                                                               cccGGTTCGGCTTTAATGCTCTCCAGCACCATAATCGCGCCTTGAGAGAAACCGATGAGCGCCGTGGCGTTAGCCCCTACTCCGCTCTGTTTCTGCCAGTAGCGCACCGTTTCAATAAACGTCGGCATGATCGCATCCACACGCGCCTgg                                        <  2:669751/150‑1 (MQ=255)
                                                                                                                  ggTTCGGCTTTAATGCTCTCCAGCACCATAATCGCTCCTTGAGAGAAACCGATGAGCGCCGTGGCGTTAGCCCCTACTCCGCTCTGTTTCTGCCAGTAGCGCACCGTTTCAATAAACGTCGGCATGATCGCATCCACACGCGCCTGGCGa                                     <  2:919975/150‑1 (MQ=255)
                                                                                                                  ggTTCGGCTTTAATGCTCTCCAGCACCATAATCGCTCCTTGAGAGAAACCGATGAGCGCCGTGGCGTGAGCCCCTACTCCGCTCTGTTTCTGCCAGTAGCGCACCGTTTCAATAAACGTCGGCATGATCGCATCCACACGCGCCTGGCGa                                     <  2:3565660/150‑1 (MQ=255)
                                                                                                                  ggTTCGGCTTTAATGCTCTCCAGCACCATAATCGCGCCTTGAGAGAAACCGATGAGCGCCGTGGCGTTAGCCCCTACTCCGCTCTGTTTCTGCCAGTAGCGCACCGTTTCAATAAACGTCGGCATGATCGCATCCACACGCGCCTGGCGa                                     >  1:3959786/1‑150 (MQ=255)
                                                                                                                  ggTTCGGCTTTAATGCTCTCCAGCACCATAATCGCGCCTTGAGAGAAACCGATGAGCGCCGTGGCGTTAGCCCCTACTCCGCTCTGTTTCTGCCAGTAGCGCACCGTTTCAATAAACGTCGGCATGATCGCATCCACACGCGCCTGGCGa                                     >  2:3540974/1‑150 (MQ=255)
                                                                                                                    ttCTGCTTTAATGCTCTCCAGCACCATAATCGCGCCTTGAGAGAAACCGATGAGCGCCGGGGCGTTAGCCCCTCCTCCGCTCTGTTTCTGCCAGTAGCGCACCGTTTCAATAAACGTCGGCATGATCGCATCCACACGCGCCTGGCGAtt                                   <  1:3838883/150‑1 (MQ=255)
                                                                                                                    ttCGGCTTTAATGCTCTCCAGCACCATAATCGCGCCTTGAGAGAAACCGATGAGCGCCGTGGCGTTAGCCCCTACTCCGCTCTGTTTCTGCCAGTAGCGCACCGTTTCAATAAACGTCGGCATGATCGCATCCACACGCGCCTGGCGAtt                                   <  2:2176206/150‑1 (MQ=255)
                                                                                                                    ttCGGCTTTAATGCTCTCCAGCACCATAATCGCGCCTTGAGAGAAACCGATGAGCGCCGTGGCGTTAGCCCCTACTCCGCTCTGTTTCTGCCAGTAGCGCACCGTTTCAATAAACGTCGGCATGATCGCATCCACACGCGCCTGGCGAtt                                   <  1:2974248/150‑1 (MQ=255)
                                                                                                                         cTTTAATGCTCTCCAGCACCATAATCGCTCCTTGAGAGAAACCGATGAGCGCCGTGGCGTTAGCCCCTACTCCGCTCTGTTTCTGCCAGTAGCGCACCGTTTCAATAAACGTCGGCATGATCGCATCCACACGCGCCTGGCGATTATCtt                              <  2:4277700/150‑1 (MQ=255)
                                                                                                                         cTTTAATGCTCTCCAGCACCATAATCGCGCCTTGAGAGAAACCGATGAGCGCCGTGGCGTTAGCCCCTACTCCGCTCTGTTTCTGCCAGTAGCGCACCGTTTCAATAAACGTCGGCATGATCGCATCCACACGCGCCTGGCGATTATCtt                              <  2:4003088/150‑1 (MQ=255)
                                                                                                                          tttAATGCTCTCCAGCACCATAATCGCGCCTTGAGAGAAACCGATGAGCGCCGTGGCGTTAGCCCCTACTCCGCTCTGTTTCTGCCAGTAGCGCACCGTTTCAATAAACGTCGGCATGATCGCATCCACACGCGCCTGGCGATTATCTTc                             >  1:543264/1‑150 (MQ=255)
                                                                                                                          tttAATGCTCTCCAGCACCATAATCGCGCCTTGAGAGAAACCGATGAGCGCCGTGGCGTTAGCCCCTACTCCGCTCTGTTTCTGCCAGTAGCGCACCGTTTCAATAAACGTCGGCATGATCGCATCCACACGCGCCTGGCGATTATCTTc                             >  1:2714678/1‑150 (MQ=255)
                                                                                                                          tttAATGCTCTCCAGCACCATAATCGCGCCTTGAGAGAAACCGATGAGCGCCGTGGCGTTAGCCCCTACTCCGCTCTGTTTCTGCCAGTAGCGCACCGTTTCAATAAACGTCGGCATGATCGCATCCACACGCGCCTGGCGATTATCTTc                             <  1:2095703/150‑1 (MQ=255)
                                                                                                                              aTGCTCTCCAGCACCATAATCGCGCCTTGAGAGAAACCGATGAGCGCCGTGGCGTTAGCCCCTACTCCGCTCTGTTTCTGCCAGTAGCGCACCGTTTCAATAAACGTCGGCATGATCGCATCCACACGCGCCTGGCGATTATCTTCCGTa                         <  1:3262101/150‑1 (MQ=255)
                                                                                                                              aTGCTCTCCAGCACCATAATCGCGCCTTGAGAGAAACCGATGAGCGCCGTGGCGTTAGCCCCTACTCCGCTCTGTTTCTGCCAGTAGCGCACCGTTTCAATAAACGTCGGCATGATCGCATCCACACGCGCCTGGCGATTATCTTCCGTa                         >  1:4060634/1‑150 (MQ=255)
                                                                                                                              aTGCTCTCCAGCACCATAATCGCGCCTTGAGAGAAACCGATGAGCGCCGTGGCGTTAGCCCCTACTCCGCTCTGTTTCTGCCAGTAGCGCACCGTTTCAATAAACGTCGGCATGATCGCATCCACACGCGCCTGGCGATTATCTTCCGTa                         <  2:1834626/150‑1 (MQ=255)
                                                                                                                              aTGCTCTCCAGCACCATAATCGCGCCTTGAGAGAAACCGATGAGCGCCGTGGCGTGAGCCCCTACTCCGCTCTGTTTCTGCCAGTAGCGCACCGTTTCAATAAACGTCGGCATGATCGCATCCACACGCGCCTGGCGATTATCTTCCGTa                         <  2:3273868/150‑1 (MQ=255)
                                                                                                                               tGCTCTCCAGCACCATACTCGCGCCTTGAGAGAAACCGATGAGCGCCGTGGCGTTAGCCCCTACTCCGCTCTGTTTCTGCCAGTAGCGCACCGTTTCAATAAACGTCGGCATGATCGCATCCACACGCGCCTGGCGATTATCTTCCGTaa                        <  2:2302944/150‑1 (MQ=255)
                                                                                                                                gCTCTCCAGCACCATAATCGCGCCTTGAGAGAAACCGATGAGCGCCGTGGCGTTAGCCCCTACTCCGCTCTGTTTCTGCCAGTAGCGCACCGTTTCAATAAACGTCGGCATGATCGCATCCACACGCGCCTGGCGATTATCTTCCGTAAt                       <  2:2188470/150‑1 (MQ=255)
                                                                                                                                gCTCTCCAGCACCATAATCGCGCCTTGAGAGAAACCGATGAGCGCCGTGGCGTTAGCCCCTACTCCGCTCTGTTTCTGCCAGTAGCGCACCGTTTCAATAAACGTCGGCATGATCGCATCCACACGCGCCTGGCGATTATCTTCCGTAAt                       <  1:2151457/150‑1 (MQ=255)
                                                                                                                                  tctcCAGCACCATAATCGCTCCTTGAGAGAAACCGATGAGCGCCGTGGCGTTAGCCCCTACTCCGCTCTGTTTCTGCCAGTAGCGCACCGTTTCAATAAACGTCGGCATGATCGCATCCACACGCGCCTGGCGATTATCTTCCGTAATAc                     >  1:1529524/1‑150 (MQ=255)
                                                                                                                                   ctcCAGCACCATAATCGCGCCTTGAGAGAAACCGATGAGCGCCGTGGCGTTAGCCCCTACTCCGCTCTGTTTCTGCCAGTAGCGCACCGTTTCAATAAACGTCGGCATGATCGCATCCACACGCGCCTGGCGATTATCTTCCGTAATAcc                    >  2:1270954/1‑150 (MQ=255)
                                                                                                                                      cAGCACCATAATCGCTCCTTGAGAGAAACCGATGAGCGCCGTGGCGTTAGCCCCTACTCCGCTCTGTTTCTGCCAGTAGCGCACCGTTTCAATAAACGTCGGCATGATCGCATCCACACGCGCCTGGCGATTATCTTCCGTAATACCCTg                 >  1:3326100/1‑150 (MQ=255)
                                                                                                                                          aCCATAATCGCGCCTTGAGAGAAACCGATGAGCGCCGTGGCGTTAGCCCCTACTCCGCTCTGTTTCTGCCAGTAGCGCACCGTTTCAATAAACGTCGGCATGATCGCATCCACACGCGCCTGGCGATTATCTTCCGTAATACCCTGCAcc             <  2:3950875/150‑1 (MQ=255)
                                                                                                                                           ccATAATCGCTCCTTGAGAGAAACCGATGAGCGCCGTGGCGTTAGCCCCTACTCCGCTCTGTTTCTGCCAGTAGCGCACCGTTTCAATAAACGTCGGCATGATCGCATCCACACGCGCCTGGCGATTATCTTCCGTAATACCCTGCACCg            <  1:3195968/150‑1 (MQ=255)
                                                                                                                                               aaTCGCGCCTTGAGAGAAACCGATGAGCGCCGTGGCGTTAGCCCCTACTCCGCTCTGTTTCTGCCAGTAGCGCACCGTTTCAATAAACGTCGGCATGATCGCATCCACACGCGCCTGGCGATTATCTTCCGTAATACCCTGCACCGaaaa        >  2:3391909/1‑150 (MQ=255)
                                                                                                                                                aTCGCGCCTTGAGAGAAACCGATGAGCGCCGTGGCGTTAGCCCCTACTCCGCTCTGTTTCTGCCAGTAGCGCACCGTTTCAATAAACGTCGGCATGATCGCATCCACACGCGCCTGGCGATTATCTTCCGTAATACCCTGCACCGAAAAc       <  2:101722/150‑1 (MQ=255)
                                                                                                                                                 tCGCTCCTTGAGAGAAACCGATGAGCGCCGTGGCGTTAGCCCCTACTCCGCTCTGTTTCTGCCAGTAGCGCACCGTTTCAATAAACGTCGGCATGATCGCATCCACACGCGCCTGGCGATTATCTTCCGTAATACCCTGCACCGAAAAcc      >  2:3750913/1‑150 (MQ=255)
                                                                                                                                                 tCGCGCCTTGAGAGAAACCGATGAGCGCCGTGGCGTTAGCCCCTACTCCGCTCTGTTTCTGCCAGTAGCGCACCGTTTCAATAAACGTCGGCATGATCGCATCCACACGCGCCTGGCGATTATCTTCCGTAATACCCTGCACCGAAAAcc      >  1:1731246/1‑150 (MQ=255)
                                                                                                                                                  cgcgCCTTGAGAGAAACCGATGAGCGCCGTGGCGTTAGCCCCTACTCCGCTCTGTTTCTGCCAGTAGCGCACCGTTTCAATAAACGTCGGCATGATCGCATCCACACGCGCCTGGCGATTATCTTCCGTAATACCCTGCACCGAAAACCa     >  2:4120352/1‑150 (MQ=255)
                                                                                                                                                    cgcCTTGAGAGAAACCGATGAGCGCCGTGGCGTTAGCCCCTACTCCGCTCTGTTTCTGCCAGTAGCGCACCGTTTCAATAAACGTCGGCATGATCGCATCCACACGCGCCTGGCGATTATCTTCCGTAATACCCTGCACCGAAAACCACt   <  2:163420/150‑1 (MQ=255)
                                                                                                                                                     gcCTTGAGAGAAACCGATGAGCGCCGTGGCGTTAGCCCCTACTCCGCTCTGTTTCTGCCAGTAGCGCACCGTTTCAATAAACGTCGGCATGATCGCATCCACACGCGCCTGGCGATTATCTTCCGTAATACCCTGCACCGAAAACCACTg  >  2:2109366/1‑150 (MQ=255)
                                                                                                                                                     |                                                                                                                                                     
TCGATAACCGGATCTTCACCGCCATGAATCAGGTGAATTGTCGTGGCTGTAGACGCAGTTTCCGGCAGGCTCGCATAGCGTCCGTTAAAAGCAATGACGCGTGAAGCAAGGCCCGGTTCGGCTTTAATGCTCTCCAGCACCATAATCGCGCCTTGAGAGAAACCGATGAGCGCCGTGGCGTTAGCCCCTACTCCGCTCTGTTTCTGCCAGTAGCGCACCGTTTCAATAAACGTCGGCATGATCGCATCCACACGCGCCTGGCGATTATCTTCCGTAATACCCTGCACCGAAAACCACTG  >  CP009273/2586642‑2586940

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A