Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F368 I0 R1
|
1472 |
214.4 |
7116750 |
95.9% |
6824963 |
147.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
CP009273 |
3,049,740 |
C→A |
100% |
L47L (CTC→CTA) |
fau → |
5‑formyltetrahydrofolate cyclo‑ligase family protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | CP009273 | 3,049,740 | 0 | C | A | 96.5%
| 476.6
/ 6.9
| 170 | L47L (CTC→CTA) | fau | 5‑formyltetrahydrofolate cyclo‑ligase family protein |
| Reads supporting (aligned to +/- strand): ref base C (4/3); new base A (77/86); total (81/89) |
| Fisher's exact test for biased strand distribution p-value = 7.10e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
| Rejected as polymorphism: Frequency below/above cutoff threshold. |
Only 100 of 170 total aligned reads displayed.
CAAAATGATTCGGCAACGTCGTCGTGCGTTAACGCCGGAACAACAGCAGGAAATGGGTCAACAAGCCGCTACCCGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCTGTATTCCTCTCTTTTG‑ATGGCGAACTCGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGTTTTGCATCCCTTTAGTGCCGGTAATTTGCTGTTCCTGAATTACCATCCGCAAAGCGAACTGGTGATGAACAGGTTGAAGATCCA > CP009273/3049596‑3049883
|
cAAAATGATTCGGCAACGTCGTCGTGCGTTAACGCCGGAACAACAGCAGGAAATGGGTCAACAAGCCGCTACCCGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCTGTATTCCTCTCTTTTG‑ATGGCGAACTAGac < 1:558951/148‑1 (MQ=255)
aaaaTGATTCGGCAACGTCGTCGTGCGTTAACGCCGGAACAACAGCAGGAAATGGGTCAACAAGCCGCTACCCGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCTGTATTCCTCTCTTTTG‑ATGGCGAACTAGaca < 1:687394/148‑1 (MQ=255)
aaaTGATTCGGCAACGTCGTCGTGCGTTAACGCCGGAACAACAGCAGGAAATGGGTCAACAAGCCGCTACCCGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCTGTATTGCGCTCTTTTG‑ATGGCGAACGAGacac > 1:2453881/1‑148 (MQ=255)
aaaTGATTCGGCAACGTCGTCGTGCGTTAACGCCGGAACAACAGCAGGAAATGGGTCAACAAGCCGCTACCCGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCTGTATTCCTCTCTTTTG‑ATGGCGAACTAGacac < 2:2670484/148‑1 (MQ=255)
aaTGATTCGGCAACGTCGTCGTGCGTTAACGCCGGAACAACAGCAGGAAATGGGTCAACAAGCCGCTACCCGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCTGTATTCCTCTCTTTTG‑ATGGCGAACTAGACAcc < 1:488589/148‑1 (MQ=255)
aaTGATTCGGCAACGTCGTCGTGCGTTAACGCCGGAACAACAGCAGGAAATGGGTCAACAAGCCGCTACCCGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCTGTATTCCTCTCTTTTG‑ATGGCGAACTAGACAcc < 1:482706/148‑1 (MQ=255)
aaTGATTCGGCAACGTCGTCGTGCGTTAACGCCGGAACAACAGCAGGAAATGGGTCAACAAGCCGCTACCCGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCTGTATTCCTCTCTTTTG‑ATGGCGAACTAGACAcc < 1:2206523/148‑1 (MQ=255)
aaTGATTCGGCAACGTCGTCGTGCGTTAACGCCGGAACAACAGCAGGAAATGGGTCAACAAGCCGCTACCCGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCGGTATTCCTCTCGTTTG‑ATGGCGAACTAGACAcc > 1:3234202/1‑148 (MQ=255)
gCAACGTCGTCGTGCGTTAACGCCGGAACAACAGCAGGAAATGGGTCAACAAGCCGCTACCCGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCTGTATTCCTCTCTTTTG‑ATGGCGAACTAGACACCCAGCCACTc < 1:1856453/148‑1 (MQ=255)
cAACGTCGTCGTGCGTTAACGCCGGAACAACAGCAGGAAATGGGTCAACAAGCCGCTACCCGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCGGGATTGCGCTCTTTTG‑TTGGCGACCTAGACAACCACCcacaca > 1:2395873/1‑148 (MQ=255)
aaCGTCGTCGTGCGTTAACGCCGGAACAACAGCAGGAAATGGGTCAACAAGCCGCTACCCGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCTGTATTCCTCTCTTTTG‑ATGGCGAACTAGACACCCAGCCACTCAt < 2:218765/148‑1 (MQ=255)
aaCGTCGTCGTGCGTTAACGCCGGAACAACAGCAGGAAATGGGTCAACAAGCCGCTACCCGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCTGTATTCCTCTCTTTTG‑ATGGCGAACTAGACACCCAGCCACTCAt < 2:1277587/148‑1 (MQ=255)
aCGTCGTCGTGCGTTAACGCCGGAACAACAGCAGGAAATGGGTCAACAAGCCGCTACCCGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCTGTGTTCCGCTCTTTTG‑TTGGCGACCTAGACACCCAGCCCCACATa > 1:399737/1‑148 (MQ=255)
aCGTCGTCGTGCGTTAACGCCGGAACAACAGCAGGAAATGGGTCAACAAGCCGCTACCCGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCTGTAGTCCTCTCTTTTG‑ATGGCGAACTAGACACCCAGCCACTCATa > 2:2768226/1‑148 (MQ=255)
aCGTCGTCGTGCGTTAACGCCGGAACAACAGCAGGAAATGGGTCAACAAGCCGCTACCCGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCGGGATTTCTCTCTTTTT‑TTTGCGAACTAGACACCCCCCcacacaaa > 1:399695/1‑146 (MQ=255)
cgtcgtcgtGCGTTAACGCCGGAACAACAGCAGGAAATGGGTCAACAAGCCGCTACCCGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCTGTATTCCTCTCTTTTG‑ATGGCGAACTAGACACCCAGCCACTCATAg > 2:3033016/1‑148 (MQ=255)
gtcgtcgtGCGTTAACGCCGGAACAACAGCAGGAAATGGGTCAACAAGCCGCTACCCGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCTGTATTCCTCTCTTTTG‑ATGGCGAACTAGACACCCAGCCACTCATAGa < 1:954629/148‑1 (MQ=255)
gtcgtcgtGCGTTAACGCCGGAACAACAGCAGAAAATGGGTCAACAAGCCGCTACCCGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCTGTATTCCTCTCTTTTG‑ATGGCGAACTCGACACCCAGCCACTCATAGa < 2:2713725/148‑1 (MQ=255)
cgtcgtGCGTTAACGCCGGAACAACAGCAGGAAATGGGTCAACAAGCCGCTACCCGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCTGTATTGCTCTCTTTTG‑ATGGCGAACTAGACACCCAGCCACACATAGaac > 2:1699084/1‑148 (MQ=255)
gtGCGTTAACGCCGGAACAACAGCAGGAAATGGGTCAACAAGCCGCTACCCGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCTGTATTCCTCTCTTTTG‑ATGGCGAACTAGACACCCAGCCACTCATAGAACAAct < 1:1986798/148‑1 (MQ=255)
gtGCGTTAACGCCGGAACAACAGCAGGAAATGGGTCAACAAGCCGCTACCCGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCTGTATTCCTCTCTTTTG‑ATGGCGAACTAGACACCCAGCCACTCATAGAACAAct < 2:1004758/148‑1 (MQ=255)
tGCGTTAACGCCGGAACAACAGCAGGAAATGGGTCAACAAGCCGCTACCCGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCTGTATTCCTCTCTTTTG‑ATGGCGAACTAGACACCCAGCCACTCATAGAACAActc > 2:1175546/1‑148 (MQ=255)
cGTTAACGCCGGAACAACAGCAGGAAATGGGTCAACAAGCCGCTACCCGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCTGTATTCCTCTCTTTTG‑ATGGCGAACTAGACACCCAGCCACTCATAGAACAACTCTg > 2:2949948/1‑148 (MQ=255)
cGTTAACGCCGGAACAACAGCAGGAAATGGGTCAACAAGCCGCTACCCGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCTGGATTCCGCTCTTTTG‑TTGGCGAACTAGACACCCAGCCACTCAGAGAACAACTCTg > 2:1178646/1‑148 (MQ=255)
tAACGCCGGAACAACAGCAGGAAATGGGTCAACAAGCCGCTACCCGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCGGGAGTGCTCGCTTTTG‑TTGGGGTACTAGACACCCCCCCACACAAAGAACAAAACTGgcg > 1:3004308/1‑148 (MQ=255)
aCGCCGGAACAACAGCAGAAAATGGGTCAACAAGCCGCTACCCGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCTGTATTCCTCTCTTTTG‑ATGGCGAACTCGACACCCAGCCACTCATAGAACAACTCTGgcgcg > 2:2588289/1‑148 (MQ=255)
cGCCGGAACAACAGCAGGAAATGGGTCAACAAGCCGCTACCCGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCTGTATTCCTCTCTTTTG‑ATGGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGgcgcgc < 2:1484238/148‑1 (MQ=255)
cGCCGGAACAACAGCAGGAAATGGGTCAACAAGCCGCTACCCGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCTGTATTCCTCTCTTTTG‑ATGGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGgcgcgc < 2:3250655/148‑1 (MQ=255)
cGGAACAACAGCAGGAAATGGGTCAACAAGCCGCTACCCGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCTGTATTCCTCTCTTTTG‑ATGGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCgg < 1:3082541/148‑1 (MQ=255)
gAACAACAGCAGGAAATGGGTCAACAAGCCGCTACCCGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCTGTATTCCTCTCTTTTG‑ATGGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTa < 1:2605186/148‑1 (MQ=255)
caacaGCAGGAAATGGGTCAACAAGCCGCTACCCGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCTGTATTCCTCTCTTTTG‑ATGGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAgc > 2:3358858/1‑148 (MQ=255)
caacaGCAGGAAATGGGTAAACAAGCCGCTACCCGGATTATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCTGTTTTCCTCTCTTTTG‑ATGGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAgc < 1:325806/148‑1 (MQ=255)
aacaGCAGGAAATGGGTCAACAAGCCGCTACCCGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCGGTATTGCTCTCTTTTT‑TTTGCGAACTAGTCACCCCGCCACACAAAGAAAAACAATGGCGCGCCGGGAAgcg > 1:2718072/1‑148 (MQ=255)
cagcagGAAATGGGTCAACAAGCCGCTACCCGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCTGTAATCCTCACTTTTG‑AAGGCCAAATAGAAACCCAACCACACAAATAACAACTCTGGCGCGCCCGTAAGcgcg > 1:3549806/1‑148 (MQ=255)
cagGAAATGGGTCAACAAGCCGCTACCCGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCTGTATTCCTCTCTTTTG‑ATGGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGtat < 1:2889059/148‑1 (MQ=255)
ggAAATGGGTCAACAAGCCGCTACCCGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCTGTATTCCTCTCTTTTG‑ATGGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTatat > 2:2320984/1‑148 (MQ=255)
gAAATGGGTCAACAAGCCGCTACCCGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCTGTATTACTCTCTTTTT‑ATGGCGAACTAGAAACCCAGCCACACATAGAACAACACTGGCGCGCCGGTAAGCGCGGatata > 1:1389046/1‑147 (MQ=255)
aTGGGTCAACAAGCCGCTACCCGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCTGTATTCCTCTCTTTTG‑ATGGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTc < 2:479303/148‑1 (MQ=255)
aTGGGTCAACAAGCCGCTACCCGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCTGTATTCCTCTCTTTTG‑ATGGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTc < 2:481148/148‑1 (MQ=255)
tGGGTCATCCAGCCGCTACCCGGATGATGAGTTATCCCCGGGTGGTGTTGGCACATAGGTTCGTTGTTTTCATCTCTTTTG‑TTGGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTcc < 1:3340394/148‑1 (MQ=255)
tGGGTCAACAATCCGCTACCCGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCGGTATTCCTCTAGTGTGAATTGGCAAAAC‑ACACCCAGCACCACATATAAAAACTCATGGGGGCCCGTAAGCCCGTATATATTca > 1:2570457/1‑147 (MQ=255)
gTCAACAAGCCGCTACCCGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCTGTTTTCCTATCTTTTG‑TTTGCGAACTAGACACCCCGCCACTCATAGAACAACACTGGCGCGCCGGTCAGCGCGGATAAATTCCAGt > 2:312771/1‑148 (MQ=255)
gTCAACAAGCCGCTACCCGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCTGTATTCCTCTCTTTTG‑ATGGCGAACAATACACCCAGCCACTCATAGAACAACACTGGCGCGCCGGGAAGCGCGGATATCTTACAgg > 2:312709/1‑147 (MQ=255)
caacaaGCCGCTACCCGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCTGTATTGCACTCTTTTG‑ATTGCGAACTAGACACCCAGCCCCTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTAAATCGTCCAGttt > 2:755670/1‑148 (MQ=255)
aacaaGCCGCTACCCGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCGGTATTCCGCTCTTTTG‑ATGGCGGACTAGACACCCAGCCCCGCATCGAACAACTCGGGCGCGCCGGTAAGCGCGTATATCTTCCAGgttt > 2:1667245/1‑148 (MQ=255)
aacaaGCCGCTACCCGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCGGTATTCCGCTCGTTTG‑ATGGGGGACTAGACACCCCCCCACACAAAGAACAACACAGGCGCGCCGGTAAGCGCGGATATCTTCCAGtttt > 1:2799344/1‑148 (MQ=255)
acaaGCCGCTACCCGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCTGTATTCCTCTCTTTTG‑ATGGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGTTTTg < 1:3131230/148‑1 (MQ=255)
aGCCGCTACCCGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCTGTATTCCTCTCTTTTG‑ATGGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGTTTTGCAt < 1:1737096/148‑1 (MQ=255)
aGCCGCTACCCGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCTGTATTCCTCTCTTTTG‑ATGGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGTTTTGCAt < 1:442388/148‑1 (MQ=255)
gCCGCTACCCGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCTGTATTCCTCTCTTTTG‑ATGGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGTTTTGCATc < 2:2595484/148‑1 (MQ=255)
gCCGCTACCCGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCTGTATTCCTCTCTTTTG‑ATGGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGTTTTGCATc < 2:3251969/148‑1 (MQ=255)
aCCCGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCTGTATTCCTCTCTTTTG‑ATGGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGTTTTGCATCCCTTTa < 2:886853/148‑1 (MQ=255)
atgatgACTTATCCCCCGGTGGTGATGGCACATACGGTCGCGGTATTGCTCGCTTTTG‑TTGGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGGGGCGCCGGGAAGCGCGGATTTCTTCCAGGTTTGCATCCCTTTTGTGCCg > 1:2793900/1‑148 (MQ=255)
tgatgaCTTATCCCCCGGTGGTGATGGCACATACGGTCGCTGTATTCCTCTCTTTTG‑ATGGCGAACTAGACACCCAGCCACTCATAGAACAACGCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGGTTTGCATCCCTTTAGTGCCgg > 2:1677694/1‑148 (MQ=255)
gatgaCTTATCCCCCGGTGGTGATGGCACATACGGTCGCTGTTTTACTCTCTTTTT‑ATTGCGAAAAAGAAACCCCCCCCCTCATATAACAACACTTGCGCGCCGGGAAGCGCGGATATATTACAGTTTTGCATCACGTTAGTGGCGGt > 2:1522031/1‑148 (MQ=255)
gatgaCTTATCCCCCGGTGGTGATGGCACATACGGTCGCGGTTTTGCTCTCTTTTG‑ATGGCGAACTAGACACCCAGCCACTCATAGAAAAACTCTGGCGCGCCGGTAAGCGCGGATATCTTACAGTTTTGCATCCCTTTAGTGGCGGt > 2:1522147/1‑148 (MQ=255)
atgaATTATCCCCCGGTGGTGATGGCACATACGGTCGCTGTATTCCTCTCTTTTG‑ATGGAGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGTTTTGCATCCCTTTAGTGCCGGTa < 1:2994822/148‑1 (MQ=255)
tgaCTTATCCCCCGGTGGTGATGGCACATACGGTCGCTGTATTCCTCTCTTTTG‑ATGGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGTTTTGCATCCCTTTAGTGCCGGTaa < 1:1541893/148‑1 (MQ=255)
gaCTTATCCCCCGGTGGTGATGGCACATACGGTCGCTGTATTCCTCTCTTTTG‑ATGGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGTTTTGCATCCCTTTAGTGCCGGTAAt < 2:2970414/148‑1 (MQ=255)
ttATCCCCCGGTGGTGATGGCACATACGGTCGCTGTATTCCTCTCTTTTG‑ATGGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGTTTTGCATCCCTTTAGTGCCGGTAATTTg < 2:1941171/148‑1 (MQ=255)
aTCCCCCGGTGGTGATGGCACATACGGTCGCTGTATTCCTCTCTTTTG‑ATGGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGTTTTGCATCCCTTTAGTGCCGGTAATTTGCt > 2:2940644/1‑148 (MQ=255)
tCCCCCGGTGGTGATGGCACATACGGTCGCTGTATTCCTCTCTTTTG‑ATGGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGTTTTGCATCCCTTTAGTGCCGGTAATTTGCTg < 2:2532367/148‑1 (MQ=255)
ccccGGTGGTGATGGCACATACGGTCGCTGTATTCCTCTCTTTTG‑ATGGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGTTTTGCATCCCGTTAGTGCCGGTAATTTGCTGtt > 2:547989/1‑148 (MQ=255)
ccccGGTGGTGATGGCACATACGGTCGCTGTAGTCCTCTCTTTTG‑ATGGCGAACGAGACACCCAGCCACTCATAGAACAACACTGGCGCGCCGGTAAGCGCGTATATCTTCCAGTTTTGCATCCCTTTAGTGCCGGTAATTTGCTGtt < 2:2363455/148‑1 (MQ=255)
ggtggtGATGGCACATACGGTCGCTGTATTCCTCTCTTTTG‑ATGGCGAACTCGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGTTTTGCATCCCTTTAGTGCCGGTAATTTGCTGTTCCTg < 2:1212077/148‑1 (MQ=255)
tggtgATGGCACATACGGTCGCTGTATTCCTCTCTTTTG‑TTGGCGAACTAGACACCCAGCCACTCCTAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGTTTTTCAACCCTTTAGTGCCGGTACTTTGCTGTTCCTGaa > 2:801511/1‑148 (MQ=255)
tggtgATGGCACATACGGTCGCTGTATTCCTCTCTTTTG‑ATGGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGTTTTGCATCCCTTTAGTGCCGGTAATTTGCTGTTCCTGaa < 1:1070154/148‑1 (MQ=255)
tggtgATGGCACATACGGTCGCTGTATTCCTCTCTTTTG‑ATGGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGTTTTGCATCCCTTTAGTGCCGGTAATTTGCTGTTCCTGaa < 1:1070089/148‑1 (MQ=255)
ggtgATGGCACATACGGTCGCTGTTTTGCTCTCTATTG‑TTGGCGAACTAGACACCCACCCCCACAAACAACAACAGTGGCGCGCCGGGAAGCGCGGATATCTTACAGTTTTGCATCCCTTTAGTGCCGGGAATTTGCTGTTACTGAAt > 2:3327441/1‑148 (MQ=255)
tgATGGCACATACGGTCGCTGTATTCCTGTCGTTTT‑ATGGCGAACAAGACACCCAGCCACGCATAGAACAACTCAGGCGCGCCGGTAAGCGCGTATATATTACAGTTTTTCATCCCGTTAGTGCCGGGAATTTGCTGTTACGGAATTa > 2:3388461/1‑148 (MQ=255)
tgATGGCACATACGGTCGCTGTATTCCTCTCTTTTG‑ATGGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGTTTTGCATCCCTTTAGTGCCGGTAATTTGCTGTTCCTGAATTa < 1:1182231/148‑1 (MQ=255)
aTGGCACATACGGTCGCTGTATTCCTCTCTTTTG‑ATGGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGTTTTGCATCCCTTTAGTGCCGGTAATTTGCTGTTCCTGAATTAcc < 2:156596/148‑1 (MQ=255)
tGGCACATACGGTCGCTGTATTGCTCTGTTTTG‑TTGGCGAACTAGACACCCACCCACTCATATAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGTTTTGCATCCCATTAGTGCCGGTCATTTGCTGTTCCTGAATTAccc > 2:2520894/1‑147 (MQ=255)
tGGCACATACGGTCGCTGTATTCCTCTCTTTTG‑ATGGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGTTTTGCATCCCTTTAGTGCCGGTAATTTGCTGTTCCTGAATTACCa < 1:1150552/148‑1 (MQ=255)
ggCACATACGGTCGCTGTATTCCTCTCTTTTG‑ATGGCGAACTCGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGTTTTGCATCCCTTTAGTGCCGGTAATTTGCTGTTCCTGAATTACCAt < 2:3519959/148‑1 (MQ=255)
ggCACATACGGTCGCTGTATTCCTCTCTTTTG‑ATGGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGTTTTGCATCCCTTTAGTGCCGGTAATTTGCTGTTCCTGAATTACCAt < 2:181634/148‑1 (MQ=255)
gCACATACGGTCGCTGTATTGCTCTCTTTTT‑ATGGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGGATATCTTCCAGTTTTGCATCCCTTTAGTGCCGGTTATTTGCTGTTCCTGAATTAACATc > 2:3090982/1‑148 (MQ=255)
cGGTCGCTGTTTTACTCTCTTTTT‑ATGGCGAACAAGAAACCCAGCCACACAAATAAAAAAAATGGCGCGCCGGTAAGCGCGTATATCTTACAGTTTTTCATCCCTTTATTTGCGGTTATTTGATGTTACTGAATTAAAAAACGCAAAg > 2:2142749/1‑148 (MQ=255)
cGGTCGCTGTATTCCTCTCTTTTG‑ATTGCGAACAATACAACCAGCCACACATAAAACAAAACAGGCGCGCCGGTAAGCGCGTATATCTTCCAGTTTTGCAACCCTTTAGTTCCGGTAATTTTCTGTTCCTGAAATACCAAACCCAAAg > 2:2142785/1‑148 (MQ=255)
cGGTCGCTGTATTCCTCTCTTTTG‑ATGGCGAACAATACACCCAGCCACTCATAGAACAAAACTGGCGCGCCGGTAAGCGCGTATATATTCCAGTTTTTCATCCCTTTAGTGCCGGTAATTTTCTGTTACTGAATTAACATCCGCAAAg > 2:214780/1‑148 (MQ=255)
cTGTATTCCTCTCTTTTG‑ATGGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGTTTTGCATCCCTTTAGTGCCGGTAATTTGCTGTTCCTGAATTACCATCCGCAAAGCGAACt > 2:1461736/1‑148 (MQ=255)
cTGTATTCCTCTCTTTTG‑ATGGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGTTTTGCATCCCTTTAGTGCCGGTAATTTGCTGTTCCTGAATTACCATCCGCAAAGCGAACt < 2:1271846/148‑1 (MQ=255)
cTGTATTCCTCTCTTTTG‑ATGGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGTTTTGCATCCCTTTAGTGCCGGTAATTTGCTGTTCCTGAATTACCATCCGCAAAGCGAACt > 2:1044238/1‑148 (MQ=255)
gTATTCCTCTCTTTTG‑ATGGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGTTTTGCATCCCTTTAGTGCCGGTAATTTGCTGTTCCTGAATTACCATCCGCAAAGCGAACTgg < 2:653630/148‑1 (MQ=255)
gTATTCCTCTCTTTTG‑ATGGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGTTTTGCATCCCTTTAGTGCCGGTAATTTGCTGTTCCTGAATTACCATCCGCAAAGCGAACTgg < 1:1607076/148‑1 (MQ=255)
gTATTCCTCTCTTTTG‑ATGGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGTTTTGCATCCCTTTAGTGCCGGTAATTTGCTGTTCCTGAATTACCATCCGCAAAGCGAACTgg < 1:1607131/148‑1 (MQ=255)
tATTCCTCTCTTTTG‑ATGGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGTTTTGCATCCCTTTAGTGCCGGTAATTTGCTGTTCCTGAATTACCATCCGCAAAGCGAACTGGt < 2:742850/148‑1 (MQ=255)
tCCTCTCTTTTG‑ATGGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGTTTTGCATCCCTTTAGTGCCGGTAATTTGCTGTTCCTGAATTACCATCCGCAAAGCGAACTGGtgat < 1:862713/148‑1 (MQ=255)
tCCTCTCTTTTG‑ATGGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGTTTTGCATCCCTTTAGTGCCGGTAATTTGCTGTTCCTGAATTACCATCCGCAAAGCGAACTGGtgat > 1:732962/1‑148 (MQ=255)
ctctctTTTG‑ATGGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGTTTTGCATCCCTTTAGTGCCGGTAATTTGCTGTTCCTGAATTACCATCCGCAAAGCGAACTGGtgatga < 2:3234202/148‑1 (MQ=255)
ctctctTTTG‑ATGGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGTTTTGCATCCCTTTAGTGCCGGTAATTTGCTGTTCCTGAATTACCATCCGCAAAGCGAACTGGtgatga > 2:1993243/1‑148 (MQ=255)
tctctTTTG‑ATGGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGTTTTGCATCCCTTTAGTGCCGGTAATTTGCTGTTCCTGAATTACCATCCGCAAAGCGAACTGGTGATGaa < 2:3410938/148‑1 (MQ=255)
tctctTTTG‑ATGGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGTTTTGCATCCCTTTAGTGCCGGTAATTTGCTGTTCCTGAATTACCATCCGCAAAGCGAACTGGTGATGaa < 2:1756586/148‑1 (MQ=255)
atctTTTG‑ATGGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGTTTTGCATCCCTTTAGTGCCGGTAATTTGCTGTTCCTGAATTACCATCCGCAAAGCGAACTGGTGATGAAc < 1:653399/147‑1 (MQ=255)
tctTTTG‑ATGGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGTTTTGCATCCCTTTAGTGCCGGTAATTTGCTGTTCCTGAATTACCATCCGCAAAGCGAACTGGTGATGAACa < 2:3484304/148‑1 (MQ=255)
ctTTTG‑ATGGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGTTTTGCATCCCTTTAGTGCCGGTAATTTGCTGTTCCTGAATTACCATCCGCAAAGCGAACTGGTGATGAACAg < 1:2475130/148‑1 (MQ=255)
cGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGTTTTGCATCCCTTTAGTGCCGGTAATTTGCTGTTCCTGAATTACCATCCGCAAAGCGAACTGGTGATGAACAGGTTGAAGATc > 2:2834893/1‑148 (MQ=255)
cGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGTTTTGCATCCCTTTAGTGCCGGTAATTTGCTGTTCCTGAATTACCATCCGCAAAGCGAACTGGTGATGAACAGGTTGAAGATc > 2:2540983/1‑148 (MQ=255)
cGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGTTTTGCATCCCTTTAGTGCCGGTAATTTGCTGTTCCTGAATTACCATCCGCAAAGCGAACTGGTGATGAACAGATTGAAGATc < 2:3282400/148‑1 (MQ=255)
aaCTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGTTTTGCATCCCTTTAGTGCCGGTAATTTGCTGTTCCTGAATTACCATCCGCAAAGCGAACTGGTGATGAACAGGTTGAAGATCCa > 1:2918670/1‑148 (MQ=255)
|
CAAAATGATTCGGCAACGTCGTCGTGCGTTAACGCCGGAACAACAGCAGGAAATGGGTCAACAAGCCGCTACCCGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCTGTATTCCTCTCTTTTG‑ATGGCGAACTCGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGTTTTGCATCCCTTTAGTGCCGGTAATTTGCTGTTCCTGAATTACCATCCGCAAAGCGAACTGGTGATGAACAGGTTGAAGATCCA > CP009273/3049596‑3049883
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CAAAATGATTCGGCAACGTCGTCGTGCGTTAACGCCGGAACAACAGCAGGAAATGGGTCAACAAGCCGCTACCCGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCTGTATTCCTCTCTTTTGATGGCGAACTCGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGTTTTGCATCCCTTTAGTGCCGGTAATTTGCTGTTCCTGAATTACCATCCGCAAAGCGAACTGGTGATGAACAGGTTGAAGATCCATGAGCC > CP009273/3049596‑3049889
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CAAAATGATTCGGCAACGTCGTCGTGCGTTAACGCCGGAACAACAGCAGGAAATGGGTCAACAAGCCGCTACCCGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCTGTATTGCGCTCTTTTGATGGCGAACGAGACAC > SRR19973067.2470010/1‑150 (MQ=60)
CAAAATGATTCGGCAACGTCGTCGTGCGTTAACGCCGGAACAACAGCAGGAAATGGGTCAACAAGCCGCTACCCGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCTGTATTCCTCTCTTTTGATGGCGAACTAGACAC < SRR19973067.562609/150‑1 (MQ=60)
CAAAATGATTCGGCAACGTCGTCGTGCGTTAACGCCGGAACAACAGCAGGAAATGGGTCAACAAGCCGCTACCCGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCTGTATTCCTCTCTTTTGATGGCGAACTAGACAC < SRR19973067.562747/150‑1 (MQ=60)
AAAATGATTCGGCAACGTCGTCGTGCGTTAACGCCGGAACAACAGCAGGAAATGGGTCAACAAGCCGCTACCCGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCTGTATTCCTCTCTTTTGATGGCGAACTAGACACC < SRR19973067.692124/150‑1 (MQ=60)
AAAATGATTCGGCAACGTCGTCGTGCGTTAACGCCGGAACAACAGCAGGAAATGGGTCAACAAGCCGCTACCCGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCGGTATTCCTCTCGTTTGATGGCGAACTAGACACC > SRR19973067.3254493/1‑150 (MQ=60)
AATGATTCGGCAACGTCGTCGTGCGTTAACGCCGGAACAACAGCAGGAAATGGGTCAACAAGCCGCTACCCGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCTGTATTCCTCTCTTTTGATGGCGAACTAGACACCCA < SRR19973067.486027/150‑1 (MQ=60)
AATGATTCGGCAACGTCGTCGTGCGTTAACGCCGGAACAACAGCAGGAAATGGGTCAACAAGCCGCTACCCGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCTGTATTCCTCTCTTTTGATGGCGAACTAGACACCCA < SRR19973067.491945/150‑1 (MQ=60)
AATGATTCGGCAACGTCGTCGTGCGTTAACGCCGGAACAACAGCAGGAAATGGGTCAACAAGCCGCTACCCGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCTGTATTCCTCTCTTTTGATGGCGAACTAGACACCCA < SRR19973067.2221238/150‑1 (MQ=60)
GCAACGTCGTCGTGCGTTAACGCCGGAACAACAGCAGGAAATGGGTCAACAAGCCGCTACCCGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCTGTATTCCTCTCTTTTGATGGCGAACTAGACACCCAGCCACTCAT < SRR19973067.1869104/150‑1 (MQ=60)
CAACGTCGTCGTGCGTTAACGCCGGAACAACAGCAGGAAATGGGTCAACAAGCCGCTACCCGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCTGTGTTCCGCTCTTTTGTTGGCGACCTAGACACCCAGCCCCACATA > SRR19973067.402526/1‑150 (MQ=60)
ACGTCGTCGTGCGTTAACGCCGGAACAACAGCAGGAAATGGGTCAACAAGCCGCTACCCGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCTGTATTCCTCTCTTTTGATGGCGAACTAGACACCCAGCCACTCATAGA < SRR19973067.2542690/150‑1 (MQ=60)
GTCGTCGTGCGTTAACGCCGGAACAACAGCAGGAAATGGGTCAACAAGCCGCTACCCGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCTGTATTCCTCTCTTTTGATGGCGAACTAGACACCCAGCCACTCATAGAAC < SRR19973067.961166/150‑1 (MQ=60)
GTCGTGCGTTAACGCCGGAACAACAGCAGGAAATGGGTCAACAAGCCGCTACCCGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCTGTATTACTCTCTTTTGATGGCGAACTAGACACCCAGCCACTCATAGAACAAC > SRR19973067.527263/1‑150 (MQ=60)
GTGCGTTAACGCCGGAACAACAGCAGGAAATGGGTCAACAAGCCGCTACCCGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCTGTATTCCTCTCTTTTGATGGCGAACTAGACACCCAGCCACTCATAGAACAACTCT < SRR19973067.2000232/150‑1 (MQ=60)
GTGCGTTAACGCCGGAACAACAGCAGGAAATGGGTCAACAAGCCGCTACCCGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCTGTATTCCTCTCTTTTGATGGCGAACTAGACACCCAGCCACTCATAGAACAACTCT < SRR19973067.2366090/150‑1 (MQ=60)
CGGAACAACAGCAGGAAATGGGTCAACAAGCCGCTACCCGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCTGTATTGCTCTCGTTTGTTTGCGAACTAGACACCCccccccacaaataaacaaaatggcgcgccgctc > SRR19973067.484334/1‑117 (MQ=60)
CGGAACAACAGCAGGAAATGGGTCAACAAGCCGCTACCCGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCTGTATTCCTCTCTTTTGATGGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTA < SRR19973067.3102155/150‑1 (MQ=60)
GGAACAACAGCAGGAAATGGGTCAACAAGCCGCTACCCGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCGGTTTTACTCTCTTTTTTTGGGGAACTAGAAACCCAGCCACACATAGAACAACACTGGCGCGCCGGTAA > SRR19973067.1730598/1‑150 (MQ=60)
GAACAACAGCAGGAAATGGGTCAACAAGCCGCTACCCGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCTGTATTCCTCTCTTTTGATGGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAG < SRR19973067.2622117/150‑1 (MQ=60)
ACAACAGCAGGAAATGGGTCAACAAGCCGCTACCCGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCGGTATTGCTCTCTTTTTTTTGCGAACTAGTCACCCCGCCACACAAAGAAAAACAATGGCGCGCCGGGAAGCG > SRR19973067.2735591/1‑150 (MQ=60)
CAACAGCAGGAAATGGGTAAACAAGCCGCTACCCGGATTATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCTGTTTTCCTCTCTTTTGATGGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGC < SRR19973067.328029/150‑1 (MQ=60)
AACAGCAGGAAATGGGTCAACAAGCCGCTACCCGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCTGTAATCCTCACTTTTGAAGGCCAAATAGAAACCCAACCACACAAATAACAACTCTGGCGCGCCCGTAAGCGCG > SRR19973067.3572196/1‑150 (MQ=60)
CAGGAAATGGGTCAACAAGCCGCTACCCGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCTGTATTCCTCTCTTTTGATGGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATAT < SRR19973067.2907525/150‑1 (MQ=60)
AGGAAATGGGTCAACAAGCCGCTACCCGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCTGTATTACTCTCTTTTTATGGCGAACTAGAAACCCAGCCACACATAGAACAACACTGGCGCGCCGGTAAGCGCGGATATA > SRR19973067.1398488/1‑150 (MQ=60)
TGGGTCATCCAGCCGCTACCCGGATGATGAGTTATCCCCGGGTGGTGTTGGCACATAGGTTCGTTGTTTTCATCTCTTTTGTTGGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAG < SRR19973067.3361547/150‑1 (MQ=60)
TCAACAAGCCGCTACCCGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCTGTATTCCTCTCTTTTGATGGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGTTTT < SRR19973067.1901524/150‑1 (MQ=60)
TCAACAAGCCGCTACCCGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCGGTATTGCGCTCTTTTGTTGGGGAACGAGAAACCCAGCCACACATAGAAAAAAACTGGCGCGCCGGTAAGCGCGGATATATTACAGTTTT > SRR19973067.2817358/1‑150 (MQ=60)
TCAACAAGCCGCTACCCGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCGGTATTCCGCTCGTTTGATGGGGGACTAGACACCCCCCCACACAAAGAACAACACAGGCGCGCCGGTAAGCGCGGATATCTTCCAGTTTT > SRR19973067.2817402/1‑150 (MQ=60)
CAACAAGCCGCTACCCGGATGATGACTTATCCCCCGGTGGTGATTGCACATACGGTCGCTGTATTCCTCTCTTTTGATGGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGTTTTG < SRR19973067.3550945/150‑1 (MQ=60)
CAACAAGCCGCTACCCGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCGGGTTTCGGCTCTTTTTTTTGGGAACGCGACACCCCGCCACACAAAGAACCACACGGGCGCGCCGGTAAGCGCGTATATCGTCCAGTTTTG > SRR19973067.2458209/1‑150 (MQ=60)
AACAAGCCGCTACCCGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCTGTATTCCTCTCTTTTGATGGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGTTTTGC < SRR19973067.3128673/150‑1 (MQ=60)
ACAAGCCGCTACCCGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCTGTATTCCTCTCTTTTGATGGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGTTTTGCA < SRR19973067.3151125/150‑1 (MQ=60)
AGCCGCTACCCGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCTGTATTCCTCTCTTTTGATGGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGTTTTGCATCC < SRR19973067.445460/150‑1 (MQ=60)
AGCCGCTACCCGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCTGTATTCCTCTCTTTTGATGGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGTTTTGCATCC < SRR19973067.1748977/150‑1 (MQ=60)
AGCCGCTACCCGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCTGGATTCCTCTCTTTTGTTTGCGGACTAGACACCCACCCACGCAAAGAACAACAATGGCGCGCCGGGAAGCGCGGATATCTTGCAGTTTTGCATCC > SRR19973067.381874/1‑150 (MQ=60)
AGCCGCTACCCGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCGGTTTTGCGCGCTTTTGTTTGCGCACTAGACACCCACCCCCACCTAGAACAAAACAGGCGCGCCGGTAAGCGCGGATATCTTACAGTTTTTCATCC > SRR19973067.157909/1‑150 (MQ=45)
CGCTACCCGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCTTTATTCCTCTCTTTTGATGGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGTTTTGCATCCCTT < SRR19973067.1523502/150‑1 (MQ=60)
CTACCCGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCTGTATTGCTGTCTTTTTATGGGGAACTAGACACCCAcccccgcaaagaacaacacgggggcgcccgggagcgcggatatattgcagtttttcatcccgttt > SRR19973067.998006/1‑85 (MQ=60)
CTACCCGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCGGTTTTGGTCTCTTTTTTTGGGGAACTAGAAACCCCGCCACACAAAGAAAAACACTGGCGCGCCGGGCAGCGCGGCTATCTTTCAGTTTTTGATCCCTTTA > SRR19973067.997970/1‑150 (MQ=36)
CGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCGGTGTTGCTCTGTTTTTATGGGGAACGAGACACCCCCCCACACCTAATACAACACTGGCGCGCCGGGAAGCGCGGATATATTCCAGTTTTTCAAACCCTTAGTGCC > SRR19973067.2448195/1‑150 (MQ=29)
CGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCGGTATTGCGCTCTTTTGATGGCGAACTAGACACCCACCCACACATAGAACAACACAGGCGCGCCGGTAAGCGCGGATATCTTGCAGTTTTGCATCCCTTTAGTGGC > SRR19973067.2619123/1‑150 (MQ=60)
GGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCTGTATTCCTCTCTTTTGATGGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGTTTTGCATCCCTTTAGTGCCG < SRR19973067.402878/150‑1 (MQ=60)
GGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCTGTATTACTCTCTTTTGTTGGGGAACTAGACACCCACCCACACAAAGAACAACACTGGCGCGCCGGTAAGCGCGGATATATTCCAGTTTTGCATACCGTTAGTGGCG > SRR19973067.1778484/1‑150 (MQ=60)
GGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCGGTATTGCTCGCTTTTGTTGGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGGGGCGCCGGGAAGCGCGGATTTCTTCCAGGTTTGCATCCCTTTTGTGCCG > SRR19973067.2811928/1‑150 (MQ=60)
ATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCTGTATTCCTCTCTTTTGATGGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGTTTTGCATCCCTTTAGTGCCGGTAAT < SRR19973067.3011931/150‑1 (MQ=60)
ATGAATTATCCCCCGGTGGTGATGGCACATACGGTCGCTGTATTCCTCTCTTTTGATGGAGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGTTTTGCATCCCTTTAGTGCCGGTAAT < SRR19973067.3013806/150‑1 (MQ=60)
TGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCTGTATTCCTCTCTTTTGATGGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGTTTTGCATCCCTTTAGTGCCGGTAATT < SRR19973067.1552352/150‑1 (MQ=60)
GACTTATCCCCCGGTGGTGATGGCACATACGGTCGCTGTATTCCTCTCTTTTGATGGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGTTTTGCATCCCTTTAGTGCCGGTAATTT < SRR19973067.728253/150‑1 (MQ=60)
TTATCCCCCGGTGGTGATGGCACATACGGTCGCTGTATTCCTCTCTTTTGATGGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGTTTTGCATCCCTTTAGTGCCGGTAATTTGCT < SRR19973067.2740970/150‑1 (MQ=60)
TGGTGATGGCACATACGGTCGCTGTATTCCTCTCTTTTGATGGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGTTTTGCATCCCTTTAGTGCCGGTAATTTGCTGTTCCTGAATT < SRR19973067.1077490/150‑1 (MQ=60)
TGGTGATGGCACATACGGTCGCTGTATTCCTCTCTTTTGATGGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGTTTTGCATCCCTTTAGTGCCGGTAATTTGCTGTTCCTGAATT < SRR19973067.1077425/150‑1 (MQ=60)
GGTGATGGCACATACGGTCGCGGTATTGCTGTCTTTTGTTGGCGAACAAGACACCCACCCCCACAGATAAAAACACTGGCGCGCCCGGGAGCGCGGATATCATCAAGTTTTGCATCCCTGTAGTGCCGGGAATTTGATGTTGCTGAAaaa > SRR19973067.2810098/1‑147 (MQ=14)
GGTGATGGCACATACGGTCGCGGTATTGCTCTCTTTTTATTGCGAACTAGAAACCCAGCCACACATAGAACAAAACTGGCGCGCCGGTAAGCGCGGATATATTCCAGTTTTGCATCCCATTAGTTCCGGTGATTTGCTGGTGCTGAATTA > SRR19973067.3207377/1‑150 (MQ=60)
TGATGGCACATACGGTCGCTGTATTCCTCTCTTTTGATGGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGTTTTGCATCCCTTTAGTGCCGGTAATTTGCTGTTCCTGAATTACC < SRR19973067.1190031/150‑1 (MQ=60)
TGGCACATACGGTCGCTGTATTCCTCTCTTTTGATGGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGTTTTGCATCCCTTTAGTGCCGGTAATTTGCTGTTCCTGAATTACCATC < SRR19973067.1158250/150‑1 (MQ=60)
TGGCACATACGGTCGCTGTATTCCTCTCTTTTGATGGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGTTTTGCATCCCTTTAGTGCCGGTAATTTGCTGTTCCTGAATTACCATC < SRR19973067.1158208/150‑1 (MQ=60)
GTATTCCTCTCTTTTGATGGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGTTTTGCATCCCTTTAGTGCCGGTAATTTGCTGTTCCTGAATTACCATCCGCAAAGCGAACTGGTG < SRR19973067.1618165/150‑1 (MQ=60)
GTATTCCTCTCTTTTGATGGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGTTTTGCATCCCTTTAGTGCCGGTAATTTGCTGTTCCTGAATTACCATCCGCAAAGCGAACTGGTG < SRR19973067.1618109/150‑1 (MQ=60)
ATTCCTCTCTTTTGATGGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGTTTTGCATCCCTTTAGTGCCGGTAATTTGCTGTTCCTGAATTACCATCCGCAAAGCGAACTGGTGAT > SRR19973067.738053/1‑150 (MQ=60)
TCCTCTCTTTTGATGGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGTTTTGCATCCCTTTAGTGCCGGTAATTTGCTGTTCCTGAATTACCATCCGCAAAGCGAACTGGTGATGA < SRR19973067.868500/150‑1 (MQ=60)
ATCTTTTGATGGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGTTTTGCATCCCTTTAGTGCCGGTAATTTGCTGTTCCTGAATTACCATCCGCAAAGCGAACTGGTGATGAACAG < SRR19973067.657836/150‑1 (MQ=60)
CTTTTGATGGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGTTTTGCATCCCTTTAGTGCCGGTAATTTGCTGTTCCTGAATTACCATCCGCAAAGCGAACTGGTGATGAACAGGT < SRR19973067.2491402/150‑1 (MQ=60)
TTTGATGGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGTTTTGCATCCCTTTAGTGCCGGTAATTTGCTGTTCCTGAATTACCATCCGCAAAGCGAACTGGTGATGAACAGGTTG < SRR19973067.282016/150‑1 (MQ=60)
GATGGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGTTTTGCATCCCTTTAGTGCCGGTAATTTGCTGTTCCTGAATTACCATCCGCAAAGCGAACTGGTGATGAACAGGTTGAAG < SRR19973067.1183325/150‑1 (MQ=60)
CGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGTTTTGCATCCCTTTAGTGCCGGTAATTTGCTGTTCCTGAATTACCATCCGCAAAGCGAACTGGTGATGAACAGGTTGAAGATCCA > SRR19973067.2937236/1‑150 (MQ=60)
CGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGCATATCTTCCAGTTTTGCATCCCTTTAGTGCCGGTAATTTGCTGTTCCTGAATTACCATCCGCAAAGCGAACTGGTGATGAACAGGTTGAAGATCCA < SRR19973067.765946/150‑1 (MQ=60)
GATCTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGGCGGTAAGCGCGTATTTGTTCCTGTTTTGCATCCCTTTTGTGCCGGTTATTTGATGTTCGTGAATTACCATCCGCTAAGCGTTCTGGTGATGAACAGGTTGAAGATCCAT < SRR19973067.830696/150‑1 (MQ=60)
AGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGTTTTGCATCCCTTTAGTGCCGGTAATTTGCTGTTCCTGAATTACCATCCGCAAAGCGAACTGGTGATGAACAGGTTGAAGATCCATGAGCC > SRR19973067.1603320/1‑150 (MQ=60)
AGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGTTTTGCATCCCTTTAGTGCCGGTAATTTGCTGTTCCTGAATTACCATCCGCAAAGCGAACTGGTGATGAACAGGTTGAAGATCCATGAGCC > SRR19973067.950964/1‑150 (MQ=60)
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CAAAATGATTCGGCAACGTCGTCGTGCGTTAACGCCGGAACAACAGCAGGAAATGGGTCAACAAGCCGCTACCCGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCTGTATTCCTCTCTTTTGATGGCGAACTCGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGTTTTGCATCCCTTTAGTGCCGGTAATTTGCTGTTCCTGAATTACCATCCGCAAAGCGAACTGGTGATGAACAGGTTGAAGATCCATGAGCC > CP009273/3049596‑3049889
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
