Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A4 F27 I0 R1 322 127.1 2757226 91.8% 2531133 223.7

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 4,184,542 C→A 100% P1100Q (CCG→CAG)  rpoB → RNA polymerase, beta subunit

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,184,5420CA100.0% 450.4 / ‑6.7 129P1100Q (CCG→CAG) rpoBRNA polymerase, beta subunit
Reads supporting (aligned to +/- strand):  ref base C (1/1);  new base A (69/58);  total (70/59)
Rejected as polymorphism: E-value score below prediction cutoff.
Rejected as polymorphism: Frequency below/above cutoff threshold.
Rejected as polymorphism: Variant not supported by required number of reads on each strand.

Only 100 of 129 total aligned reads displayed.

GAAACACGAGTTCGAGAAGAAACTCGAAGCGAAACGCCGCAAAATCACCCAGGGCGACGATCTGGCACCGGGCGTGCTGAAGATTGTTAAGGTATATCTGGCGGTTAAACGCCGTATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCG‑AAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCCGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATCCAGCGTGCGTACGATCTGGGCGCTGACGTTCGTCAGAAAGTTGACCTGAGTACCTTCAGCGATGAAGAAGTTATGCGTCTGGCTGAAAACCTGCGCA  >  NC_000913/4184306‑4184775
                                                                                                                                                                                                                                             |                                                                                                                                                                                                                                         
gAAACACGAGTTCGAGAAGAAACTCGAAGCGAAACGCCGCAAAATCACCCAGGGCGACGATCTGGCACCGGGCGTGCTGAAGATTGTTAAGGTATATCTGGCGGTTAAACGCCGTATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCG‑AAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGc                                                                                                                                                                                                                                         <  1:1276546/239‑1 (MQ=255)
         gTTCGAGAAGAAACTCGAAGCGAAACGCCGCAAAATCACCCAGGGCGACGATCTGGCACCGGGCGTGCTGAAGATTGTTAAGGTATATCTGGCGGTTAAACGCCGTATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCG‑AAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACAAGCTGGGCGTa                                                                                                                                                                                                                                 >  1:748944/1‑238 (MQ=255)
         gTTCGAGAAGAAACTCGAAGCGAAACGCCGCAAAATCACCCAGGGCGACGATCTGGCACCGGGCGTGCTGAAGATTGTTAAGGTATATCTGGCGGTTAAACGCCGTATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCG‑AAGATATGCCTTACGATGAAAACGGTAAGCCGGTAGACATCGTACTGAACCAGCTGGGCGTa                                                                                                                                                                                                                                 >  1:696246/1‑238 (MQ=255)
             gaaaaggagcgcGAAGCGAAATGCCGAAAACTCACCCATGGGTGCGTACTGGCACCGGGCTTGGTGAAGTATGTTAAGGTCTATCTGGCGTTTAAACGCCGTATCCAGTCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAGCCCGATCG‑AAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGt                                                                                                                                                                                                                             <  2:1068740/227‑1 (MQ=255)
                   aaaCTGGAAGCGAAACGCCGCAAAATCCCCCAGGGCGACGATCTGGCACCGGGCGGGCTGAAGATTGTTAAGGTATATCTGGCGGTTAAACGCCGTATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCG‑AAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTAt                                                                                                                                                                                                                      <  2:641560/239‑1 (MQ=255)
                   aaaCTCGAAGCGAAACGCCGCAAAATCACCCAGGGCGACGATCTGGCACCGGGCGTGCTGAAGATTGTTAAGGTATATCTGGCGGTTAAACGCCGTATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCG‑AAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGACCCAGCTGGGCGTACCGGCCCGttg                                                                                                                                                                                                                      >  2:368365/1‑237 (MQ=255)
                   aaaCTCGAAGCGAAACGCCGCAAAATCACCCAGGGCGACGATCTGGCACCGGGCGTGCTGAAGATTGTTAAGGTATATCTGGCGGTTAAACGCCGTATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCG‑AAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCCCGTAt                                                                                                                                                                                                                      >  1:382205/1‑239 (MQ=255)
                      cTCGAAGCGAAACGCCGCAAAATCACCCAGGGCGACGATCTGGCACCGGGCGTGCTGAAGATTGTTAAGGTATATCTGGCGGTTAAACGCCGTATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCG‑AAGATATGCCTTACGATGAAACCGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGa                                                                                                                                                                                                                    >  1:23450/1‑238 (MQ=255)
                        cGAAGCGAAACTCCGCAAAATCCCCCTGGGCGGCGTTCTGGCACCGGTCGTGCTGAAGATTGTTAAGGTATATCTGGCGGTTAAACGCCGTATCAAGGCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCG‑AAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACa                                                                                                                                                                                                                 <  2:670678/239‑1 (MQ=255)
                        cGAAGCGAAACCGCGCAAAATCACCCAGGGCGCCGATCGGGCACCGGGCGTGCTGAAGATTGTTAAGGTATATCTGGCGGTTAAACGCCGTATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCG‑AAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACa                                                                                                                                                                                                                 <  2:382205/239‑1 (MQ=255)
                        cGAAGCGAAACCCCGCAAAATCCCCCAGGGCGGGCATCTGGCACCGGGGGGGCTGAAGATTGTTAAGGTATATCTGGCGGTTAAACGCCGTATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGAGCAACCCGATCG‑AAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACa                                                                                                                                                                                                                 <  2:492185/239‑1 (MQ=255)
                          aaGCGAAACGCCGCAAAATCACCCAGGGCGACGATCTGGCACCGGGCGTGCTGAAGATTGTTAAGGTATATCTGGCGGTTAAACGCCGTATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGGGTAATTTCTAAGATCAACCCGATCG‑AAGATATGCCTTACGTGGAAAACGGTACGCCGGTAAAAATCGCACTGAACCCGCTGGGCGTAcccgcccgcagaaacatc                                                                                                                                                                                                               >  2:1372493/1‑223 (MQ=255)
                          aaGCGAAACGCCGCAAAATCACCCAGGGCGACGATCTGGCACCGGGCGTGCTGAAGATTGTTAAGGTATATCTGGCGGTTAAACGCCGTATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGCGTAATTTCTAAGATCAACCCGATCG‑AAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCCGGCCGTACCGTCCCGTATGAACATc                                                                                                                                                                                                               >  1:670678/1‑239 (MQ=255)
                                 aCGCCGCAAAATCACCCAGGGCGACGATCTGGCACCGGGCGTGCTGAAGATTGTTAAGGTATATCTGGCGGTTAAACGCCGTATCCAGCCTGGTGACAAGATGGCAGGTGGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCG‑AAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACACCGTACTGTACAAGCTGGGCTGACCGCCCCGAATGAAAAGCGGtaaa                                                                                                                                                                                                         >  2:1228171/1‑235 (MQ=255)
                                               cccAGGGCGACGATCTGGCACCGGGCGTGCTGAAGATTGTTAAGGTATATCTGGCGGTTAAACGCCGTATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCG‑AAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCAc                                                                                                                                                                                          <  1:909674/239‑1 (MQ=255)
                                               cccAGGGCGACGATCTGGCACCGGGCGTGCTGAAGATTGTAAAGGTATATCGGGCGGTTAAACGCCGTATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCG‑AAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCAc                                                                                                                                                                                          <  1:1254532/239‑1 (MQ=255)
                                                cgaGGGCGACTATCTGGCACCGGGCGTGCTGAAGATTGTTAAGGTATATCTGGCGGTTAAACGCCGTATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCG‑AAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCAc                                                                                                                                                                                          <  1:1107680/236‑1 (MQ=255)
                                                         cgttttGGCCCCGGGCGTGCTGGAGATTGTTAATGTATCTGTGGGGGTTAAACGCCGTATCCAGCCTGGTGACAAGATTGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCG‑AAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATgg                                                                                                                                                                                <  2:1333552/234‑1 (MQ=255)
                                                          catttGGCCCCGGGCGGGCTTAAGATTGTAAAGGTATAACTGGCGGTTAAACGCCGTATCCAACCGTGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCG‑AAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATgg                                                                                                                                                                                <  2:128986/234‑1 (MQ=255)
                                                                      ggCGTGCTGAAGATTGTTAAGGTATATCTGGCGGTTAAACGCCGTATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGAAACAAGGGTGTAATTTCTAAGATCAACCCGATCG‑AAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCGGCGAAAGATa                                                                                                                                                                    >  1:1055981/1‑238 (MQ=255)
                                                                           gCTGAAGATTGTTAAGGTATATCTGGCGGTTAAACGCCGTATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAAAAAGGGTGTAATTTCTAAGCTCAACCCGATCG‑AAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGACACAACTTGGCGTCACGCCCCGTCTGAACATCCGCAAGATCCCCCAACCCCCCCTGGGAATGGGCGCTAAAGGGATCGGc                                                                                                                                                               >  2:1046100/1‑238 (MQ=255)
                                                                               aaGATTGTTAAGGTATATCTGGCGGTTAAACGCCGTATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCG‑AAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATAGGGCAGATCCTCGAAACCCCCCCGGGTCTGGCTGCGACAgggcaggggggcac                                                                                                                                                          >  2:898936/1‑227 (MQ=255)
                                                                                     gTTAAGGTATATCTGGCGGTTAAACGCCGTATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCG‑AAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCCCCTGGGGATGGCTGCGAAAAGAATCGGCgcaaaaaacaa                                                                                                                                                    >  2:131429/1‑229 (MQ=255)
                                                                                      ttAAGGTATATCTGGCGGTTAAACGCCGTATCCAGCCTGGTGACACAATGGCAGGTCGTCACGGACAACAGGGAGTAATTTCTAAGATCAACCCGATCG‑CAGATATGCCTTACGATGAAAACGGTACACCGGTAGACATCGTACTGAACCAGCTCGGCGTACCGTCTCGTATTCACATCGGTCAGATCCTCGAAACCCACCTCGGTAGTGCATCGAAAAGTATAgggcccacaaaacaa                                                                                                                                                   >  2:245048/1‑226 (MQ=255)
                                                                                       tAAGGTATATCGGGCGGTTAAACGCCGTATCCTGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCG‑AAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACg                                                                                                                                                  <  1:543850/239‑1 (MQ=255)
                                                                                         aGGTATATCTGGCGGTTAAACGCCGTATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCG‑AAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGACAGGTATCGGCGACAAGATCAACGcc                                                                                                                                                >  1:1036005/1‑239 (MQ=255)
                                                                                                ttgggCGGTTAAACCCCGTTCCCAGCCTGGTGACAAGATGGCAGGTCGTCAAGGTAACAAGGGTGTAATTTCTAAGGTCAACCCGATCG‑AAGATAGGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGa                                                                                                                                         <  2:864189/236‑1 (MQ=255)
                                                                                                  tgggggttttactgcggtgtctgCCTGGTGACCAGATGGGTGGTTGTCGCGGTAACAATGGTTTAAATGCTAAGACGAAGCCGACTG‑AAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGGACCGGCTCGTATGAACATCGGTCAGATCCTCGAAACCCTCCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGaaa                                                                                                                                       <  2:439236/217‑1 (MQ=255)
                                                                                                  tGGCGGTTAAACGCCGTTTCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCG‑AAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGaaa                                                                                                                                       <  2:619887/239‑1 (MQ=255)
                                                                                                     cGGTTAAACGCCGTATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCG‑AAGATATGCCTTACGCTGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGCAACCCACCTGGGTATGGCTGGGCAAGGCATCGGGCACAAGAACAAACCCATACTGaaaaca                                                                                                                                    >  2:407801/1‑236 (MQ=255)
                                                                                                     cGGTTAAACGCCGTATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCG‑AAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGGATCGGCGACAAGATCAACGCCATGCTGaaaaa                                                                                                                                     >  1:702477/1‑236 (MQ=255)
                                                                                                     cGGTAAAACGCCGTTTCCTGCCGGGTGAAAAGATGGCAGGTCGTCACGGGAACAAGGGTGTAATTTCTAAGACACACCCGATCG‑AAGATATGCATGTCGATGAAAACGGTACGCCGGTAGACAGCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAAcag                                                                                                                                    <  2:78268/239‑1 (MQ=255)
                                                                                                      ggTTAAACGCCGTATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCG‑AAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTTCGAAAGGTATCGGCGGCAAGGTCAACGCCATGCTGAAAcagc                                                                                                                                   >  1:910616/1‑239 (MQ=255)
                                                                                                      ggTTAAACGCCGTATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCG‑AAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAAcag                                                                                                                                    <  1:131429/238‑1 (MQ=255)
                                                                                                             ccccGTTTCCAGCCTTGTGAAAAGATGGCAGGTCGTCACGGGAACAAGGGTGTAATTTCGAAGAGCAACCAGATCG‑AAGATATGCCTTACGATGAAAACGGGACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCaaga                                                                                                                            <  2:1036005/237‑1 (MQ=255)
                                                                                                             cGCCGTTTCCAGTCTGTTGACAAGATGGTAGGTCGTTACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCG‑AAGATATGCCTTACGATGAAAGCGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCaaga                                                                                                                            <  2:338987/239‑1 (MQ=255)
                                                                                                             cGCCGTATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCG‑AAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCaaga                                                                                                                            <  1:368365/239‑1 (MQ=255)
                                                                                                                  tATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCG‑AAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGGATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTc                                                                                                                        >  1:338987/1‑238 (MQ=255)
                                                                                                                   aTCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCG‑AAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTcg                                                                                                                       <  1:760141/238‑1 (MQ=255)
                                                                                                                        gCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCG‑AAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGAATGGCTGCGAAAGGGATTGGGGACAAGATCAACACCACCCCGAAAcacgcgacaaaaatcccgaaac                                                                                                                 >  2:784331/1‑219 (MQ=255)
                                                                                                                         ccTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCG‑AAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACAAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATAAACGCCATGCTGAAAAAGAACCAAGAAGGCGGGaa                                                                                                                   >  2:972823/1‑236 (MQ=255)
                                                                                                                           tgggtaCAAGATGGGAAGACGTAACGGTAACAAGGGTGGAATTTCTAAGATCAACCCGATCG‑AAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCT‑GGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTgcg                                                                                                             <  2:218201/234‑1 (MQ=255)
                                                                                                                            ggTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCG‑AAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTgcg                                                                                                             <  1:558664/239‑1 (MQ=255)
                                                                                                                             gTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGCTCG‑AAGATATGCCTTACGATGAAAACGGTACGCCGGTAGCCATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGTTCAGATCCTCGCAACCGACCTGGGAATGGCGCCGAAAGGACACGGCGACAAGATCAACGCCATCCTGAAAAAGCACCaagaagacaccaaaaccgcc                                                                                                            >  2:390972/1‑225 (MQ=255)
                                                                                                                              tGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCG‑AAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGcgcg                                                                                                           >  1:418294/1‑239 (MQ=255)
                                                                                                                               gACAAGATGGCAGGGCGTTACGGTAACAAGGGTGTAATTTCTAAGTACAACCCGATCG‑AAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGcgcg                                                                                                           <  2:300301/238‑1 (MQ=255)
                                                                                                                                aCAAGGTGGCAGGTCGTCCCTGTAAAAAGGGTGTAATTTCAAAGATCAACCCGTACGAAAGATA‑GCCTTACGATGAAAACGGTACGCCGGTAGTCATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGaa                                                                                                         <  2:1255743/239‑1 (MQ=255)
                                                                                                                                aCAAGATGGCAGGTCTGCCCGGGAACAAGGGTTTAATTTCTAAGAACAACCCGATCG‑AAAGTATGCCTTACGATGAAAACGGTACGCCGGTAGACCTCGTACTGAACCAGCTGGGCGTACCGGCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGaa                                                                                                         <  2:748944/239‑1 (MQ=255)
                                                                                                                                     aTGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCG‑AAGATATGCCTTACGATGGAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACAGCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGGATCGGGGTCAAGTTCAACGCCATGCCGAAACAGACGAAAGAAAGCGCGaaaaagaggggaatag                                                                                                     >  2:542687/1‑225 (MQ=255)
                                                                                                                                       ggCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCG‑AAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTAcc                                                                                                                                                                                                                               >  2:1287056/1‑114 (MQ=255)
                                                                                                                                           ggtctctaCGGTAACAAGGGTTTAATTTTTAAGACCAACCCGAGCG‑AAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACAGCGGACTGAACCAGCTGGGCGTACCGTCTCGTAGGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATCCAgcg                                                                                              <  2:418294/232‑1 (MQ=255)
                                                                                                                                           ggTCGGAACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCG‑AAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATCCAgcg                                                                                              <  1:276124/239‑1 (MQ=255)
                                                                                                                                           ggTCCTCCCGGTAACAAGGGTGTTATTTTCAAGATCAACCCGGTCG‑GAGATTGGCCTTACGATGAAAACCGTACCCCGGTAGACCTCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATCCAgcg                                                                                              <  2:1055981/239‑1 (MQ=255)
                                                                                                                                            gtcgtcACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCG‑AAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGGGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATGGGGGACACAGCCACACCCAGGTCGAAACACAAGACAGAAGCAGCAAAACTACGCGAAATCATCCAacgc                                                                                             >  2:341621/1‑238 (MQ=255)
                                                                                                                                                tcACGGTAAAAAGGGTGTAAATTTCAAGATCAAACGCGTCG‑AAGATATGCCGTACGATGAAAACGGTACGCCGGTAGGCTTCGGACTGAACCAGCCGGGCTGACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCCCCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATCCAgcgtgcgt                                                                                         <  2:508358/239‑1 (MQ=255)
                                                                                                                                                      tAACAAGGGTGTAATTTCTAAGATCAACCCGATCG‑AAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACACCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATCCAGCGTGCGTACGAt                                                                                    <  1:1330608/238‑1 (MQ=255)
                                                                                                                                                              gtgtAATTTCTAAGATCAACCCGATCG‑AAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATCCAGCGTGCGTACGATCTGGgc                                                                              >  1:377024/1‑236 (MQ=255)
                                                                                                                                                              gtgtAATTTCTAAGATCAACCCGATCG‑AAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGAATCGGCGCCAAGATCAACGCCCTGCTGAAACAGGAGCAAAAAGGCGCGAAACCCCGCGAAATCAACAACAGGGCGGAAGATCTGGgcgcc                                                                           >  2:733640/1‑238 (MQ=255)
                                                                                                                                                               tgtAATTTCTAAGATCAACCCGATCG‑AAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGtc                                                                                                                                                                                                                            <  2:1251123/93‑1 (MQ=255)
                                                                                                                                                                gtAATTTCTAAGATCAACCCGATCG‑AAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACTCCCTGCTGAAACAGCTGCAAGAAACCGCGAAAATGAGCCAATTCATCCAGCTAGCGAGCGATCTAGGCGCTg                                                                          >  2:783922/1‑238 (MQ=255)
                                                                                                                                                                gtAATTTCTAAGATCAACCCGATCG‑AAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCCGCGACAAGATCAACGCCATGCTGAGACAGCCGCAAGAAATCGCGAAACTGCCCGAATTCATCCACCGGTCGCACGATCTGGgcgagaa                                                                         >  2:254990/1‑235 (MQ=255)
                                                                                                                                                                   aTTTCTAAGGTCAACCCGATCG‑AAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATCCAGCGTGCGTACGATCTGGGCGCTGACGt                                                                      <  1:1220079/239‑1 (MQ=255)
                                                                                                                                                                       cTAAGATCAACCCGATCG‑AAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATc                                                                                                   >  1:123075/1‑206 (MQ=255)
                                                                                                                                                                       cTAAGATCAACCCGATCG‑AAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATc                                                                                                   <  2:123075/206‑1 (MQ=255)
                                                                                                                                                                       cTAAGATCAACCCGATCG‑AAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATCCAGCGTGCGTACGATCTGGGCCCGGACGTTCg                                                                   >  1:967391/1‑238 (MQ=255)
                                                                                                                                                                         aaGATCAACCCGATCG‑AAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGGACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATCCAGCGTGCGTACGATCTGGGCGCTGACGTTCGTCa                                                                <  2:377024/239‑1 (MQ=255)
                                                                                                                                                                               aaCCCGATCG‑AAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCCACGCCATGCTGAAACCGCAGCAAGAAGTGCCGAACCCGCGGCAATTCACCCATGCAGCGAACGATCCGGGCGCTTAAGTTCGACAGaaacg                                                          >  2:485165/1‑237 (MQ=255)
                                                                                                                                                                               aaCCCGATCG‑AAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGGATCCGCGACAAGATCAACGCCATGCTGAAACAGCAGAAAGAAGTCGCGAAACGGCGCGAATTCATCCAGCGGGCGTACGATCTGGGCGCGGACGTTCGTCGAAAAGt                                                          >  1:764293/1‑239 (MQ=255)
                                                                                                                                                                                aCCCGATCG‑AAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGGGAAACTGCGCGAATTCATCCAGCGTCCGTACGATCTGGGCGCTGCCGTTCGTCAGAAAGtt                                                         >  1:844629/1‑239 (MQ=255)
                                                                                                                                                                                aCCCGATCG‑AAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATCCAGCGTGCGTACGATCTGGGCGCTGACGTTCGTCAGAAAGtt                                                         <  1:314917/239‑1 (MQ=255)
                                                                                                                                                                                   cGATCG‑AAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTATCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATCCAGCGTGCGTACGATCTGGGCGCTGACGTTCGTCAGAAAGTTGAc                                                      <  1:656755/239‑1 (MQ=255)
                                                                                                                                                                                   cGATCG‑AAGATAAGCCAGACGATGAAAACGGTACGCCGGTAGCCATCGTACTGAACCAGCTCGGCGTACCGTCTCGTATGAACATCGGTCAGCTCCTCGAATCCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATCCAGCGTGCGTACGATCTGGGCGCTGACGTTCGTCAGAAAGTTGAc                                                      <  1:485165/239‑1 (MQ=255)
                                                                                                                                                                                    gATCG‑AAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATCCAGCGTGCGTACGATCTGGGCGCTGACGTTCGTCAGAAAGTTGAcc                                                     <  1:1228171/239‑1 (MQ=255)
                                                                                                                                                                                      tCG‑AAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTTCGCGAATTCATCCAGCGTGCGTACGATCTGGGCGCTGACGTTCGTCAGAAAGTTGACCTg                                                   >  1:269375/1‑239 (MQ=255)
                                                                                                                                                                                      tCG‑AAGATAGGCCTTCCGATGAAACCGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATCCAGCGTGCGTACGATCTGGGCGCTGACGTTCGTCAGAAAGTTGACCTg                                                   <  2:1099534/239‑1 (MQ=255)
                                                                                                                                                                                             atatGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATCCAGCGTGCGTACGATCTGGGCGCGGACGTTCGTCAGAAAGTTGACCTGAGTa                                               >  1:12096/1‑237 (MQ=255)
                                                                                                                                                                                                tGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATCCAGCGTGCGTACGATCTGGGCGCTGACGTTCGTCAGAAAGTTGACCTGAGTACCtt                                           >  1:970487/1‑238 (MQ=255)
                                                                                                                                                                                                 gCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAACATCAACGCCATGCTGAAACAGCAGCAAGAAGACGCGAAACTGCGCGAATTCATCCAGCGTGCGTACGATCTGGGCGCGGACGTTCGTCAGAAAGTTGACCGGAGTACCTTCa                                         >  2:1181133/1‑239 (MQ=255)
                                                                                                                                                                                                     tACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACTGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATCCAGCGTGCGTACGATCTGGGCGCTGACGTTCGTCAGAAAGTTGACCTGAGTACCTTCAGCgg                                     >  1:1125959/1‑238 (MQ=255)
                                                                                                                                                                                                     tACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCaaga                                                                                                                            >  1:1354342/1‑152 (MQ=255)
                                                                                                                                                                                                     tACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCaaga                                                                                                                            <  2:1354342/152‑1 (MQ=255)
                                                                                                                                                                                                      aCGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAACATGCACGAATTAATCCACCGTGCGGACGATCTGGGGGCTGCCGTTCGTCAGAAAGTTGACCTgggaaactacaggagg                                    >  2:1117105/1‑224 (MQ=255)
                                                                                                                                                                                                          tGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATCCAGCGTGCGTACGATCTGGGCGCTGACGTTCGTCAGAAAGTTGACCTGAGTACCTTCAGCGATgaag                                <  1:266586/239‑1 (MQ=255)
                                                                                                                                                                                                          tGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATCCAGCGTGCGTACGATCTGGGCGCTGACGTTCGTCAGAAAGTTGACCTGAGTACCTTCAGCGATgaag                                <  1:407801/239‑1 (MQ=255)
                                                                                                                                                                                                            aaaaCGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCACGAAGTCGCGAAACTGCGCGAATTCATCCAGCGTGCGTACGATCTGGGCGCTGACGTCCGTCAGAAAGTTGACCTTGGTACCTTCAGCGTTgaggaa                              >  1:1374573/1‑239 (MQ=255)
                                                                                                                                                                                                              aaCGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATCCAgcgtgcg                                                                                          <  1:327898/177‑1 (MQ=255)
                                                                                                                                                                                                                      gCCGGTAGGCAGCGTACGGAACCCGCTGGGCGGACCGGCTGGTATGAACATCGGGCAGATCCGCGAAACCCACCTGGGTATGGATGCGAAAGGTATCGGCGACAAGATCAACGCCATGGTGAAACAGCAGCAAGAAGTCGCGAAACGGCGCGAATTCATCCAGCGTGCGTACGATCTGGGCGCTGACGTTCGTCAGAAAGTTGACCTGAGTACCTTCAGCGATGAAGAAGTTATGCGTc                    <  2:698443/239‑1 (MQ=255)
                                                                                                                                                                                                                        cGGTAGGCCTCTTACCGAACCAACTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATCCAGCGTGCGTACGATCTGGGCGCTGACGTTCGTCAGAAAGTTGACCTGAGTACCTTCAGCGATGAAGAAGTTATGCGTCt                   <  1:354355/238‑1 (MQ=255)
                                                                                                                                                                                                                        cGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATCCAGCGTGCGTACGATCTGGGCGCTGACGTTCGTCAGAAAGTTGACCTGAGTACCTTCAg                                        <  1:1076995/217‑1 (MQ=255)
                                                                                                                                                                                                                                 tCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATCCAGCGTGCGTACGATCTGGGCGCTGACGTTCGTCAGAAAGTTGACCTGAGTACCTTCAGCGATGAAGAAGTTATGCGTCTGGCTGAAAAc         <  1:125930/239‑1 (MQ=255)
                                                                                                                                                                                                                                 tCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATCCAGCGTGCGTACGATCTGGGCGCTGACGTTCGTCAGAAAGTTGACCTGAGTACCTTCAGCGATGAAGAAGTTATGCGTCTGGCTGAAAAc         <  1:996147/239‑1 (MQ=255)
                                                                                                                                                                                                                                  cGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATCCAGCGTGCGTACGATCTGGGCGCTGACGTTCGTCAGAAAGTTGACCTGAGTACCTTCAGCGATGCAGAAGTTATGCGTCTGGCTGaaaa          >  1:1292191/1‑237 (MQ=255)
                                                                                                                                                                                                                                  cGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATCCAGCGTGCGTACGATCTGGGCGCTGACGTTCGTCAGAAAGTTGACCTGAGTACCTTCAGCGATGAAGAAGTTATTCGTCTGGCTGaaaa          >  1:807972/1‑237 (MQ=255)
                                                                                                                                                                                                                                  cGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATCCAGCGTGCGTACGACCTGGGGCCTGACGTTCGGCAGAAAGTTGACCCGAGGACCATCAGGCATGGAGAAGTAAAGCGTCGGGGGGAAAAcc        >  2:333197/1‑239 (MQ=255)
                                                                                                                                                                                                                                    tACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGAc                                                                                                                                                            <  1:613256/89‑1 (MQ=255)
                                                                                                                                                                                                                                    tACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGAc                                                                                                                                                            >  2:613256/1‑89 (MQ=255)
                                                                                                                                                                                                                                    tACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATCAATCCAGCGTGCGTACGATCTGGGCGCTGACGTTCGTCAGAAAGTTGACCTGAGGACCTTCAGCGCTGAAGAAGTTATGCGTCTGCCTGCAAACCt       >  1:1305232/1‑238 (MQ=255)
                                                                                                                                                                                                                                       tGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATCCAGCGTGCGTACGATCTGGGCGCTGACGTTCGTCAGAAAGTTGACCTGAGTACCTTCAGCGATGAAGAAGTTATGCGTCTGGCTGAAAACCTgcgc   <  1:1372493/239‑1 (MQ=255)
                                                                                                                                                                                                                                       tGAACCAGATGGGCGTCCCGTCCCGTGTGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATCCAGCGTGCGTACGATCTGGGCGCTGACGTTCGTCAGAAAGTTGACCTGAGTACCTTCAGCGATGAAGAAGTTATGCGTCTGGCTGAAAACCTgcgc   <  1:1027467/239‑1 (MQ=255)
                                                                                                                                                                                                                                         aaCCAGCTGGGCGTATCGTCTCGTAATAACATCGGTCAGACCCGCGAAACCCACCTGGGTATGGCTGAGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATCCAGCGTGCGTACGATCTGGGCGCTGACGTTCGTCAGAAAGTTGACCTGAGTACCTTCAGCGATGAAGAAGTTATGCGTCTGGCTGAAAACCTGCGCa  <  1:1130663/238‑1 (MQ=255)
                                                                                                                                                                                                                                             |                                                                                                                                                                                                                                         
GAAACACGAGTTCGAGAAGAAACTCGAAGCGAAACGCCGCAAAATCACCCAGGGCGACGATCTGGCACCGGGCGTGCTGAAGATTGTTAAGGTATATCTGGCGGTTAAACGCCGTATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCG‑AAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCCGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATCCAGCGTGCGTACGATCTGGGCGCTGACGTTCGTCAGAAAGTTGACCTGAGTACCTTCAGCGATGAAGAAGTTATGCGTCTGGCTGAAAACCTGCGCA  >  NC_000913/4184306‑4184775

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A