Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F204 I0 R1 1155 255.8 8356456 95.7% 7997128 150.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP009273 2,586,791 G→T 39.7% G113G (GGC→GGA)  ypfH ← palmitoyl‑CoA esterase activity, uncertain physiological substrate

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0092732,586,7910GT39.7% 297.2 / 277.1 242G113G (GGC→GGA) ypfHpalmitoyl‑CoA esterase activity, uncertain physiological substrate
Reads supporting (aligned to +/- strand):  ref base G (84/62);  new base T (56/39);  total (141/101)
Fisher's exact test for biased strand distribution p-value = 8.94e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.98e-01

Only 100 of 248 total aligned reads displayed.

TCGATAACCGGATCTTCACCGCCATGAATCAGGTGAATTGTCGTGGCTGTAGACGCAGTTTCCGGCAGGCTCGCATAGCGTCCGTTAAAAGCAATGACGCGTGAAGCAAGGCCCGGTTCGGCTTTAATGCTCTCCAGCACCATAATCGCGCCTTGAGAGAAACCGATGAGCGCCGTGGCGTTAGCCCCTACTCCGCTCTGTTTCTGCCAGTAGCGCACCGTTTCAATAAACGTCGGCATGATCGCATCCACACGCGCCTGGCGATTATCTTCCGTAATACCCTGCACCGAAAACCACTG  >  CP009273/2586642‑2586940
                                                                                                                                                     |                                                                                                                                                     
tCGATAACCGGATCTTCACCGCCATGAATCAGGTGAATTGTCGTGGCTGTAGACGCAGTTTCCGGCAGGCTCGCATAGCGTCCGTTAAAAGCAATGACGCGTGAAGCAAGGCCCGGTTCGGCTTTAATGCTCTCCAGCACCATAATcgcg                                                                                                                                                       <  1:510258/150‑1 (MQ=255)
  gATAACCGGATCTTCACCGCCATGAATCAGGTGAATTGTCGTGGCTGTAGACGCAGTTTCCGGCAGGCTCGCATAGCGTCCGTTAAAAGCAATGACGCGTGAAGCAAGGCCCGGTTCGGCTTTAATGCTCTCCAGCACCATAATCGCGcc                                                                                                                                                     >  1:3863086/1‑150 (MQ=255)
  gATAACCGGATCTTCACCGCCATGAATCAGGTGAATTGTCGTGGCTGTAGACGCAGTTTCCGGCAGGCTCGCATAGCGTCCGTTAAAAGCAATGACGCGTGAAGCAAGGCCCGGTTCGGCTTTAATGCTCTCCAGCACCATAATCGCGcc                                                                                                                                                     >  2:2438810/1‑150 (MQ=255)
   aTAACCGGATCTTCACCGCCATGAATCAGGTGAATTGTCGTGGCTGTAGACGCAGTTTCCGGCAGGCTCGCATAGCGTCCGTTAAAAGCAATGACGCGTGAAGCAAGGCCCGGTTCGGCTTTAATGCTCTCCAGCACCATAATCGCGCCt                                                                                                                                                    <  2:3128811/150‑1 (MQ=255)
    tAACCGGATCTTCACCGCCATGAATCAGGTGAATTGTCGTGGCTGTAGACGCAGTTTCCGGCAGGCTCGCATAGCGTCCGTTAAAAGCAATGACGCGTGAAGCAAGGCCCGGTTCGGCTTTAATGCTCTCCAGCACCATAATCGCTCCtt                                                                                                                                                   <  1:1515310/150‑1 (MQ=255)
     aaCCGGATCTTCACCGCCATGAATCAGGTGAATTGTCGTGGCTGTAGACGCAGTTTCCGGCAGGCTCGCATAGCGTCCGTTAAAAGCAATGACGCGTGAAGCAAGGCCCGGTTCGGCTTTAATGCTCTCCAGCACCATAATCGCGCCTTg                                                                                                                                                  <  1:1015984/150‑1 (MQ=255)
      aCCGGATCTTCACCGCCATGAATCAGGTGAATTGTCGTGGCTGTAGACGCAGTTTCCGGCAGGCTCGCATAGCGTCCGTTAAAAGCAATGACGCGTGAAGCAAGGCCCGGTTCGGCTTTAATGCTCTCCAGCACCATAATCGCTCCTTga                                                                                                                                                 <  1:1330225/150‑1 (MQ=255)
            tCTTCACCGCCATGAATCAGGTGAATTGTCGTGGCTGTAGACGCAGTTTCCGGCAGGCTCGCATAGCGTCCGTTAAAAGCAATGACGCGTGAAGCAAGGCCCGGTTCGGCTTTAATGCTCTCCAGCACCATAATCGCTCCTTGAGAGaaa                                                                                                                                           >  2:682276/1‑150 (MQ=255)
             cTTCACCGCCATGAATCAGGTGAATTGTCGTGGCTGTAGACGCAGTTTCCGGCAGGCTCGCATAGCGTCCGTTAAAAGCAATGACGCGTGAAGCAAGGCCCGGTTCGGCTTTAATGCTCTCCAGCACCATAATCGCTCCTTGAGAGAAAc                                                                                                                                          >  1:1234383/1‑150 (MQ=255)
             cTTCACCGCCATGAATCAGGTGAATTGTCGTGGCTGTAGACGCAGTTTCCGGCAGGCTCGCATAGCGTCCGTTAAAAGCAATGACGCGTGAAGCAAGGCCCGGTTCGGCTTTAATGCTCTCCAGCACCATAATCGCGCCTTGAGAGAAAc                                                                                                                                          >  1:2696834/1‑150 (MQ=255)
             cTTCACCGCCATGAATCAGGTGAATTGTCGTGGCTGTAGACGCAGTTTCCGGCAGGCTCGCATAGCGTCCGTTAAAAGCAATGACGCGTGAAGCAAGGCCCGGTTCGGCTTTAATGCTCTCCAGCACCATAATCGCGCCTTGAGAGAAAc                                                                                                                                          >  1:3125349/1‑150 (MQ=255)
              ttCACCGCCATGAATCAGGTGAATTGTCGTGGCTGTAGACGCAGTTTCCGGCAGGCTCGCATAGCGTCCGTTAAAAGCAATGACGCGTGAAGCAAGGCCCGGTTCGGCTTTAATGCTCTCCAGCACCATAATCGCGCCTTGAGAGAAAcc                                                                                                                                         <  1:3796702/150‑1 (MQ=255)
               tCACCGCCATGAATCAGGTGAATTGTCGTGGCTGTAGACGCAGTTTCCGGCAGGCTCGCATAGCGTCCGTTAAAAGCAATGACGCGTGAAGCAAGGCCCGGTTCGGCTTTAATGCTCTCCAGCACCATAATCGCTCCTTGAGAGAAACCg                                                                                                                                        <  1:2564308/150‑1 (MQ=255)
                cACCGCCATGAATCAGGTGAATTGTCGTGGCTGTAGACGCAGTTTCCGGCAGGCTCGCATAGCGTCCGTTAAAAGCAATGACGCGTGAAGCAAGGCCCGGTTCGGCTTTAATGCTCTCCAGCACCATAATCGCGCCTTGAGAGAAACCGa                                                                                                                                       <  1:1372264/150‑1 (MQ=255)
                     ccATGAATCAGGTGAATTGTCGTGGCTGTAGACGCAGTTTCCGGCAGGCTCGCATAGCGTCCGTTAAAAGCAATGACGCGTGAAGCAAGGCCCGGTTCGGCTTTAATGCTCTCCAGCACCATAATCGCTCCTTGAGAGAAACCGATGAgc                                                                                                                                  <  2:2930975/150‑1 (MQ=255)
                         gAATCAGGTGAATTGTCGTGGCTGTAGACGCAGTTTCCGGCAGGCTCGCATAGCGTCCGTTAAAAGCAATGACGCGTGAAGCAAGGCCCGGTTCGGCTTTAATGCTCTCCAGCACCATAATCGCTCCTTGAGAGAAACCGATGAGCGCCg                                                                                                                              >  2:234305/1‑150 (MQ=255)
                         gAATCAGGTGAATTGTCGTGGCTGTAGACGCAGTTTCCGGCAGGCTCGCATAGCGTCCGTTAAAAGCAATGACGCGTGAAGCAAGGCCCGGTTCGGCTTTAATGCTCTCCAGCACCATAATCGCTCCTTGAGAGAAACCGATGAGCGCCg                                                                                                                              >  1:3546531/1‑150 (MQ=255)
                          aaTCAGGTGAATTGTCGTGGCTGTAGACGCAGTTTCCGGCAGGCTCGCATAGCGTCCGTTAAAAGCAATGACGCGTGAAGCAAGGCCCGGTTCGGCTTTAATGCTCTCCAGCACCATAATCGCGCCTTGAGAGAAACCGATGAGCGCCGt                                                                                                                             <  2:2638654/150‑1 (MQ=255)
                           aTCAGGTGAATTGTCGTGGCTGTAGACGCAGTTTCCGGCAGGCTCGCATAGCGTCCGTTAAAAGCAATGACGCGTGAAGCAAGGCCCGGTTCGGCTTTAATGCTCTCCAGCACCATAATCGCGCCTTGAGAGAAACCGATGAGCGCCGTg                                                                                                                            <  2:3869694/150‑1 (MQ=255)
                                gTGAATTGTCGTGGCTGTAGACGCAGTTTCCGGCAGGCTCGCATAGCGTCCGTTAAAAGCAATGACGCGTGAAGCAAGGCCCGGTTCGGCTTTAATGCTCTCCAGCACCATAATCGCGCCTTGAGAGAAACCGATGAGCGCCGTGGCGtt                                                                                                                       >  2:2878355/1‑150 (MQ=255)
                                 tGAATTGTCGTGGCTGTAGACGCAGTTTCCGGCAGGCTCGCATAGCGTCCGTTAAAAGCAATGACGCGTGAAGCAAGGCCCGGTTCGGCTTTAATGCTCTCCAGCACCATAATCGCGCCTTGAGAGAAACCGATGAGCGCCGTGGCGTTa                                                                                                                      <  2:1130494/150‑1 (MQ=255)
                                 tGAATTGTCGTGGCTGTAGACGCAGTTTCCGGCAGGCTCGCATAGCGTCCGTTAAAAGCAATGACGCGTGAAGCAAGGCCCGGTTCGGCTTTAATGCTCTCCAGCACCATAATCGCGCCTTGAGAGAAACCGATGAGCGCCGTGGCGTTa                                                                                                                      <  2:3292724/150‑1 (MQ=255)
                                       gTCGTGGCTGTAGACGCAGTTTCCGGCAGGCTCGCATAGCGTCCGTTAAAAGCAATGACGCGTGAAGCAAGGCCCGGTTCGGCTTTAATGCTCTCCAGCACCATAATCGCTCCTTGAGAGAAACCGATGAGCGCCGTGGCGTTAGCCCCt                                                                                                                >  2:800011/1‑150 (MQ=255)
                                         cGTGGCTGTAGACGCAGTTTCCGGCAGGCTCGCATAGCGTCCGTTAAAAGCAATGACGCGTGAAGCAAGGCCCGGTTCGGCTTTAATGCTCTCCAGCACCATAATCGCGCCTTGAGAGAAACCGATGAGCGCCGTGGCGTTAGCCCCTAc                                                                                                              >  1:1100629/1‑150 (MQ=255)
                                         cGTGGCTGTAGACGCAGTTTCCGGCAGGCTCGCATAGCGTCCGTTAAAAGCAATGACGCGTGAAGCAAGGCCCGGTTCGGCTTTAATGCTCTCCAGCACCATAATCGCGCCTTGAGAGAAACCGATGAGCGCCGTGGCGTTAGCCCCTAc                                                                                                              <  1:3952902/150‑1 (MQ=255)
                                                 tAGACGCAGTTTCCGGCAGGCTCGCATAGCGTCCGTTAAAAGCAATGACGCGTGAAGCAAGGCCCGGTTCGGCTTTAATGCTCTCCAGCACCATAATCGCTCCTTGAGAGAAACCGATGAGCGCCGTGGCGTTAGCCCCTACTCCGctct                                                                                                      <  2:582479/150‑1 (MQ=255)
                                                  aGACGCAGTTTCCGGCAGGCTCGCATAGCGTCCGTTAAAAGCAATGACGCGTGAAGCAAGGCCCGGTTCGGCTTTAATGCTCTCCAGCACCATAATCGCGCCTTGAGAGAAACCGATGAGCGCCGTGGCGTTAGCCCCTACTCCGCTCTg                                                                                                     <  1:79561/150‑1 (MQ=255)
                                                     cGCAGTTTCCGGCAGGCTCGCATAGCGTCCGTTAAAAGCAATGACGCGTGAAGCAAGGCCCGGTTCGGCTTTAATGCTCTCCAGCACCATAATCGCGCCTTGAGAGAAACCGATGAGCGCCGTGGCGTTAGCCCCTACTCCGCTCTGttt                                                                                                  <  2:3500191/150‑1 (MQ=255)
                                                     cGCAGTTTCCGGCAGGCTCGCATAGCGTCCGTTAAAAGCAATGACGCGTGAAGCAAGGCCCGGTTCGGCTTTAATGCTCTCCAGCACCATAATCGCGCCTTGAGAGAAACCGATGAGCGCCGTGGCGTTAGCCCCTACTCCGCTCTGttt                                                                                                  >  2:2281387/1‑150 (MQ=255)
                                                      gCAGTTTCCGGCAGGCTCGCATAGCGTCCGTTAAAAGCAATGACGCGTGAAGCAAGGCCCGGTTCGGCTTTAATGCTCTCCAGCACCATAATCGCTCCTTGAGAGAAACCGATGAGCGCCGTGGCGTTAGCCCCTACTCCGCTCTGTTTc                                                                                                 <  2:3849745/150‑1 (MQ=255)
                                                      gCAGTTTCCGGCAGGCTCGCATAGCGTCCGTTAAAAGCAATGACGCGTGAAGCAAGGCCCGGTTCGGCTTTAATGCTCTCCAGCACCATAATCGCTCCTTGAGAGAAACCGATGAGCGCCGTGGCGTTAGCCCCTACTCCGCTCTGTTTc                                                                                                 <  2:272721/150‑1 (MQ=255)
                                                       cAGTTTCCGGCAGGCTCGCATAGCGTCCGTTAAAAGCAATGACGCGTGAAGCAAGGCCCGGTTCGGCTTTAATGCTCTCCAGCACCATAATCGCGCCTTGAGAGAAACCGATGAGCGCCGTGGCGTTAGCCCCTACTCCGCTCTGTTTCt                                                                                                >  1:1013652/1‑150 (MQ=255)
                                                         gTTTCCGGCAGGCTCGCATAGCGTCCGTTAAAAGCAATGACGCGTGAAGCAAGGCCCGGTTCGGCTTTAATGCTCTCCAGCACCATAATCGCTCCTTGAGAGAAACCGATGAGCGCCGTGGCGTTAGCCCCTACTCCGCTCTGTTTCTGc                                                                                              >  1:1764554/1‑150 (MQ=255)
                                                          tttCCGGCAGGCTCGCATAGCGTCCGTTAAAAGCAATGACGCGTGAGGCAAGGCCCGGTTCGGCTTTAATGCTCTCCAGCACCATAATCGCTCCTTGAGAGAAACCGATGAGCGCCGTGGCGTTAGCCCCTACTCCGCTCTGTTTCTGcc                                                                                             >  1:1852636/1‑150 (MQ=255)
                                                            tCCGGCAGGCTCGCATAGCGTCCGTTAAAAGCAATGACGCGTGAAGCAAGGCCCGGTTCGGCTTTAATGCTCTCCAGCACCATAATCGCTCCTTGAGAGAAACCGATGAGCGCCGTGGCGTTAGCCCCTACTCCGCTCTGTTTCTGCCAg                                                                                           >  2:1521076/1‑150 (MQ=255)
                                                             ccGGCAGGCTCGCATAGCGTCCGTTAAAAGCAATGACGCGTGAAGCAAGGCCCGGTTCGGCTTTAATGCTCTCCAGCACCATAATCGCTCCTTGAGAGAAACCGATGAGCGCCGTGGCGTTAGCCCCTACTCCGCTCTGTTTCTGCCAGt                                                                                          <  1:2299618/150‑1 (MQ=255)
                                                              cGGCAGGCTCGCATAGCGTCCGTTAAAAGCAATGACGCGTGAAGCAAGGCCCGGTTCGGCTTTAATGCTCTCCAGCACCATAATCGCTCCTTGAGAGAAACCGATGAGCGCCGTGGCGTTAGCCCCTACTCCGCTCTGTTTCTGCCAGTa                                                                                         >  1:452709/1‑150 (MQ=255)
                                                              cGGCAGGCTCGCATAGCGTCCGTTAAAAGCAATGACGCGTGAAGCAAGGCCCGGTTCGGCTTTAATGCTCTCCAGCACCATAATCGCGCCTTGAGAGAAACCGATGAGCGCCGTGGCGTTAGCCCCTACTCCGCTCTGTTTCTGCCAGTa                                                                                         <  1:3252112/150‑1 (MQ=255)
                                                               ggCAGGCTCGCATAGCGTCCGTTAAAAGCAATGACGCGTGAAGCAAGGCCCGGTTCGGCTTTAATGCTCTCCAGCACCATAATCGCTCCTTGAGAGAAACCGATGAGCGCCGTGGCGTTAGCCCCTACTCCGCTCTGTTTCTGCCAGTAg                                                                                        >  1:1903793/1‑150 (MQ=255)
                                                                 cAGGCTCGCATAGCGTCCGTTAAAAGCAATGACGCGTGAAGCAAGGCCCGGTTCGGCTTTAATGCTCTCCAGCACCATAATCGCGCCTTGAGAGAAACCGATGAGCGCCGTGGCGTTAGCCCCTACTCCGCTCTGTTTCTGCCAGTAgcg                                                                                      >  1:3157955/1‑150 (MQ=255)
                                                                  aGGCTCGCATAGCGTCCGTTAAAAGCAATGACGCGTGAAGCAAGGCCCGGTTCGGCTTTAATGCTCTCCAGCACCATAATCGCGCCTTGAGAGAAACCGATGAGCGCCGTGGCGTTAGCCCCTACTCCGCTCTGTTTCTGCCAGTAgcgc                                                                                     >  1:2215478/1‑150 (MQ=255)
                                                                      tCGCATAGCGTCCGTTAAAAGCAATGACGCGTGAAGCAAGGCCCGGTTCGGCTTTAATGCTCTCCAGCACCATAATCGCGCCTTGAGAGAAACCGATGAGCGCCGTGGCGTTAGCCCCTACTCCGCTCTGTTTCTGCCAGTAGCGCACCg                                                                                 <  2:1681543/150‑1 (MQ=255)
                                                                      tCGCATAGCGTCCGTTAAAAGCAATGACGCGTGAAGCAAGGCCCGGTTCGGCTTTAATGCTCTCCAGCACCATAATCGCGCCTTGAGAGAAACCGATGAGCGCCGTGGCGTTAGCCCCTACTCCGCTCTGTTTCTGCCAGTAGCGCACCg                                                                                 <  2:3780176/150‑1 (MQ=255)
                                                                        gCATAGCGTCCGTTATAAGCAATGACTCGTGATGCAAGGCCCGGTTCGGCTTTAATGCTCTCCAGCACCATAATCGCGCATTGAGAGAAACCGATGAGCGCCGTGGCGTTAGCCCCTACTCCGCTCTGTTTCTGCCAGTAGCGCACCGtt                                                                               <  2:1034058/150‑1 (MQ=255)
                                                                        gCATAGCGTCCGTTAAAAGCAATGACGCGTGAAGCAAGGCCCGGTTCGGCTTTAATGCTCTCCAGCACCATAATCGCTCCTTGAGAGAAACCGATGAGCGCCGTGGCGTTAGCCCCTACTCCGCTCTGTTTCTGCCAGTAGCGCACCGtt                                                                               >  1:1438225/1‑150 (MQ=255)
                                                                        gCATAGCGTCCGTTAAAAGCAATGACGCGTGAAGCAAGGCCCGGTTCGGCTTTAATGCTCTCCAGCACCATAATCGCTCCTTGAGAGAAACCGATGAGCGCCGTGGCGTTAGCCCCTACTCCGCTCTGTTTCTGCCAGTAGCGCACCGtt                                                                               >  1:614411/1‑150 (MQ=255)
                                                                          aTAGCGTCCGTTAAAAGCAATGACGCGTGAAGCAAGGCCCGGTTCGGCTTTAATGCTCTCCAGCACCATAATCGCTCCTTGAGAGAAACCGATGAGCGCCGTGGCGTTAGCCCCTACTCCGCTCTGTTTCTGCCAGTAGCGCACCGTTTc                                                                             >  1:4170314/1‑150 (MQ=255)
                                                                          aTAGCGTCCGTTAAAAGCAATGACGCGTGAAGCAAGGCCCGGTTCGGCTTTAATGCTCTCCAGCACCATAATCGCTCCTTGAGAGAAACCGATGAGCGCCGTGGCGTTAGCCCCTACTCCGCTCTGTTTCTGCCAGTAGCGCACCGTTTc                                                                             <  1:653161/150‑1 (MQ=255)
                                                                            aGCGTCCGTTAAAAGCAATGACGCGTGAAGCAAGGCCCGGTTCGGCTTTAATGCTCTCCAGCACCATAATCGCGCCTTGAGAGAAACCGATGAGCGCCGTGGCGTTAGCCCCTACTCCGCTCTGTTTCTGCCAGTAGCGCACCGTTTCaa                                                                           >  1:2454318/1‑150 (MQ=255)
                                                                            aGCGTCCGTTAAAAGCAATGACGCGTGAAGCAAGGCCCGGTTCGGCTTTAATGCTCTCCAGCACCATAATCGCGCCTTGAGAGAAACCGATGAGCGCCGTGGCGTTAGCCCCTACTCCGCTCTGTTTCTGCCAGTAGCGCACCGTTTCaa                                                                           >  2:3082545/1‑150 (MQ=255)
                                                                                tCCGTTAAAAGCAATGACGCGTGAAGCAAGGCCCGGTTCGGCTTTAATGCTCTCCAGCACCATAATCGCTCCTTGAGAGAAACCGATGAGCGCCGTGGCGTTAGCCCCTACTCCGCTCTGTTTCTGCCAGTAGCGCACCGTTTCAATaaa                                                                       >  2:2135366/1‑150 (MQ=255)
                                                                                tCCGTTAAAAGCAATGACGCGTGAAGCAAGGCCCGGTTCGGCTTTAATGCTCTCCAGCACCATAATCGCTCCTTGAGAGAAACCGATGAGCGCCGTGGCGTTAGCCCCTACTCCGCTCTGTTTCTGCCAGTAGCGCACCGTTTCAATaaa                                                                       <  1:2452395/150‑1 (MQ=255)
                                                                                 ccGTTAAAAGCAATGACGCGTGAAGCAAGGCCCGGTTCGGCTTTAATGCTCTCCAGCACCATAATCGCTCCTTGAGAGAAACCGATGAGCGCCGTGGCGTTAGCCCCTACTCCGCTCTGTTTCTGCCAGTAGCGCACCGTTTCAATAAAc                                                                      >  2:2461505/1‑150 (MQ=255)
                                                                                     tAAAAGCAATGACGCGTGAAGCAAGGCCCGGTTCGGCTTTAATGCTCTCCAGCACCATAATCGCTCCTTGAGAGAAACCGATGAGCGCCGTGGCGTTAGCCCCTACTCCGCTCTGTTTCTGCCAGTAGCGCACCGTTTCAATAAACGTCg                                                                  <  2:3335910/150‑1 (MQ=255)
                                                                                       aaaGCAATGACGCGTGAAGCAAGGCCCGGTTCGGCTTTAATGCTCTCCAGCACCATAATCGCTCCTTGAGAGAAACCGATGAGCGCCGTGGCGTTAGCCCCTACTCCGCTCTGTTTCTGCCAGTAGCGCACCGTTTCAATAAACGTCGGc                                                                >  2:148021/1‑150 (MQ=255)
                                                                                        aaGCAATGACGCGTGAAGCAAGGCCCGGTTCGGCTTTAATGCTCTCCAGCACCATAATCGCGCCTTGAGAGAAACCGATGAGCGCCGTGGCGTTAGCCCCTACTCCGCTCTGTTTCTGCCAGTAGCGCACCGTTTCAATAAACGTCGGCa                                                               >  1:3982323/1‑150 (MQ=255)
                                                                                         aGCAATGACGCGTGAAGCAAGGCCCGGTTCGGCTTTAATGCTCTCCAGCACCATAATCGCTCCTTGAGAGAAACCGATGAGCGCCGTGGCGTTAGCCCCTACTCCGCTCTGTTTCTGCCAGTAGCGCACCGTTTCAATAAACGTCGGCAt                                                              >  2:452415/1‑150 (MQ=255)
                                                                                         aGCAATGACGCGTGAAGCAAGGCCCGGTTCGGCTTTAATGCTCTCCAGCACCATAATCGCTCCTTGAGAGAAACCGATGAGCGCCGTGGCGTTAGCCCCTACTCCGCTCTGTTTCTGCCAGTAGCGCACCGTTTCAATAAACGTCGGCAt                                                              <  1:3296017/150‑1 (MQ=255)
                                                                                         aGCAATGACGCGTGAAGCAAGGCCCGGTTCGGCTTTAATGCTCTCCAGCACCATAATCGCTCCTTGAGAGAAACCGATGAGCGCCGTGGCGTTAGCCCCTACTCCGCTCTGTTTCTGCCAGTAGCGCACCGTTTCAATAAACGTCGGCAt                                                              >  2:3435650/1‑150 (MQ=255)
                                                                                         aGCAATGACGCGTGAAGCAAGGCCCGGTTCGGCTTTAATGCTCTCCAGCACCATAATCGCGCCTTGAGAGAAACCGATGAGCGCCGTGGCGTTAGCCCCTACTCCGCTCTGTTTCTGCCAGTAGCGCACCGTTTCAATAAACGTCGGCAt                                                              >  2:4042060/1‑150 (MQ=255)
                                                                                         aGCAATGACGCGTGAAGCAAGGCCCGGTTCGGCTTTAATGCTCTCCAGCACCATAATCGCGCCTTGAGAGAAACCGATGAGCGCCGTGGCGTTAGCCCCTACTCCGCTCTGTTTCTGCCAGTAGCGCACCGTTTCAATAAACGTCGGCAt                                                              >  2:3533473/1‑150 (MQ=255)
                                                                                            aaTGACGCGTGAAGCAAGGCCCGGTTCGGCTTTAATGCTCTCCAGCACCATAATCGCGCCTTGAGAGAAACCGATGAGCGCCGTGGCGTTAGCCCCTACTCCGCTCTGTTTCTGCCAGTAGCGCACCGTTTCAATAAACGTCGGCATGAt                                                           >  1:4128076/1‑150 (MQ=255)
                                                                                              tGACGCGTGAAGCAAGGCCCGGTTCGGCTTTAATGCTCTCCAGCACCATAATCGCGCCTTGAGAGAAACCGATGAGCGCCGTGGCGTTAGCCCCTACTCCGCTCTGTTTCTGCCAGTAGCGCACCGTTTCAATAAACGTCGGCATGATCg                                                         >  2:549383/1‑150 (MQ=255)
                                                                                              tGACGCGTGAAGCAAGGCCCGGTTCGGCTTTAATGCTCTCCAGCACCATAATCGCGCCTTGAGAGAAACCGATGAGCGCCGTGGCGTTAGCCCCTACTCCGCTCTGTTTCTGCCAGTAGCGCACCGTTTCAATAAACGTCGGCATGATCg                                                         >  2:641334/1‑150 (MQ=255)
                                                                                                 cgcgTGAAGCAAGGCCCGGTTCGGCTTTAATGCTCTCCAGCACCATAATCGCGCCTTGAGAGAAACCGATGAGCGCCGTGGCGTTAGCCCCTACTCCGCTCTGTTTCTGCCAGTAGCGCACCGTTTCAATAAACGTCGGCATGATCGCAt                                                      >  1:2433617/1‑150 (MQ=255)
                                                                                                    gTGAAGCAAGGCCCGGTTCGGCTTTAATGCTCTCCAGCACCATAATCGCGCCTTGAGAGAAACCGATGAGCGCCGTGGCGTTAGCCCCTACTCCGCTCTGTTTCTGCCAGTAGCGCACCGTTTCAATAAACGTCGGCATGATCGCATCca                                                   >  1:913933/1‑150 (MQ=255)
                                                                                                     tGAAGCAAGGCCCGGTTCGGCTTTAATGCTCTCCAGCACCATAATCGCGCCTTGAGAGAAACCGATGAGCGCCGTGGCGTTAGCCCCTACTCCGCTCTGTTTCTGCCAGTAGCGCACCGTTTCAATAAACGTCGGCATGATCGCATCcac                                                  >  2:3365894/1‑150 (MQ=255)
                                                                                                      gAAGCAAGGCCCGGTTCGGCTTTAATGCTCTCCAGCACCATAATCGCTCCTTGAGAGAAACCGATGAGCGCCGTGGCGTTAGCCCCTACTCCGCTCTGTTTCTGCCAGTAGCGCACCGTTTCAATAAACGTCGGCATGATCGCATCcaca                                                 <  1:2904635/150‑1 (MQ=255)
                                                                                                       aaGCAAGGCCCGGTTCGGCTTTAATGCTCTCCAGCACCATAATCGCGCCTTGAGAGAAACCGATGAGCGCCGTGGCGTTAGCCCCTACTCCGCTCTGTTTCTGCCAGTAGCGCACCGTTTCAATAAACGTCGGCATGATCGCATCCacac                                                <  1:131758/150‑1 (MQ=255)
                                                                                                               cccGGTTCGGCTTTAATGCTCTCCAGCACCATAATCGCGCCTTGAGAGAAACCGATGAGCGCCGTGGCGTTAGCCCCTACTCCGCTCTGTTTCTGCCAGTAGCGCACCGTTTCAATAAACGTCGGCATGATCGCATCCACACGCGCCTgg                                        <  1:141311/150‑1 (MQ=255)
                                                                                                                ccGGTTCGGCTTTAATGCTCTCCAGCACCATAATCGCGCCTTGAGAGAAACCGATGAGCGCCGTGGCGTTAGCCCCTACTCCGCTCTGTTTCTGCCAGTAGCGCACCGTTTCAATAAACGTCGGCATGATCGCATCCACACGCGCCTGGc                                       >  1:1121557/1‑150 (MQ=255)
                                                                                                                  ggTTCGGCTTTAATGCTCTCCAGCACCATAATCGCTCCTTGAGAGAAACCGATGAGCGCCGTGGCGTTAGCCCCTACTCCGCTCTGTTTCTGCCAGTAGCGCACCGTTTCAATAAACGTCGGCATGATCGCATCCACACGCGCCTGGCGa                                     <  2:1703755/150‑1 (MQ=255)
                                                                                                                  ggTTCGGCTTTAATGCTCTCCAGCACCATAATCGCGCCTTGAGAGAAACCGATGAGCGCCGTGGCGTTAGCCCCTACTCCGCTCTGTTTCTGCCAGTAGCGCACCGTTTCAATAAACGTCGGCATGATCGCATCCACACGCGCCTGGCGa                                     >  1:1706837/1‑150 (MQ=255)
                                                                                                                  ggTTCGGCTTTAATGCTCTCCAGCACCATAATCGCGCCTTGAGAGAAACCGATGAGCGCCGTGGCGTTAGCCCCTACTCCGCTCTGTTTCTGCCAGTAGCGCACCGTTTCAATAAACGTCGGCATGATCGCATCCACACGCGCCTGGCGa                                     >  1:714125/1‑150 (MQ=255)
                                                                                                                    ttCGGCTTTAATGCTCTCCAGCACCATAATCGCGCCTTGAGAGAAACCGATGAGCGCCGTGGCGTTAGCCCCTACTCCGCTCTGTTTCTGCCAGTAGCGCACCGTTTCAATAAACGTCGGCATGATCGCATCCACACGCGCCTGGCGAtt                                   >  1:1224630/1‑150 (MQ=255)
                                                                                                                     tCGGCTTTAATGCTCTCCAGCACCATAATCGCGCCTTGAGAGAAACCGATGAGCGCCGTGGCGTTAGCCCCTACTCCGCTCTGTTTCTGCCAGTAGCGCACCGTTTCAATAAACGTCGGCATGATCGCATCCACACGCGCCTGGCGATTa                                  >  2:1769415/1‑150 (MQ=255)
                                                                                                                      cGGCTTTAATGCTCTCCAGCACCATAATCGCTCCTTGAGAGAAACCGATGAGCGCCGTGGCGTTAGCCCCTACTCCGCTCTGTTTCTGCCAGTAGCGCACCGTTTCAATAAACGTCGGCATGATCGCATCCACACGCGCCTGGCGATTAt                                 <  2:2120429/150‑1 (MQ=255)
                                                                                                                       ggCTTTAATGCTCTCCAGCACCATAATCGCGCCTTGAGAGAAACCGATGAGCGCCGTGGCGTTAGCCCCTACTCCGCTCTGTTTCTGCCAGTAGCGCACCGTTTCAATAAACGTCGGCATGATCGCATCCACACGCGCCTGGCGATTATc                                >  1:3340872/1‑150 (MQ=255)
                                                                                                                        gCTTTAATGCTCTCCAGCACCATAATCGCTCCTTGAGAGAAACCGATGAGCGCCGTGGCGTTAGCCCCTACTCCGCTCTGTTTCTGCCAGTAGCGCACCGTTTCAATAAACGTCGGCATGATCGCATCCACACGCGCCTGGCGATTATCt                               <  2:1448372/150‑1 (MQ=255)
                                                                                                                              aTGCTCTCCAGCACCATAATCGCGCCTTGAGAGAAACCGATGAGCGCCGTGGCGTTAGCCCCTACTCCGCTCTGTTTCTGCCAGTAGCGCACCGTTTCAATAAACGTCGGCATGATCGCATCCACACGCGCCTGGCGATTATCTTCCGTa                         <  1:2782620/150‑1 (MQ=255)
                                                                                                                               tGCTCTCCAGCACCATAATCGCGCCTTGAGATAAACCGATGAGCGCCGTGGCGTTAGCCCCTACTCCGCTCTGTTTCTGCCAGTAGCGCACCGTTTCAATAAACGTCGGCATGATCGCATCCACACGCGCCTGGCGATTATCTTCCGTaa                        <  2:1940743/150‑1 (MQ=255)
                                                                                                                                gCTCTCCAGCACCATAATCGCGCCTTGAGAGAAACCGATGAGCGCCGTGGCGTTAGCCCCTACTCCGCTCTGTTTCTGCCAGTAGCGCACCGTTTCAATAAACGTCGGCATGATCGCATCCACACGCGCCTGGCGATTATCTTCCGTAAt                       >  1:4099938/1‑150 (MQ=255)
                                                                                                                                 ctctCCAGCACCATAATCGCGCCTTGAGAGAAACCGATGAGCGCCGTGGCGTTAGCCCCTACTCCGCTCTGTTTCTGCCAGTAGCGCACCGTTTCAATAAACGTCGGCATGATCGCATCCACACGCGCCTGGCGATTATCTTCCGTAATa                      <  2:1618356/150‑1 (MQ=255)
                                                                                                                                  tctcCAGCACCATAATCGCGCCTTGAGAGAAACCGATGAGCGCCGTGGCGTTAGCCCCTACTCCGCTCTGTTTCTGCCAGTAGCGCACCGTTTCAATAAACGTCGGCATGATCGCATCCACACGCGCCTGGCGATTATCTTCCGTAATAc                     >  2:745792/1‑150 (MQ=255)
                                                                                                                                     ccAGCACCATAATCGCGCCTTGAGAGAAACCGATGAGCGCCGTGGCGTTAGCCCCTACTCCGCTCTGTTTCTGCCAGTAGCGCACCGTTTCAATAAACGTCGGCATGATCGCATCCACACGCGCCTGGCGATTATCTTCCGTAATACCCt                  <  2:1274921/150‑1 (MQ=255)
                                                                                                                                      cAGCACCATAATCGCGCCTTGAGAGAAACCGATGAGCGCCGTGGCGTTAGCCCCTACTCCGCTCTGTTTCTGCCAGTAGCGCACCGTTTCAATAAACGTCGGCATGATCGCATCCACACGCGCCTGGCGATTATCTTCCGTAATACCCTg                 <  1:294961/150‑1 (MQ=255)
                                                                                                                                         cACCATAATCGCTCCTTGAGAGAAACCGATGAGCGCCGTGGCGTTAGCCCCTACTCCGCTCTGTTTCTGCCAGTAGCGCACCGTTTCAATAAACGTCGGCATGATCGCATCCACACGCGCCTGGCGATTATCTTCCGTAATACCCTGCAc              >  2:1375896/1‑150 (MQ=255)
                                                                                                                                         cACCATAATCGCGCCTTGAGAGAAACCGATGAGCGCCGTGGCGTTAGCCCCTACTCCGCTCTGTTTCTGCCAGTAGCGCACCGTTTCAATAAACGTCGGCATGATCGCATCCACACGCGCCTGGCGATTATCTTCCGTAATACCCTGCAc              <  2:152187/150‑1 (MQ=255)
                                                                                                                                         cACCATAATCGCGCCTTGAGAGAAACCGATGAGCGCCGTGGCGTTAGCCCCTACTCCGCTCTGTTTCTGCCAGTAGCGCACCGTTTCAATAAACGTCGGCATGATCGCATCCACACGCGCCTGGCGATTATCTTCCGTAATACCCTGCAc              >  1:999941/1‑150 (MQ=255)
                                                                                                                                           ccATAATCGCTCCTTGAGAGAAACCGATGAGCGCCGTGGCGTTAGCCCCTACTCCGCTCTGTTTCTGCCAGTAGCGCACCGTTTCAATAAACGTCGGCATGATCGCATCCACACGCGCCTGGCGATTATCTTCCGTAATACCCTGCACCg            <  1:897655/150‑1 (MQ=255)
                                                                                                                                            cATAATCGCTCCTTGAGAGAAACCGATGAGCGCCGTGGCGTTAGCCCCTACTCCGCTCTGTTTCTGCCAGTAGCGCACCGTTTCAATAAACGTCGGCATGATCGCATCCACACGCGCCTGGCGATTATCTTCCGTAATACCCTGCACCGa           >  1:1279469/1‑150 (MQ=255)
                                                                                                                                             aTAATCGCGCCTTGAGAGAAACCGATGAGCGCCGTGGCGTTAGCCCCTACTCCGCTCTGTTTCTGCCAGTAGCGCACCGTTTCAATAAACGTCGGCATGATCGCATCCACACGCGCCTGGCGATTATCTTCCGTAATACCCTGCACCGaa          >  1:1528016/1‑150 (MQ=255)
                                                                                                                                               aaTCGCTCCTTGAGAGAAACCGATGAGCGCCGTGGCGTTAGCCCCTACTCCGCTCTGTTTCTGCCAGTAGCGCACCGTTTCAATAAACGTCGGCATGATCGCATCCACACGCGCCTGGCGATTATCTTCCGTAATACCCTGCACCGaaaa        >  2:3723455/1‑150 (MQ=255)
                                                                                                                                               aaTCGCTCCTTGAGAGAAACCGATGAGCGCCGTGGCGTTAGCCCCTACTCCGCTCTGTTTCTGCCAGTAGCGCACCGTTTCAATAAACGTCGGCATGATCGCATCCACACGCGCCTGGCGATTATCTTCCGTAATACCCTGCACCGaaaa        >  2:1625678/1‑150 (MQ=255)
                                                                                                                                               aaTCGCGCCTTGAGAGAAACCGATGAGCGCCGTGGCGTTAGCCCCTACTCCGCTCTGTTTCTGCCAGTAGCGCACCGTTTCAATAAACGTCGGCATGATCGCATCCACACGCGCCTGGCGATTATCTTCCGTAATACCCTGCACCGaaaa        >  2:1342736/1‑150 (MQ=255)
                                                                                                                                                aTCGCGCCTTGAGAGAAACCGATGAGCGCCGTGGCGTTAGCCCCTACTCCGCTCTGTTTCTGCCAGTAGCGCACCGTTTCAATAAACGTCGGCATGATCGCATCCACACGCGCCTGGCGATTATCTTCCGTAATACCCTGCACCGAAAAc       <  2:2696834/150‑1 (MQ=255)
                                                                                                                                                aTCGCGCCTTGAGAGAAACCGATGAGCGCCGTGGCGTTAGCCCCTACTCCGCTCTGTTTCTGCCAGTAGCGCACCGTTTCAATAAACGTCGGCATGATCGCATCCACACGCGCCTGGCGATTATCTTCCGTAATACCCTGCACCGAAAAc       >  1:1124282/1‑150 (MQ=255)
                                                                                                                                                 tCGCTCCTTGAGAGAAACCGATGAGCGCCGTGGCGTTAGCCCCTACTCCGCTCTGTTTCTGCCAGTAGCGCACCGTTTCAATAAACGTCGGCATGATCGCATCCACACGCGCCTGGCGATTATCTTCCGTAATACCCTGCACCGAAAAcc      <  1:892322/150‑1 (MQ=255)
                                                                                                                                                 tCGCTCCTTGAGAGAAACCGATGAGCGCCGTGGCGTTAGCCCCTACTCCGCTCTGTTTCTGCCAGTAGCGCACCGTTTCAATAAACGTCGGCATGATCGCATCCACACGCGCCTGGCGATTATCTTCCGTAATACCCTGCACCGAAAAcc      <  1:3731480/150‑1 (MQ=255)
                                                                                                                                                    cgcCTTGAGAGAAACCGATGAGCGCCGTGGCGTTAGCCCCTACTCCGCTCTGTTTCTGCCAGTAGCGCACCGTTTCAATAAACGTCGGCATGATCGCATCCACACGCGCCTGGCGATTATCTTCCGTAATACCCTGCACCGAAAACCACt   >  1:2076694/1‑150 (MQ=255)
                                                                                                                                                     |                                                                                                                                                     
TCGATAACCGGATCTTCACCGCCATGAATCAGGTGAATTGTCGTGGCTGTAGACGCAGTTTCCGGCAGGCTCGCATAGCGTCCGTTAAAAGCAATGACGCGTGAAGCAAGGCCCGGTTCGGCTTTAATGCTCTCCAGCACCATAATCGCGCCTTGAGAGAAACCGATGAGCGCCGTGGCGTTAGCCCCTACTCCGCTCTGTTTCTGCCAGTAGCGCACCGTTTCAATAAACGTCGGCATGATCGCATCCACACGCGCCTGGCGATTATCTTCCGTAATACCCTGCACCGAAAACCACTG  >  CP009273/2586642‑2586940

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A