Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A14 F1 I2 R1 774 49.2 2112398 96.9% 2046913 118.5

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,709,561 (C)6→7 coding (915/1692 nt) eptB ← KDO phosphoethanolamine transferase, Ca(2+)‑inducible

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,709,5551.C97.6% 281.8 / ‑0.8 82coding (921/1692 nt)eptBKDO phosphoethanolamine transferase, Ca(2+)‑inducible
Reads supporting (aligned to +/- strand):  ref base . (1/1);  new base C (38/42);  total (39/43)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.62e-01

Only 100 of 103 total aligned reads displayed.

AGCAATGTTGTCCGCCATCGTGTTGCTGTAGAACCACATTTCGCTCTGCATAGCGTAGAGGTCAGAACTGAATCCTAACTGCTTCAGAACCGCGAAAATGTTCTGTTCTTTTAATGTGCGCTGCGGATTATCTTCCGCG‑C‑CCCCCTGACGTACAAACATGCAACGCAGTGAGAGTTTGGTTGCGGTATCACAGGAGTAACCACGGAACGCCGCCAGATTTTTCTCCTGGGCCAGTTTCGGCGTGGTATTACGCTCATAGCCGAAAATACCCA  >  NC_000913/3709417‑3709688
                                                                                                                                           |                                                                                                                                      
aGCAATGTTGTCCGCCATCGTGTTGCTGTAGAACCACATTTCGCTCTGCATAGCGTAGAGGTCAGAACTGAATCCTAACTGCTTCAGAACCGCGAAAATGTTCTGTTCTTTTAATGTGCGCTGCGGATTATCTTCcgcg                                                                                                                                         <  2:404000/139‑1 (MQ=255)
 gCAATGTTGTCCGCCATCGTGTTGCTGTAGAACCACATTTCGCTCTGCATAGCGTAGAGGTCAGAACTGAATCCTAACTGCTTCAGAACCGCGAAAATGTTCTGTTCTTTTAATGTGCGCTGCGGATTATCTTCCgcg‑c                                                                                                                                       >  2:87294/1‑139 (MQ=255)
 gCAATGTTGTCCGCCATCGTGTTGCTGTAGAACCACATTTCGCTCTGCATAGCGTAGAGGTCAGAACTGAATCCTAACTGCTTCAGAACCGCGAAAATGTTCTGTTCTTTTAATGTGCGCTGCGGATTATCTTCCgcg‑c                                                                                                                                       <  1:142720/139‑1 (MQ=255)
 gCAATGTTGTCCGCCATCGTGTTGCTGTAGAACCACATTTCGCTCTGCATAGCGTAGAGGTCAGAACTGAATCCTAACTGCTTCAGAACCGCGAAAATGTTCTGTTCTTTTAATGTGCGCTGCGGATTATCTTCCgcg‑c                                                                                                                                       <  2:653594/139‑1 (MQ=255)
 gCAATGTTGTCCGCCATCGTGTTGCTGTAGAACCACATTTCGCTCTACATAGCGTAGAGGTCAGAACTGAATCCTAACTGCTTCAGAACCGCGAAAATGTTCTGTTCTTTTAATGTGCGCTGCGGATTATCTTCCgcg‑c                                                                                                                                       <  2:90535/139‑1 (MQ=255)
 gCAATGTTGTCCGCCATCGTGTTGCTGTAGAACCACATCTCGCTCTGCATAGCGTAGAGGTCAGAACTGAATCCTAACTGCTTCAGAACCGCGAAAATGTTCTGTTCTTTTAATGTGCGCTGCGGATTATCTTCCgcg‑c                                                                                                                                       <  2:441063/139‑1 (MQ=255)
      gttttCCCCCATCGTGTTGCTGTAGAACCACATTTCGCTCTGCATAGCGTAGAGGTCAGAACTTAATCCTAACTGCTTCACAACCGCGAAAATGTTCTGTTCTTTTAATGTGCGCTGCGGATTATCTTCCGCG‑c‑ccccc                                                                                                                                 <  2:642141/139‑1 (MQ=255)
      gttgtCCGCCATCGTGTTGCTGTAGAACCACATTTCGCTCTGCATAGCGTAGAGGTCAGAACTGAATCCTAACTGCTTCAGAACCGCGAAAATGTTCTGTTCTTTTAATGTGCGCTGCGGATTATCTTCCGCG‑c‑ccccc                                                                                                                                 >  2:710282/1‑139 (MQ=255)
      gttgtCCGCCATCGTGTTGCTGTAGAACCACATTTCGCTCTGCATAGCGTAGAGGTCAGAACTGAATCCTAACTGCTTCAGAACCGCGAAAATGTTCTGTTCTTTTAATGTGCGCTGCGGATTATCTTCCGCG‑c‑ccccc                                                                                                                                 >  2:104772/1‑139 (MQ=255)
       ttgtCCGCCATCGTGTTGCTGTAGAACCACATTTCGCTCTGCATAGCGTAGAGGTCAGAACTGAATCCTAACTGCTTCAGAACCGCGAAAATGTTCTGTTCTTTTAATGTGCGCTGCGGATTATCTTCCGCG‑c‑cccccc                                                                                                                                <  2:332033/139‑2 (MQ=255)
       ttgtCCGCCATCGTGTTGCTGTAGAACCACATTTCGCTCTGCATAGCGTAGAGGTCAGAACTGAATCCTAACTGCTTCAGAACCGCGAAAATGTTCTGTTCTTTTAATGTGCGCTGCGGATTATCTTCCGCG‑c‑cccccc                                                                                                                                <  2:176574/139‑2 (MQ=255)
       ttgtCCGCCATCGTGTTGCTGTAGAACCACATTTCGCTCTGCATAGCGTAGAGGTCAGAACTGAATCCTAACTGCTTCAGAACCGCGAAAATGTTCTGTTCTTTTAATGTGCGCTGCGGATTATCTTCCGCG‑c‑cccccc                                                                                                                                <  2:546084/139‑2 (MQ=255)
       ttgtCCGCCATCGTGTTGCTGTAGAACCACATTTCGCTCTGCATAGCGTAGAGGTCAGAACTGAATCCTAACTGCTTCAGAACCGCGAAAATGTTCTGTTCTTTTAATGTGCGCTGCGGATTATCTTCCGCG‑c‑cccccc                                                                                                                                <  1:371851/139‑2 (MQ=255)
       ttgtCCGCCATCGTGTTGCTGTAGAACCACATTTCGCTCTGCATAGCGTAGAGGTCAGAACTGAATCCTAACTGCTTCAGAACCGCGAAAATGTTCTGTTCTTTTAATGTGCGCTGCGGATTATCTTCCGCG‑c‑cccccc                                                                                                                                >  1:17907/1‑138 (MQ=255)
         gtCCGCCATCGTGTTGCTGTAGAACCACATTTCGCTCTGCATAGCGTAGAGGTCAGAACTGAATCCTAACTGCTTCAGAACCGCGAAAATGTTCTGTTCTTTTAATGTGCGCTGCGGATTATCTTCCGCG‑c‑cccccctg                                                                                                                              <  2:830385/139‑4 (MQ=255)
            cGCCATCGTGTTGCTGTAGAACCACATTTCGCTCTGCATAGCGTAGAGGTCAGAACTGAATCCTAACTGCTTCAGAACCGCGAAAATGTTCTGTTCTTTTAATGTGCGCTGCGGATTATCTTCCGCGCC‑CCCCCTGACg                                                                                                                            >  1:397085/1‑139 (MQ=255)
                 tCGTGTTGCTGTAGAACCACATTTCGCTCTGCATAGCGTAGAGGTCAGAACTGAATCCTAACTGCTTCAGCACCGCGAAAATGTTCTGTTCTTTTAATGTGCGCTGCGGATTATCTTCCGCGCC‑CCCCCTGACGTACaa                                                                                                                       <  1:489408/139‑1 (MQ=255)
                 tCGTGTTGCTGTAGAACCACATTTCGCTCTGCATAGCGTAGAGGTCAGAACTGAATCCTAACTGCTTCAGAACCGCGAAAATGTTCTGTTCTTTTAATGTGCGCTGCGGATTATCTTCCGCGCC‑CCCCCTGACGTACaa                                                                                                                       <  2:152577/139‑1 (MQ=255)
                  cGTGTTGCTGTAGAACCACATTTCGCTCTGCATAGCGTAGAGGTCAGAACTGAATCCTAACTGCTTCAGAACCGCGAAAATGTTCTGTTCTTTTAATGTGCGCTGCGGATTATCTTCCGCGCC‑CCCCCTGACGTACaaa                                                                                                                      >  1:868290/1‑139 (MQ=255)
                       tGCTGTAGAACCACATTTCGCTCTGCATAGCGTAGAGGTCAGAACTGAATCCTAACTGCTTCAGAACCGCGAAAATGTTCTGTTCTTTTAATGTGCGCTGCGGATTATCTTCCGCGCC‑CCCCCTGACGTACAAACATGc                                                                                                                 <  2:739841/139‑1 (MQ=255)
                       tGCTGTAGAACCACATTTCGCTCTGCATAGCGTAGAGGTCAGAACTGAATCCTAACTGCTTCAGAACCGCGAAAATGTTCTGTTCTTTTAATGTGCGCTGCGGATTATCTTCCGCGCC‑CCCCCTGACGTACAAACATGc                                                                                                                 <  2:301584/139‑1 (MQ=255)
                            tAGAACCACATTTCGCTCTGCATAGCGTAGAGGTCAGAACTGAATCCTAACTGCTTCAGAACCGCGAAAATGTTCTGTTCTTTTAATGTGCGCTGCGGATTATCTTCCGCG‑c‑cccccc                                                                                                                                <  1:938402/118‑2 (MQ=255)
                            tAGAACCACATTTCGCTCTGCATAGCGTAGAGGTCAGAACTGAATCCTAACTGCTTCAGAACCGCGAAAATGTTCTGTTCTTTTAATGTGCGCTGCGGATTATCTTCCGCG‑c‑cccccc                                                                                                                                >  2:938402/1‑117 (MQ=255)
                            tAGAACCACATTTCGCTCTGCATAGCGTAAAGGTCAGAACTGAATCCTAACTGCTTCCGAACCGAGAAAATGTTCTGTTCTTCTGATGTGCGCTGCGGTTTATCTTCCGCGCC‑CCCCCTGACGTACAAACATGCAACGc                                                                                                            >  2:453680/1‑139 (MQ=255)
                                 ccACATTTCGCTCTGCATAGCGTAGAGGTCAGAACTGAATCCTAACTGCTTCAGAACCGCGAAAATGTTCTGTTCTTTTAATGTGCGCTGCGGATTATCTTCCGCGCC‑CCCCCTGACGTACAAACATGCAACGCAGTga                                                                                                       >  2:3666/1‑139 (MQ=255)
                                    caTTTCGCTCTGCATAGCGTAGAGGTCAGAACTGAATCCTAACTGCTTCAGAACCGCGAAAATGTTCTGTTCTTTTAATGTGCGCTGCGGATTATCTTCCGCGCC‑CCCCCTGACGTACAAACATGCAACGCAGTGagag                                                                                                    >  1:421255/1‑139 (MQ=255)
                                      tttCGCTCTGCATAGCGTAGAGGTCAGAACTGAATCCTAACTGCTTCAGAACCGCGAAAATGTTCTGTTCTTTTAATGTGCGCTGCGGATTATCTTCCGCGCC‑CCCCCTGACGTACAAACATGCAACGCAGTGAGAGtt                                                                                                  >  1:764494/1‑139 (MQ=255)
                                         cGCTCTGCATAGCGTAGAGGTCAGAACTGAATCCTAACTGCTTCAGAACCGCGAAAATGTTCTGTTCTTTTAATGTGCGCTGCGGATTATCTTCCGCGCC‑CCCCCTGACGTACAAACATGCAACGCAGTGAGAGTTTgg                                                                                               >  2:608685/1‑139 (MQ=255)
                                           ctctGCATAGCGTAGAGGTCAGAACTGAATCCTAACTGCTTCAGAACCGCGAAAATGTTCTGTTCTTTTAATGTGCGCTGCGGATTATCTTCCGCGCC‑CCCCCTGACGTACAAACATGCAACGCAGTGAGAGTTTGGtt                                                                                             >  2:684121/1‑139 (MQ=255)
                                             ctGCATAGCGTAGAGGTCAGAACTGAATCCTAACTGCTTCAGAACCGCGAAAATGTTCTGTTCTTTTAATGTGCGCTGCGGATTATCTTCCGCGCC‑CCCCCTGACGTACAAACATGTAACGCAGTGAGAGTTTGGTTGc                                                                                           <  2:17907/139‑1 (MQ=255)
                                             ctGCATAGCGTAGAGGTCAGAACTGAATCCTAACTGCTTCAGAACCGCGAAAATGTTCTGTTCTTTTAATGTGCGCTGCGGATTATCTTCCGCGCC‑CCCCCTGACGTACAAACATGCAACGCAGTGAGAGTTTGGTTGc                                                                                           <  2:979000/139‑1 (MQ=255)
                                               gCATAGCGTAGAGGTCAGAACTGAATCCTAACTGCTTCAGAACCGCGAAAATGTTCTGTTCTTTTAATGTGCGCTGCGGATTATCTTCTGCGCC‑CCCCCTGACGTACAAACATGCAACGCAGTGAGAGTTTGGTTGCgg                                                                                         >  2:233081/1‑139 (MQ=255)
                                               gCATAGCGTAGAGGTCAGAACTGAATCCTAACTGCTTCAGAACCGCGAAAATGTTCTGTTCTTTTAATGTGCGCTGCGGATTATCTTCCGCGCC‑CCCCCTGACGTACAAACATGCAACGCAGTGAGAGTTTGGTTGCgg                                                                                         <  1:547575/139‑1 (MQ=255)
                                               gCATAGCGTAGAGGTCAGAACTGAATCCTAACTGCTTCAGAACCACTAAAATGTCCTGTTCTTTTAATGTGCGCTGCGGATTATCTTCCGCGCC‑CCCCCTGACGTACAAACATGCAACGCTGTGAGAGTTTGGTTGCgg                                                                                         <  2:585929/139‑1 (MQ=255)
                                                    gCGTAGAGGTCAGAACTGAATCCTAACTGCTTCAGAACCGCGAAAATGTTCTGTTCTTTTAATGTGCGCTGCGGATTATCTTCCGCGCC‑CCCCCTGACGTACAAACATGCAACGCAGTGAGAGTTTGGTTGCGGTATca                                                                                    <  1:87294/139‑1 (MQ=255)
                                                     cGTAGAGGTCAGAACTGAATCCTAACTGCTTCAGAACCGCGAAAATGTTCTGTTCTTTTAATGTGCGCTGCGGATTATCTTCCGCGCC‑CCCCCTGACGTACAAACATGCAACGCAGTGAGAGTTTGGTTGCGGTATcac                                                                                   <  1:3666/139‑1 (MQ=255)
                                                      cgagaaGTCAGTACCGAATCCTAACTGGTTCCGAACCGACAAAATGTTTTGTTCTTTTAATGTGCTCCTCCGATTTTCTTCCCCGCC‑CCCCCTGACGTACAAACATGCAACGCAGTGAGAGTTTGGTTGCGGTATcaca                                                                                  <  2:201119/137‑1 (MQ=255)
                                                          agGTCAGAACTGAATCCTAACTGCTTCAGAACCGCGAAAATTTTCTGTTCTTTTAATGTGCGCTGCGGATTATCTTCCGCGCC‑CCCCCTGACGTACAAACATGCAACGCAGTGAGAGTTTGGTTGCGGTATCACAGGAg                                                                              >  1:989396/1‑139 (MQ=255)
                                                          agGTCAGAACTGAATCCTAACTGCTTCAGAACCGCGAAAATGTTCTGTTCTTTTAATGTGCGCTGCGGATTATCTTCCGCGCC‑CCCCCTGACGTACAAACATGCAACGCAGTGAGAGTTTGGTTGCgg                                                                                         <  1:538078/128‑1 (MQ=255)
                                                          agGTCAGAACTGAATCCTAACTGCTTCAGAACCGCGAAAATGTTCTGTTCTTTTAATGTGCGCTGCGGATTATCTTCCGCGCC‑CCCCCTGACGTACAAACATGCAACGCAGTGAGAGTTTGGTTGCGGTATCACAGGAg                                                                              >  1:170508/1‑139 (MQ=255)
                                                          agGTCAGAACTGAATCCTAACTGCTTCAGAACCGCGAAAATGTTCTGTTCTTTTAATGAGCGCTGCGGATTATCTTCCGCGCC‑CCCCCTGACGTACAAACATGCAACGCAGTGAGAGTTTGGTTGCGGTATCACAGGAg                                                                              >  2:667940/1‑139 (MQ=255)
                                                          agGTCAGAACTGAATCCTAACTGCTTCAGAACCGCGAAAAGGTTCTGTTCTTTTAATGTGCGCTGCGGATTATCTTCCGCGCC‑CCCCCTGACGTACAAACATGCAACGCAATGAGAGTTTGGTTGCGGTATCAgaggag                                                                              >  2:152515/1‑139 (MQ=255)
                                                           ggTCAGAACTGAATCCTAACTGCTTCAGAACCGCGAAAATGTTCTGTTCTTTTAATGTGCGCTGCGGATTATCTTCCGCGCC‑CCCCCTGACGTACAAACATGCAACGCAGTGAGAGTTTGGTTGCGGTATCACAGGAGt                                                                             <  2:501156/139‑1 (MQ=255)
                                                           ggTCAGAACTGAATCCTAACTGCTTCAGAACCGCGAAAATGTTCTGTTCTTTTAATGTGCGCTGCGGATTATCTTCCGCGCC‑CCCCCTGACGTACAAACATGCAACGCAGTGAGAGTTTGGTTGCGGTATCACAGGAGt                                                                             <  1:104772/139‑1 (MQ=255)
                                                              cAGAACTGAATCCTAACTGCTTCAGAACCGCGAAAATGTTCTGTTCTTTTAATGTGCGCTGCGGATTATCTGCCGCG‑c‑cccccctg                                                                                                                              >  2:583172/1‑83 (MQ=255)
                                                              cAGAACTGAATCCTAACTGCTTCAGAACCGCGAAAATGTTCTGTTCTTTTAATGTGCGCTGCGGATTATCTGCCGCG‑c‑cccccctg                                                                                                                              <  1:583172/86‑4 (MQ=255)
                                                               aGAACTGAATCCTAACTGCTTCAGAACCGCGAAAATGTTCTGTTCTTTTAATGTGCGCTGCGGATTATCTTCCGCGCC‑CCCCCTGACGTACAAACATGCAACGCAGTGAGAGTTTGGTTGCGGTATCACAGGAGTAAcc                                                                         >  2:1045311/1‑139 (MQ=255)
                                                               aGAACTGAATCCTAACTGCTTCAGAACCGCGAAAATGTTCTGTTCTTTTAATGTGCGCTGCGGATTATCTTCCGCG‑CACCCCCTGACTTACAAACATGCAACGCAGTGAGAGTTTGGTTGCGGTATcac                                                                                   <  2:650411/129‑1 (MQ=255)
                                                               aGAACTGAATCCTAACTGCTTCAGAACCGCGAAAATGTTCTATTCTTTTAATGTGCGCTGCGGATTATCTTCCGCG‑CACCCCCTGACGTACAAACATGCAACGCAGTGAGAGTTTGGTTGCTGTATcac                                                                                   >  1:650411/1‑129 (MQ=255)
                                                                 aaCTGAATCCTAACTGCTTCAGAACCGCGAAAATGTTCTGTTCTTTTAATGTGCGCTGCGGATTATCTTCCGCGCC‑CCCCCTGACGTACAAACATGCAACGCAGTGAGAGTTTGGTTGCGGTATCACAGGAGTAACCAc                                                                       >  2:886600/1‑139 (MQ=255)
                                                                      aaTCCTAACTGCTTCAGAACCGCGAAAATGTTCTGTTCTTTTAATGTGCGCTGCTGATTATCTTCCGCGCC‑CCCCCTGACGTACAAACATGCAACGCAGTGAGAGTTTGGTTGCGGTATCACAGGAGTAACCACGGAAc                                                                  >  2:695049/1‑139 (MQ=255)
                                                                      aaTCCTAACTGCTTCAGAACCGCGAAAATGTTCTGTTCTTTTAATGTGCGCTGCGGATTATCTTCCGCGCC‑CCCCCTGACGTACAAACATGCAACGCAGTGAGAGTTTGGTTGCGGTATCACAGGAGTAACCACGGAAc                                                                  >  2:183803/1‑139 (MQ=255)
                                                                      aaTCCTAACTGCTTCAGAACCGCGAAAATGTTCTGTTCTTTTAATGTGCGCTGCGGATTATCTTCCGCGCC‑CCCCCTGACGTACAAACATGCAACGCAGTGAGAGTTTGGTTGCGGTATCACAGGAGTAACCACGGAAc                                                                  >  2:111271/1‑139 (MQ=255)
                                                                      aaTCCTAACTGCTTCAGAACCGCGAAAATGTTCTGTTCTTTTAATGTACGCTGCGGATTATCTTCCGCGCC‑CCCCCTGACGTACAAACATGCAACGCAGTGAGAGTTTGGTTGCGGTATCACAGGAGTAACCACAGAAc                                                                  >  1:190250/1‑139 (MQ=255)
                                                                           tAACTGCTTCAGAACCGCGAAAATGTTCTGTTCTTTTAATGTGCGCTGCGGATTATCTTCCGCGCC‑CCCCCTGACGTACAAACAt                                                                                                                   >  1:464508/1‑85 (MQ=255)
                                                                           tAACTGCTTCAGAACCGCGAAAATGTTCTGTTCTTTTAATGTGCGCTGCGGATTATCTTCCGCGCC‑CCCCCTGACGTACAAACAt                                                                                                                   <  2:464508/85‑1 (MQ=255)
                                                                             aCTGCTTCAGAACCGCGAAAATGTTCTGTTCTTTTAATGTGCGCTGCGGATTATCTTCCGCGCC‑CCCCCTGACGTACAAACATGCAACGCAGTGAGAGTTTGGTTGc                                                                                           >  1:1036284/1‑107 (MQ=255)
                                                                             aCTGCTTCAGAACCGCGAAAATGTTCTGTTCTTTTAATGTGCGCTGCGGATTATCTTCCGCGCC‑CCCCCTGACGTACAAACATGCAACGCAGTGAGAGTTTGGTTGc                                                                                           <  2:1036284/107‑1 (MQ=255)
                                                                             aCTGCTTCAGAACCGCGAAAATGTTCTGTTCTTTTAATGTGCGCTGCGGATTATCTTCCGCGCC‑CCCCCTGACGTACAAACATGCAACGCAGTGAGAGTTTGGTTGCGGTATCACAGGAGTAACCACGGAACGCCGCCa                                                           <  2:868290/139‑1 (MQ=255)
                                                                                gCTTCAGAACCGCGAAAATGTTCTGTTCTTTTAATGTGCGCTGCGGATTATCTTCCGCGCC‑CCCCCTGACGTACAAACATGCAACGCAGTGAGAGTTTGGTTGCGGTATCACAGGAGTAACCACGGAACGCCGCCAGAt                                                        >  2:532629/1‑139 (MQ=255)
                                                                                 cTTCAGAACCGCGAAAATGTTCTGTTCTTTTAATGTGCGCTGCGGATTATCTTCCGCGCC‑CCCCCTGACGTACAAACATGCAACGCAGTGAGAGt                                                                                                   <  1:651072/95‑1 (MQ=255)
                                                                                 cTTCAGAACCGCGAAAATGTTCTGTTCTTTTAATGTGCGCTGCGGATTATCTTCCGCGCC‑CCCCCTGACGTACAAACATGCAACGCAGTGAGAGt                                                                                                   >  2:651072/1‑95 (MQ=255)
                                                                                            cgAAAATGTTCTGTTCTTTTAATGTGCGCTGCGGATTATCTTCCGCGCC‑CCCCCTGACGTACAAACATGCAACGCAGTGAGAGTTTGGTTGCGGTATCACAgg                                                                                <  2:404727/103‑1 (MQ=255)
                                                                                            cgAAAATGTTCTGTTCTTTTAATGTGCGCTGCGGATTATCTTCCGCGCC‑CCCCCTGACGTACAAACATGCAACGCAGTGAGAGTTTGGTTGCGGTATCACAgg                                                                                >  1:404727/1‑103 (MQ=255)
                                                                                            cgAAAATGTTCTGTTCTTTTAATGTGCGCTGCGGATTATCTTCCGCGCC‑CCCCCTGACGTACAAACATGCAACGCAGTGAGAGTTTGGTTGCGGTATCACAGGAGTAACCACGGAACGCCGCCAGATTTTTCTCCTggg                                            >  1:886530/1‑139 (MQ=255)
                                                                                            cgAAAATGTTCTGTTCTTTTAATGTGCGCTGCGGATTATCTTCCGCGCC‑CCCCCTGACGTACAAACATGCAACGCAGTGAGAGTTTGGTTGCGGTATCACAGGAGTAACCACGGAACGCCGCCAGATTTTTCTCCTggg                                            >  2:874136/1‑139 (MQ=255)
                                                                                            cgAAAATGTTCTGTTCTTTTAATGTGCGCTGCGGATTATCTTCCGCGCC‑CCCCCTGACGTACAAACATGCAACGCAGTGAGAGTTTGGTTGCGGTATCACAGGAGTAACCACGGAACGCCGCCAGATTTTTCTCCTggg                                            >  1:133757/1‑139 (MQ=255)
                                                                                            cgAAAATGTTCTGTTCTTTTAATGTGCGCTGCGGATTATCTTCCGCGCC‑CCCCCTGACGTACAAACATGCAACGCAGTGAGAGTTTGGTTGCGGTATCACAGGAGTAACCACGGAACGCCGCCAGATTTTTCTCCTggg                                            >  1:898394/1‑139 (MQ=255)
                                                                                            cgAAAATGTTCTGTTCTTTTAATGTGCGCTGCGGATTATCTTCCGCG‑c‑cccccctga                                                                                                                             >  1:589923/1‑53 (MQ=255)
                                                                                            cgAAAATGTTCTGTTCTTTTAATGTGCGCTGCGGATTATCTTCCGCG‑c‑cccccctga                                                                                                                             <  2:589923/57‑5 (MQ=255)
                                                                                             gAAAATGTTCTGTTCTTTTAATGTGCGCTGCGGATTATCTTCCGCGCC‑CCCCCTGACGTACAAACATGCAACGCAGTGAGAGTTTGGTTGCGGTATCACAGGAGTAACCACGGAACGCCGCCAGATTTTTCTCCTGGGc                                           <  2:816977/139‑1 (MQ=255)
                                                                                                     tctgttctTTTAATGTGCGCTGCGGATTATCTTCCGCGCC‑CCCCCTGACGTACAAACATGCAACGCAGTGAGAGTTTGGTTGCGGTATCACAGGAGTAACCACGGAACGCCGCCAGATTTTTCTCCTGGGCCAGTTTCg                                   <  1:684121/139‑1 (MQ=255)
                                                                                                        gttctTTTAATGTGCGCTGCGGATTATCTTCCGCGCC‑CCCCCTGACGTACAAACATGCAACGCAGTGAGAGTTTGGTTGCGGTATCACAGGAGTAACCACGGAACGCCGCCAGATTTTTCTCCTGGGCCAGTTTCGGCg                                <  2:873135/139‑1 (MQ=255)
                                                                                                        gttctTTTAATGTGCGCTGCGGATTATCTTCCGCGCC‑CCCCCTGACGTACAAACATGCAACGCAGTGAGAGTTTGGTTGCGGTATCACAGGAGTAACCACGGAACGCCGCCAGATTTTTCTCCTGGGCCAGTTTCGGCg                                <  1:1028854/139‑1 (MQ=255)
                                                                                                        gttctTTTAATGTGCGCTGCGGATTATCTTCCGCGCC‑CCCCCTGACGTACAAACATGCAACGCAGTGAGAGTTTGGTTGCGGTATCACAGGAGTAACCACGGAACGCCGCCAGATTTTTCTCCTGGGCCAGTTTCGGCg                                <  1:886600/139‑1 (MQ=255)
                                                                                                        gttctTTTAATGTGCGCTGCGGATTATCTTCCGCGCC‑CCCCCTGACGTACAAACATGCAACGCAGTGAGAGTTTGGTTGCGGTATCACAGGAGTAACCACGGAACGCCGCCAGATTTTTCTCCTGGGCCAGTTTCGGCg                                <  2:397085/139‑1 (MQ=255)
                                                                                                         ttctTTTAATGTGCGCTGCGGATTATCTTCCGCGCC‑CCCCCTGACGTACAAACATGCaa                                                                                                               >  2:681932/1‑59 (MQ=255)
                                                                                                         ttctTTTAATGTGCGCTGCGGATTATCTTCCGCGCC‑CCCCCTGACGTACAAACATGCaa                                                                                                               <  1:681932/59‑1 (MQ=255)
                                                                                                         ttctTTTAATGTGCGCTGCGGATTATCTTCCGCGCC‑CCCCCTGACGTACAAACATGCAACGCAGTGAGAGTTTGGTTGCGGTATCACAGGAGTAACCACGGAACGCCGCCAGATTTTTCTCCTGGGCCAGTTTCGGCGt                               <  2:53857/139‑1 (MQ=255)
                                                                                                         ttctTTTAATGTGCGCTGCGGATTATCTTCCGCGCC‑CCCCCTGACGTACAAACATGCAACGCAGTGAGAGTTTGGTTGCGGTATCACAGGAGTAACCACGGAACGCCGCCAGATTTTTCTCCTGGGCCAGTTTCGGCGt                               >  1:496455/1‑139 (MQ=255)
                                                                                                          tctTTTAATGTGCGCTGCGGATTATCTTCCGCGCC‑CCCCCTGACGTACAAACATGCAACGCAGTGAGAGTTTGGTTGCGGTATCACAGGAGTAACCACGGAACGCCGCCAGATTTTTCTCCTGGGCCAGTTTCGGCGTg                              <  1:137542/139‑1 (MQ=255)
                                                                                                                   gtgCGCTGCGGATTATCTTCCGCGCC‑CCCCCTGACGTACAAACATGCAACGCAGTGAGAGTTTGGTTg                                                                                            <  1:963731/68‑1 (MQ=255)
                                                                                                                   gtgCGCTGCGGATTATCTTCCGCGCC‑CCCCCTGACGTACAAACATGCAACGCAGTGAGAGTTTGGTTg                                                                                            >  2:963731/1‑68 (MQ=255)
                                                                                                                    tgCGCTGCGGATTATCTTCCGCGCC‑CCCCCTGACGTACAAACATGCAACGCAGTGAGAGTTTGGTTGCGGTATCACAGGAGTAACCACGGAACGCCGCCAGATTTTTCTCCTGGGCCAGTTTCGGCGTGGTATTACGCt                    <  1:390174/139‑1 (MQ=255)
                                                                                                                      cgcTGCGGATTATCTTCCGCGCC‑CCCCCTGACGTACAAACATGCAACGCAGTGAGAGTTTGGTTGCGGTATCACAGGAGTAACCACGGAACGCCGCCAGATTTTTCTCCTGGGCCAGTTTCGGCGTGGTATTACGCTCa                  >  2:731829/1‑139 (MQ=255)
                                                                                                                      cgcTGCGGATTATCTTCCGCGCC‑CCCCCTGACGTACAAACATGCAACGCAGTGAGAGTTTGGTTGCGGTATCACAGGAGTAACCACGGAACGCCGCCAGATTTTTCTCCTGGGCCAGTTTCGGCGTGGTATTACGCTCa                  >  2:690610/1‑139 (MQ=255)
                                                                                                                      cgcTGCGGATTATCTTCCGCGCC‑CCCCCTGACGTACAAACATGCAACGCAGTGAGAGTTTGGTTGCGGTATCACAGGAGTAACCACGGAACGCCGCCAGATTTTTCTCCTGGGCCAGTTTCGGCGTGGTATTACGCTCa                  >  1:41468/1‑139 (MQ=255)
                                                                                                                      cgcTGCGGATTATCTTCCGCGCC‑CCCCCTGACGTACAAACATGCAACGCAGTGAGAGTTTGGTTGCGGTATCACAGGAGTAACCACGGAACGCCGCCAGATTTTTCTCCTGGGCCAGTTTCGGCGTGGTATTACGCTCa                  >  2:1006359/1‑139 (MQ=255)
                                                                                                                        cTGCGGATTATCTTCCGCGCC‑CCCCCTGACGTACAAACATGCAACGCAGTGAGAGTTTGGTTGCGGTATCACAGGAGTAACCACGGAACGCCGCCAGATTTTTCTCCTGGGCCAGTTTCGGCg                                >  2:798787/1‑123 (MQ=255)
                                                                                                                        cTGCGGATTATCTTCCGCGCC‑CCCCCTGACGTACAAACATGCAACGCAGTGAGAGTTTGGTTGCGGTATCACAGGAGTAACCACGGAACGCCGCCAGATTTTTCTCCTGGGCCAGTTTCGGCg                                <  1:798787/123‑1 (MQ=255)
                                                                                                                             gATTATCTTCCGCGCC‑CCCCCTGACGTACAAACATGCAACGCAGTGAGAGTTTGGTTGCGGTATCACAGGAGTAACCACGGAACGCCGCCAGATTTTTCTCCTGGGCCAGTTTCGGCGTGGTATTACGCTCATAGCCGa           <  2:764494/139‑1 (MQ=255)
                                                                                                                              aTTATCTTCCGCGCC‑CCCCCTGACGTACAAACATGCAACGCAGTGAGAGTTTGGTTGCgg                                                                                         >  2:569064/1‑60 (MQ=255)
                                                                                                                              aTTATCTTCCGCGCC‑CCCCCTGACGTACAAACATGCAACGCAGTGAGAGTTTGGTTGCgg                                                                                         <  1:569064/60‑1 (MQ=255)
                                                                                                                              aTTATCTTCCGCGCC‑CCCCCTGACGTACAAACATGCAACGCAGTGAGAGTTTGGTTGCGGTATCACAGGAGTAACCACGGAACGCCGCCAGATTTTTCTCCTGGGCCAGTTTCGGCGTGGTATTACGCTCATAGCCGaa          <  2:293819/139‑1 (MQ=255)
                                                                                                                              aTTATCTTCCGCGCC‑CCCCCTGACGTACAAACATGCAACGCAGTGAGAGTTTGGTTGCGGTATCACAGGAGTAACCACGGAACGCCGCCAGATTTTTCTCCTGGGCCAGTTTCGGCGTGGTATTACGCTCATAGCCGaa          <  1:233081/139‑1 (MQ=255)
                                                                                                                                   cTTCCGCGCC‑CCCCCTGACGTACAAACATGCAACGCAGTGAGAGTTTGGTTGCGGTATCACAGGAGTAACCACGGAACGCCGCCAGATTTTTCTCCTGGGCCAGTTTCGGCGTGGTATTACGCTCATAGCCGAAAATAc     <  2:898394/139‑1 (MQ=255)
                                                                                                                                   cTTCCGCGCC‑CCCCCTGACGTACAAACATGCAACGCAGTGAGAGTTTGGTTGCGGTATCACAGGAGTAACCACGGAACGCCGCCAGATTTTTCTCCTGGGCCAGTTTCGGCGTGGTATTACGCTCATAGCCGAAAATAc     <  1:690610/139‑1 (MQ=255)
                                                                                                                                   cTTCCGCGCC‑CCCCCTGACGTACAAACATGCAACGCAGTGAGAGTTTGGTTGCGGTATCACAGGAGTAACCACGGAACGCCGCCAGATTTTTCTCCTGGGCCAGTTTCGGCGTGGTATTACGCTCATAGCCGAAAATAc     <  1:731829/139‑1 (MQ=255)
                                                                                                                                    ttCCGCGCC‑CCCCCTGACGTACAAACATGCAACGCAGTGAGAGTTTGGTTGCGGTATCACAGGAGTAACCACGGAACGCCGCCAGATTTTTCTCCTGGGCCAGTTTCGGCGTGGTATTACGCTCATAGCCGAAAATAcc    <  2:133757/139‑1 (MQ=255)
                                                                                                                                      ccGCGCC‑CCCCCTGACGTACAAACATGCAACGCAGTGAGAGTTTGGTTGCGGTATCACAGGAGTAACCACGGAACGCCGCCAGATTTTTCTCCTGGGCCAGTTTCGGCGTGGTATTACGCTCATAGCCGAAAATACCCa  <  1:241937/139‑1 (MQ=255)
                                                                                                                                           |                                                                                                                                      
AGCAATGTTGTCCGCCATCGTGTTGCTGTAGAACCACATTTCGCTCTGCATAGCGTAGAGGTCAGAACTGAATCCTAACTGCTTCAGAACCGCGAAAATGTTCTGTTCTTTTAATGTGCGCTGCGGATTATCTTCCGCG‑C‑CCCCCTGACGTACAAACATGCAACGCAGTGAGAGTTTGGTTGCGGTATCACAGGAGTAACCACGGAACGCCGCCAGATTTTTCTCCTGGGCCAGTTTCGGCGTGGTATTACGCTCATAGCCGAAAATACCCA  >  NC_000913/3709417‑3709688

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A