Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F9 I0 R1
|
71 |
67.1 |
1514203 |
90.7% |
1373382 |
220.3 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
4,184,542 |
C→A |
100% |
P1100Q (CCG→CAG) |
rpoB → |
RNA polymerase, beta subunit |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,184,542 | 0 | C | A | 100.0%
| 284.9
/ NA
| 87 | P1100Q (CCG→CAG) | rpoB | RNA polymerase, beta subunit |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base A (50/37); total (50/37) |
| Rejected as polymorphism: Frequency below/above cutoff threshold. |
| Rejected as polymorphism: Variant not supported by required number of reads on each strand. |
TTCGAGAAGAAACTCGAAGCGAAACGCCGCAAAATCACCCAGGGCGACGATCTGGCACCGGGCGTGCTGAAGATTGTTAAGGTATATCTGGCGGTTAAACGCCGTATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCCGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCC‑ATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATCCAGCGTGCGTACGATCTGGGCGCTGACGTTCGTCAGAAAGTTGACCTGAGTACCTTCAGCGATGAAGAAGTTATGCGTCTGGCTGAAA > NC_000913/4184316‑4184766
|
tgcGAGAATAAACTCGAAGCGAAACGACGAAAAATCACCTAGGGCGACTATCTGGCACCGGGCGTGCTGAAGATTGTTAAGGTATATCTGGCGGTTAAACGCCGTATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGc < 1:542907/227‑1 (MQ=255)
cGAGAAGAAACTCGAAGCGAAACGCCGCAAAATCACCCAGGGCGACGATCTGGCACCGGGCGTGCTGAAGATTGTTAAGGTATATCTGGCGGTTAAACGCCGTATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTCATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGAGGAAAACGGTACGCCGGAAGAAAACGTAATAAACCAGCt > 2:264500/1‑228 (MQ=255)
agaaACGCGAAGCGGAACGGCGGAAAAGCACCCAGGGCGACGATCTGGCACCGGGCGTAGTGAATATTGTTAAGGTATATCTGGCGGTTAAACGCCGTATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGt < 1:425139/229‑1 (MQ=255)
cgcGAAGCGATGCGCCTCAAAATCACCCAGGGCGCCGATCGGGCACCGGGCGTGCTGAAGATTGTCAAGGTATATCTGGCGGTTAAACGACGTATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTGCTAAGATCCACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGt < 1:258795/227‑1 (MQ=255)
cTCGAAGGTAAACGCCGGAAAATCCCCTAGTGCTGCGATCTGGCCCCGGGCGTGCTGAAGATTGTTAAGGTATATCTGGCGGTTAAACGCCGTATACAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTGCTAAGATGAACCCGATCGAAGATCAGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGt < 1:498560/229‑1 (MQ=255)
aaCGGCGAAAAAACACCCAGGGCGACGATCCGGCCCCGGGCGTGGTGAAGATTGGTAAGGTATATCTGGCGGTTAAACGCCGTATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGaa < 1:285597/229‑1 (MQ=255)
aCGCCGCAAAATCACCCAGGGCGACGATCTGGCACCGGGCGTGCTGAAGATTGTTAAGGTATATCTGGCGGTTAAACGCCGGATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCACCTGGGGGTACCGCCCCGTATGac > 1:206335/1‑227 (MQ=255)
cgccgcAAAATCCCCCAGGGCGACGAGCTGGCACCGGGCGTGCTTAAGATTGTTAAGGTATATCTGGCGGTTAAACGCCGTATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACa < 1:388620/229‑1 (MQ=255)
agcggcAAAAGCCCCCAGGGGGCCGATCTGGCACTGGGCTTGCGGAAGTTTGTTAAGGGATATCTGGTGGTTAAACGCCGTATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACa < 2:135201/225‑1 (MQ=255)
aTCACCCGGGGCGACGATTTGGGACCGGGGGTGCTGAGGATTGTTAAGGTATATCTGGCGGTTAAACGCCGTTTCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGa < 2:85163/229‑1 (MQ=255)
aTCACCCAGGGCGACGATCGGGCACCGGGCGTGCTGAAGATTGGTAAGGTATAGCTGGCGGTTAAACGCCGTATCCAGCCTGGTGACAAGAGGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGa < 1:189709/229‑1 (MQ=255)
cccAGGGCGACGATTTGGCCCCGGGCGTGCCGAAGATTGTTAAGGTATATCTGGCGGTTAAACGCCGTATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCt < 2:219953/229‑1 (MQ=255)
ggCGACGAGCTGGCACCGGGCGTGCTGAAGATTGTTAAGGTATATCTGGCGGTTAAACGCCGTATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTCCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGaaa < 1:524981/229‑1 (MQ=255)
cgagggtCTGGCCCCGGGCGTGATGAAGATTGGTAAGGTATATTGGGCGGTTAAACGCCGGATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAAcc < 2:213761/223‑1 (MQ=255)
cgaTCTGGCACCGGGCGTGCTGAAGATTGTTAAGGTATATCTGGCGGTTAAACGCCGTATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCTGATGAACATCGGTCAGATCCTCGaacacca > 1:247626/1‑223 (MQ=255)
cgaTCTGGCACCGGGCGTGCTGAAGATTGTTAAGGTATATCGGGCGGTTAAACGCCGTATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCAc < 1:162181/229‑1 (MQ=255)
ggCGTGCTGAAGATTGTTAAGGTATATCTGGCGGTTAAACGCCGTATCCAGCCTGGTGACAAGCTGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATACGCCTTACGATGACAACGGTACGCCGGTAGACATCGTACTGAACCAACTGGGCGTACCGCCTCGTATGACAACCGGCCAGATCCCCGAAACCCCCCTGGGGATGGccg > 2:399387/1‑227 (MQ=255)
ggCGTGCTGAAGATTGTTAAGGTATATCTGGCGGTTAAACGCCGTATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTTGGCGTACCGTCTCGTATGAACGTCGGTCAGATCCTCGAAACCCACCTGGGTTTGGCt > 1:29845/1‑228 (MQ=255)
ggCGTGCTGAAGATTGTTAAGGTATATCTGGCGGTTAAACGCCGTATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCCCCTGGGGATGGCt > 1:386214/1‑228 (MQ=255)
ggCGTGCTGAAGATTGTTAAGGTATATCTGGCGGTTAAACGCCGTATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGAGGAAAACGGTACGCCGGTAGACATCCTACTGAACCAGCAGGGCGTACCGTCCCTGATGAAAAACGGCCAAAACCTCGAAACCCACCTGGGGATGGcgg > 2:659732/1‑227 (MQ=255)
ggCGTGCTGAAGATTGTTAAGGTATATCTGGCGGTTAAACGCCGTATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGGGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGGACTGAACCAGCTGGGCGTACCGTCTCGCATGAACATCGGTCAGATCCCCGAAACCCACCTGGGTACGGcg > 1:297354/1‑227 (MQ=255)
tGTTAAGGTATATCTGGCGGTTAAACGCCGTATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGAACCGTCCCGTATGAACATCGGTCAAATCCTCGAAACCCCCCTGGGCATGGCTGCGAAAGGGATccga > 2:683078/1‑226 (MQ=255)
gTTAAGGTATATCTGGCGGTTAAACGCCGTATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGGATGAACACCGGTAAGATCCTCGACACCCACCTGGGGATGGCTGCGAAAGGTACCGGc > 1:206962/1‑228 (MQ=255)
ttAAGGTATATCTGGCGGTTAAACGCCGTATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTAc > 2:472273/1‑162 (MQ=255)
ttAAGGTATATCTGGCGGTTAAACGCCGTATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTAc < 1:472273/162‑1 (MQ=255)
taaggtatgatgggccgatAAACGCCGTAACCAACCAGGGTACCAGAAGGACGGTAGTGAGGGTATAAAGGGTGTAATTTATAAAAGCAACCAGATCGAATAGAAGCCTTACCATGAAAAGGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTAGCTTCACGTATGAACATCGGTCAGATCCACGAAACCCACCGGGGTATGGCTGCGAAAGGTATCGGCGaa < 2:100934/211‑2 (MQ=255)
atatTTGGCGGTTAAACGCCGTATGCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGAt < 2:312908/228‑1 (MQ=255)
tatCTGGCGGTTAAACGCCGTATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGGACATCGGTCAGATACTCCGAACCCACCTGGGAATGGCTGCGAAAGGTATTGGCGACCAGaaaa > 2:749348/1‑226 (MQ=255)
gggCGGTTAAACGCGGTTTCAGGGCTGGTGACAAGGTGGCAGGGGGTACCGGGAACAAGGGTGTAATTTCCAAGATCAACCCGATGGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGc < 2:245629/228‑1 (MQ=255)
gCGGTTAAACGCCGTATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTTTGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGGGAAAGGAATTGGGAACaaaacacaaccca > 2:478525/1‑218 (MQ=255)
gCGGTTAAACGCCGTATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACAGCCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAAGGATCGGCGCACACACCAACGCC‑a > 2:478553/1‑229 (MQ=255)
cGGTTAAACGCCGTATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGCCGACAAGATCAACGCC‑At > 1:496468/1‑229 (MQ=255)
cGGTTAAACGCCGTATCCAGCCTGGGGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGGGTACCGTCTCGAATGAACATCGGTCAGACTCTCGAAACCCACCTGGGGATGGCTGCGAAAAGGATCggggggcaaaacaaagacaa > 2:556594/1‑211 (MQ=255)
aaaCGCCGTATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGTAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCCCCTGGGCATGGCTGCGCAAGGGATCGGCGACAAGGTCAACGCC‑ATTCTGa > 1:394219/1‑229 (MQ=255)
aCGGCGTAGCCAGGCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTGTAAGATCAACCCGATCGAAGATATGCCCTACGAGGAAAACGGTACGGCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGTTATCGGCGACAAGATCAACGCC‑ATGCTGaaa < 1:2787/229‑1 (MQ=255)
aCGCCGTATCCAGGCTGGTGACAAGATGGTAGGGAGTCAAGGTAACAAGGGTGTAATTTCTAAGGTTAACCCGGTCGAAGATAGGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACAGCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCC‑ATGCTGaaa < 2:386214/229‑1 (MQ=255)
aCGCCGTATCCAGCCTGGTGACAAGAAGGCAGGTCGGCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCC‑ATGCTGaaa < 1:170859/229‑1 (MQ=255)
cgCCTGGTACAAAGATGGCGGGGCGGCACGGTAACTAGGGGTTAATTTCTAAGAACAACCCGATCGAAGATATGCCTTACGATGAAAACGGTGCGCCGGTAGGCATCGTACTGAACCATCTGGGCGTACCGTCTCGTATGAACATCGGTCAGAACCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCC‑ATGCTGAAACAGCAGCaaga < 2:397430/228‑1 (MQ=255)
ccTTGTGACAAGATGGCAGGTCGTCACGGAAACAAGGGTGTACTTTCTAAGTTCAACCCGATCAAAGATATGCCTTACGATGAAAACGGTATCACGGAAGACACCGCACTGAACCAGCTGGGCGTACCGTCGCGACGGAACCTCGGTCAAGTACTCGAAACCCACCCGGGTTTGCCTACGCAAGAGAACCGCGAAAACACCAAACCC‑ATGccataaacccagtgacaaa > 2:164912/1‑211 (MQ=255)
cTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGAGTGGCGGCGAAAGGAATCGGCGACAAGACAAAAGCC‑ACGCTGAAACAGCAGCaagaagg > 2:736071/1‑228 (MQ=255)
cTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGCTTGAACATCGGACAGATCTCCGAAACCCACCTGGGTATGCCTGCGAAAAGAATCAGCGACAAGATCAACACC‑ACGCCGaaaacgccacaaaaaa > 2:340281/1‑215 (MQ=255)
cTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGAACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGGATGGCTGCGAAAGGCACGGGCGACAAGATCAACGCC‑ATCCTAAAACAACAGCaaaaaaa > 2:688855/1‑227 (MQ=255)
gATGGCAGGTCGTCACGGTAACAAGGGTGTAAGTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCC‑ATGCTGAAACAGCAGCAAGAAGTCGCGaaa < 1:632760/226‑1 (MQ=255)
aTGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGGATCGGCGACAAGATCAACGCC‑ATGCTGAAACAGCAGCAAGAAGTCGCGAAACTg > 1:64695/1‑228 (MQ=255)
tGGCAGGTCGTCCAGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCC‑ATGCTGAAACAGCAGCAAGAAGTCGCGAAACTgcg < 1:378234/229‑1 (MQ=255)
tGGCAGGTCGACGAGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCC‑ATGCTGAAACAGCAGCAAGAAGTCGCGAAACTgcg < 1:556595/229‑1 (MQ=255)
ggCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCCCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGCTATGGCTGCGAAAGGTATCCGCGACAAGATCAACCCCAATGTTGAACCA‑CAACAAAAAGGAGCGAAAccacgg > 2:300565/1‑224 (MQ=255)
ggTCGGTACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCC‑ATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGaa < 1:153456/228‑1 (MQ=255)
gtcgtcACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGCCAAGATCAACGCC‑ATGCTGAAACAGCAGCAAGAAGTGGCGAAACTGCGCGAAtt > 1:271355/1‑229 (MQ=255)
gtcgtcACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCC‑ATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGGGAAtt > 1:34401/1‑229 (MQ=255)
cACGGTAACAAGGGTGTAATTTCCAAGAGCAACCCGATCGAAGATATGCATTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCC‑ATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATcc < 2:642462/229‑1 (MQ=255)
aCGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGCCAAGATCAACGCC‑ATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGAGCGAATTCATCCa > 1:161638/1‑229 (MQ=255)
aaCAAGGGTTTAATTTCTAAGATCAAGCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCC‑ATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATCCAgcg < 1:419892/227‑1 (MQ=255)
cAAGGGTTAAATTTCAAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTGCGCCGGTAGACATCGTACTGAACCAACTGGGCGTACCGTCTCGTATGAACATTGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCC‑ATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATCCAgcgtgcg < 2:554745/229‑1 (MQ=255)
cAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAAAATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCC‑ATGCTGAAACAGCAGCAAGAAGACGCGGAACTGCGCGCATTCATCCAgcgtgcg > 1:399053/1‑229 (MQ=255)
gtgtAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACACC‑ATGCTGAAACAGCAGCAAGGAGTCGCGAAAACGCACGAAATCATCCAGGGAGCGAAcaa > 2:247470/1‑227 (MQ=255)
gtAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCC‑ATGCTGAAACAGCAGCAAGAAGTGGCGAAAATGCGCGCATTCATCCAGCGTGGTTACGaa > 1:628338/1‑227 (MQ=255)
gtAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCC‑ATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATCCATCGTGGGTACGATc > 1:521303/1‑229 (MQ=255)
gtAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCC‑AAGCTGAAACAGCAACAAGAAGTCGCGAAACTGCCGCAATTCATCCAacgtcgggagaaac > 2:91959/1‑219 (MQ=255)
tAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCC‑ATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATCCAGCGTGCGTACGATc < 1:399387/228‑1 (MQ=255)
tttCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCC‑ATGCTGAAACAGCAGAAAGAAGTCCCGAAACTGCGCGAATTAATCCAGCGGGCGCACGATCTgg > 1:412911/1‑228 (MQ=255)
tCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCC‑ATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATCCAGCGTGCGTACGATCTgggg > 1:207919/1‑227 (MQ=255)
aaGATCAACCCGAACGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTCCCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCC‑ATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGaa < 1:417858/198‑1 (MQ=255)
cggatgaaaattagCCTTAAGAGGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTTCCGTCGCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCC‑ATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATCCAGCGTGCGTACGATCTGGGCGCTGACGTTCGTCa < 2:64695/216‑1 (MQ=255)
gCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCC‑ATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATCCAGCGTGCGTACGATCTGGGCGCTGACGTTCGTCAGTAAGTTGACCTg > 1:618354/1‑229 (MQ=255)
ttACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCC‑ATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATCAAGCGCGCGAACGATCTGGGCGCTGACGTTCGTCAGAAAGGTGACCTgtgt > 1:704371/1‑229 (MQ=255)
ttACGATGAAAACGGTACGACCGTAAAGTGCTGCATGACACAGCTGGGCGACCCGGTTCGTATGAACATCGATCAGTTCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCC‑ATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATCCAGCGTGCGTACGATCTGGGCGCTCACGTTCGTCCGAAAGTGGTCATGAGt < 2:394219/229‑1 (MQ=255)
tACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGGATCGGCGACAAGATCAACGCC‑ATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATCCAGCGTGCGTACGATCTGGGCGCTGACGTTCGTCAGAAAGTCGACCTGAgca > 1:684644/1‑227 (MQ=255)
cGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGCCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGCTCAACGCC‑ATGCTGAAACAGCAGCAAGAAGTCGCGCAACTGCGCGAATTCATCCAGCGTGCGTACGATCTGGGCGCTGACGTGCGTCCGAAAGTTCACCTggctaac > 1:146496/1‑223 (MQ=255)
cGATGAAAACGGCACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACCAGATCAACGCC‑ATGCTGAAACAGCAGCAAGAAGTCGCGAAACTCCGCGAATTCATCCCGCGTGCGTACGATCTGGGCGCTGACGTTCGTCAGAAAGTTTACCTGAGTAcc > 1:121972/1‑229 (MQ=255)
aaaccgtgaacacGGTAGACCTCGTACGGATCCAGCTGGGCGTACCGTGTCGTAGGAACATCCGTCAGATCACCGAAACCCACCAGGGTATGGCTGCGAAAGGTATCGGAGACAAGATCAACGCA‑ATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATCCAGCGTGCGTACGATCTGGGCGCTGACGTTCGTCAGAAAGTTGACCTGAGTACCTTCAg < 1:356045/217‑1 (MQ=255)
aaaaCGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGaaa > 1:670828/1‑78 (MQ=255)
aaaaCGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGaaa < 2:670827/78‑1 (MQ=255)
aaaaCGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATAAACGCC‑ATGCTGCAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATCCAGCGGCCGTACGACCTGGGCGCTGACGTTCGTCAGAAAGTTGACCTCAGTACCGTCAg > 1:266444/1‑229 (MQ=255)
aCGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGCAGACAAGATCAACGCC‑ATGCTGAAACAGCAGCCAGAAGTCGCGACACTGCGCGAATCAATCCAGCGTGCGTACGATCGGGGCGCTGACGTTCGCAAGCAAGTTGACCTGGGGACCTTAAgggc > 2:278171/1‑226 (MQ=255)
ggTACGCCGGTAGCCCTCGTACTTAACCAGCTTGGCGTACCGGCTCGTATGAACATCGGTCAGATCCCCGAAACCCACCTGGGTAGGGCTGCGAAAGGTATCGGCTACAAGATCAACGCC‑ATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATCCAGCGTGCGTACGATCTGGGCGCTGACGTTCGTCAGAAAGTTGACCTGAGTACCTTCAGCGATg < 2:161638/229‑1 (MQ=255)
gTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCC‑ATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATCCAGCGTGCGTACGATCTGGGCGCTGACGTTCGTCAGAAAGTTGACCTCGGTACCTCCACCGATgt > 1:527850/1‑228 (MQ=255)
aTCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTAACGGCGACAAGATCAACGCC‑ATGCTAAAACAGCAGCAAGAAGGACCGAAACTGCGCGAATTCCTCACGCGTGCGGACGCACTGGGCGCTGACGGTCGACGTGAAGGTGACCTGGGTACCTTCAGCGGTGAGAACGTTAtcctt > 2:445244/1‑224 (MQ=255)
cGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGAc < 1:504804/91‑1 (MQ=255)
cGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCC‑ATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATCCAGCGTGCGTACGAGCTGGGCGCTGCCGTCAGTCAGAAAGTTGACCTGAGGACCTTCAGCGTGGAAGAAGTTATCGGTCt > 1:678810/1‑228 (MQ=255)
cGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGAGAAAGGTATCGGCGAc > 2:504804/1‑91 (MQ=255)
tACTGCACCAGCTGTGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCC‑ATGCTGAAACAGCAGCAAAAAGTCGCGAAACTGCGCGAATTCATCCAGCGTGCGTACGATCTGGCCGCTGACGTTCGCCAGAAAGTTGACCTGAGTACCTTCATCCATGAAGAAGTTATTCGACTgt > 1:197730/1‑227 (MQ=255)
cTGAACCAGGCGGGCGGTCCGTTGTGTATAAACATCGGTCAGATCCCCGAAACCCGCCTGGGTATTGCTGACAAAGGTATCGGCGACAAGAACAACGCC‑ATGCCGAAACAGCAGCAAGAAGGCGCGAAACTGCGCGAATTCATCCAGCGTGCGTACGATCTGGGCGCTGACGTTCGTCAGAAAGTTGACCTGAGTACCTTCAGCGATGAAGAAGTTATGCGTCTGGCTg < 2:115211/229‑1 (MQ=255)
aaCCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACACGATCAACGCC‑ATCCTGAACCAGCAGCAAGAAGTCGCGAAACTGCGCGACCTCATCCAGCGTGCGTACGATCTGGGCGCTGCCGTTCGTCAGTAAGTTGCCCTGAGTACCTTCTGCGATGCAGAAGTTATGCGTCTGGCTGaaa > 1:437034/1‑229 (MQ=255)
aaCCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCACAGCC‑ATGCTGAAACAGCGGCAAGAAGTCGCGAAACTGCGCGAATTCCTCCAGCGTGAGTACGACCGGGGCGCGGACGTTCGTCATAAAGTTGGCCTGCGTACCTTCAGCGATGAAGACGTTATGGGTCTGGCTGaaa > 2:156979/1‑229 (MQ=255)
aaCCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCC‑ATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATCCAGCGGGCGTACGAGCTGGACGCTGACGTTCGTCAGAAAGTTGCCCTGAGTACCTTCAGCGATGAGGAAGTTATGAGTCTGGCTGaaa > 1:690907/1‑229 (MQ=255)
aaCCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGAATCGGCGACAAGATCAACGCC‑ATGCTGAAACAGCAGCCAGAAGTCGCGAAACTGCGCGAATTCATCCAGCGTGCGTACGATATGGGGGCTGACGGTCGGCAGAAAGCTGACCTGAGTACCTTCAGCGTTGAAGCAGGTATGCGTCTGGCTGaaa > 1:384898/1‑229 (MQ=255)
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TTCGAGAAGAAACTCGAAGCGAAACGCCGCAAAATCACCCAGGGCGACGATCTGGCACCGGGCGTGCTGAAGATTGTTAAGGTATATCTGGCGGTTAAACGCCGTATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCCGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCC‑ATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATCCAGCGTGCGTACGATCTGGGCGCTGACGTTCGTCAGAAAGTTGACCTGAGTACCTTCAGCGATGAAGAAGTTATGCGTCTGGCTGAAA > NC_000913/4184316‑4184766
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
