Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A4 F17 I0 R1
|
160 |
98.0 |
2214160 |
89.0% |
1970602 |
222.7 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
647,210 |
A→C |
24.3% |
G100G (GGT→GGG) |
citG ← |
2‑(5''‑triphosphoribosyl)‑3'‑dephosphocoenzyme‑A synthase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 647,210 | 0 | A | C | 24.3%
| 98.7
/ 4.8
| 59 | G100G (GGT→GGG) | citG | 2‑(5''‑triphosphoribosyl)‑3'‑dephosphocoenzyme‑A synthase |
| Reads supporting (aligned to +/- strand): ref base A (34/8); new base C (2/14); total (36/23) |
| Fisher's exact test for biased strand distribution p-value = 2.60e-06 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
GCGCCGGTAAGGCCAAGCTGTTGGTACAACCGTTGACCTGCCGTCAGTTGTGAATTATTGGTACGCAGTTCGCGATCGGTCAGGCCACGGCAGAAACTTGCCGCCGTAGAACAAACGGTTGTTGGCGTTACCGGTTGGTTGAGTTGAAGCAAACGGCCAATTGCCGCACATAGCAGCCCTAAAGAAAAA‑AT‑GCTG‑CCTTTATGCGTGTTTACGCCCGCAGTGGCG‑CGGAACATATCACCTTCGCAAGCCATACCAATTGGGCGTAATCCGTGGAGTACCGCTTCTGGT‑GCCATTTCCGCACTACAGGCACCAAATTCAATGAAACGGGGTAGCCAGCCCTGAATCGCCAGCGCGCTGCGGTGGAAATCTTCCAGCGCCATATCTTTGTGCGCACCGCAGTTAATGCGATCCACGAGGCCTGGTTTCGGTGACAGATTGACTTCAGTCAGCATGGCGCGCCAGCCCAGCAGGG > NC_000913/646974‑647445
|
gcaccGGTAAGGCCAAGCGTGTGGTAAAACCGTTGCCCTGCCGGCAGTTGAGAATTATTGGTACGCAGTTCGCGATCGGTCAGGCCACGGCAGAAACTTGCCGCCGTAGAACAAACGGTTGTTGGCGTTACCGGTTGGTTGAGTTGAAGCAAACGGCCAATTGCCGCACATAGCAGCCCTAAAGAAAAA‑AT‑GCTG‑CCTTTATGCGTGTTTACGCCCGCAGTGGCG‑CGGAACATATCAc < 1:473790/235‑1 (MQ=255)
gCCAAGCTTTTGTAACAACGGTTGACCTGCCGGCAGTTGAGAATTATTGGTACGCAGTGCGCGATCGGTCAGGCCCCGGCAGAACCTTGCCGCCGTAGAACAAACGGTTGTTGGCGTTACCGGTTGGTTGAGTTGAAGCAAACGGCCAATTGCCGCACATAGCAGCCCTAAAGAAAAA‑AT‑GCTG‑CCTTTATGCGTGTTTACGCCCGCAGTGGCG‑CGGAACATATCACCTTCGCAAGc < 1:1044731/237‑1 (MQ=255)
aaGCTGTTGGTACAACCGTTGACCTGCCGTCAGTTGTGAATTATTGGTACGCAGTTCGCGATCGGTCAGGCCACGGCAGAAACTTGCCGCCGTAGAACAAACGGTTGTTGGCGTTACCGGTTGGTTGAGTTGAAGCAAACGGCCAATTGCCGCACATAGCAGCCCTAAAGAAAAA‑AT‑GCGG‑CCTTTATGCGTGTTTACGCCCGCAGGGGCC‑CGGAACATATCACCTAAGCAAGCCATAc > 1:355530/1‑239 (MQ=255)
tGGTACAACCGTTGACCTGCCGTCAGTTGTGAATTATTGGTACGCAGTTCGCGATCGGTCAGGCCACGGCAGAAACTTGCCGCCGTAGAACAAACGGTTGTTGGCGTTACCGGTTGGTTGAGTTGAAGCAAACGGCCAATTGCCGCACATAGCAGCCCTAAAGAAAAA‑AT‑GCTG‑CCTTTATGCGTGTTTACGCCCGCAGTGGCG‑CGGAACATATCACCTTCGCAAGCCATACCAATTgg > 1:981292/1‑239 (MQ=255)
cAACCGTTGACCGGCCGTCCGTTGTGAATTATGGGTACGCAGTGCGCGATCGGTCGGGCCACGGAAAAAATTTGCCGCCGTAGAACAAACGGTTGTTGGCGTTACCGGTTGGTTGAGTTGAAGCAAACGGCCAATTGCCGCACATAGCAGCCCTAAAGAAAAA‑AT‑GCTG‑CCTTTATGCGTGTTTACGCCCGCAGTGGCG‑CGGAACATATCACCTTCGCAAGCCATACCAATTGGGCGTa < 1:92266/239‑1 (MQ=255)
aCCGTTGACCTGCCGTCAGTTGTGAATTATTGGTACGCAGTTCGCGATCGGTCAGGCCACGGCAGAAACTTGCCGCCGTAGAACAAACGGTTGTTGGCGTTACCGGTTGGTTGAGTTGAAGCAAACGGCCAATTGCCGCACATAGCAGCCCTAAAGAAAAA‑AT‑GCTG‑CCTTTATGCGTGTTTACGCCCGCAGTGGCG‑CGGAACATATCACCTTCGCAAGCCATACCAATTGGGCGTaa > 1:254609/1‑238 (MQ=255)
aCCGTTGACCTGCCGTCAGTTGTGAATTATTGGTACGCAGTTCGCGATCGGTCAGGCCACGGCAGAAACTTGCCGCCGTAGAACAAACGGTTGTTGGCGTTACCGGTTGGTTGAGTTGAAGCAAACGGCCAATTGCCGCACATAGCAGCCCTAAAGAAAAA‑AT‑GCTG‑CCTTTATGCGGGTTTACGCCCGCAGGGGCG‑CGGAACAAATCACCTTAGCAAGCCATACCAATTggggggaa > 2:92266/1‑233 (MQ=255)
ttGACCTGCCGTCAGTTGTGAATTATTGGTACGCAGTTCGCGATCGGTCAGGCCACGGCAGAAACTTGCCGCCGTAGAACAAACGGTTGTTGGCGTTACCGGTTGGTTGAGTTGAAGCAAACGGCCAATTGCCGCACATAGCAGCCCTAAAGAAAAA‑AT‑GCTG‑CCTTTATGCGTGTTTACGCCCGCAGTGGCG‑CGGAACCTATCACCTTCGCAAGCCATACCAATTGAGCGTAATCCGt > 1:697287/1‑239 (MQ=255)
ttGACCTGCCGTCAGTTGTGAATTATTGGTACGCAGTTCGCGATCGGTCAGGCCACGGCAGAAACTTGCCGCCGTAGAACAAACGGTTGTTGGCGTTACCGGTTGGTTGAGTTGAAGCAAACGGCCAATTGCCGCACATAGCAGCCCTAAAGAAAAA‑AT‑GCTG‑CCTTTATGCGTGTTTACGCCCGCAGTGGCG‑CGGAACAGATCACCTTCGCAAGCCATACCAATTGGGCGTAATCCGt > 1:135384/1‑239 (MQ=255)
tGACCTGCCGTCAGTTGTGAATTATTGGTACGCAGTTCGCGATCGGTCAGGCCACGGCAGAAACTTGCCGCCGTAGAACAAACGGTTGTTGGCGTTACCGGTTGGTTGAGTTGAAGCAAACGGCCAATTGCCGCACATAGCAGCCCTAAAGAAAAA‑AT‑GCTG‑CCTTTATGCGTGTTTACGCCCGCAGTGGCG‑CGGAACATATCACCTTCGCAAGCCATACCAATTGGGCGTAATCCGTg > 1:510444/1‑239 (MQ=255)
gACCTGCCGTCAGTTGTGAATTATTGGTACGCAGTTCGCGATCGGTCAGGCCACGGCAGAAACTTGCCGCCGTAGAACAAACGGTTGTTGGCGTTACCGGTTGGTTGAGTTGAAGCAAACGGCCAATTGCCGCACATAGCAGCCCTAAAGCAAAA‑AT‑GCTG‑CCTTTATGCGTGTTTACGCCCGCAGTGGCG‑CGGAAAATATAACCTTCGCAAGCCATACCCATTGGGGGGAACCCgggg > 2:906368/1‑239 (MQ=255)
gACCTGCCGTCAGTTGTGAATTATTGGTACGCAGTTCGCGATCGGTCAGGCCACGGCAGAAACTTGCCGCCGTAGAACAAACGGTTGTTGGCGTTACCGGTTGGTTGAGTTGAAGCAAACGGCCAATTGCCGCACATAGCAGCCCTAAAGAAAAA‑AT‑GCTG‑CCTTTATGCGTGTTTACGCCCGCAGTGGCG‑CGGAACATATCACCTTCGCAAGCCCTAccctgtctctttttcacatc > 1:974463/1‑220 (MQ=255)
gACCTGCCGTCAGTTGTGAATTATTGGTACGCAGTTCGCGATCGGTCAGGCCACGGCAGAAACTTGCCGCCGTAGAACAAACGGTTGTTGGCGTTACCGGTTGGGTGAGTTGAAGCAAACGGCCAATTGCCGCACATAGCAGCCCTAAAGAAAAA‑AT‑ACTG‑CCTTTATGCGTGTTTACGCCCCCAGTGGCG‑CGGAACATAACACACTCGCAAGCAAAACCAATTAGGGGTAACCCGTgg > 2:652168/1‑239 (MQ=255)
gCCGTCAGTTGTGAATTATTGGTACGCAGTTCGCGATCGGTCAGGCCACGGCAGAAACTTGCCGCCGTAGAACAAACGGTTGTTGGCGTTACCGGTTGGTTGAGTTGAAGCAAACGGCCAATTGCCGCACATAGCAGCCCTAAAGAAAAA‑AT‑GCTG‑CCTTTATGCGTGTTTACGCCCGCAGTGGCG‑CGGAACATATCACCTTCGCAAGCCATCCCAATTGGGCGTAATCCGTGGAGTa > 1:763137/1‑238 (MQ=255)
gCCGTCAGTTGTGAATTATTGGTACGCAGTTCGCGATCGGTCAGGCCACGGCAGAAACTTGCCGCCGTAGAACAAACGGTTGTTGGCGTTACCGGTTGGTTGAGTTGAAGCAAACGGCCAATTGCCGCACATAGCAGCCCTAAAGAAAAA‑AT‑GCTG‑CCTTTATGCGGGTTTACGCCCGCAGTGGCG‑AGGAACATATCACCTTCGCAAGCCATCCCAATTGGGCGTAATCCGTGGAGTa > 1:1104119/1‑238 (MQ=255)
ccGTCAGTTGTGAATTATTGGTACGCAGTTCGCGATCGGTCAGGCCACGGCAGAAACTTGCCGCCGTAGAACAAACGGTTGTTGGCGTTACCGGTTGGTTGAGTTGAAGCAAACGGCCAATTGCCGCACATAGCAGCCCTAAAGAAAAA‑AT‑GCTG‑CCTTTATGCGTGTTTACGCCCGCAGTGGCG‑CGGAACATATCACCTTCGCAAGCCATCCCAATTGGGCGTAATCCTTGGGGTAc > 1:275755/1‑238 (MQ=255)
aGTTGTGAATTATTGGTACGCAGTTCGCGATCGGTCAGGCCACGGCAGAAACTTGCCGCCGTAGAACAAACGGTTGTTGGCGTTACCGGTTGGTTGAGTTGAAGCAAACGGCCAATTGCCGCACATAGCGGCCCTAAAGAAAAA‑AT‑GCTG‑CCTTTATGCGGGTTTACCCCCCCAGGGGCC‑GGGAACAAATACCCTTCCAAAACCATCCCCATTGGGGGCAATCCGGGGGGAACCCCttt > 2:653964/1‑238 (MQ=255)
aGTTGTGAATTATTGGTACGCAGTTCGCGATCGGTCAGGCCACGGCAGAAACTTGCCGCCGTAGAACAAACGGTTGTTGGCGTTACCGGTTGGTTGAGTTGAAGCAAACGGCCAATTGCCGCACATAGCAGCCCTAAAGAAAAA‑AT‑GCTG‑CCTTTATGCGGGTTTACGCCCGCAGGGGCG‑CGGAACATATCACCTTCGCCAGCCCAACCAATTGGGTGTAATCCGGGGGGTACCCCTTc > 2:822586/1‑239 (MQ=255)
ttGGTACGCAGTTCGCGATCGGTCAGGCCACGGCAGAAACTTGCCGCCGTAGAACAAACGGTTGTTGGCGTTACCGGTTGGTTGAGTTGAAGCAAACGGCCAATTGCCGCACATAGCAGCCCTAAAGAAAAA‑AT‑GCTG‑CCTTTATGCGTGTTTACGCCCGCAGTGGCG‑CGGAACATATCACCTTCGCAAGCCATACCAATTGGGCGTAATCAGTGGAGTACCGCTTCTGGG‑GCCAttt > 1:810520/1‑238 (MQ=255)
cAGTTCGCGATCGGTCAGGCCACGGCAGAAACTTGCCGCCGTAGAACAAACGGTTGTTGGCGTTACCGGTTGGTTGCGTTGACGCAAACGGCCAATTGCCGCACATAGCAGCCCTAAAGAAAAA‑AT‑GCTG‑CCTTTATCCTTGTTTACACCCGCAGCTGCG‑CGGAACCTATCCCCCTCGAACCCCCTACCAATTGGGCGGCAACCGCGCGGAACCCCTCCTTGT‑GCCCTTTccccccacc > 2:406910/1‑232 (MQ=255)
tttcggtcgtgttgcgccctcGGGAGAACTTTGGCGCCGGAGAACAACCTGTTGTTGGCTTTCCCGGTTGTTTGAGTTGAACCAAACGGCCAATTCCCGCAAATGGCAGCCCGAAACAAAAA‑AT‑GCTG‑CTTTTATCCGTGTTTCCGCCCGCAGTGGCG‑CGGAACATATCCCCTTCGCAAGCCATACCAATTGGGCGTAATCCGTGGAGTACCGCTTCTGGT‑GCCATTTCCGCACTACa < 2:1091176/218‑1 (MQ=255)
ttCGCGATCGGTCAGGCCACGGCAGAAACTTGCCGCCGTAGAACAAACGGTTGTTGGCGTTACCGGTTGGTTGAGTTGAAGCAAACGGCCAATTGCCGCACATAGCAGCCCTAAAGAAAAA‑AT‑GCTG‑CCTTTATGCGGGTTTACGCCCGCAGTGGCG‑CGGAACATATCACCTTCACAAGCCATACCAATTGGGCGCAATCCGGGGAGAACCGCTTCCGGG‑CCCATTTCCGCACCACAg > 2:471657/1‑238 (MQ=255)
cgcgATCGGTCAGGCCACGGCAGAAACTTGCCGCCGTAGAACAAACGGGTGTTGGCGTTACCGGTTGGTTGAGTTGAAGCAAACGGCCAATTGCCGAACATAGCAGCCCTAAAGAAAAA‑AT‑CCTG‑CCTTTATGCGTGTTTACGCCCGCAGTGGCG‑CGGAACATATCACCTTCGCAAGCCATACCAATTGGGCGTAATCCGTGGAGTACCGCTTCTGGG‑GCCATTTCCGCAACACAGGc > 1:780224/1‑238 (MQ=255)
gcgATCGGCCGGGCCACGGCAAAAACTGGCCGCCGTAGAACAAACGGTTGTTGGCGTTACCGGTTGGTTGAGTTGAAGCAACCGGCCAATTGCCGCACATAGCAGCCCTAAAGAAAAA‑AT‑GCTG‑CCTTTATGCGTGTTTACGCCCGCAGTGGCG‑CGGAACATATCACCTTCGCAAGCCATACCAATTGGGCGTAATCCGTGGAGTACCGCTTCTGGT‑GCCATTTCCGCACTACAGGCAc < 1:245528/239‑1 (MQ=255)
cGGTCAGGCCACGGCAGAAACTTGCCGCCGTAGAACAAACGGTTGTTGGCGTTACCGGTTGGTTGAGTTGAAGCAAACGGCCAATTGCCGCACATAGCAGCCCTAAAGAAAAA‑AT‑GCTG‑CCTTTATGCGTGTTTACGCCCGCAGTGGCG‑CGGAACATATCACCTTCGCAAGCCATACCAATTGGGCGTAATCCGTGGAGTACCGCTTCTGGT‑GCCATTTCCGCACTACAGGCACCAAAt > 1:913600/1‑239 (MQ=255)
gtaaggcatgggaaaaacgcggccggcGTAGAACAAACTGTTGTTGGCGTTACCGGTTGGTTGAGTTGAAGCAAACGGCAAATTGCCGCACATAGCAGCCCTAAAGAAAAA‑AT‑GCTG‑CCTTTATGCGTGTTTACGCCCGCAGTGGCG‑CGGAACATATCACCTGCGCAAGCCATACCAATTGGGCGTAATCCGTGGAGTACCGCTTCTGGT‑GCCATTTCCGCACTACAGGCACCAAAtt < 1:466054/217‑1 (MQ=255)
gTCAGGCCACGGCAGAAACTTGCCGCCGTAGAACAAACGGTTGTTGGCGTTACCGGTTGGTTGAGTTGCAGCAAACGGCCAATTGCCGCACATAGCAGCCCTAAAGAAAAA‑AT‑GCTG‑CCTTTATGCGTGGTTACGCCCGCAGTGGCG‑CGGACCAACTCACCTTCCCAAGCCATACCAATTGGCCGTAACCCGTGGAGAAACGCTT‑TGGTCGCCATTTCCCCACCCAAGCCACCaaaacc > 2:37140/1‑236 (MQ=255)
gTCAGGCCACGGCAGAAACTTGCCGCCGTAGAACAAACGGTTGTTGGCGTTACCGGTTGGTTGAGTTGAAGCAAACGGCCAATTGCCGCACATAGCAGCCCTAAAGAAAAA‑AT‑GCTG‑CCTTTATGCGTGTTTACGCCCGCAGTGGCC‑CGGAACATATCACCTTCGCAAGCCATACCACTTGGGCGTAATCCGTGGAGTACCGCTTCTGGT‑GCCATTTCCCCACTACAGGCACCAAAtta > 1:568574/1‑238 (MQ=255)
cgcggaaaacaCTGGCCGCCGAAAAAAAAACGGTTGTTGGCTTTACCGGTTGGTTGAGTTGAAGCAAACGGCCAATTGCCGCACATAGCGTCCCTAAAAAAAAA‑AT‑GCTG‑CCTTTAGGCGTGTTTACGCCCGAAGTGGCG‑CGGAAAATATCCCCTTCGCAAGCCATACCAATTGGGCGTAATCCGTGGAGTACCGCTTCTGGT‑GCCATTTCCGCACTACAGGCACCAAATTCAATGaa < 2:810520/228‑1 (MQ=255)
caggggaaaaaCTGGCCGCCGTAGAACAAACGGTTGTGGGCGTTACCGGTTGGTTGAGTTGAAGCAAACGGCCAATTGCCGCACATAGCAGCCCTAAAGAAAAA‑AT‑GCTG‑CCTTTATGCGTGTTTACGCCCGCAGTGGCG‑CGGAACATATCCCCTTCGCAAGCCATACCAATTGGGCGTAATCCGTGGAGTACCGCTTCTGGT‑GCCATTTCCGCACTACAGGCACCAAATTCAATGaa < 1:506450/230‑1 (MQ=255)
cGGCAGAAACTTGCCGCCGTAGAACAAACGGTTGTTGGCGTTACCGGTTGGTTGAGTTGAAGCAAACGGCCAATTGCCGCACATAGCAGCCCTAAAGAAAAA‑AT‑GCTG‑CCTTTATGCGTGTTTACGCCCGCAGTGGCG‑CGGAACATATCACCTTCGCAAGCCATACCAATTGGGCGTAATCCGTGGAGTACCGCTTCTGGT‑GCCATTTCCGCACTACAGGCACCAAATTCAATGAAACg > 1:1079719/1‑239 (MQ=255)
acttggccggtgTAGAACAAACGGTTTTTGGCGTTCCCGGTTGGTTGAGTTGAAGCAACCGGCCAATTGCCGCACATAGCAGCCCTAAAGAAAAA‑AT‑GCTG‑CCTTTATGCGTGTTTACGCCCGCAGTGGCG‑CGGAACATATCACCTTCGCAAGCCATACCAATTGGGCGTAATCCGTGGAGTACCGCTTCTGGT‑GCCATTTCCGCACTACAGGCACCAAATTCAATGAAACGGGGTagc < 1:342545/228‑1 (MQ=255)
aCGGTTGTTGGCGTTACCGGTTGGTTGAGTTGAAGCAAACGGCCAATTGCCGCACATAGCAGCCCTAAAGAAAAA‑AT‑GCTG‑CCTTTATGCGTGTTTACGCCCGCAGTGGCG‑CGGAACATATCACCTTCGCAAGCCATACCAATTGGGCGTAATCCGTGGAGTACCGCTTCTGGT‑GCCATTTCCGCACTACAGGCACCAACTTCAATGAAACGGGGTAGCCAGCCCTGAATCGCCAacg > 1:1016465/1‑238 (MQ=255)
tgttgGCGTTACCGGTTGGTTGAGTTGAAGCAAACGGCCAATTGCCGCACATAGCAGCCCTAAAGAAAAA‑AT‑GCTG‑CCTTTATGCGTGTTTACGCCCGCAGTGGCG‑CGGAACATATCACCTTCGCAAGCCATACCAATTGGGCGTAATCCGTGGAGTACCGCTTCTGGT‑GCCATTTCCGCACTACAGGCCCCAAATTCACGGAAACGGGCTAGCCAGCCCTGAATCGCCAGCGCGCTGc > 1:776949/1‑239 (MQ=255)
tACCGGTTGGTTGAGTTGAAGCAAACGGCCAATTGCCGCACATAGCAGCCCTAAAGAAAAA‑AT‑GCTG‑CCTTTATGCGTGTTTACGCCCGCAGTGGCG‑CGGAACATATCACCTTCGCAAGCCATACCAATTGGGCGTAATCCGTGGAGTACCGCTTCTGGT‑GCCATTTCCGCACTACAGGCa > 1:610458/1‑181 (MQ=255)
ttggtggAGTTGAAGCAAACGGCCAATTGCCCAACATAGCAGCCTTAAAGAAAAA‑AT‑GCTG‑CCTTTATGCGTGTTTACGCCCGCAGTGGCG‑CGGAACATATCACCTTCGCAAGCCATACCAATTGGGCGTAAGCCGTGGAGTACCGCTTCTGGT‑GCCATTTCCGCACTACAGGCACCAAATTCAATGAAACGGGGTAGCCAGCCCTGAATCGCCAGCGCGCTGCGGTGGAAATCTTcc < 1:850596/238‑1 (MQ=255)
ttggtggAGTGGAAGCAAGCGGCAAGTTGCCGCCGATAGC‑GCCCCAAAAAAAAA‑AA‑GGTGCCCTTAATCGGTGTTTCCCCTCGC‑GTGGGGCCGGACCATACCCCCTTCGAAAGCCATACCAATTGGGCGTAATCCGTGGAGTACCGCTTCTGGT‑GCCATTTCCGCACTACAGGCACCAAATTCAATGAAACGGGGTAGCCAGCCCTGAATCGCCAGCGCGCTGCGGTGGAAATCTTcc < 2:296131/238‑1 (MQ=255)
tttgttggttaagacaacgggCAAATTGCCCTACATAG‑AGCCCAAAAAAAAAAGAT‑GCGG‑TCGTTAGGTGTGTGTACGCCCGCAGTGCCG‑CGGATCATACCCCCTTCGCAAGCCATACCAATTGGGCGTAATCCGTGGAGTACCGCTTCTGGT‑GCCATTTCCGCACTACAGGCACCAAATTCAATGAAACGGGGTAGCCAGCCCTGAATCGCCAGCGCGCTGCGGTGGAAATCTTCCAg < 2:275755/220‑1 (MQ=255)
gagttgaAGAAAGCGGCCAATTGCCGCACAGAGCAGCCCTAAAGAAAAA‑AT‑GCTG‑CCTTTATGCGTGTTTACGCCCGCGGTGGCG‑CGGAACATATCCCCTTCGCAAGCCATACCAATTGGGCGTAATCCGTGGAGTACCGCTTCTGGT‑GCCATTTCCGCACTACAGGCACCAAATTCAATGAAACGGGGTAGCCAGCCCTGAATCGCCAGCGCGCTGCGGTGGAAATCTTCCAGCGCCa < 1:822586/239‑1 (MQ=255)
aaCGGCCAATTGCCGCACATAGCAGCCCTAAAGAAAAA‑AT‑GCTG‑CCTTTATGCGTGTTTCCGCCCGCAGTGGCG‑CGGAACATATCCCCTTCGCAAGCCATACCAATTGGGCGTAATCCGTGGAGTACCGCTTCTGGT‑GCCATTTCCGCACTACAGGCACCAAATTCAATGAAACGGGGTAGCCAGCCCTGAATCGCCAGCGCGCTGCGGTGGAAATCTTCCAGCGCCATATCTTTGTgc < 1:1092612/239‑1 (MQ=255)
ccGGCCATTTTCCCAACATACCCGCCCTAAAAAAAAA‑AG‑TCTG‑CCTTTAGGCGTGTTTCCGCCGTGGGTGGCG‑CGGAACATATCGCCCTCGCAAGCCATACCAATTGGGCGTAATCCGTGGAGTACCGCTTCTGGT‑GCCATTTCCGCACTACAGGCCCCAAATTCAATGAAACGGGGTAGCCAGCCCTGAATCGCCAGCGCGCTGCGGTGGAAATCTTCCAGCGCCATATCTTTGTgcg < 2:1094671/238‑1 (MQ=255)
aCGGCCAATTGCCGCACATAGCAGCCCTAAAGAAAAA‑AT‑GCTG‑CCTTTATGCGTGTTTACGCCCGCAGTGGCG‑CGGAACATATCACCTTCGCAAGCCATACCAATTGGGCGTAATCCGTGGAGTACCGCTTCTGGT‑GCCATTTCCGCACTACAGGCACCAAATTCAATGAACCGGGGTAGCCAGCCCTGACTCGCCACCCCGCTCCGGGGGAAATCTTCCAGCCCCCTATCTTTGTgc > 2:779877/1‑238 (MQ=255)
cGGCCAATTGCCGCACATAGCAGCCCTAAAGAAAAA‑AT‑GCTG‑CCTTTATGCGTGTTTACGCCCGCAGTGGCG‑CGGAACATATCACCTTCGCAAGCCATACCAATTGGGCGTAATCCGTGGAGGACCGCTTCTGGG‑GCCATTTCCGCACTACAGGCACCAAATTCAATGAAACGGGGTAGCCAGCCCTGAATCGCCAGCGCGCGGCGGGGGAAATATTCCAGCGCCATACCTTTGGgcgc > 2:720304/1‑239 (MQ=255)
ccaattgcccccagaagccgcCCTAAAGAAAAA‑AT‑GCGT‑CCTTTAGGCGTGTTTACGCCCGCAGTGGCG‑CGAACCAATTCCCCTTCGCAAGCCATACCAATTGGGCGTAATCCGTGGAGTACCGCTTCTGGT‑GCCATTTCCGCACTACAGGCACCAAATTCAATGAAACGGGGTAGCCAGCCCTGAATCGCCAGCGCGCTGCGGTGGAAATCTTCCAGCGCCATATCTTTGTGCGCAc < 1:811719/223‑1 (MQ=255)
ttGCCCCACATAGCAACCCAAAAGAAAAA‑AT‑GCTG‑CCTTTAGGCGTGTTTACGCCCGCAGGGGCG‑CGGAACATATCACCTGCGCAAGCCATACCAATTGGGCGTAATCCGTGGAGTACCGCTTCTGGT‑GCCATTTCCGCACTACAGGCACCAAATTCAATGAAACGGGGTAGCCAGCCCTGAATCGCCAGCGCGCTGCGGTGGAAATCTTCCAGCGCCATATCTTTGTGCGCACCGCAg < 1:195725/239‑1 (MQ=255)
tccaTAGCCACCCTAAAAAAAAA‑AT‑GCTG‑CCTTTATGCGTGTTTACGCCCGTAGTGGCG‑CGGAACATATCCCCTTCGCAAGCCATACCAATTGGGCGTAATCCGTGGAGTACCGCTTCTGGT‑GCCATTTCCGCACTACAGGCACCAAATTCAATGAAACGGGGTAGCCAGCCCTGAATCGCCAGCGCGCTGCGGTGGAAATCTTCCAGCGCCATATCTTTGTGCGCACCGCAGTTAATg < 1:264601/237‑1 (MQ=255)
tccttcgcgcCCCAAAAAAAAA‑ATGGCTT‑CTTTTAGGGGGTTTTCCGCCCGGAGGGGCG‑CGGAATATCCCCCCTTCTAAAGCCATACCAATTGGGCGTAATCCGTGGAGTACCGCTTCTGGT‑GCCATTTCCGCACTACAGGCACCAAATTCAATGAAACGGGGTAGCCAGCCCTGAATCGCCAGCGCGCTGCGGTGGAAATCTTCCAGCGCCATATCTTTGTGCGCACCGCAGTTAATg < 2:254609/231‑1 (MQ=255)
agcagcCCTAAAGAAAAA‑AT‑GCTG‑CCTTTATGCGTGTTTACGCCCGCAGTGGCG‑CGGAACATATCACCTTCGCAAGCCATACCAATTGGGCGTAATCCGTGGAGTACCGCTTCTGGT‑GCCATTTCCGCACTACAGGCACCAAATTCAATGAAACGGGGTAGCCAGCCCTGAATCGCCAGCGCGCTGCGGTGGAAATCTTCCAGCGCCATATCTTTGTGCGCACCGCCGTTAATGCgtc > 1:405598/1‑236 (MQ=255)
cagcCCTAAAGAAAAA‑AT‑GCTG‑CCTTTATGCGTGTTTACGCCCGCAGTGGCG‑CGGAACATATCACCTTCGCAAGCCATACCAATTGGGCGTAATCCGTGGAGTACCGCTTCTGGT‑GCCATTTCCGCACTACAGGCACCAAATTCAATGAAACGGGGTAGCCAGCCCTGAACCGCCAGCCCGCGCCGGTGGGAATCTTCCAGCGCCAAACCTTTTTGCCAACCCAAGTTAAtcgaaacc > 2:894587/1‑231 (MQ=255)
tAAAGAAAAA‑AT‑GCTG‑CCTTTATGCGTGTTTACGCCCGCAGTGGCG‑CGGAACATATCACCTTCGCAAGCCATACCAATTGGGCGTAATCCGTGGAGTACCGCTTCTGGT‑GCCATTTCCGCACTACAGGCACCAAATTCAATGAAACGGGGTAGCCAGCCCTGAATCGCCAGCGCGCTGCGGGGGAAATCTTCCAGCGCCCTATCTTTTGGCCAACCCCAGTTAATGCGATCCCCGCgg > 1:427664/1‑238 (MQ=255)
aaGAAAAA‑AT‑GCTG‑CCTTTATGCGTGTTTACGCCCGCAGTGGCG‑CGGAACATATCACCTTCGCAAGCCATACCAATTGGGCGTAATCCGTGGAGTACCGCTTCTGGT‑GCCATTTCCGCACTACAGGCACCAAATTCAATGAAACGGGGTAGCCAGCCCTGAATCGCCAGCGCGCTGCGGTGGAAATCTTCCAGCGCCatat > 1:998304/1‑201 (MQ=255)
aaa‑aT‑GCTG‑CCTTTATGCGTTTTTACGCCCGCAGTGGCG‑CGGAACATATCCCCTTCGCAAGCCATACCAATTGGGCGTAATCCGTGGAGTACCGCTTCTGGT‑GCCATTTCCGCACTACAGGCACCAAATTCAATGAAACGGGGTAGCCAGCCCTGAATCGCCAGCGCGCTGCGGTGGAAATCTTCCAGCGCCATATCTTTGTGCGCACCGCAGTTAATGCGATCCACGAGGCCTGGttt < 1:471657/239‑1 (MQ=255)
tttATGCGGGTTTCCGCCCGAGGGGGCG‑CGGAACACTGCCCCCTGCCAAGCCCTACCAATTGGGCGTAACCCGTGGAGTACCGCTTCTGGT‑GCCATTTCCGCACTACAGGCACCAAATTCAATGAAACGGGGTAGCCAGCCCTGAATCGCCAGCGCGCTGCGGTGGAAATCTTCCAGCGCCATATCTTTGTGCGCACCGCAGTTAATGCGATCCACGAGGCCTGGTTTCGGTGACAGAt < 1:652168/239‑1 (MQ=255)
aTGCGTGTTTACGCCCGCAGTGGCG‑CGGAACATATCACCTTCGCAAGCCATACCAATTGGGCGTAATCCGTGGAGTACCGCTTCTGGT‑GCCATTTCCGCACTACAGGCACCAAATTCAATGAAACGGGGTAGCCAGCCCTGAATCGCCAGCGCGCTGCGGTGGAAATCTTCCAGCGCCATATCTTTGTGCGCACCGCAGTTAATGCGATCCACGAGGCCTGGTTTCGGTGACAGATTg > 1:892991/1‑238 (MQ=255)
tttACGCCCGCAGTGGCG‑CGGAACATATCACCTTCGCAAGCCATACCAATTGGGCGTAATCCGTGGAGTACCGCTTCTGGT‑GCCATTTCCGCACTACAGGCACCAAATTCAATGAAACGGGGTAGCCAGCCCTGAATCGCCAGCGCGCTGCGGTGGAAATCTTCCAGCGCCATATCTTTGTGCGCACCGCAGTTAATGCGATCCACGAGGCCTGGTTTCGGTGACCGATTGACTtcag > 1:1028870/1‑238 (MQ=255)
tttACGCCCGCAGTGGCG‑CGGAACATATCACCTTCGCAAGCCATACCAATTGGGCGTAATCCGTGGAGTACCGCTTCTGGT‑GCCATTTCCGCACTACAGGCACCAAATTCAATGAAACGGGGTAGCCAGCCCTGAATCGCCAGCGCGCTGCGGTGGAAATCTTCCAGCGCCATATCTTTGTGCGCACCGCAGTTAATGCGATCCACGAGGCCTGGTTTCGGTGACAGCTTGACTtcag > 1:174697/1‑238 (MQ=255)
cggaGTGGCA‑CGGCACATCCCCCCGTCGCAAGCCATACCAATTGGGCGTAATCCGTTGAGTACCGCTTCTGGT‑GCCATTTCCGCACTACAGGCACCAAATTCAATGAAACGGGGTAGCCAGCCCTGAATCGCCAGCGCGCTGCGGTGGAAATCTTCCAGCGCCATATCTTTGTGCGCACCGCAGTTAATGCGATCCACGAGGCCTGGTTTCGGTGACAGATTGACTTCAGTCAGCATgg < 1:37140/236‑1 (MQ=255)
tatCCCCTCCGCAAGCCATACCAATTGGGCGTAATCCGTGGAGTACCGCTTCGGGT‑GCCATTTCCGCACTACAGGCACCAAATTCAATGAAACGGGGTAGCCAGCCCTGAATCGCCAGCGCGCTGCGGTGGAAATCTTCCAGCGCCATATCTTTGTGCGCACCGCAGTTAATGCGATCCACGAGGCCTGGTTTCGGTGACAGATTGACTTCAGTCAGCATGGCGCGCCAGCCCAGCAgg < 1:433181/239‑1 (MQ=255)
atCACCTTCGCAAGCCATACCAATTGGGCGTAATCCGTGGAGTACCGCTTCTGGT‑GCCATTTCCGCACTACAGGCACCAAATTCAATGAAACGGGGTAGCCAGCCCTGAATCGCCAGCGCGCTGCGGTGGGAATCTTCCAGCGCCATATCTTTGTGCGCACCGCAGTTAATGCGATCCACGAGGCCTGGTTTCGGTGACAGATTGACTTCAGTCAGCATGGCGGGCCAGCCCCGCAggg > 2:804551/1‑239 (MQ=255)
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GCGCCGGTAAGGCCAAGCTGTTGGTACAACCGTTGACCTGCCGTCAGTTGTGAATTATTGGTACGCAGTTCGCGATCGGTCAGGCCACGGCAGAAACTTGCCGCCGTAGAACAAACGGTTGTTGGCGTTACCGGTTGGTTGAGTTGAAGCAAACGGCCAATTGCCGCACATAGCAGCCCTAAAGAAAAA‑AT‑GCTG‑CCTTTATGCGTGTTTACGCCCGCAGTGGCG‑CGGAACATATCACCTTCGCAAGCCATACCAATTGGGCGTAATCCGTGGAGTACCGCTTCTGGT‑GCCATTTCCGCACTACAGGCACCAAATTCAATGAAACGGGGTAGCCAGCCCTGAATCGCCAGCGCGCTGCGGTGGAAATCTTCCAGCGCCATATCTTTGTGCGCACCGCAGTTAATGCGATCCACGAGGCCTGGTTTCGGTGACAGATTGACTTCAGTCAGCATGGCGCGCCAGCCCAGCAGGG > NC_000913/646974‑647445
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
