Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A11 F1 I1 R1 757 76.1 3598070 93.4% 3360597 108.6

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,732,319 G→A G40E (GGG→GAG)  xylG → D‑xylose ABC transporter dual domain ATPase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,732,3190GA100.0% 319.2 / NA 98G40E (GGG→GAG) xylGD‑xylose ABC transporter dual domain ATPase
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (51/47);  total (51/47)

TAGGTGGAGTCGTTATGCCTTATCTACTTGAAATGAAGAACATTACCAAAACCTTCGGCAGTGTGAAGGCGATTGATAACGTCTGCTTGCGGTTGAATGCTGGCGAAATCGTCTCACTTTGTGGGGAAAATGGGTCT‑GGTAAATCAACGCTGATGAAAGTGCTGTGTGGTATTTATCCCCATGGCTCCTACGAAGGCGAAATTATTTTTGCGGGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTAT  >  NC_000913/3732187‑3732448
                                                                                                                                    |                                                                                                                                  
tAGGTGGAGTCGTTATGCCTTATCTACTTGAAATGAAGAACATTACCAAAACCTTCGGCAGTGTGAAGGCGATTGATAACGTCTGCTTGCGGTTGAATGCTGGCGAAATCGTCTCACTTTGTGGGGAAAATGAGTCT‑gg                                                                                                                             <  2:897611/139‑1 (MQ=255)
  ggTGGAGTCGTTATGCCTTATCTACTTGAAATGAGGAACATTACCAAAACCTTCGGCAGTGTGAAGGCGATTGATAACGTCTGCTTGCGGTTGAATGCTGGCGAAATCGTCTCACTTTGTGGGGAAAATGAGTCT‑GGTa                                                                                                                           >  2:55055/1‑139 (MQ=255)
       aGTCGTTATGCCTTATCTACTTGAAATGAAGAACATTACCAAAACCTTCGGCAGTGTGAAGGCGATTGATAACGTCTGCTTGCGGTTGAATGCTGGCGAAATCGTCTCACTTTGTGGGGAAAATGAGTCT‑GGTAAATCa                                                                                                                      >  2:1050396/1‑139 (MQ=255)
            ttATGCCTTATCTACTTGAAATGAAGAACATTACCAAAACCTTCGGCAGTGTGAAGGCGATTGATAACGTCTGCTTGCGGTTGAATGCTGGCGAAATCGTCTCACTTTGTGGGGAAAATGAGTCT‑GGTAAATCAACg                                                                                                                   <  2:1503703/137‑1 (MQ=255)
            ttATGCCTTATCTACTTGAAATGAAGAACATTACCAAAACCTTCGGCAGTGTGAAGGCGATTGATAACGTCTGCTTGCGGTTGAATGCTGGCGAAATCGTCTCACTTTGTGGGGAAAATGAGTCT‑GGTAAATCAACg                                                                                                                   >  1:1503703/1‑137 (MQ=255)
            ttATGCCTTATCTACTTGAAATGAAGAACATTACCAAAACCTTCGGCAGTGTGAAGGCGATTGATAACGTCTGCTTGCGGTTGAATGCTGGCGAAATCGTCTCACTTTGTGGGGAAAATGAGTCT‑GGTAAATCAACGCt                                                                                                                 <  1:1050396/139‑1 (MQ=255)
             tATGCCTTATCTACTTGAAATGAAGAACATTACCAAAACCTTCGGCAGTGTGAAGGCGATTGATAACGTCTGCTTGCGGTTGAATGCTGGCGAAATCGTCTCACTTTGTGGGGAAAATGAGTCT‑GGTAAATCAACGCtg                                                                                                                >  2:610765/1‑139 (MQ=255)
                    tATCTACTTGAAATGAAGAACATTACCAAAACCTTCGGCAGTGTGAAGGCGATTGATAACGTCTGCTTGCGGTTGAATGCTGGCGAAATCGTCTCACTTTGTGGGGAAAATGAGTCT‑GGTAAAt                                                                                                                        >  1:485664/1‑124 (MQ=255)
                    tATCTACTTGAAATGAAGAACATTACCAAAACCTTCGGCAGTGTGAAGGCGATTGATAACGTCTGCTTGCGGTTGAATGCTGGCGAAATCGTCTCACTTTGTGGGGAAAATGAGTCT‑GGTAAAt                                                                                                                        <  2:485664/124‑1 (MQ=255)
                    tATCTACTTGAAATGAAGAACATTACCAAAACCTTCGGCAGTGTGAAGGCGATTGATAACGTCTGCTTGCGGTTGAATGCTGGCGAAATCGTCTCACTTTGTGGGGAAAATGAGTCT‑GGTAAATCAACGCt                                                                                                                 <  1:1476094/131‑1 (MQ=255)
                    tATCTACTTGAAATGAAGAACATTACCAAAACCTTCGGCAGTGTGAAGGCGATTGATAACGTCTGCTTGCGGTTGAATGCTGGCGAAATCGTCTCACTTTGTGGGGAAAATGAGTCT‑GGTAAATCAACGCt                                                                                                                 >  2:1476094/1‑131 (MQ=255)
                     aTCTACTTGAAATGAAGAACATTACCAAAACCTTCGGCAGTGTGAAGGCGATTGATAACGTCTGCTTGCGGTTGAATGCTGGCGAAATCGTCTCACTTTGTGGGGAAAATGAGTCT‑GGTAAATCAACGCTGATGAAAGt                                                                                                        >  1:1500926/1‑139 (MQ=255)
                      tCTACTTGAAATGAAGAACATTACCAAAACCTTCGGCAGTGTGAAGGCGATTGATAACGTCTGCTTGCGGTTGAATGCTGGCGAAATCGTCTCACTTTGTGGGGAAAATGAGTCT‑GGTAAATCAACGCTGATGAAAGTg                                                                                                       >  1:407133/1‑139 (MQ=255)
                      tCTACTTGAAATGAAGAACATTACCAAAACCTTCGGCAGTGTGAAGGCGATTGATAACGTCTGCTTGCGGTTGAATGCTGGCGAAATCGTCTCACTTTGTGGGGAAAATGAGTCT‑GGTAAATCAACGCTGATGAAAGTg                                                                                                       <  2:919198/139‑1 (MQ=255)
                       cTACTTGAAATGAAGAACATTACCAAAACCTTCGGCAGTGTGAAGGCGATTGATAACGTCTGCTTGCGGTTGAATGCTGGCGAAATCGTCTCACTTTGTGGGGAAAATGAGTCT‑GGTAAATCAACGCTGATGAAAGTGc                                                                                                      <  1:1481665/139‑1 (MQ=255)
                        tACTTGAAATGAAGAACATTACCAAAACCTTCGGCAGTGTGAAGGCGATTGATAACGTCTGCTTGCGGTTGAATGCTGGCGAAATCGTCTCACTTTGTGGGGAAAATGAGTCT‑GGTAAATCAACGCTGATGAAAGTGCt                                                                                                     <  1:1410268/139‑1 (MQ=255)
                          cTTGAAATGAAGAACATTACCAAAACCTTCGGCAGTGTGAAGGCGATTGATAACGTCTGCTTGCGGTTGAATGCTGGCGAAATCGTCTCACTTTGTGGGGAAAATGAGTCT‑GGTAAATCAACGCtgatga                                                                                                            >  2:1639303/1‑130 (MQ=255)
                          cTTGAAATGAAGAACATTACCAAAACCTTCGGCAGTGTGAAGGCGATTGATAACGTCTGCTTGCGGTTGAATGCTGGCGAAATCGTCTCACTTTGTGGGGAAAATGAGTCT‑GGTAAATCAACGCtgatga                                                                                                            <  1:1639303/130‑1 (MQ=255)
                          cTTGAAATGAAGAACATTACCAAAACCTTCGGCAGTGTGAAGGCGATTGATAACGTCTGCTTGCGGTTGAATGCTGGCGAAATCGTCTCACTTTGTGGGGAAAATGAGTCT‑GGTAAATCAACGCTGATGAAAGTGCtgt                                                                                                   >  2:1334357/1‑139 (MQ=255)
                           ttGAAATGAAGAACATTACCAAAACCTTCGGCAGTGTGAAGGCGATTGATAACGTCTGCTTGCGGTTGAATGCTGGCGAAATCGTCTCACTTTGTGGGGAAAATGAGTCT‑GGTAAATCa                                                                                                                      <  2:1238826/119‑1 (MQ=255)
                           ttGAAATGAAGAACATTACCAAAACCTTCGGCAGTGTGAAGGCGATTGATAACGTCTGCTTGCGGTTGAATGCTGGCGAAATCGTCTCACTTTGTGGGGAAAATGAGTCT‑GGTAAATCa                                                                                                                      >  1:1238826/1‑119 (MQ=255)
                           ttGAAATGAAGAACATTACCAAAACCTTCGGCAGTGTGAAGGCGATTGATAACGTCTGCTTGCGGTTGAATGCTGGCGAAATCGTCTCACTTTGTGGGGAAAATGAGTCT‑GGTAAATCAACGCtgatga                                                                                                            <  1:647607/129‑1 (MQ=255)
                           ttGAAATGAAGAACATTACCAAAACCTTCGGCAGTGTGAAGGCGATTGATAACGTCTGCTTGCGGTTGAATGCTGGCGAAATCGTCTCACTTTGTGGGGAAAATGAGTCT‑GGTAAATCAACGCtgatga                                                                                                            >  2:647607/1‑129 (MQ=255)
                           ttGAAATGAAGAACATTACCAAAACCTTCGGCAGTGTGAAGGCGATTGATAACGTCTGCTTGCGGTTGAATGCTGGCGAAATCGTCTCACTTTGTGGGGAAAATGAGTCT‑GGTAAATCAACGCTGATGAAAGTGCtgtg                                                                                                  <  2:1269132/139‑1 (MQ=255)
                           ttGAAATGAAGAACATTACCAAAACCTTCGGCAGTGTGAAGGCGATTGATAACGTCTGCTTGCGGTTGAATGCTGGCGAAATCGTCTCACTTTGTGGGGAAAATGAGTCT‑GGTAAATCAACGCTGATGAAAGTGCtgtg                                                                                                  >  2:878682/1‑139 (MQ=255)
                           ttGAAATGAAGAACATTACCAAAACCTTCGGCAGTGTGAAGGCGATTGATAACGTCTGCTTGCGGTTGAATGCTGGCGAAATCGTCTCACTTTGTGGGGAAAATGAGTCT‑GGTAAATCAACGCTGATGAAAGTGCtgtg                                                                                                  <  1:1334357/139‑1 (MQ=255)
                            tGAAATGAAGAACATTACCAAAACCTTCGGCAGTGTGAAGGCGATTGATAACGTCTGCTTGCGGTTGAATGCTGGCGAAATCGTCTCACTTTGTGGGGAAAATGAGTCT‑GGTAAATCAACGCTGATGAAAGTGCtgtgt                                                                                                 <  2:1500926/139‑1 (MQ=255)
                             gAAATGAAGAACATTACCAAAACCTTCGGCAGTGTGAAGGCGATTGATAACGTCTGCTTGCGGTTGAATGCTGGCGAAATCGTCTCACTTTGTGGGGAAAATGAGTCT‑GGTAAATCAACGCTGATGAAAGTGCtgtgtg                                                                                                >  2:1794577/1‑139 (MQ=255)
                                   aagaaCATTACCAAAACCTTCGGCAGTGTGAAGGCGATTGATAACGTCTGCTTGCGGTTGAATGCTGGCGAAATCGTCTCACTTTGTGGGGAAAATGAGTCT‑GGTAAATCAACGCTGATGAAAGTGCTGTGTGGTAttt                                                                                          >  1:1575829/1‑139 (MQ=255)
                                    agaaCATTACCAAAACCTTCGGCAGTGTGAAGGCGATTGATAACGTCTGCTTGCGGTTGAATGCTGGCGAAATCGTCTCACTTTGTGGGGAAAATGAGTCA‑GGTAAATCAACGCTGATGAAAGTGCTGTGTGGTATTTa                                                                                         >  2:418468/1‑139 (MQ=255)
                                      aaCATTACCAAAACCTTCGGCAGTGTGAAGGCGATTGATAACGTCTGCTTGCGGTTGAATGCTGGCGAAATCGTCTCACTTTGTGGGGAAAATGAGTCT‑GGTAAATCAACGCTGATGAAAGTGCTGTGTGGTATTTATc                                                                                       >  2:1478151/1‑139 (MQ=255)
                                         catACCAAAACCTTCGGCAGTGTGAAGGCGATTGATAACGTCTGCTTGCGGTTGAATGCTGGCGAAATCGTCTCACTTTGTGGGGAAAATGAGTCT‑GGTAAATCAACGCTGATGAAAGTGCTGTGTGGTATTTATcccc                                                                                    <  2:1345555/137‑1 (MQ=255)
                                         aTTACCAAAACCTTCGGCAGTGTGAAGGCGATTGATAACGTCTGCTTGCGGTTGAATGCTGGCGAAATCGTCTCACTTTGTGGGGAAAATGAGTCT‑GGTAAATCAACGCTGATGAAAGTGCTGTGTGGTATTTATcccc                                                                                    <  2:1443232/139‑1 (MQ=255)
                                          ttACCAAAACCTTCGGCAGTGTGAAGGCGATTGATAACGTCTGCTTGCGGTTGAATGCTGGCGAAATCGTCTCACTTTGTGGGGAAAATGAGTCT‑GGTAAATCAACGCTGATGAAAGTGCTGTGTGGTATTTATCCCCa                                                                                   <  1:1794577/139‑1 (MQ=255)
                                           tACCAAAACCTTCGGCAGTGTGAAGGCGATTGATAACGTCTGCTTGCGGTTGAATGCTGGCGAAATCGTCTCACTTTGTGGGGAAAATGAGTCT‑GGTAAATCAACGCTGATGAAAGTGCtgtg                                                                                                  <  2:1574750/123‑1 (MQ=255)
                                           tACCAAAACCTTCGGCAGTGTGAAGGCGATTGATAACGTCTGCTTGCGGTTGAATGCTGGCGAAATCGTCTCACTTTGTGGGGAAAATGAGTCT‑GGTAAATCAACGCTGATGAAAGTGCtgtg                                                                                                  >  1:1574750/1‑123 (MQ=255)
                                           tACCAAAACCTTCGGCAGTGTGAAGGCGATTGATAACGTCTGCTTGCGGTTGAATGCTGGCGAAATCGTCTCACTTTGTGGGGAAAATGAGTCT‑GGTAAATCAACGCTGATGAAAGTGCTGTGTGGTATTTATCCCCAt                                                                                  >  1:709712/1‑139 (MQ=255)
                                                aaaCCTTCGGCAGTGTGAAGGCGATTGATAACGTCTGCTTGCGGTTGAATGCTGGCGAAATCGTCTCACTTTGTGGGGAAAATGAGTCT‑gg                                                                                                                             >  2:1602928/1‑91 (MQ=255)
                                                aaaCCTTCGGCAGTGTGAAGGCGATTGATAACGTCTGCTTGCGGTTGAATGCTGGCGAAATCGTCTCACTTTGTGGGGAAAATGAGTCT‑gg                                                                                                                             <  1:1602928/91‑1 (MQ=255)
                                                aaaCCTTCGGCAGTGTGAAGGCGATTGATAACGTCTGCTTGCGGTTGAATGCTGGCGAAATCGTCTCACTTTGTGGGGAAAATGAGTCT‑GGTAAATCAACGCTGATGAAAGTGCTGTGTGGTATTTATCCCCATGGCTc                                                                             >  2:977548/1‑139 (MQ=255)
                                                  aCCTTCGGCAGTGTGAAGGCGATTGATAACGTCTGCTTGCGGTTGAATGCTGGCGAAATCGTCTCACTTTGTGGGGAAAATGAGTCT‑GGTAAATCAACGCTGATGAAAGTGCTGTGTGGTATTTATCCCCATGGCTCCt                                                                           >  1:566179/1‑139 (MQ=255)
                                                   ccTTCGGCAGTGTGAAGGCGATTGATAACGTCTGCTTGCGGTTGAATGCTGGCGAAATCGTCTCACTTTGTGGGGAAAATGAGTCT‑GGTAAATCAACGCTGATGAAAGTGCt                                                                                                     <  2:1470542/112‑1 (MQ=255)
                                                   ccTTCGGCAGTGTGAAGGCGATTGATAACGTCTGCTTGCGGTTGAATGCTGGCGAAATCGTCTCACTTTGTGGGGAAAATGAGTCT‑GGTAAATCAACGCTGATGAAAGTGCt                                                                                                     >  1:1470542/1‑112 (MQ=255)
                                                             tgtgAAGGCGATTGATAACGTCTGCTTGCGGTTGAATGCTGGCGAAATCGTCTCACTTTGTGGGGAAAATGAGTCT‑GGTAAATCAACGCTGATGAAAGTGCTGTGTGGTATTTATCCCCATGGCTCCTACGAAGGCGaa                                                                >  1:874093/1‑139 (MQ=255)
                                                              gtgAAGGCGATTGATAACGTCTGCTTGCGGTTGAATGCTGGCGAAATCGTCTCACTTTGTGGGGAAAATGAGTCT‑GGTAAATCAACGCt                                                                                                                 >  2:90630/1‑89 (MQ=255)
                                                              gtgAAGGCGATTGATAACGTCTGCTTGCGGTTGAATGCTGGCGAAATCGTCTCACTTTGTGGGGAAAATGAGTCT‑GGTAAATCAACGCt                                                                                                                 <  1:90630/89‑1 (MQ=255)
                                                                       aTTGATAACGTCTGCTTGTGGTTGAATGCTGGCGAAATCGTCTCACTTTGTGGGGAAAATGAGTCT‑GGTAAATCAACGCTGATGAAAGTGCt                                                                                                     <  2:1103451/92‑1 (MQ=255)
                                                                       aTTGATAACGTCTGCTTGCGGTTGAATGCTGGCGAAATCGTCTCACTTTGTGGGGAAAATGAGTCT‑GGTAAATCAACGCTGATGAAAGTGCt                                                                                                     >  1:1103451/1‑92 (MQ=255)
                                                                       aTTGATAACGTCTGCTTGCGGTTGAATGCTGGCGAAATCGTCTCACTTTGTGGGGAAAATGAGTCT‑GGTAAATCAACGCTGATGAAAGTGCt                                                                                                     <  1:1672190/92‑1 (MQ=255)
                                                                       aTTGATAACGTCTGCTTGCGGTTGAATGCTGGCGAAATCGTCTCACTTTGTGGGGAAAATGAGTCT‑GGTAAATCAACGCTGATGAAAGTGCt                                                                                                     >  2:1672190/1‑92 (MQ=255)
                                                                       aTTGATAACGTCTGCTTGCGGTTGAATGCTGGCGAAATCGTCTCACTTTGTGGGGAAAATGAGTCT‑GGTAAATCAACGCTGATGAAAGTGCTGTGTGGTATTTATCCCCATGGCTCCTACGAAGGCGAAATTATTTTTg                                                      >  1:149824/1‑139 (MQ=255)
                                                                         tGATAACGTCTGCTTGCGGTTGAATGCTGGCGAAATCGTCTCACTTTGTGGGGAAAATGAGTCT‑GGTAAATCAACGCTGATGAAAGTGCTGTGTGGTATTTATCCCCATGGCTCCTACGAAGGCGAAATTATTTTTg                                                      >  2:53187/1‑137 (MQ=255)
                                                                         tGATAACGTCTGCTTGCGGTTGAATGCTGGCGAAATCGTCTCACTTTGTGGGGAAAATGAGTCT‑GGTAAATCAACGCTGATGAAAGTGCTGTGTGGTATTTATCCCCATGGCTCCTACGAAGGCGAAATTATTTTTg                                                      <  1:53187/137‑1 (MQ=255)
                                                                          gATAACGTCTGCTTGCGGTTGAATGCTGGCGAAATCGTCTCACTTTGTGGGGAAAATGAGTCT‑GGTAAATCAACGCTGATGAAAGTGCTGTGTGGTATTTATCCCCATGGCTCCTACGAAGGCGAAATTATTTTTGCgg                                                   <  2:566179/139‑1 (MQ=255)
                                                                          gATAACGTCTGCTTGCGGTTGAATGCTGGCGAAATCGTCTCACTTTGTGGGGAAAATGAGTCT‑GGTAAATCAACGCTGATGAAAGTGCTGTGTGGTATTTATCCCCATGGCTCCTACGAAGGCGAAATTATTTTTGCgg                                                   <  2:407133/139‑1 (MQ=255)
                                                                              aCGTCTGCTTGCGGTTGAATGCTGGCGAAATCGTCTCACTTTGTGGGGAAAATGAGTCT‑GGTAAATCAACGCTGATGAAAGTg                                                                                                       >  2:832079/1‑83 (MQ=255)
                                                                              aCGTCTGCTTGCGGTTGAATGCTGGCGAAATCGTCTCACTTTGTGGGGAAAATGAGTCT‑GGTAAATCAACGCTGATGAAAGTg                                                                                                       <  1:832079/83‑1 (MQ=255)
                                                                              aCGTCTGCTTGCGGTTGAATGCTGGCGAAATCGTCTCACTTTGTGGGGAAAATGAGTCT‑GGTAAATCAACGCTGATGAAAGTGCTGTGTGGTATTTATCCCCATGGCTCCTACGAAGGCGAAATTATTTTTGCGGgaga                                               >  1:919581/1‑139 (MQ=255)
                                                                                   tGCTTGCGGTTGAATGCTGGCGAAATCGTCTCACTTTGTGGGGAAAATGAGTCT‑GGTAAATCAACGCTGATGAAAGTGCTGTGTGGTATTTATCCCCATGGCTCCTACGAAGGCGAAATTATTTTTGCGGGAGAAgaga                                          >  1:670814/1‑139 (MQ=255)
                                                                                    gCTTGCGGTTGAATGCTGGCGAAATCGTCTCACTTTGTGGGGAAAATGAGTCT‑GGTAAATCAACGCTGATGAAAGTGCTGTGTGGTATTTATCCCCATGGCTCCTACGAAGGCGAAATTATTTTTGCGGGAGAAGAGAt                                         >  2:928604/1‑139 (MQ=255)
                                                                                     cTTGCGGTTGAATGCTGGCGAAATCGTCTCACTTTGTGGGGAAAATGAGTCT‑GGTAAATCAACGCTGATGAAAGTGCTGTGTGGTATTTATCCCCATGGCTCCTACg                                                                        >  1:1772182/1‑107 (MQ=255)
                                                                                     cTTGCGGTTGAATGCTGGCGAAATCGTCTCACTTTGTGGGGAAAATGAGTCT‑GGTAAATCAACGCTGATGAAAGTGCTGTGTGGTATTTATCCCCATGGCTCCTACg                                                                        <  2:1772182/107‑1 (MQ=255)
                                                                                     cTTGCGGTTGAATGCTGGCGAAATCGTCTCACTTTGTGGGGAAAATGAGTCT‑GGTAAATCAACGCTGATGAAAGTGCTGTGTGGTATTTATCCCCATGGCTCCTACGAAGGCGAAATTATTTTTGCGGGAGAAGAGAtt                                        <  2:919581/139‑1 (MQ=255)
                                                                                     cTTGCGGTTGAATGCTGGCGAAATCGTCTCACTTTGTGGGGAAAATGAGTCT‑GGTAAATCAACGCTGATGAAAGTGCTGTGTGGTATTTATCCCCATGGCTCCTACGAAGGCGAAATTATTTTTGCGGGAGAAGAGAtt                                        >  2:184847/1‑139 (MQ=255)
                                                                                         cGGTTGAATGCTGGCGAAATCGTCTCACTTTGTGGGGAAAATGAGTCT‑GGTAAATCAACGCTGATGAAAGTGCTGTGTGGTATTTATCCCCATGGCTCCTACGAAGGCGAAATTATTTTTGCGGGAGAAGAGATTCAgg                                    <  1:1650578/139‑1 (MQ=255)
                                                                                             tGAATGCTGGCGAAATCGTCTCACTTTGTGGGGAAAATGAGTCT‑GGTAAATCAACGCTGATGAAAGTGCTGTGTGGTATTTATCCCCATGGCTCCTACGAAGGCGAAATTATTTTTGCGGGAGAAGAGATTCAGGCGAg                                >  1:734125/1‑139 (MQ=255)
                                                                                               aaTGCTGGCGAAATCGTCTCACTTTGTGGGGAAAATGAGTCT‑GGTAAATCAACGCTGATGAAAGTGCtg                                                                                                    <  1:634086/69‑1 (MQ=255)
                                                                                               aaTGCTGGCGAAATCGTCTCACTTTGTGGGGAAAATGAGTCT‑GGTAAATCAACGCTGATGAAAGTGCtg                                                                                                    >  2:634086/1‑69 (MQ=255)
                                                                                               aaTGCTGGCGAAATCGTCTCACTTTGTGGGGAAAATGAGTCT‑GGTAAATCAACGCTGATGAAAGTGCTGTGTGGTATTTATCCCCATGGCTCCTACGAAGGCGAAATTATTTTTGCGGGAGAAGAGATTCAGGCGAGTc                              >  1:1092019/1‑139 (MQ=255)
                                                                                                 tGCTGGCGAAATCGTCTCACTTTGTGGGGAAAATGAGTCT‑GGTAAATCAACGCTGATGAAAGTGCTCTGTGGTATTTATCCCCATGGCTCCTACGAAGGCGAAATTATTTTTGCGGGAGAAGAGGTTCAGGCGAGTcac                            <  2:1092019/139‑1 (MQ=255)
                                                                                                   cTGGCGAAATCGTCTCACTTTGTGGGGAAAATGAGTCT‑GGTAAATCAACGCTGATGAAAGTGCTGTGTGGTATTTATCCCCATGGCTCCTACGAAGGCGAAATTATTTTTGCGGGAGAAGAGATTCAGGCGAGTCACAt                          <  2:734125/139‑1 (MQ=255)
                                                                                                    tGGCGAAATCGTCTCACTTTGTGGGGAAAATGAGTCT‑GGTAAATCAACg                                                                                                                   <  1:1007374/49‑1 (MQ=255)
                                                                                                    tGGCGAAATCGTCTCACTTTGTGGGGAAAATGAGTCT‑GGTAAATCAACg                                                                                                                   >  2:1007374/1‑49 (MQ=255)
                                                                                                      gCGAAATCGTCTCACTTTGTGGGGAAAATGAGTCTGGGTAAATCAACGCTGATGAAAGTGCTGTGTGGTATTTATCCCCATGGCTCCTACGAAGGCGAAATTATTTTTGCGGGAGAAGAGATTCAGGCGAGTCACATcc                        >  1:668453/1‑139 (MQ=255)
                                                                                                      gCGAAATCGTCTCACTTTGTGGGGAAAATGAGTCT‑GGTAAATCAACGCTGATGAAAGTGCTGTGTGGTATTTATCCCCATGGCTCCTACGAAGGCGAAATTATTTTTGCGGGAGAAGAGATTCAGGCGAGTCACAt                          >  2:547641/1‑136 (MQ=255)
                                                                                                      gCGAAATCGTCTCACTTTGTGGGGAAAATGAGTCT‑GGTAAATCAACGCTGATGAAAGTGCTGTGTGGTATTTATCCCCATGGCTCCTACGAAGGCGAAATTATTTTTGCGGGAGAAGAGATTCAGGCGAGTCACAt                          <  1:547641/136‑1 (MQ=255)
                                                                                                      gCGAAATCGTCTCACTTTGTGGGGAAAATGAGTCT‑GGTAAATCAACGCTGATGAAAGTGCTGTGTGGTATTTATCCCCATGGCTCCTACGAAGGCGAAATTATTTTTGCGGGAGAAGAGATTCAGGCGAGTCACATCcg                       >  1:1117318/1‑139 (MQ=255)
                                                                                                        gAAATCGTCTCACTTTGTGGGGAAAATGAGTCT‑GGTAAATCAACGCTGATGAAAGTGCTGTGTGGTATTTATCCCCATGGCTCCTACGAAGGCGAAATTATTTTTGCGGGAGAAGAGATTCAGGCGAGTCACATCcgcg                     <  2:149824/139‑1 (MQ=255)
                                                                                                             cGTCTCACTTTGTGGGGAAAATGAGTCT‑GGTAAATCAACGCTGATGAAAGTGCTGTGTGGTATTTATCCCCATGGCTCCTACGAAGGCGAAATTATTTTTGCGGGAGAAGAGATTCAGGCGAGTCACATCCGCGATAcc                <  2:1117318/139‑1 (MQ=255)
                                                                                                                ctcACTTTGTGGGGAAAATGAGTCT‑GGTAAATCAACGCTGATGAAAGTGCTGTGTGGTATTTATCCCCATGGCTCCTACGAAGGCGAAATTATTTTTGCGGGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCg               <  2:564711/137‑1 (MQ=255)
                                                                                                                ctcACTTTGTGGGGAAAATGAGTCT‑GGTAAATCAACGCTGATGAAAGTGCTGTGTGGTATTTATCCCCATGGCTCCTACGAAGGCGAAATTATTTTTGCGGGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCg               >  1:564711/1‑137 (MQ=255)
                                                                                                                ctcACTTTGTGGGGAAAATGAGTCT‑GGTAAATCAACGCTGATGAAAGTGCTGTGTGGTATTTATCCCCATGGCTCCTACGAAGGCGAAATTATTTTTGCGGGAGAAGAGATTCAGGCGAGTCACATCCACGATACCGaa             >  1:1221682/1‑139 (MQ=255)
                                                                                                                       tgtgGGGAAAATGAGTCT‑GGTAAATCAACGCTGATGAAAGTGCTGTGTGGTATTTATCCCCATGGCTCCTACGAAGGCGAAATTATTTTTGCGGGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAg      >  2:447842/1‑139 (MQ=255)
                                                                                                                         tgGGGAAAATGAGTCT‑GGTAAATCAACGCTGATGAAAGTGCTGTGTGGTATTTATCCCCATGGCTCCTACGAAGGCGAAATTATTTTTg                                                      >  2:388632/1‑89 (MQ=255)
                                                                                                                         tgGGGAAAATGAGTCT‑GGTAAATCAACGCTGATGAAAGTGCTGTGTGGTATTTATCCCCATGGCTCCTACGAAGGCGAAATTATTTTTg                                                      <  1:388632/89‑1 (MQ=255)
                                                                                                                           gggAAAATGAGTCT‑GGTAAATCAACGCTGATGAAAGTGCTGTGTGGTATTTATCCCCATGGCTCCTACGAAGGCGAAATTATTTTTGCGGGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTAt  <  1:928604/139‑1 (MQ=255)
                                                                                                                           gggAAAATGAGTCT‑GGTAAATCAACGCTGATGAAAGTGCTGTGTGGTATTTATCCCCATGGCTCCTACGAAGGCGAAATTATTTTTGCGGGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTAt  >  2:739388/1‑139 (MQ=255)
                                                                                                                           gggAAAATGAGTCT‑GGTAAATCAACGCTGATGAAAGTGCTGTGTGGTATTTATCCCCATGGCTCCTACGAAGGCGAAATTATTTTTGCGGGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTAt  <  1:681388/139‑1 (MQ=255)
                                                                                                                           gggAAAATGAGTCT‑GGTAAATCAACGCTGATGAAAGTGCTGTGTGGTATTTATCCCCATGGCTCCTACGAAGGCGAAATTATTTTTGCGGGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTAt  <  2:709712/139‑1 (MQ=255)
                                                                                                                           gggAAAATGAGTCT‑GGTAAATCAACGCTGATGAAAGTGCTGTGTGGTATTTATCCCCATGGCTCCTACGAAGGCGAAATTATTTTTGCGGGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTAt  <  1:977548/139‑1 (MQ=255)
                                                                                                                              aaaaTGAGTCT‑GGTAAATCAACGCTGATGAAAGTGc                                                                                                      <  1:13331/36‑1 (MQ=37)
                                                                                                                              aaaaTGAGTCT‑GGTAAATCAACGCTGATGAAAGTGc                                                                                                      >  2:13331/1‑36 (MQ=37)
                                                                                                                               aaaTGAGTCT‑GGTAAATCAACGCTGATGAAAGTGCTGTGTGGTATTTATCCCCa                                                                                   >  2:592977/1‑54 (MQ=255)
                                                                                                                               aaaTGAGTCT‑GGTAAATCAACGCTGATGAAAGTGCTGTGTGGTATTTATCCCCa                                                                                   <  1:592977/54‑1 (MQ=255)
                                                                                                                                aaTGAGTCT‑GGTTAATCAACGCTGATGAAAGTGCTGTGTGGTATTTATCCCCATGGCTCCTACGAAGGCGAAATTATTTTTGCGGGAGAAGAGATTCAGGCGAGTcac                            >  2:376599/1‑108 (MQ=255)
                                                                                                                                aaTGAGTCT‑GGTTAATCAACGCTGATGAAAGTGCTGTGTGGTATTTATCCCCATGGCTCCTACGAAGGCGAAATTATTTTTGCGGGAGAAGAGATTCAGGCGAGTcac                            <  1:376599/108‑1 (MQ=255)
                                                                                                                                 aTGAGTCT‑GGTAAATCAACGCTGATGAAAGTGCTGTGTGGTATTTATCCCCATGGCTCCTACGAAGGCGAAATTATTTTTGCGGGAGAAGAGAtt                                        <  2:591983/95‑1 (MQ=255)
                                                                                                                                 aTGAGTCT‑GGTAAATCAACGCTGATGAAAGTGCTGTGTGGTATTTATCCCCATGGCTCCTACGAAGGCGAAATTATTTTTGCGGGAGAAGAGAtt                                        >  1:591983/1‑95 (MQ=255)
                                                                                                                                    |                                                                                                                                  
TAGGTGGAGTCGTTATGCCTTATCTACTTGAAATGAAGAACATTACCAAAACCTTCGGCAGTGTGAAGGCGATTGATAACGTCTGCTTGCGGTTGAATGCTGGCGAAATCGTCTCACTTTGTGGGGAAAATGGGTCT‑GGTAAATCAACGCTGATGAAAGTGCTGTGTGGTATTTATCCCCATGGCTCCTACGAAGGCGAAATTATTTTTGCGGGAGAAGAGATTCAGGCGAGTCACATCCGCGATACCGAACGCAAAGGTAT  >  NC_000913/3732187‑3732448

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A