Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A3 F17 I0 R1	155	84.1	1797446	90.9%	1633878	230.3

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
RA	NC_000913	647,210	A→C	22.2%	G100G (GGT→GGG)	citG ←	2‑(5''‑triphosphoribosyl)‑3'‑dephosphocoenzyme‑A synthase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	647,210	0	A	C	22.2%	136.5 / 7.2	75	G100G (GGT→GGG)	citG	2‑(5''‑triphosphoribosyl)‑3'‑dephosphocoenzyme‑A synthase
Reads supporting (aligned to +/- strand): ref base A (42/12); new base C (2/18); total (44/31)
Fisher's exact test for biased strand distribution p-value = 1.43e-07
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

TGCGCCGGTAAGGCCAAGCTGTTGGTACAACCGTTGACCTGCCGTCAGTTGTGAATTATTGGTACGCAGTTCGCGATCGGTCAGGCCACGGCAGAAACTTGCCGCCGTAGAACAAACGGTTGTT‑GGC‑GTTACCGGTTGGTTGAGTTGAAGCAAACGGCCAATTG‑CCGCACATAGCAGCCCT‑AAAGAAAAAATG‑CTGCCTTTATG‑CGTGTTTACGCCCGCAGTGGCGCGGAACA‑TATCA‑CCTTCGCAAGCCATACCAATTGGGCGTAATCCGTGGAGTACCGCTTCTGGTGCCATTTCCGCACTACAGGCACCAAATTCAATGAAACGGGGTAGCCAGCCCTGAATCGCCAGCGCGCTGCGGTGGAAATCTTCCAGCGCCATATCTTTGTGCGCACCGCAGTTAATGCGATCCACGAGGCCTGGTTTCGGTGACAGATTGACTTCAGTCAGCATGGCGCGCCAGCCCAGCAGGG  >  NC_000913/646973‑647445

tGCGCCGGTAAGGCCAAGCTGTTGGTACAACCGTTGACCTGCCGTCAGTTGTGAATTATTGGTACGCAGTTCGCGATCGGTCAGGCCACGGCAGAAACTTGCCGCCGTAGAACAAACGGTTGTT‑GGC‑GTTACCGGTTGGTTGAGTTGAAGCAAACGGCCAATTG‑CCGCACATAGCAGCCCT‑AAAGAAAAAATG‑CTGCCTTTATG‑CGTGTTTACGCCCGCAGTGGCGCGGAACA‑TATCa                                                                                                                                                                                                                                              >  2:842482/1‑238 (MQ=255)

tGCGCCGGTAAGGCCAAGCTGTTGGTACAACCGTTGACCTGCCGTCAGTTGTGAATTATTGGTACGCAGTTCGCGATCGGTCAGGCCACGGCAGAAACTTGCCGCCGTAGAACAAACGGTTGTT‑GGC‑GTTACCGGTTGGTTGAGTTGAAGCAAACGGCAAATTG‑CACCCCATAGCAGCTCC‑AAAGAAAAAATG‑CTGCCCTTATA‑CGGTTTTACCCCCCCAGGGGGCAGGAACA‑AATCa                                                                                                                                                                                                                                              >  1:497746/1‑238 (MQ=255)

                               cGTTGACCTGCCGTCAGTTGTGAATTATTGGTACGCAGTTCGCGATCGGTCAGGCCACGGCAGAAACTTGCCGCCGTAGAACAAACGGTTGTT‑GGC‑GTTACCGGTTGGTTGAGTTGAAGCAAACGGCCAATTG‑CCGCACATAGCAGCCCT‑AAAGAAAAAATG‑CTGCCTTTATG‑CGTGTTTACGCCCGCAGTGGCGCGGAACA‑TATCA‑CCTTCGCAAGCCATACCAATTGGGCGTAATcc                                                                                                                                                                                                             >  2:716680/1‑239 (MQ=255)

                               cGTTGACCTGCCGTCAGTTGTGAATTATTGGTACGCAGTTCGCGATCGGTCAGGCCACGGCAGAAACTTGCCGCCGTAGAACAAACGGTTGTT‑GGC‑GTTACCGGTTGGTTGAGTTGAAGCAAACGGCCAATTG‑CCGCACATAGCAGCCCT‑AAAGAAAAAATG‑CTGCCTTTATG‑CGGGTTTACGCCCGCAGTGCGGCGGAAAA‑AATCA‑ACTTCCCAAACCATACAAAATgggggaaaacg                                                                                                                                                                                                             >  1:340413/1‑231 (MQ=255)

                                 ttGACCTGCCGTCAGTTGTGAATTATTGGTACGCAGTTCGCGATCGGTCAGGCCACGGCAGAAACTTGCCGCCGTAGCACGAACGGTTGTT‑GGC‑GTTACCGGTTGGTTGAGTTGAAGCAAACGGCCAATTG‑CCGCACATAGCAGCCCT‑AAAGAAAAAATG‑CTGCCTTTATG‑CGTGTTTACGCCCGCAGTGGCGCGGAGCA‑TATCA‑CCTTCGAATGCCCTACCAATTGGGCGTAATCCgg                                                                                                                                                                                                           >  2:511785/1‑238 (MQ=255)

                                 ttGACCTGCCGTCAGTTGTGAATTATTGGTACGCAGTTCGCGATCGGTCAGGCCACGGCAGAAACTTGCCGCCGTAGAACAAACGGTTGTT‑GGC‑GTTACCGGTTGGTTGAGTTGAAGCAAACGGCCAATTG‑CCGCACATAGCAGCCCT‑AAAGAAAAAATG‑CTGCCTTTATG‑CGTGTTTACGCCCGCAGTGGCGCGGAACA‑TATCA‑CCTTCGCAAGCCATACCAATTGGGCGTAATCCGt                                                                                                                                                                                                           >  2:762749/1‑239 (MQ=255)

                                 ttGACCTGCCGTCAGTTGTGAATTATTGGTACGCAGTTCGCGATCGGTCAGGCCACGGCAGAAACTTGCCGCCGTAGAACAAACGGTTGTT‑GGC‑GTTACCGGTTGGTTGAGTTGAAGCAAACGGCCAATTG‑CCGCACATAGCAGCCCT‑AAAGAAAAAATG‑CTGCCTTTATG‑CGGGTTTACACCCGCAGTGGCGCGGAACA‑TATCA‑CCTTCGCAAGCCATACCACTTGGGCGTAATCCGt                                                                                                                                                                                                           >  2:441269/1‑239 (MQ=255)

                                   gACCTGCCGTCAGTTGTGAATTATTGGTACGCAGTTCGCGATCGGTCAGGCCACGGCAGAAACTTGCCGCCGTAGAACAAACGGTTGTT‑GGC‑GTTACCGGTTGGTTGAGTTGAACCAAACGGCCAATTG‑CCGCACATAGCAGCCCT‑AAAGAAAAAATG‑CTGCCATTCTC‑CGGGTTTACGCCCGCATAGGCGCGGAACA‑TATCA‑CCTTCGCAAACCCTACCAATTGGGGGGAAACCgggg                                                                                                                                                                                                         >  1:663062/1‑239 (MQ=255)

                                        gCCGTCAGTTGTGAATTATTGGTACGCAGTTCGCGATCGGTCAGGCCACGGCAGAAACTTGCCGCCGTAGAACAAACGGTTGTT‑GGC‑GTTACCGGTTGGTTGAGTTGAAGCAAACGGCCAATTG‑CCGCCCATAGCAGCCCT‑AAAGAAAAAATG‑CTGCCTTTATG‑CGTGTTTACGCCCGAAGGGGCGCGGAACA‑TATAC‑CCTTCGCAAGCCCAACCAATGTGGCGGAACCCGTggggac                                                                                                                                                                                                     >  1:425561/1‑234 (MQ=255)

                                        gCCGTCAGTTGTGAATTATTGGTACGCAGTTCGCGATCGGTCAGGCCACGGCAGAAACTTGCCGCCGTAGAACAAACGGTTGTT‑GGC‑GTTACCGGTTGGTTGAGTTGAAGCAAACGGCCAATTG‑CCGCACATAGCAGCCCT‑AAAGAAAAAATG‑CTGCCTTTATG‑CGTGTTTACGCCCGCAGTGGCGCGGACCA‑TATCA‑CCTTCGCAAGCCGTACCAATTGGGGGGAATCCGGGGGGTa                                                                                                                                                                                                     >  2:760836/1‑238 (MQ=255)

                                        gCCGTCAGTTGTGAATTATTGGTACGCAGTTCGCGATCGGTCAGGCCACGGCAGAAACTTGCCGCCGTAGAACAAACGGTTGTT‑GGC‑GTTACCGGTTGGTTGAGTTGAAGCAAACGGCCAATTG‑CCGCACATAGCAGCCCT‑AAAGAAAAAATG‑CTGCCTTTATG‑CGTGTTTACGCCCGCAGTGGCGCGGAAAA‑TATCA‑CCTTCGCAACCCATCCCAATTTGGCGTAATCCGTGGAGTa                                                                                                                                                                                                     >  2:385248/1‑238 (MQ=255)

                                        gCCGTCAGTTGTGAATTATTGGTACGCAGTTCGCGATCGGTCAGGCCACGGCAGAAACTTGCCGCCGTAGAACAAACGGTTGTT‑GGC‑GTTACCGGTTGGTTGAGTTGAAGCAAACGGCCAATTG‑CCGCACATAGCAGCCCT‑AAAGAAAAAATG‑CAGCCTTTATG‑CGTGTTTACGCCCGCCGTGGCGCGGAACA‑TATCA‑CCTTCGCAAGCCATACCAATTGGGCGTAATCCGTGGAGTa                                                                                                                                                                                                     >  2:439761/1‑238 (MQ=255)

                                        gCCGTCAGTTGTGAATTATTGGTACGCAGTTCGCGATCGGTCAGGCCACGGCAGAAACTTGCCGCCGTAGAACAAACGGGTGTT‑GGC‑GTTACCGGTTGGCTGAGTTGAAGCAAACGGCCACTTG‑CCGCACATAGCAGCCCT‑AAAGCAAAAATG‑CTGCCTGTTTG‑CGTGTTTACGCCCCACGTGCCCCGAAACA‑TACCA‑CCTTGCCAAGcca‑accaaaattggcgaaaaacaggggagac                                                                                                                                                                                                   >  1:71211/1‑216 (MQ=255)

                                         ccGTCAGTTGTGAATTATTGGTACGCAGTTCGCGATCGGTCAGGCCACGGCAGAAACTTGCCGCCGTAGAACAAACGGTTGTT‑GGC‑GTTACCGGTTGGTTGAGTTGAAGCAAACGGCCAATTG‑CCGCACATAGCAGCCCT‑AAAGAAAAAATG‑CTGCCTTTATG‑CGTTGTTACGCCCGCAGTGGCCCGGAACA‑TATCA‑CCTTCGCAAGCCATACCCATTGGGCTGAATCCGTGGCGTAc                                                                                                                                                                                                    >  2:732197/1‑238 (MQ=255)

                                         ccGTCAGTTGTGAATTATTGGTACGCAGTTCGCGATCGGTCAGGCCACGGCAGAAACTTGCCGCCGTAGAACAAACGGTTGTT‑GGC‑GTTACCGGTTGGTTGAGTTGAAGCAAACGGCCAATTG‑CCGCACATAGCAGCCCT‑AAAGAAAAAATG‑CTGCCTTTATG‑CGTGTTTACGCCCGCAGTGCCGCGGAACA‑TATCA‑CCTTCGCAAGCCATACCAATTGGGCGTAATCCGTGGAGTAc                                                                                                                                                                                                    >  2:661796/1‑238 (MQ=255)

                                                ttGTGAATTATTGGTACGCAGTTCGCGATCGGTCAGGCCACGGCAGAAACTTGCCGCCGTAGAACAAACGGTTGTT‑GGC‑GTTACCGGTTGGTTGAGTTGAAGCAAACGGCCAATTC‑CCGCACATAGCAGCCCT‑AAAGAAAAAATG‑CTGCCTTTATG‑CGTGTTTCGGCCCGCCGTGGCCCGGCACA‑ATTAA‑CCTTCCCAACCCATACAAATTGGGCGAAACCCGTGGacaacccgtc                                                                                                                                                                                               >  1:169446/1‑227 (MQ=255)

                                                ttGTAAATTAGTGGTCCGCGTTTCGGGATGGGCCGGGCCCCGGCAGAACCTGGCCGCCGTAGAACAAACGGTTGTG‑GGC‑GTTACCGGTTGGTTGAGTTGAAGCAAACGGCCAATTG‑CCGCACATAGCAGCCCT‑AAAGAAAAAATG‑CTGCCTTTATG‑CGTGTTTACGCCCGCAGTGGCGCGGAACA‑TATCA‑CCTTCGCAAGCCATACCAATTGGGCGTAATCCGTGGAGTACCGCTTCt                                                                                                                                                                                             <  2:477573/238‑1 (MQ=255)

                                                   tgAATTATTGGTACGCAGTTCGCGATCGGTCAGGCCACGGCAGAAACTTGCCGCCGTAGAACAAACGGTTGTT‑GGC‑GTTACCGGTTGGTTGAGTTGAAGCAAACGGCCAATTG‑CCGCACATAGCAGCCCT‑AAAGAAAAAATG‑CTGCCTTTATG‑CGGGTTTACGCCCGCAGTGGCGCGGAACA‑TATCA‑CCTTCGCAAGCCATACCAATTGGGCGTAATCCGTGGAGTACCGCTTCTggg                                                                                                                                                                                          >  2:228082/1‑237 (MQ=255)

                                                            ggTACGCAGTTCGCGATCGGTCAGGCCACGGCAGAAACTTGCCGCCGTAGAACAAACGGTTGTT‑GGC‑GTTACCGGTTGGTTGAGTTGAAGCAAACGGCCAATTG‑CCGCACATAGCAGCCCT‑AAAGAAAAAATG‑CTGCCTTTATG‑CGTGTTTACGCCCGCAGTGGCGCGGAACA‑TATCA‑CCTTCGCAAGCCATACCAATTGGGCGTAATCCGTGGAGTACCGCTTCTGGTGCCATTTcc                                                                                                                                                                                 >  2:692515/1‑238 (MQ=255)

                                                             gtccgattttcactgtgtggcgcgCCGCGGCAAAAGTTTGCCCCCGTAAAAAAAACGGTTTGG‑GGG‑GTGTCCGGTTGGTTGTATTGAAGGAACCGGCCAATTC‑CCGACCATACCACCCCT‑AAAGAAAAAAGG‑CTGCCTTTATG‑CGTGTTTACGCCCGCAGTGGCGCGGAACA‑TATCC‑CCTCCGCAAGCCATACCAATTGGGCGTAATCCGTGGAGTACCGCTTCTGGTGCCATTTCCGc                                                                                                                                                                               <  1:434700/216‑1 (MQ=255)

                                                               aCGCAGTTCGCGATCGGTCAGGCCACGGCAGAAACTTGCCGCCGTAGAACAAACGGTTGTT‑GGC‑GTTACCGGTTGGTTGAGTTGAAGCAAACGGCCAATTG‑CCGCACATAGCAGCCCT‑AAAGAAAAAATG‑CTGCCTTTATG‑CGTGTTTACGCCCGCAGTGGCGCGGAACA‑TATCA‑CCTTCGCAACCCATCCAAATTGGGCGGAATCCGTGGAGTACGGCtcccggagcacttgcagcat                                                                                                                                                                             >  2:665021/1‑220 (MQ=255)

                                                               aCGCAGTTCGCGATCGGTCAGGCCACGGCAGAAACTTGCCGCCGTAGAACAAACGGTTGTT‑GGC‑GTTACCAGTTGGTTGAGTTGAAGCAAACGGCCAATTG‑CCGCACATAGCAGCCCT‑AAAGAAAAAATG‑CTGCCTTTATG‑CGTGTTTACGCCCCCAGTGGCGCGGAACA‑TATCC‑CCTTATCAATCCAACCCAATTGGGGGAAATCCGGGGAGTACCGCTTCAGGGGCCCttcacccc                                                                                                                                                                              >  1:331033/1‑232 (MQ=255)

                                                                    ggtcgagtggggTCAGGCCCGGGCAGAAACTTGCCGCCGTAGAACAACCGGTTGTT‑GGC‑GTTACCGGTTGGTTGAGTTGAAGCAAACGGCCAATTG‑CCGCACAAAGCAGCCCT‑AAAGAAAAAAGG‑CTGCCTTTATG‑CGTGTTTACGCCCGCAGTGGCGCGGAACA‑TATCA‑CCTTCGCAAGCCATACCAATTGGGCGTAATCCGTGGAGTACCGCTTCTGGTGCCATTTCCGCACTACa                                                                                                                                                                         <  2:321176/228‑1 (MQ=255)

                                                                             gggccagcccccggaaaaattctGCCGCC‑TAAAACAAAAGGTGTTT‑GGCGGTTCCCGGTGGTGTGATGTGAACCAACGGGCAAATTC‑CCGCACAACCCACCCCA‑AAAAAAAAAATG‑CGCCTTTTTTG‑CGTGTTTCCGCCCGCAGTGGCGCGGAACA‑TACCC‑CCTTCGCAAGCCATACCAATTGGGCGTAATCCGTGGAGTACCGCTTCTGGTGCCATTTCCGCACTACAGGCACCaaa                                                                                                                                                                <  1:572743/216‑1 (MQ=255)

                                                                               gTCAGGCCACGGCAGAAACTTGCCGCCGTAGAACAAACGGTTGTT‑GGC‑GTTACCGGTTGGTTGAGTTGAAGCAAACGGCCAATTG‑CCGCACATAGCAGCCCT‑AAAGAAAAAATG‑CTGCCTTTATG‑CGTGTTTCCGCCCGCAGTGGCGCGGAACA‑TATCA‑CCTTCGCAAGCCCTACCAATTGGGCGTAATCCGTGGAGTACCGCTTCTGGGGCCATTTCCCCCCTACAGGCACCAAAtca                                                                                                                                                             >  1:226881/1‑237 (MQ=255)

                                                                                      cggggaaaaactttGCCCCCGAAAAAAAAACGGTTGTT‑GGG‑TTTACCGGTTGGTTGAGTTGAAGCAACCGGCCAATTG‑CCCCACAAAGCGGCCCT‑AAAAAAAAAATG‑CTGCCTTTATG‑CGTTTTTACGCCCGCAGTGGCGCGGAACA‑TATCC‑CCTTCGCAAGCCATACCAATTGGGCGTAATCCGTGGAGTACCGCTTCTGGTGCCATTTCCGCACTACAGGCACCAAATTCAATGaa                                                                                                                                                       <  1:762749/226‑1 (MQ=255)

                                                                                      cccggataaactttGCCGCCGGAGAACAAGCGGTTGTT‑GGC‑TTTACCGGTTGGTTGAGTTGAAGCAAACGGCCAATTG‑CCGCACATAACAGCCCT‑AAAGAAAAAATG‑CTGCCTTTATG‑CGTGTTTACGCCCGCAGTGGCGCGGAACA‑TATCA‑CCTTCGCAAGCCATACCAATTGGGCGTAATCCGTGGAGTACCGCTTCTGGTGCCATTTCCGCACTACAGGCACCAAATTCAATGaa                                                                                                                                                       <  2:816991/226‑1 (MQ=255)

                                                                                        cGGCAGAAACTTGCCGCCGTAGAACAAACGGTTGTT‑GGC‑GTTACCGGTTGGTTGAGTTGAAGCAAACGGCCAATTG‑CCGCACATAGCAGCCCT‑AAAGAAAAAATG‑CTGCCTTTATG‑CGTGTTTACGCCCGCAGTGGCGCGGAACA‑TATCA‑CCTTCGCAAGCCATACCAATTGGGCGTAATCCGTGGAGTACCGCTTCTGGTGCCATTTCTGCACTCCAGGCACCAAATTCAATGAAACg                                                                                                                                                    >  2:62586/1‑239 (MQ=255)

                                                                                              aaaCTTGCCGCCGTAGAACAAACGGTTGTT‑GGC‑GTTACCGGTTGGTTGAGTTGAAGCAAACGGCCAATTG‑CCGCACATAGCAGCCCT‑AAAGAAAAAATG‑CTGCCTTTATG‑CGTGTTTACGCCCGCAGTGGCGCGGAACA‑TATCA‑CCTTCGCAAGCCATACCAATTGGGCGTAATCCGTGGAGTACCGCTTCTGGTGCCATTTCCGCACTACAGGCACCAAATTCAATGAAACGGGGTa                                                                                                                                               >  2:737567/1‑238 (MQ=255)

                                                                                               accTTGCCGCAGTA‑AAAAAACGTTTTTTGGGC‑GTTACCGGTTGGTTGAGTGAAACCAAACGGCCAATTG‑CCGCACATAGCACCCCA‑AAAAAAAAAATG‑CTGCCTTTATG‑CGTGTTTACGCCCGGAGTGGCGCGGAACA‑TATCC‑CCTTCGCAAGCCATACCAATTGGGCGTAATCCGTGGAGTACCGCTTCTGGTGCCATTTCCGCACTACAGGCACCAAATTCAATGAAACGGGGTagc                                                                                                                                             <  1:225295/237‑1 (MQ=255)

                                                                                                               aCAAACGTTTGTT‑GGC‑TGTACCGGTTGGTTGAGTTGAAGCAAACGGCCAATTG‑CCGCACATAGCAGCCCT‑AAAGAAAAAATG‑CTGCCTTTAGG‑CGTGTTTACGCCCGCAGTGGCGCGGAACA‑TATCC‑CCTTCGCAAGCCATACCAATTGGGCGTAATCCGTGGAGTACCGCTTCTGGTGCCATTTCCGCACTACAGGCACCAAATTCAATGAAACGGGGTAGCCAGCCCTGAATCGCCa                                                                                                                             <  2:425561/239‑1 (MQ=255)

                                                                                                                   aCGGTTGTT‑GGC‑GTTACCGGTTGGTTGAGTTGAAGCAAACGGCCAATTG‑CCGCACATAGCAGCCCT‑AAAGAAAAAATG‑CTGCCTTTATG‑CGTGTTTACGCCCGCAGTGGCGCGGAACA‑TATCA‑CCTTCGCAAGCCATACCAATTGGGCGTAATCCGTGGAGTACCGCTTCTGGTGCCATTTCCGCCCTACAGGCACCAAATTCAATGAAACGGGGTAGCCAGCCCTGAATCGCCAacg                                                                                                                          >  2:722945/1‑238 (MQ=255)

                                                                                                                       ttgtt‑gGC‑GTTCCCGGTGGGTTGAGTTGAACCAAACGGCCAATTG‑CCGCACATAGC‑GCCCTAAAAGAAAAAATG‑CTGCCTTTATG‑CGTGTTTACGCCCGCGGTGGCGCGGAACA‑TATCC‑CCTTCGCAAGCCATACCAATTGGGCGTAATCCGTGGAGTACCGCTTCTGGTGCCATTTCCGCACTACAGGCACCAAATTCAATGAAACGGGGTAGCCAGCCCTGAATCGCCAGCGCGCt                                                                                                                      <  2:455329/238‑1 (MQ=255)

                                                                                                                           ttgggttttcacgggtttttggtttgaAACAAACGG‑CAATTGCCCGCAAATGGCAGCCCA‑AAAAAAAAAAGT‑CTCCTTTTATG‑CGTTTTTGCGCCGGCAGGGGCGCGGAACA‑TATCA‑CCTGCGCAAGCCATACCAATTGGGCGTAATCCGTGGAGTACCGCTTCTGGTGCCATTTCCGCACTACAGGCACCAAATTCAATGAAACGGGGTAGCCAGCCCTGAATCGCCAGCGCGCTGCg                                                                                                                   <  1:387273/216‑1 (MQ=255)

                                                                                                                                         ttggttgATTTGAAGCAAACGGCCAATTG‑CCGCAAATGGCAGCCCT‑AAAGAAAAAATG‑CTGCCTTTATG‑CGTGTTTACGCCCGCAGTGGCGCGGAACA‑TATCA‑CCTTCGCAAGCCATACCAATTGGGCGTAATCCGTGGAGTACCGCTTCTGGTGCCATTTCCGCACTACAGGCACCAAATTCAATGAAACGGGGTAGCCAGCCCTGAATCGCCAGCGCGCTGCGGTGGAAATCTTcc                                                                                                      <  2:792312/238‑1 (MQ=255)

                                                                                                                                          tggttgAGTGAAAGCAAACGGCAAATTG‑CCGCACATGGCAGCCTT‑AAAGAAAAAATG‑CTGCCTTTAGG‑CGTGTTTCCGCCCGAAGTGGCGCGGAACA‑TATCA‑CCTTCGCAAGCCATACCAATTGGGCGTAATCCGTGGAGTACCGCTTCTGGTGCCATTTCCGCACTACAGGCACCAAATTCAATGAAACGGGGTAGCCAGCCCTGAATCGCCAGCGCGCTGCGGTGGAAATCTTCCAg                                                                                                    <  2:308378/239‑1 (MQ=255)

                                                                                                                                            gggggtttgaAACAACCGCCCAATTG‑CCCCAAAAAGC‑GCCCT‑AAAAAAAAAACGCCCGCCTTTAGG‑CGTTTTTCCGCCGGGGGGGGCCCGGAACA‑TATCC‑CCTCCGAAAGCCATACCAATTGGGCGTAATCCGTGGAGTACCGCTTCTGGTGCCATTTCCGCACTACAGGCACCAAATTCAATGAAACGGGGTAGCCAGCCCTGAATCGCCAGCGCGCTGCGGTGGAAATCTTCCAgcg                                                                                                  <  1:454308/233‑1 (MQ=255)

                                                                                                                                                      aGCAAACGGCCAATTG‑CCGCACATAGCAGCCCT‑AAAGAAAAAATG‑CTGCCTTTATG‑CGTGTTTACGCCCGCAGTGGCGCGGAACA‑TATCA‑CCTTCGCAAGCCATACCAATTGGGCGTAATCCGTGGAGTACCGCTTCTGGTGCCATTTCCGCCCTACAGGCACCAAATTCAATGAAACGGGGTAGCCAGCCCTGAATCGCCAGCGCGCTGCGGGGGAAATCTTCCAGCCCCATATCttt                                                                                        >  2:223043/1‑239 (MQ=255)

                                                                                                                                                           aCGGCCAATTG‑CCGCACATAGCAGCCCT‑AAAGAAAAAATG‑CTGCCTTTATG‑CGTGTTTACGCCCGCAGTGGCGCGGAACA‑TATCA‑CCTTCGCAAGCCATACCAATTGGGCGTAATCCGTGGAGTACCGCTTCTGGTGCCATTTCCGCACTACAGGCACCAAATTCAATGAAACGGGGTAGCCAGCCCTGAATCCCCAGCGCCCCGCGGGGGGAAACTTCCCACGCCAAATCttttggc                                                                                    >  1:8336/1‑234 (MQ=255)

                                                                                                                                                               gccaattccccacaaaggccgcCCA‑AAAAAAAAAAGG‑CTGCCTTTATG‑GGTGTTTACGCCCGGAGGGGCGGGGAACA‑TTCCC‑CCTTCCCAAGCCATACCAATTGGGCGTAATCCGTGGAGTACCGCTTCTGGTGCCATTTCCGCACTACAGGCACCAAATTCAATGAAACGGGGTAGCCAGCCCTGAATCGCCAGCGCGCTGCGGTGGAAATCTTCCAGCGCCATATCTTTGTGCGCAc                                                                                <  1:737567/219‑1 (MQ=255)

                                                                                                                                                               ccAATTG‑CCGCACATAGCAGCCCT‑AAAGAAAGAATG‑CTGCCTTTATG‑CGTGTTTACGCCCGCAGGGGCCCGGAACA‑TATCC‑CCTCCGCAAGCCATACCAATTGGGCGTAATCCGTGGAGTACCGCTTCTGGTGCCATTTCCGCACTACAGGCACCAAATTCAATGAAACGGGGTAGCCAGCCCTGAATCGCCAGCGCGCTGCGGTGGAAATCTTCCAGCGCCATATCTTTGTGCGCAc                                                                                <  2:743199/238‑1 (MQ=255)

                                                                                                                                                                     g‑ccgccAATAGCAGCCCT‑AAAGAAAAAAGG‑CGTCCTTTATG‑CGGTTTTACGCCCGCAGTGGCGCGGAACA‑TTTCC‑CCTTCGCAAGCCATACCAATTGGGCGTAATCCGTGGAGTACCGCTTCTGGTGCCATTTCCGCACTACAGGCACCAAATTCAATGAAACGGGGTAGCCAGCCCTGAATCGCCAGCGCGCTGCGGTGGAAATCTTCCAGCGCCATATCTTTGTGCGCACCGCAGtt                                                                         <  2:832434/239‑1 (MQ=255)

                                                                                                                                                                          cacaTAGCAGCCCT‑AAAGAAAAAATG‑CTGCCTTTATG‑CGTGTTTACGCCCGCAGTGGCGCGGAACA‑TATCA‑CCTTCGCAAGCCATACCAATTGGGCGTAATCCGTGGAGTACCGCTTCTGGTGCCATTTCCGCACTACAGGCACCAAATTCAATGAAACGGGGTAGCCAGCCCTGAATCGCCAGCGCGCTTCGGCGGAAATCTTCCAGCGCCATATCTTGTTGCAGCCCGCAGTTAAt                                                                      >  2:633753/1‑238 (MQ=255)

                                                                                                                                                                             ccacccccccT‑AAAAAAAAAATG‑CT‑TCTTTGTGACGTGTTCACGCCCGC‑GTGGGCCCGAACACTATCA‑CCTCGGCAAGCCATACCAATTGGGCGTAATCCGTGGAGTACCGCTTCTGGTGCCATTTCCGCACTACAGGCACCAAATTCAATGAAACGGGGTAGCCAGCCCTGAATCGCCAGCGCGCTGCGGTGGAAATCTTCCAGCGCCATATCTTTGTGCGCACCGCAGTTAATGCGa                                                                  <  1:439761/232‑1 (MQ=255)

                                                                                                                                                                               agcagcCCT‑AAAGAAAAAATG‑CTGCCTTTATG‑CGTGTTTACGCCCGCAGTGGCGCGGAACA‑TATCA‑CCTTCGCAAGCCATACCAATTGGGCGTAATCCGTGGAGTACCGCTTCTGGTGCCATTTCCGCACTACAGGCACCAAATTCAATGAAACGGGGTAGCCAGCCCTGAATCCCCAGAGCGCTGCGGTGGAAATCTTCAAGCGCCATATCTTTTTGCGCACCCCGGTTAAAGCGATc                                                                >  1:156945/1‑239 (MQ=255)

                                                                                                                                                                                    cccT‑AAAGAAAAAATG‑CTGCCTTTATG‑CGTGTTTACGCCCGCAGTGGCGCGGAACA‑TATCA‑CCTTCGCAAGCCATACCAATTGGGCGTAATCCGTGGAGTACCGCTTCTGGTGCCATTTCCGCACTACAGGCACCAAATTCAATGAAACGGGGTAGCCAGCCCTGAATCGCCAGCGCGCTCCGGTGGAAATCTTCCAGCGCCCTATCTTTGTGCGCCCCGCAGTTAATGCGATCCACGa                                                           >  2:88450/1‑239 (MQ=255)

                                                                                                                                                                                    cccT‑AAAGAAAAAATG‑CTGCCTTTATG‑CGTGTTTACGCCCGCAGTGGCGCGGAACA‑TATCA‑CCTTCGCAAGCCATACCAATTGGGCGTAATCCGTGGAGTACCGCTTCTGGTGCCATTTCCGCACTACAGGCACCAAATTCAATGAAACGGGGTAGCCAGCCCTGAATCGCCAGCGCGCCGCGGTGGAAATCCTCCACCGCCATATCTTTGTGCGCACCGCAGTTAATGCGATCCACGa                                                           >  2:824664/1‑239 (MQ=255)

                                                                                                                                                                                     ccT‑AAAGAAAAAATG‑CTGCCTTTATG‑CGTGTTTACGCCCGCAGTGGCGCGGAACA‑TATCA‑CCTTCGCAAGCCATACCAATTGGGCGTAATCCGTGGAGTACCGCTTCTGGTGCCATTTCCGCACTACAGGCACCAAATTCAATGAAACGGGGTAGCCAGCCCTGAATCGCCAGCGCGCTGCGGTGGAAATCTTCCAGCGCCATATCTTTGTGCGCACCGCCGTTAATGCGATCCACGAg                                                          >  2:860830/1‑239 (MQ=255)

                                                                                                                                                                                      ccaaaaaaaaaaaGT‑CTGCCTTTATG‑CGTGTTTCCGCCGTGAGTGGCGCGGAACA‑T‑TCACCCTTCGCAAGCCATACCAATTGGGCGTAATCCGTGGAGTACCGCTTCTGGTGCCATTTCCGCACTACAGGCACCAAATTCAATGAAACGGGGTAGCCAGCCCTGAATCGCCAGCGCGCTGCGGTGGAAATCTTCCAGCGCCATATCTTTGTGCGCACCGCAGTTAATGCGATCCACg                                                            <  2:162612/234‑1 (MQ=255)

                                                                                                                                                                                       t‑AAAGAAAAAATG‑CTGCCTTTATG‑CGTGTTTACGCCCGAAGGGGCGCGGAACA‑TATCC‑CCTTCGCAAGCCATACCAATTGGGCGTAATCCGTGGAGTACCGCTTCTGGTGCCATTTCCGCACTACAGGCACCAAATTCAATGAAACGGGGTAGCCAGCCCTGAATCGCCAGCGCGCTGCGGTGGAAATCTTCCAGCGCCATATCTTTGTGCGCACCGCAGTTAATGCGATCCACGAGGc                                                        <  2:340413/239‑1 (MQ=255)

                                                                                                                                                                                          aaGAAAAAATG‑CTGCCTTTATG‑CGTGTTTACGCCCGCAGTGGCGCGGAACA‑TATCA‑CCTTCGCAAGCCATACCAATTGGGCGTAATCCGTGGAGTACCGCTTCTGGTGCCATTTCCGCACTACAGGCACCAAATTCAATGAAACGGGGTAGCCAGCCCTGAATCGCCAGCGCGCTGCGGTGGAAATCTTCCAGCGCCATATCTTTGTGCGCACCGCAGTTAATGCGATCCACGAgg                                                         >  2:482205/1‑236 (MQ=255)

                                                                                                                                                                                          aaGAAAAAATG‑CTGCCTTTATG‑CGTGTTTACGCCCGCAGTGGCGCGGAACA‑TATCA‑CCTTCGCAAGCCATACCAATTGGGCGTAATCCGTGGAGTACCGCTTCTGGTGCCATTTCCGCACTACAGGCACCAAATTCAATGAAACGGGGTAGCCAGCCCTGAATCGCCAGCGCGCTGCGGTGGAAATCTTCCAGCGCCATATCTTTGTGCGCACCGCAGTTAATGCGATCCACGAgg                                                         >  2:860283/1‑236 (MQ=255)

                                                                                                                                                                                          aaGAAAAAATG‑CTGCCTTTATG‑CGTGTTTACGCCCGCAGTGGCGCGGAACA‑TATCA‑CCTTCGCAAGCCATACAAATTGGGCGTAATCCGTGGAGTACCGCTTCTGGTGCCATTTCTGCACTACAGGCACCAAATTCAATGAAACGGGGTAGCCAGCCCTGAATCGCCAGCGCGCTGCGGTGGAAATCTTCCAGCGCCATATCTTTTTGCGCCCCGCAATTAATGCGTTCCCCGCgg                                                         >  2:749476/1‑236 (MQ=255)

                                                                                                                                                                                          aaGAAAAAATG‑CTGCCTTTATG‑CGTGTTTACGCCCGCAGTGGCGCGGAACA‑TAGCA‑CCTTCGCAAGCCATACCAATTGGGCGTAATCCGTGGAGTACCGCTTCTGGTGCCATTTCCGCACTACAGGCACCAAATTCAATGAAACGGGGTAGCCAGCCCTGAATCGCCAGCGCGCTTCGGTGGAAAACTTCCAGCGCCATATCTTTGTTAGCACCGCAGTTAAGGCGATcacctagg                                                         >  2:749464/1‑229 (MQ=255)

                                                                                                                                                                                           aGAAAAAATG‑CGTCTTTTATG‑CGTGTGTCCGCCCGCAGTGGCGCGGACCA‑TATCC‑CCTGCGCAAGCCATACCAATTGGGCGTAATCCGTGGAGTACCGCTTCTGGTGCCATTTCCGCACTACAGGCACCAAATTCAATGAAACGGGGTAGCCAGCCCTGAATCGCCAGCGCGCTGCGGTGGAAATCTTCCAGCGCCATATCTTTGTGCGCACCGCAGTTAATGCGATCCACGAGGCCTg                                                     <  2:690689/239‑1 (MQ=255)

                                                                                                                                                                                              aaaaaTGTCTGCTTTTTTG‑GGGTTTTCCGCCCGGGGGGGCGCGAAACA‑TTTCC‑CCTGCGAAAGCCATACCAATTGGGCGTAATCCGGGGAGTACCGCTTCTGGTGCCATTTCCGCACTACAGGCACCAAATTCAATGAAACGGGGTAGCCAGCCCTGAATCGCCAGCGCGCTGCGGTGGAAATCTTCCAGCGCCATATCTTTGTGCGCACCGCAGTTAATGCGATCCACGAGGCCTGGt                                                   <  1:66419/239‑1 (MQ=255)

                                                                                                                                                                                               aaaaTG‑CTGCCTGTAAG‑CGTTTTTGCGCCCGCAGTGGCGAGGAACA‑TATCC‑CCTTCGAAAGCCATCCCAATTGGGCGTAATCCGGGGAGTACCGCTTCTGGTGCCATTTCCGCACTACAGGCACCAAATTCAATGAAACGGGGTAGCCAGCCCTGAATCGCCAGCGCGCTGCGGTGGAAATCTTCCAGCGCCATATCTTTGTGCGCACCGCAGTTAATGCGATCCACGAGGCCTGGttt                                                 <  2:408654/239‑1 (MQ=255)

                                                                                                                                                                                                      ctgcCTTTATG‑CGTGTTTACGCCCGCAGTGGCGCGGAACA‑TATCA‑CCTTCGCAAGCCATACCAATTGGGCGTAATCCGTGGAGTACCGCTTCTGGTGCCATTTCCGCACTACAGGCACCAAATTCAATGAAACGGGGTAGCCAGCCCTGAATCGCCAGCGCGCTGCGGTGGAAATCTTCCAGCGCCATCTCTTTTGGCCCACCGCAGTGAATGCAATCCACGAGGCCTGGTTTCGGGGa                                           >  1:378994/1‑239 (MQ=255)

                                                                                                                                                                                                         ccTTTATG‑CGTGTTTACGCCCGCAGTGGCGCGGAACA‑TATCA‑CCTTCGCAAGCCATACCAATTGGGCGTAATCCGTGGAGTACCGCTTCTGGTGCCATTTCCGCACTACAGGCACCAAATTCAATGAAACGGGGTAGCCAGCCCTGAATCGCCAGCGCGCTGCGGTGGAAATCTTCCAGCGCCATATCTTTGTGCGCACCGCAGTTAATGCGATCCCCGAGGCCTGGTTTCGGTGGCAg                                        >  2:625842/1‑239 (MQ=255)

                                                                                                                                                                                                             tATG‑CGTTTTTACGCCCGCAGGGGCGCGGAACA‑TATCC‑CCTGCGCAAGCCATACCAATTGGGCGTAATCCGTGGAGTACCGCTTCTGGTGCCATTTCCGCACTACAGGCACCAAATTCAATGAAACGGGGTagc                                                                                                                                             <  1:334546/134‑1 (MQ=255)

                                                                                                                                                                                                                 ggttttttccgccgggtgtgggccgGAACT‑TTTCC‑CCTTCGCAATCCCTTCCAATTTGGGGTAATCCGTGGAGTACCGCTTCTGGGGCCATTTCCGCACTACAGGCACCAAATTCAATGAAACGGGGTAGCCAGCCCTGAATCGCCAGCGCGCTGCGGTGGAAATCTTCCAGCGCCATATCTTTGTGCGCACCGCAGTTAATGCGATCCACGAGGCCTGGTTTCGGTGACAGATTGACt                                 <  1:228082/216‑1 (MQ=255)

                                                                                                                                                                                                                 ggttgtTTACGCCGGCAGTGGCGCGGAACA‑TATCC‑CCATCGCAAGCCATACCAATTGGGCGTAATCCGTGGAGTACCGCTTCTGGTGCCATTTCCGCACTACAGGCACCAAATTCAATGAAACGGGGTAGCCAGCCCTGAATCGCCAGCGCGCTGCGGTGGAAATCTTCCAGCGCCATATCTTTGTGCGCACCGCAGTTAATGCGATCCACGAGGCCTGGTTTCGGTGACAGATTGACt                                 <  2:497746/236‑1 (MQ=255)

                                                                                                                                                                                                                     gtTTACGCCCGCAGTGGCGCGGAACA‑TATCA‑CCTTCGCAAGCCATACCAATTGGGCGTAATCCGTGGAGTACCGCTTCTGGTGCCATTTCCGCACTACAGGCACCAAATTCAATGAAACGGGGTAGCCAGCCCTGAATCGCCAGCGCGCTGCGGTGGAAATCTTCCAGCGCCATATCTTTGTGCGCACCGCAGTTAATGCGATCCACGAGGCCTGGTTTCGGTGACAGATTGACTtca                              >  2:145306/1‑238 (MQ=255)

                                                                                                                                                                                                                      tttACGCCCGCAGTGGCGCGGAACA‑TATCA‑CCTTCGCAAGCCATACCAATTGGGCGTAATCCGTGGAGTACCGCTTCTGGTGCCATTTCCGCACTACAGGCACCAAATTCAATGAAACGGGGTAGCCAGCCCTGAATCGCCAGCGCGCTGCGGTGGAAATCTTCAAGCGCCCACTCTTTGTGCGCCCCCCAGTTAATGCGACCACCGAGGCCTGGTTTCGGTGAAAGATTGGATtcaga                            >  1:74017/1‑238 (MQ=255)

                                                                                                                                                                                                                      tttACGCCCGCAGTGGCGCGGAACA‑TATCA‑CCTTCGCAAGCCATACCAATTGGGCGTAATCCGTGGAGTACCGCTTCTGGTGCCATTTCCGCACTACAGGCACCAAATTCAATGAAACGGGGTAGCCAGCCCTGAATCGCCACCGCGCTGCGGTGGAAATCTTCCAGCGCCCTATCTTTTTGCGCACCGCAGTTAATGCGACCCCCGAGGCCTGGTTTCGTGGACAAATTGCCttacgc                            >  1:313344/1‑235 (MQ=255)

                                                                                                                                                                                                                        tACGCCCGCAGTGGCGCGGAACA‑TATCA‑CCTTCGCAAGCCATACCAATTGGGCGTAATCCGTGGAGTACCGCTTCTGGTGCCATTTCCGCACTACAGGCACCAAATTCAATGAAACGGGGTAGCCAGCCCTGaa                                                                                                                                   >  2:334546/1‑134 (MQ=255)

                                                                                                                                                                                                                        tACGCCCGCAGTGGCGCGGAACA‑TATCA‑CCTTCGCAAGCCATACCAATTGGGCGTAATCCGTGGAGTACCGCTTCTGGTGCCATTTCCGCACTACAGGCACCAAATTCAATGAAACGGGGTAGCCAGCCCTGAATCGCCAGCGCGCTGCGGTGGAAATCTTCCAGCGCCATATCTTTGTGCGCACCGCAGTTAATGCGATCCACGAGGCCTGGTTTCGGTGACAGATTGACTtccgtca                          >  2:323917/1‑239 (MQ=255)

                                                                                                                                                                                                                              cGCAGTGGCGCGGAACA‑TATCA‑CCTTCGCAAGCCATACCAATTGGGCGTAATCCGTGGAGTACCGCTTCTGGTGCCATTTCCGCACTACAGGCACCAAATTCAATGAAACGGGGTAGCCAGCCCTGAATCGCCAGCGCGCTGCGGTGGAAATCTTCCAGCGCCATATCTTTGTGCGCACCGCAGTTAATGCGATCCACGAGGCCTGGTTTCGGTGACAGATTGACTTCAGTCAGCATgg                    <  2:156945/239‑1 (MQ=255)

                                                                                                                                                                                                                                cAGTGGCGCGGAACA‑TATCA‑CCTTCGCAAGCCATACCAATTGGGCGTAATCCGTGGAGTACCGCTTCTGGTGCCATTTCCGCACTACAGGCACCAAATTCAATGAAACGGGGTAGCCAGCCCTGAATCGCCAGCGCGCTGCGGTGGAAATCTTCCAGCGCCATATCTTTGTgcg                                                                                   >  1:642938/1‑174 (MQ=255)

                                                                                                                                                                                                                                cAGTGGCGCGGAACA‑TATCA‑CCTTCGCAAGCCATACCAATTGGGCGTAATCCGTGGAGTACCGCTTCTGGTGCCATTTCCGCACTACAGGCACCAAATTCAATGAAACGGGGTAGCCAGCCCTGAATCGCCAGCGCGCTGCGGTGGAAATCTTCCAGCGCCATATCTTTGTgcg                                                                                   <  2:642938/174‑1 (MQ=255)

                                                                                                                                                                                                                                     tgagccgaaattatCA‑CCTTAGCAAGCCATACCAATTGGGCTTAAGCCGTGGAGTTCCGCTTCTGGTGCCATTTCCGCACTACAGGCACCAAATTCAATGAAACGGGGTAGCCAGCCCTGAATCGCCAGCGCGCTGCGGTGGAAATCTTCCAGCGCCATATCTTTGTGCGCACCGCAGTTAATGCGATCCACGAGGCCTTGTTTCGGTGACAGATTGACTTCAGTCAGCATGgcgcgc               <  2:511776/227‑1 (MQ=255)

                                                                                                                                                                                                                                      cgcgGAACA‑TATCA‑CCTTCGCAAGCCATACCAATTGGGCGTAATCCGTGGAGTACCGCTTCTGGTGCCATTTCCGCACTACAGGCACCAAATTCAATGAAACGGGGTAGCCAGCCCTGAATCGCCAGCGCGCTGCGGTGGAAATCTTCCAGCGCCATATCTTTGTGCGCACCGCAGTTAATGCGATCCACGAGGCCTGGTTTCGGTGACAGATTGACTTCAGTCAGCATGGCGCGccc             >  2:238460/1‑237 (MQ=255)

                                                                                                                                                                                                                                            aCA‑TATCC‑CCTTCGAAAGCCATACCAATTGGGCGTAATCCGTGGAGTACCGGTTCTGGTGCCATTTCCGCACTACAGGCACCAAATTCAATGAAACGGGGTAGCCAGCCCTGAATCGCCAGCGCGCTGCGGTGGAAATCTTCCAGCGCCATATCTTTGTGCGCACCGCAGTTAATGCGATCCACGAGGCCTGGTTTCGGTGACAGATTGACTTCAGTCAGCATGGCGCGccagcccag       <  2:226881/238‑1 (MQ=255)

                                                                                                                                                                                                                                             cA‑TATCA‑CCTTCGCAAGCCATACCAATTGGGCGTAATCCGTGGAGTACCGCTTCTGGTGCCATTTCCGCACTACAGGCACCAAATTCAATGAAACGGGGTAGCCAGCCCTGAATCGCCAGCGCGCTGCGGTGGAAATCTTCCAGCGCCATATCTTTGTGCGCACCGCAGTTACTGCGATCCACGAGGCCTGGTTTCGGTGACAGATTGACTTCAGTCAGCATGGCGCGCCAGCCcagca     >  2:32247/1‑239 (MQ=255)

                                                                                                                                                                                                                                             cA‑TATCA‑CCTTCGCAAGCCATACCAATTGGGCGTAATCCGTGGAGTACCGCTTCTGGTGCCATTTCCGCACTACAGGCACCAAATTCAATGAAACGGGGTAGCCAGCCCTGAATCGCCAGCGCGCTGCGGTGGAAATCTTCCAGCGCCATATCTTTGTGCGCACCGCAGTTAATGCGATCCACGAGGCCTGGTTTCGGTGACAGATTGACTtcagtcag                         <  2:719090/219‑1 (MQ=255)

                                                                                                                                                                                                                                             cA‑TATCA‑CCTTCGCAAGCCATACCAATTGGGCGTAATCCGTGGAGTACCGCTTCTGGTGCCATTTCCGCACTACAGGCACCAAATTCAATGAAACGGGGTAGCCAGCCCTGAATCGCCAGCGCGCTGCGGTGGAAATCTTCCAGCGCCATATCTTTGTGCGCACCGCAGTTAATGCGATCCACGAGGCCTGGTTTCGGTGACAGATTGACTtcagtcag                         >  1:719090/1‑219 (MQ=255)

                                                                                                                                                                                                                                                 atCT‑CCTTCGCACGCCCTTCCAATGGGGCGTAATCGGTGGAGGACCGCTTCTGGTGCCATTTCCGCACTACAGGCACCAAATTCAATGAAACGGGGTAGCCAGCCCTGAATCGCCAGCGCGCTGCGGTGGAAATCTTCCAGCGTCATATCTTTGTGCGCACCGCAGTTAATGCGATCCACGAGGCCTGGTTTCGGTGACAGATTGACTTCAGTCAGCATGGCGCGCCAGCCCAGCAggg  <  2:702327/239‑1 (MQ=255)

TGCGCCGGTAAGGCCAAGCTGTTGGTACAACCGTTGACCTGCCGTCAGTTGTGAATTATTGGTACGCAGTTCGCGATCGGTCAGGCCACGGCAGAAACTTGCCGCCGTAGAACAAACGGTTGTT‑GGC‑GTTACCGGTTGGTTGAGTTGAAGCAAACGGCCAATTG‑CCGCACATAGCAGCCCT‑AAAGAAAAAATG‑CTGCCTTTATG‑CGTGTTTACGCCCGCAGTGGCGCGGAACA‑TATCA‑CCTTCGCAAGCCATACCAATTGGGCGTAATCCGTGGAGTACCGCTTCTGGTGCCATTTCCGCACTACAGGCACCAAATTCAATGAAACGGGGTAGCCAGCCCTGAATCGCCAGCGCGCTGCGGTGGAAATCTTCCAGCGCCATATCTTTGTGCGCACCGCAGTTAATGCGATCCACGAGGCCTGGTTTCGGTGACAGATTGACTTCAGTCAGCATGGCGCGCCAGCCCAGCAGGG  >  NC_000913/646973‑647445

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 13 ≤` `ATCG/ATCG` `< 26 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A