Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F434 I0 R1
|
1130 |
215.9 |
7031662 |
97.1% |
6827743 |
147.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
CP009273 |
3,049,740 |
C→A |
100% |
L47L (CTC→CTA) |
fau → |
5‑formyltetrahydrofolate cyclo‑ligase family protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | CP009273 | 3,049,740 | 0 | C | A | 100.0%
| 660.6
/ ‑6.7
| 211 | L47L (CTC→CTA) | fau | 5‑formyltetrahydrofolate cyclo‑ligase family protein |
| Reads supporting (aligned to +/- strand): ref base C (0/1); new base A (93/116); total (93/118) |
| Rejected as polymorphism: E-value score below prediction cutoff. |
| Rejected as polymorphism: Frequency below/above cutoff threshold. |
| Rejected as polymorphism: Variant not supported by required number of reads on each strand. |
Only 100 of 211 total aligned reads displayed.
GCAAAATGATTCGGCAACGTCGTCGTGCGTTAACGCCGGAACAACAGCAGGAAATGGGTCAACAAGCCGCTACCCGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCTGTATTCCTCTCTTTTGATGGCGAACTCGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGTTTTGCATCCCTTTAGTGCCGGTAATTTGCTGTTCCTGAATTACCATCCGCAAAGCGAACTGGTGATGAACAGGTTGAAGATCCA > CP009273/3049595‑3049883
|
gCAAAATGATTCGGCAACGTCGTCGTGCGTTAACGCCGGAACAACAGCAGGAAATGGGTCAACAAGCCGCTACCCGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCGGTATTCCTCTCTTTTGATGGCGAACTAGa > 1:1998239/1‑148 (MQ=255)
cAAAATGATTCGGCAACGTCGTCGTGCGTTAACGCCGGAACAACAGCAGGAAATGGGTCAACAAGCCGCTACCCGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCTGTATTCCTCTCTTTTGATGGCGAACTAGac < 2:854758/148‑1 (MQ=255)
aaaaTGATTCGGCAACGTCGTCGTGCGTTAACGCCGGAACAACAGCAGGAAATGGGTCAACAAGCCGCTACCCGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCTGTATTCCTCTCTTTTGATGGCGAACTAGaca < 2:2068301/148‑1 (MQ=255)
aaaTGATTCGGCAACGTCGTCGTGCGTTAACGCCGGAACAACAGCAGGAAATGGGTCAACAAGCCGCTACCCGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCGGTATTGCTCTCTTTTGTTTGCGAACTAGacac > 1:661622/1‑148 (MQ=255)
aaTGATTCGGCAACGTCGTCGTGCGTTAACGCCGGAACAACAGCAGGAAATGGGTCAACAAGCCGCTACCCGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCTGTATTCCTCTCTTTTGATGGCGAACTAGACAcc < 2:2845979/148‑1 (MQ=255)
aaTGATTCGGCAACGTCGTCGTGCGTTAACGCCGGAACAACAGCAGGAAATGGGTCAACAAGCCGCTACCCGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCTGTATTCCTCTCTTTTGATGGCGAACTAGACAcc < 2:1178111/148‑1 (MQ=255)
aaTGATTCGGCAACGTCGTCGTGCGTTAACGCCGGAACAACAGCAGGAAATGGGTCAACAAGCCGCTACCCGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCTGTATTCCTCTCTTTTGATGGCGAACTAGACAcc < 2:1901235/148‑1 (MQ=255)
aaTGATTCGGCAACGTCGTCGTGCGTTAACGCCGGAACAACAGCAGGAAATGGGTCAACAAGCCGCTACCCGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCGGTATTGCTCTCTTTTGATGGCGAACTAGACAcc > 1:1863669/1‑148 (MQ=255)
aTGATTCGGCAACGTCGTCGTGCGTTAACGCCGGAACAACAGCAGGAAATGGGTCAACAAGCCGCTACCCGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCTGTATTCCTCTCTTTTGATGGCGCACTAGACAccc > 2:1053653/1‑148 (MQ=255)
aTGATTCGGCAACGTCGTCGTGCGTTAACGCCGGAACAACAGCAGGAAATGGGTCAACAAGCCGCTACCCGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCTGTATTCAGGGCTTTTGATGGCGCACGAGAGAccc > 1:405380/1‑148 (MQ=255)
aTTCGGCAACGTCGTCGTGCGTTAACGCCGGAACAACAGCAGGAAATGGGTCAACAAGCCGCTACCCGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCTGTATTCCTCTCTTTTGATGGCGAACTAGACACCCAGc < 2:2611068/148‑1 (MQ=255)
aTTCGGCAACGTCGTCGTGCGTTAACGCCGGAACAACAGCAGGAAATGGGTCAACAAGCCGCTACCCGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCGGGATTGCGCGCTTTTGTTGGGGTACTAGACACCCCGc > 1:1507416/1‑148 (MQ=255)
ttCGGCAACGTCGTCGTGCGTTAACGCCGGAACAACAGCAGGAAATGGGTCAACAAGCCGCTACCCGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCTGTATTCCTCTCTTTTGATGGCGAACTAGACACCCAGcc > 2:2249212/1‑148 (MQ=255)
ttCGGCAACGTCGTCGTGCGTTAACGCCGGAACAACAGCAGGAAATGGGTCAACAAGCCGCTACCCGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCTGGATTCCTCTCTTTTGATTGCGAACTAGACACCCAGcc > 2:3307770/1‑148 (MQ=255)
tCGGCAACGTCGTCGTGCGTTAACGCCGGAACAACAGCAGGAAATGGGTCAACAAGCCGCTACCCGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCGGTATTACTCTCGTTTGATGGCGACCTAGACAcccaccca > 1:151456/1‑148 (MQ=255)
tCGGCAACGTCGTCGTGCGTTAACGCCGGAACAACAGCAGGAAATGGGTCAACAAGCCGCTACCCGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCGGGTTTACACTCTTTTGTTTGCGCACAAGACAcccccccc > 1:1554754/1‑143 (MQ=255)
ggCAACGTCGTCGTGCGTTAACGCCGGAACAACAGCAGGAAATGGGTCAACAAGCCGCTACCCGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCTGTATTCCTCTCTTTTGATGGCGAACTAGACACCCAGCCACt < 1:2021598/148‑1 (MQ=255)
cgtcgtcgtGCGTTAACGCCGGAACAACAGCAGGAAATGGGTCAACAAGCCGCTACCCGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCTGTATTCCTCTCTTTTGATGGCGAACTAGACACCCAGCCACTCATAg > 2:136776/1‑148 (MQ=255)
tcgtcgtGCGTTAACGCCGGAACAACAGCAGGAAATGGGTCAACAAGCCGCTACCCGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCTGTATTCCTCTCTTTTGATGGCGAACTAGACACCCAGCCACTCATAGaa < 1:2232930/148‑1 (MQ=255)
cgtcgtGCGTTAACGCCGGAACAACAGCAGGAAATGGGTCAACAAGCCGCTACCCGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCGGTATTACTGTCTTTTTTTTGGGAACTAGACAACCACCCACACATAGaac > 1:2741252/1‑148 (MQ=255)
tcgtGCGTTAACGCCGGAACAACAGCAGGAAATGGGTCAACAAGCCGCTACCCGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCTGTATTCCTCTCTTTTGATGGCGAACTAGACACCCAGCCACTCATAGaacaa < 2:1736930/148‑1 (MQ=255)
tcgtGCGTTAACGCCGGAACAACAGCAGGAAATGGGTCAACAAGCCGCTACCCGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCTGTATTCCTCTCTTTTGATGGCGAACTAGACACCCAGCCACTCATAGaacaa < 1:3446338/148‑1 (MQ=255)
tGCGTTAACGCCGGAACAACAGCAGGAAATGGGTCAACAAGCCGCTACCCGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCTGTATTCCTCTCTTTTGATGGCGAACTAGACACCCAGCCACTCATAGAACAActc < 2:2038039/148‑1 (MQ=255)
tGCGTTAACGCCGGAACAACAGCAGGAAATGGGTCAACAAGCCGCTACCCGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCTGTATTCCTCTCTTTTGATGGCGAACTAGACACCCAGCCACTCATAGAACAActc < 2:1670647/148‑1 (MQ=255)
aCGCCGGAACAACAGCAGGAAATGGGTCAACAAGCCGCTACCCGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCTGTATTCCTCTCTTTTTATGGCGAACTAGACACCCAGCCACACATAGAAAAACACTGgcgcg > 2:3012254/1‑148 (MQ=255)
cGCCGGAACAACAGCAGGAAATGGGTCAACAAGCCGCTACCCGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCTGTATTCCTCTCTTTTTATGGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGgcgcgc > 2:1966715/1‑148 (MQ=255)
cGGAACAACAGCAGGAAATGGGTCAACAAGCCGCTACCCGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCGGTATTCCTCTCATTTGATGGCGAACTAGACACCCAGCCACTCATAGAACAACTCAGGCGCGCCgg > 2:1034221/1‑148 (MQ=255)
caacaGCAGGAAATGGGTCAACAAGCCGCTACCCGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCTGTATTCCTCTCTTTTGATGGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAgc > 2:3058659/1‑148 (MQ=255)
aacaGCAGGAAATGGGTCAACAAGCCGCTACCCGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCTGTATTCCTCTCTTTTGATGGCGAACTAGAAACCCAGCCACACATAGAACAAAACTGGCGCGCCGGGAAgcg > 2:1640694/1‑148 (MQ=255)
gAAATGGGTCAACAAGCCGCTACCCGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCTGTGTTCCTCTCTTTTGATGGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATc > 2:3373959/1‑148 (MQ=255)
gAAATGGGTCAACAAGCCGCTACCCGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCTGTATTGCGGGCGTTTTATGGCGAACAAGAAAACCACCCACGAAAAGAAAAACACAGGCGCGCCCGGAAGCGCGTATATc > 1:1701173/1‑148 (MQ=255)
gAAATGGGTCAACAAGCCGCTACCCGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCGGGATTCCTCTCTTTTGTTGGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATc > 2:1461507/1‑148 (MQ=255)
aaTGGGTCAACAAGCCGCTACCCGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCGGTATTGCTCTCTTTTTATGGCGAACAAGAAACCCCCCCCCAAAAAGAACAACAAAGGCGCGCCCGGAAGCGCGtataaaat > 1:1258847/1‑144 (MQ=255)
tGGGTCAACAAGCCGCTACCCGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCTGTATTCCTCTCTTTTGATGGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTcc > 2:1105498/1‑148 (MQ=255)
tGGGTCAACAAGCCGCTACCCGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCTGTATTCCTCTCTTTTGATGGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTcc < 1:3464389/148‑1 (MQ=255)
ggTCAACAAGCCGCTACCCGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCTGTATTCCTCTCTTTTGTTGGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAg < 1:891657/148‑1 (MQ=255)
gTCAACAAGCCGCTACCCGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCTGTATTCCTCTCTTTTGATGGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCACGCCGGTAAGCGCGTATATCTTCCAGt < 2:557858/148‑1 (MQ=255)
tCAACAAGCCGCTACCCGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCTGTATTCCTCTCTTTTGATGGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGtt < 2:420316/148‑1 (MQ=255)
tCAACAAGCCGCTACCCGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCTGTATTCCTCTCTTTTGATGGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGtt < 2:78853/148‑1 (MQ=255)
caacaaGCCGCTACCCGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCTGTATTGCGCTCTTTTGATTGCGAAATATACACCCAGCCACACATATAACAACACTGGCGCGCCGGAACGCGCGTATATATTCCactgt > 2:2308867/1‑144 (MQ=255)
caacaaGCCGCTACCCGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCTGTATTCCTCTCTTTTGATGGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGttt < 1:87705/148‑1 (MQ=255)
caacaaGCCGCTACCCGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCTGGATTCCTCTCTTTTGATGGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGttt > 2:2531458/1‑148 (MQ=255)
acaaGCCGCTACCCGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCTGGATTGCTCTCTTTTGATGGCGAACGAGACACCCCGCCACTCAAAGAACAACGCAGGCGCGCCGGGAACCGCGGATATCTTCCAGTGTTg > 2:1041764/1‑148 (MQ=255)
caaGCCGCTACCCGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCTGTATTCCTCTCTTTTGATGGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGTTTTGc < 2:2946007/148‑1 (MQ=255)
aGCCGCTACCCGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCTGTATTCCTCTCTTTTGATGGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGTTTTGCAt < 1:974185/148‑1 (MQ=255)
gCCGCTACCCGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCGGTATTCCTCTCGTTTGTTGGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTGCAGGTTTgactc > 2:1269053/1‑144 (MQ=255)
gCCGCTACCCGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCGGGTTTGCGCTCTTTTTTTGGGGAACTAGACAACCAGCCCCGCAGAGAACAACACTGGCGCGCCGGGCAGCGCGTATATCTTCCAGTTTTGGATc > 1:1597259/1‑148 (MQ=255)
cGCTACCCGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCTGTTTTACGCTGTTTTTTTTGCGAACAATACACCCAGCCACACATAGAACAACACGGGCGCGCCGGGAAGCGCGGATATCTTGCAGTTTTTCATccc > 1:228625/1‑148 (MQ=255)
gCTACCCGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCTGTATTCCTCTCTTTTGATGGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGTTTTGCATCCCt < 1:450752/148‑1 (MQ=255)
cTACCCGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCTGTATTCCTCTCTTTTGATGGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGTTTTGCATCCCtt < 2:2194652/148‑1 (MQ=255)
cTACCCGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCTGTATTCCTCTCTTTTGATGGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGTTTTGCATCCCtt < 2:26955/148‑1 (MQ=255)
cTACCCGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCTGTATTCCTCTCTTTTGATGGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGTTTTGCATCCCtt < 2:2569263/148‑1 (MQ=255)
cccGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCTGTATTCCTCTCTTTTGATGGGGAACTAGACACCCAGCCACACATAGAACAACACTGGCGCGCCGGGAAGCGCGTATATCTTCCAGTTTTGCATCCCTTTAg > 1:1744149/1‑148 (MQ=255)
cccGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCTGTATTCCTCTCTTTTGATGGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGTTTTGCATCCCTTTAg < 2:1125553/148‑1 (MQ=255)
ccGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCTGTATTCCTCTCTTTTGATGGCGAACTAGACACCCAGCCCCTCATAGAACAACTCTGGCGCGCCGGGAAGCGCGGATATCTTCCAGGTTTGCATCCCGTTAgg > 2:1609495/1‑147 (MQ=255)
atgatgACTTATCCCCCGGTGGTGATGGCACATACGGTCGCTGTATTCCTCTCTTTTGATGGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGTTTTGCATCCCTTTAGTGCCg < 1:2857074/148‑1 (MQ=255)
gatgaCTTATCCCCCGGTGGTGATGGCACATACGGTCGCTGTATTCCTCTCTTTTGTTTGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGGAAGCGCGTATATCTTCCCGTTTTGCATCCCATTAGTGCCGGt > 2:2149145/1‑148 (MQ=255)
atgaCTTATCCCCCGGTGGTGATGGCACATACGGTCGCTGTATTGCACTCTTTTTTTTGACAAAAATACACCCCGCCACAAAAAGAAAAAAAATTGCCCGCCCGAAAGAGCGAATAAAATACAGTTTTGAATCCCTTTAGTGCCggga > 2:2940604/1‑146 (MQ=255)
atgaCTTATCCCCCGGTGGTGATGGCACATACGGTCGCTGTATTCCTCTCTTTTTATGGCGAACTAGACAACCAGCCACACATATAAAAAATCTGGCGCGCCGGTAAGCGCGTATATATTACAGTTTTGCATCCCTTTAGTGGCGGTa > 2:1011138/1‑148 (MQ=255)
atgaCTTATCCCCCGGTGGTGATGGCACATACGGTCGCTGTATTCCTCTCTTTTGATGGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGTTTTGCATCCCTTTAGTGCCGGTa > 2:3214236/1‑148 (MQ=255)
atgaCTTATCCCCCGGTGGTGATGGCACATACGGTCGCTGTATTCCTCTCTTTTGATGGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGTTTTGCATCCCTTTAGTGCCGGTa < 1:1629062/148‑1 (MQ=255)
tgaCTTATCCCCCGGTGGTGATGGCACATACGGTCGCTGTATTCCTCTCTTTTGATGGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGTTTTGCATCCCTTTAGTGCCGGTaa < 1:79628/148‑1 (MQ=255)
tATCCCCCGGTGGTGATGGCACATACGGTCGCTGTATTCCTCTCTTTTGATGGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGTTTTGCATCCCTTTAGTGCCGGTAATTTGc < 1:2654027/148‑1 (MQ=255)
ccGGTGGTGATGGCACATACGGTCGCTGTATTCCTCTCTTTTGATGGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGTTTTGCATCCCTTTAGTGCCGGTAATTTGCTGTTcc < 2:2546769/148‑1 (MQ=255)
tggtgATGGCACATACGGTCGCTGTATTCCTCTCTTTTGATGGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGTTTTGCATCCCTTTAGTGCCGGGAATTTGCTGTTCCTGaa > 2:825920/1‑148 (MQ=255)
tgATGGCACATACGGTCGCTGTATTCCTCTCTTTTGATGGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGTTTTGCATCCCTTTAGTGCCGGTAATTTGCTGTTCCTGAATTa < 1:2490035/148‑1 (MQ=255)
gATGGCACATACGGTCGCTGTATTCCTCTCTTTTGATGGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGTTTTGCATCCCTTTAGTGCCGGTAATTTGCTGTTCCTGAATTAc < 2:1617649/148‑1 (MQ=255)
aTGGCACATACGGTCGCTGTATTCCTCTCTTTTGATGGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGTTTTGCATCCCTTTAGTGCCGGTAATTTGCTGTTCCTGAATTAcc < 1:2410616/148‑1 (MQ=255)
tACGGTCGCTGTATTCCTCTCTTTTGATGGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGTTTTGCATCCCTTTAGTGCCGGTAATTTGCTGTTCCTGAATTACCATCCGCaa < 1:2085429/148‑1 (MQ=255)
tACGGTCGCTGTATTCCTCTCTTTTGATGGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGTTTTGCATCCCTTTAGTGCCGGTAATTTGCTGTTCCTGAATTACCATCCGCaa < 1:3058659/148‑1 (MQ=255)
cGGTCGCTGTATTCCTCTCTTTTGATGGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGTTTTGCATCCCTTTAGTGCCGGTAATTTGCTGTTCCTGAATTACCATCCGCAAAg < 1:1062390/148‑1 (MQ=255)
cGGTCGCTGTATTCCTCTCTTTTGATGGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGTTTTGCATCCCTTTAGTGCCGGTAATTTGCTGTTCCTGAATTACCATCCGCAAAg < 2:1590678/148‑1 (MQ=255)
cGGTCGCTGTATTCCTCTCTTTTGATGGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGTTTTGCATCCCTTTAGTGCCGGTAATTTGCTGTTCCTGAATTACCATCCGCAAAg < 2:1388467/148‑1 (MQ=255)
ggTCGCTGTATTCCTCTCTTTTGATGGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGTTTTGCATCCCTTTAGTGCCGGTAATTTGCTGTTCCTGAATTACCATCCGCAAAGc < 2:1554754/148‑1 (MQ=255)
tCGCTGTATTCCTCTCTTTTGATGGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGTTTTGCATCCCTTTAGTGCCGGTAATTTGCTGTTCCTGAATTACCATCCGCAAAGCGa < 2:1822554/148‑1 (MQ=255)
gCTGTATTCCTCTCTTTTGATGGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGTTTTGCATCCCTTTAGTGCCGGTAATTTGCTGTTCCTGAATTACCATCCGCAAAGCGAAc < 2:509/148‑1 (MQ=255)
cTGTATTCCTCTCTTTTGATGGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGTTTTGCATCCCTTTAGTGCCGGTAATTTGCTGTTCCTGAATTACCATCCGCAAAGCGAACt > 2:2736213/1‑148 (MQ=255)
tATTCCTCTCTTTTGATGGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGTTTTGCATCCCTTTAGTGCCGGTAATTTGCTGTTCCTGAATTACCATCCGCAAAGCGAACTGGt > 1:2162794/1‑148 (MQ=255)
tCCTCTCTTTTGATGGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGTTTTGCATCCCTTTAGTGCCGGTAATTTGCTGTTCCTGAATTACCATCCGCAAAGCGAACTGGtgat > 2:739357/1‑148 (MQ=255)
ctctctTTTGATGGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGTTTTGCATCCCTTTAGTGCCGGTAATTTGCTGTTCCTGAATTACCATCCGCAAAGCGAACTGGtgatga > 2:2426434/1‑148 (MQ=255)
tctctTTTGATGGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGTTTTGCATCCCTTTAGTGCCGGTAATTTGCTGTTCCTGAATTACCATCCGCAAAGCGAACTGGTGATGaa > 2:460512/1‑148 (MQ=255)
tctctTTTGATGGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGTTTTGCATCCCTTTAGTGCCGGTAATTTGCTGTTCCTGAATTACCATCCGCAAAGCGAACTGGTGATGaa < 1:3012254/148‑1 (MQ=255)
tctctTTTGATGGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGTTTTGCATCCCTTTAGTGCCGGTAATTTGCTGTTCCTGAATTACCATCCGCAAAGCGAACTGGTGATGaa > 2:880854/1‑148 (MQ=255)
tctctTTTGATGGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGTTTTGCATCCCTTTAGTGCCGGTAATTTGCTGTTCCTGAATTACCATCCGCAAAGCGAACTGGTGATGaa > 2:2350055/1‑148 (MQ=255)
ctctTTTGATGGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGTTTTGCATCCCTTTAGTGCCGGTAATTTGCTGTTCCTGAATTACCATCCGCAAAGCGAACTGGTGATGAAc < 1:1401156/148‑1 (MQ=255)
ctctTTTGATGGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGTTTTGCATCCCTTTAGTGCCGGTAATTTGCTGTTCCTGAATTACCATCCGCAAAGCGAACTGGTGATGAAc > 1:655855/1‑148 (MQ=255)
ctctTTTGATGGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGTTTTGCATCCCTTTAGTGCCGGTAATTTGCTGTTCCTGAATTACCATCCGCAAAGCGAACTGGTGATGAAc < 1:3307770/148‑1 (MQ=255)
tctcTTGATGGCGAACTAGACCCCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGGTTATCTTCCAGTTTTGCATCCCTTTAGTGCCGGTAATTTGCTGTTCCTGAATGACCATCCGCAAAGCGAACTGGTGATGAACa < 2:1265603/148‑1 (MQ=255)
tctTTTGATGGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGTTTTGCATCCCTTTAGTGCCGGTAATTTGCTGTTCCTGAATTACCATCCGCAAAGCGAACTGGTGATGAACa > 2:2711017/1‑148 (MQ=255)
tctTTTGATGGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGTTTTGCATCCCTTTAGTGCCGGTAATTTGCTGTTCCTGAATTACCATCCGCAAAGCGAACTGGTGATGAACa > 2:663903/1‑148 (MQ=255)
ctTTTGATGGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGTTTTGCATCCCTTTAGTGCCGGTAATTTGCTGTTCCTGAATTACCATCCGCAAAGCGAACTGGTGATGAACAg > 2:2332045/1‑148 (MQ=255)
ctTTTGATGGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGTTTTGCATCCCTTTAGTGCCGGTAATTTGCTGTTCCTGAATTACCATCCGCAAAGCGAACTGGTGATGAACAg < 1:2149145/148‑1 (MQ=255)
tttGATGGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGTTTTGCATCCCTTTAGTGCCGGTAATTTGCTGTTCCTGAATTACCATCCGCAAAGCGAACTGGTGATGAACAGGt < 1:1034221/148‑1 (MQ=255)
tGATGGCTAACTCGACACCCAGCCACTCATAGAACCACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGTTTTGCATCCCTTTAGTGCCGGTAATTTGCTGTTCCTGAATTACCATCCGCAAAGCGAACTGGTGATGAACAGGTTg < 1:153732/148‑1 (MQ=255)
gATGGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGTTTTGCATCCCTTTAGTGCCGGTAATTTGCTGTTCCTGAATTACCATCCGCAAAGCGAACTGGTGATGAACAGGTTGa < 2:1010795/148‑1 (MQ=255)
gATGGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGTTTTGCATCCCTTTAGTGCCGGTAATTTGCTGTTCCTGAATTACCATCCGCAAAGCGAACTGGTGATGAACAGGTTGa < 2:889829/148‑1 (MQ=255)
ggCGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGTTTTGCATCCCTTTAGTGCCGGTAATTTGCTGTTCCTGAATTACCATCCGCAAAGCGAACTGGTGATGAACAGGTTGAAGa < 1:857592/148‑1 (MQ=255)
ggCGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGTTTTGCATCCCTTTAGTGCCGGTAATTTGCTGTTCCTGAATTACCATCCGCAAAGCGAACTGGTGATGAACAGGTTGAAGa < 1:2470557/148‑1 (MQ=255)
ggCGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGTTTTGCATCCCTTTAGTGCCGGTAATTTGCTGTTCCTGAATTACCATCCGCAAAGCGAACTGGTGATGAACAGGTTGAAGa < 1:1213609/148‑1 (MQ=255)
aaCTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGTTTTGCATCCCTTTAGTGCCGGTAATTTGCTGTTCCTGAATTACCATCCGCAAAGCGAACTGGTGATGAACAGGTTGAAGATCCa > 1:1935933/1‑148 (MQ=255)
|
GCAAAATGATTCGGCAACGTCGTCGTGCGTTAACGCCGGAACAACAGCAGGAAATGGGTCAACAAGCCGCTACCCGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCTGTATTCCTCTCTTTTGATGGCGAACTCGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGTTTTGCATCCCTTTAGTGCCGGTAATTTGCTGTTCCTGAATTACCATCCGCAAAGCGAACTGGTGATGAACAGGTTGAAGATCCA > CP009273/3049595‑3049883
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
ATCCGCAAAATGATTCGGCAACGTCGTCGTGCGTTAACGCCGGAACAACAGCAGGAAATGGGTCAACAAGCCGCTACCCGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCTGTATTCCTCTCTTTTGATGGCGAACTCGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGTTTTGCATCCCTTTAGTGCCGGTAATTTGCTGTTCCTGAATTACCATCCGCAAAGCGAACTGGTGATGAACAGGTTGAAGATCCATG > CP009273/3049591‑3049885
|
ATCCGCAAAATGATTCGGCAACGTCGTCGTGCGTTAACGCCGGAACAACAGCAGGAAATGGGTCAACAAGCCGCTACCCGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCTGTATTACTCTCTTTTTATTGCGAACTA > SRR19973065.143235/1‑150 (MQ=60)
TCCGCAAAATTATTCGGCAACGTCGTCGTGCGTTAACGCCGGAACAACAGCAGGAAATGGGTCAACAAGCCGCTACCCGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCTGTATTCCTCTCTTTTGATGGCGAACTAG < SRR19973065.232834/150‑1 (MQ=60)
CCGCAAAATGATTCGGCAACGTCGTCGTGCGTTAACGCCGGAACAACAGCAGGAAATGGGTCAACAAGCCGCTACCCGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCGGTATTCCTCTCTTTTGATGGCGAACTAGA > SRR19973065.2011178/1‑150 (MQ=60)
CAAAATGATTCGGCAACGTCGTCGTGCGTTAACGCCGGAACAACAGCAGGAAATGGGTCAACAAGCCGCTACCCGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCGGTATTGCTCTCTTTTGTTTGCGAACTAGACAC > SRR19973065.666002/1‑150 (MQ=60)
AAAATGATTCGGCAACGTCGTCGTGCGTTAACGCCGGAACAACAGCAGGAAATGGGTCAACAAGCCGCTACCCGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCTGTATTCCTCTCTTTTGATGGCGAACTAGACACC < SRR19973065.1914756/150‑1 (MQ=60)
AAAATGATTCGGCAACGTCGTCGTGCGTTAACGCCGGAACAACAGCAGGAAATGGGTCAACAAGCCGCTACCCGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCGGTATTGCTCTCTTTTGATGGCGAACTAGACACC > SRR19973065.1875934/1‑150 (MQ=60)
AATGATTCGGCAACGTCGTCGTGCGTTAACGCCGGAACAACAGCAGGAAATGGGTCAACAAGCCGCTACCCGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCTGTATTCCTCTCTTTTGATGGCGAACTAGACACCCA < SRR19973065.2781689/150‑1 (MQ=60)
ATTCGGCAACGTCGTCGTGCGTTAACGCCGGAACAACAGCAGGAAATGGGTCAACAAGCCGCTACCCGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCTGTATTGCTCTCTTTTGATGGCGTAATAGACACCCAGCCA > SRR19973065.152758/1‑150 (MQ=60)
ATTCGGCAACGTCGTCGTGCGTTAACGCCGGAACAACAGCAGGAAATGGGTCAACAAGCCGCTACCCGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCGGTATTACTCTCGTTTGATGGCGACCTAGACACCCACCCA > SRR19973065.152730/1‑150 (MQ=60)
GGCAACGTCGTCGTGCGTTAACGCCGGAACAACAGCAGGAAATGGGTCAACAAGCCGCTACCCGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCTGTATTCCTCTCTTTTGATGGCGAACTAGACACCCAGCCACTCA < SRR19973065.2034604/150‑1 (MQ=60)
TCGTCGTGCGTTAACGCCGGAACAACAGCAGGAAATGGGTCAACAAGCCGCTACCCGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCTGTATTCCTCTCTTTTGATGGCGAACTAGACACCCAGCCACTCATAGAACA < SRR19973065.2247137/150‑1 (MQ=60)
TCGTGCGTTAACGCCGGAACAACAGCAGGAAATGGGTCAACAAGCCGCTACCCGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCTGTATTCCTCTCTTTTGATGGCGAACTAGACACCCAGCCACTCATAGAACAACT < SRR19973065.2107003/150‑1 (MQ=60)
TCGTGCGTTAACGCCGGAACAACAGCAGGAAATGGGTCAACAAGCCGCTACCCGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCTGTATTCCTCTCTTTTGATGGCGAACTAGACACCCAGCCACTCATAGAACAACT < SRR19973065.763831/150‑1 (MQ=60)
TCGTGCGTTAACGCCGGAACAACAGCAGGAAATGGGTCAACAAGCCGCTACCCGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCTGTATTCCTCTCTTTTGATGGCGAACTAGACACCCAGCCACTCATAGAACAACT < SRR19973065.3468003/150‑1 (MQ=60)
TCGTGCGTTAACGCCGGAACAACAGCAGGAAATGGGTCAACAAGCCGCTACCCGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCTGTATTCCTCTCTTTTGATGGCGAACTAGACACCCAGCCACTCATAGAACAACT < SRR19973065.3467347/150‑1 (MQ=60)
GCGTTAACGCCGGAACAACAGCAGGAAATGGGTCAACAAGCCGCTACCCGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCTGTATTCCTCTCTTTTGATGGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGG < SRR19973065.2018043/150‑1 (MQ=60)
GAACAACAGCAGGAAATGGGTCAACAAGCCGCTACCCGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCTGTATTCCGCTCTTTTGTTTGCGAAAAAGACACCCACCCACACATAGAACAAAACTGGCGCGCCGGgtag > SRR19973065.1628503/1‑146 (MQ=60)
GGAAATGGGTCAACAAGCCGCTACCCGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCTGTATTCCTCTCTTTTGATGGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCT < SRR19973065.234083/150‑1 (MQ=60)
GGAAATGGGTCAACAAGCCGCTACCCGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCTGTATTCCTCTCTTTTGATGGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCT < SRR19973065.1235985/150‑1 (MQ=60)
ATGGGTCAACAAGCCGCTACCCGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCTGTATTACTCTCTTTTGTTGGCGAACTAGACACCCAGCCACACATATAACAACACTGGCGCGCCGGTAAGCGCGTATATCTTCCA > SRR19973065.2882949/1‑150 (MQ=60)
TGGGTCAACAAGCCGCTACCCGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCTGTATTCCTCTCTTTTGATGGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAG < SRR19973065.3485488/150‑1 (MQ=60)
GGTCAACAAGCCGCTACCCGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCTGTATTCCTCTCTTTTGTTGGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGTT < SRR19973065.897311/150‑1 (MQ=60)
TCAACACGCCGCTACCCGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCTGTAGTCCTCTCTTTTGATGGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGTTTT < SRR19973065.896758/150‑1 (MQ=60)
CAACAAGCCGCTACCCGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCTGTATTCCTCTCTTTTGATGGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGTTTTG < SRR19973065.88097/150‑1 (MQ=60)
CAACAAGCCGCTACCCGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCTGTATTCCTCTCTTTTGATGGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGTTTTG < SRR19973065.88554/150‑1 (MQ=60)
AAGCCGCTACCCGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCGGGTTTGCGCTCTTTTTTTGGGGAACTAGACAACCAGCCCCGCAGAGAACAACACTGGCGCGCCGGGCAGCGCGTATATCTTCCAGTTTTGGATC > SRR19973065.1607928/1‑150 (MQ=60)
AGCCGCTACCCGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCTGTATTCCTCTCTTTTGATGGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGTTTTGCATCC < SRR19973065.2746237/150‑1 (MQ=60)
AGCCGCTACCCGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCTGTATTCCTCTCTTTTGATGGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGTTTTGCATCC < SRR19973065.980655/150‑1 (MQ=60)
AGCCGCTACCCGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCTGTATTCCTCTCTTTTGATGGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGTTTTGCATCC < SRR19973065.980656/150‑1 (MQ=60)
GCCGCTACCCGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCTGTTTTACGCTGTTTTTTTTGCGAACAATACACCCAGCCACACATAGAACAACACGGGCGCGCCGGGAAGCGCGGATATCTTGCAGTTTTTCATCCC > SRR19973065.230299/1‑150 (MQ=60)
CTCTACCCGTATGATGTCTTATGCCGCGGTGGTGATGGCACATTCGGTCTCTTTTTTCCTCTCTTTTGATGGCGAACTATCCACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGTTTTGCATCCCTT < SRR19973065.2218458/150‑1 (MQ=60)
CGCTACCCGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCTGTATTCCTCTCTTTTGATGGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGTTTTGCATCCCTT < SRR19973065.439100/150‑1 (MQ=60)
GCTACCCGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCTGTATTCCTCTCTTTTGATGGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGTTTTGCATCCCTTT < SRR19973065.453876/150‑1 (MQ=60)
CTACCCGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCGGTGTTCGTCTCTTTTGTTTGCGAACTATACACCCACCCACACAAATAACAAATCAGGGGCGCCGGGAAGCGCGTATATattgcagattttgataccgtta > SRR19973065.2722749/1‑128 (MQ=48)
TACCCGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCTGTATTCCTCTCTTTTGATGGGGAACTAGACACCCAGCCACACATAGAACAACACTGGCGCGCCGGGAAGCGCGTATATCTTCCAGTTTTGCATCCCTTTAG > SRR19973065.1755655/1‑150 (MQ=60)
TACCCGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCTGTATTACTCTCTTTTGTTGGCGAACTAGACACCCACCCACACATAGAACAACTCGGGCGCGCCGGTAAGCGCGTATATATTACAGTTTTTCATCCCTTTAG > SRR19973065.1755643/1‑150 (MQ=60)
ATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCTGTATTCCTCTCTTTTGATGGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGTTTTGCATCCCTTTAGTGCCGGT < SRR19973065.2874627/150‑1 (MQ=60)
ATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCTGTATTCCTCTCTTTTGATGGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGTTTTGCATCCCTTTAGTGCCGGTAAT < SRR19973065.1639983/150‑1 (MQ=60)
ATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCTGTATTCCTCTCTTTTGATGGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGTTTTGCATCCCTTTAGTGCCGGTAAT < SRR19973065.1686108/150‑1 (MQ=60)
TGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCTGTATTCCTCTCTTTTGATGGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGTTTTGCATCCCTTTAGTGCCGGTAATT < SRR19973065.80429/150‑1 (MQ=60)
TGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCTGTATTCCTCTCTTTTGATGGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGTTTTGCATCCCTTTAGTGCCGGTAATT < SRR19973065.80430/150‑1 (MQ=60)
TTATCCCCCGGTGGTGATGGCACATACGGTCGCTGTATTCCTCTCTTTTGATGGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGTTTTGCATCCCTTTAGTGCCGGTAATTTGCT < SRR19973065.187531/150‑1 (MQ=60)
TATCCCCCGGTGGTGATGGCACATACGGTCGCTGTATTCCTCTCTTTTGATGGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGTTTTGCATCCCTTTAGTGCCGGTAATTTGCTG < SRR19973065.2670382/150‑1 (MQ=60)
TATCCCCCGGTGGTGATGGCACATACGGTCGCTGTATTCCTCTCTTTTGATGGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGTTTTGCATCCCTTTAGTGCCGGTAATTTGCTG < SRR19973065.2670420/150‑1 (MQ=60)
ATCCCCCGGTGGTGATGGCACATACGGTCGCGGTATTGCGCTCTTTTTATTGCGGACTAGACACCCAGCCACACAAAGAACAAAACTGGCGCGCCGGGAAGCGCGGATATATTGCAGTTTTTGAACCCATTAGTGCCGGTGATTTGCTGG > SRR19973065.2444468/1‑150 (MQ=36)
TCCCCCGGTGGTGATGGCACATACGGTCGCTGTTTTGCTCTCGTTTGTTTGCGGACTAGACACCCACCCACCCAAAGAACAAATCTGGCGCCCCCGTAAGCGCGgatatattaaagtttttcatacctttttttgcgggtagtttgtgtt > SRR19973065.1390629/1‑104 (MQ=29)
CCCCGGTGGTGATGGCACATACGGTCGCTGTATTCCTCTCTTTTGATGGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGTTTTGCATCCCTTTAGTGCCGGTAATTTGCTGTTCC < SRR19973065.137944/150‑1 (MQ=60)
cccggggcccatgccccacccggacgcggaatgcctcactattgagGGCGAACTAGACCCCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGCTTTGCATCCCTTTAGTGCCGGTAATTTGCTGTTCCT < SRR19973065.3295790/104‑1 (MQ=60)
TGGTGATGGCACATACGGTCGCTGTATTCCTCTCTTTTGATGGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGTTTTGCATCCCTTTAGTGCCGGTAATTTGCTGTTCCTGAATT < SRR19973065.862773/150‑1 (MQ=60)
TGTTGGCACATACGGTCGCTGTTTTCCTCTCTTTTGATGTCGACCTAGACACCCAGCCAATCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGTTTTGCATCCCTTTAGTGCCGGTAATTTGCTGTTCCTGAATTACC < SRR19973065.662194/150‑1 (MQ=60)
TGATGGCACATACGGTCGCTGTATTCCTCTCTTTTGATGGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGTTTTGCATCCCTTTAGTGCCGGTAATTTGCTGTTCCTGAATTACC < SRR19973065.2505701/150‑1 (MQ=60)
ATGGCACATACGGTCGCTGTATTCCTCTCTTTTGATGGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGTTTTGCATCCCTTTAGTGCCGGTAATTTGCTGTTCCTGAATTACCAT < SRR19973065.2425793/150‑1 (MQ=60)
TGGCACATACGGTCGCTGTATTCCTCTCTTTTGATGGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGTTTTGCATCCCTTTAGTGCCGGTAATTTGCTGTTCCTGAATTACCATC < SRR19973065.2881387/150‑1 (MQ=60)
GCACATACGGTCGCTGTATTCCTCTCTTTTGATGGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGTTTTGCATCCCTTTAGTGCCGGTAATTTGCTGTTCCTGAATTACCATCCG < SRR19973065.3071834/150‑1 (MQ=60)
TACGGTCGCTGTATTCCTCTCTTTTGATGGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGTTTTGCATCCCTTTAGTGCCGGTAATTTGCTGTTCCTGAATTACCATCCGCAAAG < SRR19973065.2098800/150‑1 (MQ=60)
TACGGTCGCTGTATTCCTCTCTTTTGATGGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGTTTTGCATCCCTTTAGTGCCGGTAATTTGCTGTTCCTGAATTACCATCCGCAAAG < SRR19973065.3077354/150‑1 (MQ=60)
ACGGTCGCTGTATTCCTCTCTTTTGATGGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGTTTTGCATCCCTTTAGTGCCGGTAATTTGCTGTTCCTGAATTACCATCCGCAAAGC < SRR19973065.195551/150‑1 (MQ=60)
CGGTCGCTGTATTCCTCTCTTTTGATGGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGTTTTGCATCCCTTTAGTGCCGGTAATTTGCTGTTCCTGAATTACCATCCGCAAAGCG < SRR19973065.1069429/150‑1 (MQ=60)
CGCTGTATTCCTCTCTTTTGATGGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGTTTTGCATCCCTTTAGTGCCGGTAATTTGCTGTTCCTGAATTACCATCCGCAAAGCGAACT < SRR19973065.1112745/150‑1 (MQ=60)
CGCTGTATTCCTCTCTTTTGATGGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGTTTTGCATCCCTTTAGTGCCGGTAATTTGCTGTTCCTGAATTACCATCCGCAAAGCGAACT < SRR19973065.1486692/150‑1 (MQ=60)
CGCTGTATTCCTCTCTTTTGATGGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGTTTTGCATCCCTTTAGTGCCGGTAATTTGCTGTTCCTGAATTACCATCCGCAAAGCGAACT < SRR19973065.2039919/150‑1 (MQ=60)
TGTATTCCTCTCTTTTGATGGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGTTTTGCATCCCTTTAGTGCCGGTAATTTGCTGTTCCTGAATTACCATCCGCAAAGCGAACTGGT > SRR19973065.2176034/1‑150 (MQ=60)
TGTATTCCTCTCTTTTGATGGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGTTTTGCATCCCTTTAGTGCCGGTAATTTGCTGTTCCTGAATTACCATCCGCAAAGCGAACTGGT > SRR19973065.2176693/1‑150 (MQ=60)
TGTATTCCTCTCTTTTGATGGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGTTTTGCATCCCTTTAGTGCCGGTAATTTGCTGTTCCTGAATTACCATCCGCAAAGCGAACTGGT < SRR19973065.2263473/150‑1 (MQ=60)
CCTCTCTTTTGATGGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGTTTTGCATCCCTTTAGTGCCGGTAATTTGCTGTTCCTGAATTACCATCCGCAAAGCGAACTGGTGATGAA > SRR19973065.3328632/1‑150 (MQ=60)
CTCTCTTTTGATGGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGTTTTGCATCCCTTTAGTGCCGGTAATTTGCTGTTCCTGAATTACCATCCGCAAAGCGAACTGGTGATGAAC > SRR19973065.660176/1‑150 (MQ=60)
TCTCTTTTGATGGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGTTTTGCATCCCTTTAGTGCCGGTAATTTGCTGTTCCTGAATTACCATCCGCAAAGCGAACTGGTGATGAACA < SRR19973065.3030701/150‑1 (MQ=60)
CTCTTTTGATGGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGTTTTGCATCCCTTTAGTGCCGGTAATTTGCTGTTCCTGAATTACCATCCGCAAAGCGAACTGGTGATGAACAG < SRR19973065.1410343/150‑1 (MQ=60)
CTCTTTTGATGGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGTTTTGCATCCCTTTAGTGCCGGTAATTTGCTGTTCCTGAATTACCATCCGCAAAGCGAACTGGTGATGAACAG < SRR19973065.3327930/150‑1 (MQ=60)
CTTTTGATGGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGTTTTGCATCCCTTTAGTGCCGGTAATTTGCTGTTCCTGAATTACCATCCGCAAAGCGAACTGGTGATGAACAGGT < SRR19973065.2162963/150‑1 (MQ=60)
TTTGATGGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGTTTTGCATCCCTTTAGTGCCGGTAATTTGCTGTTCCTGAATTACCATCCGCAAAGCGAACTGGTGATGAACAGGTTG < SRR19973065.1041097/150‑1 (MQ=60)
TTTGATGGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGTTTTGCATCCCTTTAGTGCCGGTAATTTGCTGTTCCTGAATTACCATCCGCAAAGCGAACTGGTGATGAACAGGTTG < SRR19973065.1041067/150‑1 (MQ=60)
TGATGGCTAACTCGACACCCAGCCACTCATAGAACCACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGTTTTGCATCCCTTTAGTGCCGGTAATTTGCTGTTCCTGAATTACCATCCGCAAAGCGAACTGGTGATGAACAGGTTGAA < SRR19973065.155017/150‑1 (MQ=60)
TGATGGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGTTTTGCATCCCTTTAGTGCCGGTAATTTGCTGTTCCTGAATTACCATCCGCAAAGCGAACTGGTGATGAACAGGTTGAA < SRR19973065.155223/150‑1 (MQ=60)
GGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGTTTTGCATCCCTTTAGTGCCGGTAATTTGCTGTTCCTGAATTACCATCCGCAAAGCGAACTGGTGATGAACAGGTTGAAGATC < SRR19973065.2486143/150‑1 (MQ=60)
GGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGTTTTGCATCCCTTTAGTGCCGGTAATTTGCTGTTCCTGAATTACCATCCGCAAAGCGAACTGGTGATGAACAGGTTGAAGATC < SRR19973065.2486116/150‑1 (MQ=60)
GGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGTTTTGCATCCCTTTAGTGCCGGTAATTTGCTGTTCCTGAATTACCATCCGCAAAGCGAACTGGTGATGAACAGGTTGAAGATC < SRR19973065.863128/150‑1 (MQ=60)
GGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGTTTTGCATCCCTTTAGTGCCGGTAATTTGCTGTTCCTGAATTACCATCCGCAAAGCGAACTGGTGATGAACAGGTTGAAGATC < SRR19973065.2486092/150‑1 (MQ=60)
GGCGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGTTTTGCATCCCTTTAGTGCCGGTAATTTGCTGTTCCTGAATTACCATCCGCAAAGCGAACTGGTGATGAACAGGTTGAAGATC < SRR19973065.1221457/150‑1 (MQ=60)
CGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGTTTTGCATCCCTTTAGTGCCGGTAATTTGCTGTTCCTGAATTCCCATCCGCAAAGCGAACTGGTGATGAACAGGTTGAAGATCCA > SRR19973065.161823/1‑150 (MQ=60)
CGAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGTTTTGCATCCCTTTAGTGCCGGTAATTTGCTGTTCCTGAATTACCATCCGCAAAGCGAACTGGTGATGAACAGGTTGAAGATCCA > SRR19973065.1948606/1‑150 (MQ=60)
GAACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGTTTTGCATCCCTTTAGTGCCGGTAATTTGCTGTTCCTGAATTACCATCCGCAAAGCGAACTGGTGATGAACAGGTTGAAGATCCAT < SRR19973065.610642/150‑1 (MQ=60)
AACTAGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGTTTTGCATCCCTTTAGTGCCGGTAATTTGCTGTTCCTGAATTACCATCCGCAAAGCGAACTGGTGATGAACAGGTTGAAGATCCATG > SRR19973065.763857/1‑150 (MQ=60)
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ATCCGCAAAATGATTCGGCAACGTCGTCGTGCGTTAACGCCGGAACAACAGCAGGAAATGGGTCAACAAGCCGCTACCCGGATGATGACTTATCCCCCGGTGGTGATGGCACATACGGTCGCTGTATTCCTCTCTTTTGATGGCGAACTCGACACCCAGCCACTCATAGAACAACTCTGGCGCGCCGGTAAGCGCGTATATCTTCCAGTTTTGCATCCCTTTAGTGCCGGTAATTTGCTGTTCCTGAATTACCATCCGCAAAGCGAACTGGTGATGAACAGGTTGAAGATCCATG > CP009273/3049591‑3049885
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
