Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F18 I0 R1 274 115.5 2655328 86.7% 2302169 226.6

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 4,184,542 C→A 100% P1100Q (CCG→CAG)  rpoB → RNA polymerase, beta subunit

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,184,5420CA100.0% 504.2 / ‑6.7 148P1100Q (CCG→CAG) rpoBRNA polymerase, beta subunit
Reads supporting (aligned to +/- strand):  ref base C (0/2);  new base A (80/65);  total (80/68)
Rejected as polymorphism: E-value score below prediction cutoff.
Rejected as polymorphism: Frequency below/above cutoff threshold.
Rejected as polymorphism: Variant not supported by required number of reads on each strand.

Only 100 of 148 total aligned reads displayed.

GAAACACGAGTTCGAGAAGAAACTCGAAGCGAAACGCCGCAAAATCACCCAGGGCGACGATCTGGCACCGGGCGTGCTGAAGATTGTTAAGGTATATCTGGCGGTTAAACGCCGTATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCCGCTGGGCGTACCGTCTCGTATGAACATCGGTCAG‑ATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATCCAGCGTGCGTACGATCTGGGCGCTGACGTTCGTCAGAAAGTTGACCTGAGTACCTTCAGCGATGAAGAAGTTATGCGTCTGGCTGAAAACCTGCGCAAA  >  NC_000913/4184306‑4184777
                                                                                                                                                                                                                                            |                                                                                                                                                                                                                                            
   acacGAGTTCGAGAAGAAACTCGAAGCGAAACGCCGCAAAATCACCCAGGGCGACGATCTGGCACCGGGCGTGCTGAAGATTGTTAAGGTATATCTGGCGGTTAAACGCCGTATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTgg                                                                                                                                                                                                                                         >  2:715397/1‑239 (MQ=255)
       gAGTTCGAGAAGAAACTCGAAGCGAAACGCCGCAAAATCACCCAGGGCGACGATCTGGCACCGGGCGTGCTGAAGATTGTTAAGGTATATCTGGCGGTTAAACGCCGTATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGt                                                                                                                                                                                                                                     <  2:1281681/239‑1 (MQ=255)
        ggtgctagaaaaAACTCGAGGCGAAACGCCGGCAAATGCACGAGGGTGGAGATCTGGCACCGTGCGTGCTGAAGATTGTTAAGGTATATCTGGCGGTTAAACGCCGTATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTa                                                                                                                                                                                                                                    <  1:473056/233‑1 (MQ=255)
            cgggaagaaACCTGAAGCGAAAAGTCGGAAAATCCCCCAGGGCGACGATCCGGCACCGGGCGTGCTGAAGATTGGTAAGGTATATCTGGCGGTTAAACGCCGTATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTGCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGt                                                                                                                                                                                                                                <  1:73070/236‑1 (MQ=255)
            cGAGAAGAAACTCGAAGCGAAACGCCGCAAAATCCCCCAGGGCGACGATCTGGCACCGGGCGTGCTGAAGATTGTTAAGGTATATCTGGCGGTTAAACGCCGTATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGt                                                                                                                                                                                                                                <  2:1313167/239‑1 (MQ=255)
                  gaaACTCGAAGCGAAACGCCGCAAAATCACCCAGGGCGACGATCTGGCACCGGGCGTGCTGAAGATTGTTAAGGTATATCTGGCGGTTAAACGCCGTATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACAAGCTGGGCGTACCGTCTCGTa                                                                                                                                                                                                                          >  2:1188383/1‑239 (MQ=255)
                     aCTCGAAGCGAAACGCCGCAAAATCACCCAGGGCGACGATCTGGCACCGGGCGTGCTGAAGATTGTTAAGGTATATCTGGCGGTTAAACGCCGTATCCAGCCTGGTGACAAGATGGCAGGACGTCACGGTAACAAGGGGGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGACGTACCGTCTCGTATGa                                                                                                                                                                                                                       >  2:90987/1‑239 (MQ=255)
                      cTCGAGGGGAAACGGCGCAAAGTCGCCCAGGGCGGCGTGCTGGCCCCGGGCGTCGTGAAGATTGTTAAGGTATGTCTGGCGGTTAAACGCCGTATCCAGCCTGGTGACACGATGGCAGGTCGGCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGaa                                                                                                                                                                                                                      <  1:773512/239‑1 (MQ=255)
                        ccaagggaaagcacggaaaaTCCCCCAGGGGCACGGTCGGGCACCGGGCCTGCTTAAGATTGTTAAGGTATATCTGGCGGGTAAACGCCGTATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACa                                                                                                                                                                                                                    <  1:1221451/223‑1 (MQ=255)
                         gAAGCAAAACGGCGAAAAATCACCCAGGGCGACGATCTGGCACCGGGCGTGCTGAAGATTGTTAAGGTATAGCTGGCGGTTAAACGCCGTATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACAt                                                                                                                                                                                                                   <  2:1260903/239‑1 (MQ=255)
                                          aaTCACCCAGGGCAACGATCTGGCACCGGGCGTGCTGAAGATTGTTAAGGTATATCTGGCGGTTAAACGCCGTATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAG‑ATCCTCGaaa                                                                                                                                                                                                 <  2:681375/239‑1 (MQ=255)
                                             cccccaggggcgaggtttgggcccGGGGGGGCTGGAGATTGGTAAGGTATATCGGACGGTTAAACGCCGTATCCAGCCTGGGGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAG‑ATCCTCGAAAccc                                                                                                                                                                                              <  1:114647/217‑1 (MQ=255)
                                               cccAGGGCGACGATCTGGCACCGGGCGTGCTGAAGATTGTTAAGGTATATCTGGCGGTTAAACGCCGTATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAG‑ATCCTCGAAACCCa                                                                                                                                                                                             >  2:391985/1‑238 (MQ=255)
                                               cccAGGGCGACGATCTGGCACCGGGCGTGCTGAAGATTGTTAAGGTATATCTGGCGGTTAAACGCCGTATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAG‑ATCCTCGAAACCCAc                                                                                                                                                                                            <  2:29512/239‑1 (MQ=255)
                                               cccAGGGCGACGATCTGGCACCGGGCGTGCTGAAGATTGTTAAGGTATATCTGGCGGTTAAACGCCGTATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAG‑ATCCTCGAAACCCAc                                                                                                                                                                                            <  1:154452/239‑1 (MQ=255)
                                               cccAGGGCGACGATCTGGCACCGGGCGTGCTGAAGATTGTTAAGGTATATCTGGCGGTTAAACGCCGTATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAG‑ATCCTCGAAACCCAc                                                                                                                                                                                            <  2:32735/239‑1 (MQ=255)
                                               cccAGGGCGACGATCTGGCACCGGGCGTGCTGAAGATTGTTAAGGTATATCTGGCGGTTAAACGCCGTATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACAAGCTGGGCTGACCGTTTCGTATGAAAATCGGTCAG‑ATCTTCGAAACCCa                                                                                                                                                                                             >  2:960569/1‑238 (MQ=255)
                                               cccAGGGCCACGATCTGGCACCGGGCGGGCTTAAGATTGTTAAGGTAGAGCTGGCGGTTAAACGCCGTAACCAGACTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAG‑ATCCTCGAAACCCAc                                                                                                                                                                                            <  2:327339/239‑1 (MQ=255)
                                                 aaGGGCGACGATCTGGCACAGGGCGGGGTGAAGATTGTTAAGGGTTATCTGGCGGTTAAACGGCGTATCCAGCCCGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACGGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAG‑ATCCTCGAAACCCCCCt                                                                                                                                                                                          <  2:818039/238‑1 (MQ=255)
                                                         cgaTCTGGCACCGGGCGTGCTGAAGATTGTTAAGGTATATCTGGCGGTTAAACGCCGTATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAG‑ATCCTCGAAACCCACCTGGGGATg                                                                                                                                                                                   >  2:448100/1‑238 (MQ=255)
                                                         cgaTCTGGCACCGGGCGTGCTGAAGATTGTTAAGGTATATCTGGCGGTTAAACGCCGTATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGGATGAACATCGGTCAG‑ATCCTCGAAACCCACCTGGGTATg                                                                                                                                                                                   >  2:77803/1‑238 (MQ=255)
                                                              tGGCACCGGGCGTGCTGAAGATTGTTAAGGTATATCTGGCGGTTAAACGCCGTATCCAGCCTGGTGACAAGATGGCAGGTCGCCACGGTAACAAGGGTGTAATTTCTAAGATCCACCCGATCGGAGATATGCCTTACGATGAAAACGGTAGCCCGGAAAGCATCGAACCGAACAACACGGGCGTACCGTCTCGGATGAACATCGG‑CAGAATACACAAAACCCACCCGGGTAGGGcggga                                                                                                                                                                             >  1:699090/1‑235 (MQ=255)
                                                                      ggCGTGCTGAAGATTGTTAAGGTATATCTGGCGGTTAAACGCCGTATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAG‑ATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGGAt                                                                                                                                                                     >  2:256915/1‑239 (MQ=255)
                                                                      ggCGTGCTGAAGATTGTTAAGGTATATCTGGCGGTTAAACGCCGTATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAG‑ATCCTCGAAACCAACCTGGGTATGGCTGCGAAAGGTa                                                                                                                                                                      >  2:1025107/1‑238 (MQ=255)
                                                                             ttaaGATTGTTAAGGTAAATCGGGCGGTTAAACGCCGTATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAG‑ATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGAc                                                                                                                                                              <  2:1142635/237‑1 (MQ=255)
                                                                             taaaGATTTGTAAGGTTTATGTGGCGGTTAAACGCCGTGGCCCGCTTGGTGTAAAGGTGGCAGGTCCTTCGTGTAACAAGGGTGTAATTTCTAAGAGCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACTAGCTGGGCGTATCGTCTCGTATGAACATCGGTCAG‑ATCCTCGCAACCCGCCTGGGTATGGCTGCGAAAGGTAGCGGCGAc                                                                                                                                                              <  1:168159/237‑1 (MQ=255)
                                                                             tGAAGGTTTGTAGGGTATATCTGGCGGGTAAAAGCCGGTTCCAGCCTGGTGACAAGGTGGCAGGTCGTGACGGTAACGAGGGTGTAATTTCTAAGATAAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAG‑ATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGAc                                                                                                                                                              <  1:1136184/239‑1 (MQ=255)
                                                                                              tatCTGGCGGTTAAACGCCGTATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAG‑ATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGGATCGGCGCAAAGATCAACGCCATg                                                                                                                                               >  2:1327039/1‑237 (MQ=255)
                                                                                              tatCTGGCGGTTAAACGCCGTATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGAGGTAAACGGTACGCCGGTAGACATCGGACTGAACCAGCTGGCGGGACCGTCTCGGTTGGACTACGGTCAG‑ATCCTCGAAACCCACCTGGGTATGGCCGCGGAAAGGATAGGGGGAAAGATCAACGCCacgag                                                                                                                                             >  1:303755/1‑235 (MQ=255)
                                                                                              tatCTGGCGGTTAAACGCCGTATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGAAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAAAGGTACGCCGGTAGACACCGAACTGAACCAGCTGGGCGGACCGTCTCGAATGAACATCGGTCAG‑TACCTCGAAACCCACCATGGTATGGCGTGGCAAGGAATCGCGGGAAAGAGCAACGCCAGGcg                                                                                                                                             >  1:518805/1‑238 (MQ=255)
                                                                                                     cGGTTAAACGCCGTATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTTAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGCCAG‑ATCCTCAAAACCACCCTGGGGATGGTTCGGAAAAGAATCGGCGaaaaaaaaaacccacagcgggaaaaa                                                                                                                                      >  1:551621/1‑217 (MQ=255)
                                                                                                     cGGTTAAACGCCGTATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAG‑ATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCCTGCTGAAAcag                                                                                                                                      >  2:883017/1‑239 (MQ=255)
                                                                                                     cGGTTAAACGCCGTATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAG‑ATCCTCGAAACCCACCCGGGAATGGCGGGGAAAGGGATCGGCGACAAACAAAAACCCATGCTGAAAaag                                                                                                                                      >  1:917493/1‑239 (MQ=255)
                                                                                                             cgcgcgttcccacgttgtaaaaaGATGGCAGGTCGTACAGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGAAACGCCCTACGATGAAAACGGTACGCCGGAAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAG‑ATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCaaga                                                                                                                              <  1:223162/218‑1 (MQ=255)
                                                                                                             cgccttgtcccagtcggTGAAAAGATGGCAGGTCGTCACGGTAAAAAGGGTTTAATTTCTAAGATCAACCCGATCGAAGATAGGCCTTACGATGAAAACGGTACGCCGGTAGACATCGGACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAG‑ATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCaaga                                                                                                                              <  1:346581/224‑1 (MQ=255)
                                                                                                                  tATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAG‑ATCCTCGAAACCACCCTGGGAATGGCTGCGAAAGGTGTCGGCGCAAAGATAAACACCAAGCTGAAAAAGAAGAaaaaagagg                                                                                                                         >  1:590678/1‑236 (MQ=255)
                                                                                                                      cagtcgtgTGAAAAGATGGCAGGTCGGCACGGTAAAAAGGTTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGGTGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAG‑ATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGaa                                                                                                                     <  1:1296885/232‑1 (MQ=255)
                                                                                                                         ccTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAG‑ATCCTCGAAACCCACCTGGGTATGGCTGCAAAAGGTATCGGCGACAAGCTCACCGCCATGCTGAAACAGCAGCACGAAGTCGCGaa                                                                                                                     >  2:572416/1‑236 (MQ=255)
                                                                                                                          cTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACCTCGGTCAG‑ATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAAcg                                                                                                                  >  2:526286/1‑237 (MQ=255)
                                                                                                                            ggttaaaaaaTGCCAGGGCGTCACGGTAACAAGGGTGTAATTTTTAAGGTCAACCCGATCGAAGATATGCCTTACGATGAAACCGGTACGCCGGTAGTCATCGGACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAG‑ATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTgcg                                                                                                               <  1:221428/230‑1 (MQ=255)
                                                                                                                            ggTGACAAGATGGCGGGTCGTCACGGTAACAAGGGGGTAATTTCTAAGAGAAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAG‑ATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTgcg                                                                                                               <  1:77803/239‑1 (MQ=255)
                                                                                                                            ggTGAAAAGGTGGGAGGTCGTCACGGTAACAAGGTTGTAATTTCTAAGATCAACCCGATCGAAGATTTGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTTAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAG‑ATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTgcg                                                                                                               <  1:111072/239‑1 (MQ=255)
                                                                                                                             gTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAG‑ATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGAATCGGCGCCAAGATCAACGCCATGCTGAAACAGCACCAAGAAGTCGCGAAACTgcgc                                                                                                              >  2:111072/1‑239 (MQ=255)
                                                                                                                             gTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAA‑ATCCCCGAAACCCACCTGGGTATGGCTGCGACAGGGATCGGCGACAAGATCGACGCCATGCTGAAACACCAGAAAGAAAACGCGAAAcagggc                                                                                                              >  1:838189/1‑234 (MQ=255)
                                                                                                                                aCAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAG‑ATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGaa                                                                                                           <  2:113831/239‑1 (MQ=255)
                                                                                                                                          aGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAG‑ATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATCCAg                                                                                                  <  2:590678/238‑1 (MQ=255)
                                                                                                                                          aGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAG‑ATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATCCAg                                                                                                  <  2:648181/238‑1 (MQ=255)
                                                                                                                                            gtcgtcACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAG‑ATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAATCGCGAAACTGCGCGAATTCATCCAgcgt                                                                                               >  2:1156349/1‑239 (MQ=255)
                                                                                                                                            gcgtttgcGGTAAGAAGGGTGTATTTTTTAAAGGAAAACCGGACGAAGATTTGTCTTACGATTAAAACGGTACGCCGGGAGACATGGTTCTGAATCAGCTGGGCGTACCGTCGCGGATGAACAGCGGTCAG‑AGCCTCGAAGCCTCCCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAATCTGCGCGAATTCATCCAgcg                                                                                                <  1:990062/231‑1 (MQ=255)
                                                                                                                                              cgtcACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAG‑ATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGCAACTGCGCGAATTCATCCAgcttgc                                                                                             >  2:1132574/1‑239 (MQ=255)
                                                                                                                                              cgtcACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAG‑ATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGGATCGGCGACAAAATCAACCCCATGCTGAAAAACAAGCAAGAAAACCCGAAACGGCGCGAATTCaacaaccgggg                                                                                             >  1:835338/1‑229 (MQ=255)
                                                                                                                                               gtcACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAG‑ATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATCCAgcgtgcg                                                                                            <  2:838189/239‑1 (MQ=255)
                                                                                                                                               gtcACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAG‑ATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATCCAgcgtgcg                                                                                            <  2:496056/239‑1 (MQ=255)
                                                                                                                                                      tAAAAAGGTTGTAATTTTTAAGATCAGCCCGATCGAAGGTTTGCCTTACGATAAAAACGGGACGCCGGTAAACAGCGTACGGAACCAGCTGGGCGTACCTGCTCGTATGAACATCGGACAG‑ATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATCCAGCGTGCGTACGAt                                                                                      <  1:619075/238‑1 (MQ=255)
                                                                                                                                                        aCAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAG‑ATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATCCAGCGTGCGTACGATCTg                                                                                   <  2:551621/239‑1 (MQ=255)
                                                                                                                                                              gtgtAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAG‑ATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATCCAGCGTGCGTAc                                                                                         <  2:1020595/227‑1 (MQ=255)
                                                                                                                                                              gtgtAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGCCAG‑ATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCTACACGATCAACCCCCTGCTGAAACAGCAGCAAAAAGTCGCGAAACGGCGCGAATTCACCCACCGAGCGAACGAACAGGgc                                                                                >  1:1094969/1‑236 (MQ=255)
                                                                                                                                                              gtgtAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCCGGGCGTACCGTCTCGTATGAACATCGGTCAG‑ATCCTCGAAACCCACCTGGGTATGGCCGCGAAAGGGATCGGCGACAAGATCAACGCCCTGCTGAAAACGGACCAAAGAGCCCCGAAACTGGCCCGATTCATACAGCGGGAGAACGAACTggggggc                                                                             >  1:694027/1‑235 (MQ=255)
                                                                                                                                                                gtAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAG‑ATCCTCGAATCCCACCTGGGTATGGCTGCg                                                                                                                                                                             <  2:1300610/141‑1 (MQ=255)
                                                                                                                                                                gtAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAG‑ATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGGAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATCCAGCGTGCGTCCGACTTGGGCGCTg                                                                            >  2:11654/1‑238 (MQ=255)
                                                                                                                                                                gtAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAG‑ATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATCCAGCGTGCGGACGATCTGGGCGCTg                                                                            >  2:814852/1‑238 (MQ=255)
                                                                                                                                                                gtAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAG‑ATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGAGAAACTGCGCGAATTCATCCAGCGTCCGCACGACCTGGCCGCTg                                                                            >  2:799158/1‑238 (MQ=255)
                                                                                                                                                                gtAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAG‑ATCCTCGAAACCCACCTGGGGATGGCTGCGAAAGGAATCGGCGACACCGTCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGGAACTGCGCGAATTCATCCCGCGCGGGTACAAACTggggcccga                                                                           >  1:758639/1‑233 (MQ=255)
                                                                                                                                                                    tttCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAG‑ATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGCCGCGAAACTGCGCGAATTCATCCAGCGTGCGTACGATCTGGGCGCTGACGt                                                                        >  2:195193/1‑238 (MQ=255)
                                                                                                                                                                       cTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAG‑ATCCTCGAAACCCACCTGGGTCTGGCTGCGAAAGGGATCGGTGACAAGATAAACGCCATGCTGAAACAGCAGCAAGAACTCGCGACACACCCCGAATTACTCCAGCGTGCGTACGACCTGGGCGGTCAAGTTCgg                                                                    >  1:296484/1‑238 (MQ=255)
                                                                                                                                                                         aaGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAG‑ATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATCCAGCGTGCGTACGATCTGGGCGCTGACGTTCGTCa                                                                  <  2:734066/239‑1 (MQ=255)
                                                                                                                                                                         aaGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAG‑ATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATCCAGCGTGCGTACGATCTGGGCGCTGACGTTCGCCa                                                                  >  2:365762/1‑239 (MQ=255)
                                                                                                                                                                               aaCCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAG‑ATCCTCGAAACCCAc                                                                                                                                                                                            <  2:1325885/111‑1 (MQ=255)
                                                                                                                                                                               aaCCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAG‑ATCCTCGAAACCCAc                                                                                                                                                                                            >  1:1325885/1‑111 (MQ=255)
                                                                                                                                                                                   cGATCGAAGATTTGCCTTTGGGTGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAG‑ATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATCCAGCGTGCGTACGATCTGGGCGCTGACGTTCGTCAGAAAGTTGAc                                                        <  1:365762/239‑1 (MQ=255)
                                                                                                                                                                                   cGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAG‑ATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATCCAGCGTGCGTACGATCTGGGCGCTGACGTTCGTCAGAAAGTTGAc                                                        <  2:835338/239‑1 (MQ=255)
                                                                                                                                                                                   cGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAG‑ATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATCCAGCGTGCGTACGATCTGGGCGCTGACGTTCGTCAGAAAGTTGAc                                                        <  2:499941/239‑1 (MQ=255)
                                                                                                                                                                                    gaatgAAAATATGCCTTACGGTCAAACCGGTACGGCGGTACACAACGTACTGAACCAGATGGGCGTACCGGTCCGTATGAACAGCGGTCAG‑ATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGGCGCGAAACTGCGCGAATTCATCCAGCGTGCGTACGATCTGGGCGCTGACGTTCGTCAGAAAGTTGAcc                                                       <  1:108694/235‑1 (MQ=255)
                                                                                                                                                                                      tCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAG‑ATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCCAGAAGTCGCGAAACTGCGCGAATTCATCCAGCGGGCGTACGATCTGGGCGCTGACGTTCGTCAGAAAGTTAACCTg                                                     >  2:1160367/1‑239 (MQ=255)
                                                                                                                                                                                              ttGCCTTACGGTGAAAGCGGTACGCAGGGAGACCTCGTACTGAAGCCGCTGGGGCTACCGTCTCGTATGAACATCGGTCAA‑AACCGCGAAACCCACCTGGGTATGGGTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATCCAGCGTGCGTACGATCTGGGCGCTGACGTTCGTCAGAAAGGTGACCTGAGTACCtt                                             <  1:994200/238‑1 (MQ=255)
                                                                                                                                                                                               tGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGCACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAG‑ATCCTCGAAACCCACCTGGGTATGGCTGCGAACGGTATAGGCGACACGATCCACGCCATGCTGAAACAGCAGCAAGAAGTCGTGAAAACGCGGGAATTCCTACCGCGAGCGTACGACCTGGGCGCTGACGTTAGCCGGAAAGGTGACCTggggaagccc                                            >  1:936681/1‑230 (MQ=255)
                                                                                                                                                                                                 ccTTACGAGGAAAACGGTCAGCCAGTAGACATGGTACTGAACCAGCTTGGCGTCCCGTTGGGTATGAACATCGGTCAG‑AACCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATCCAGCGTGCGTACGATCTGGGCGCTGACGTTCGTCAGAAAGTTGACCTGAGTACCTTCAg                                          <  1:883017/239‑1 (MQ=255)
                                                                                                                                                                                                   ttACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAG‑ATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATCCAGCGTGCGTACGATCTGGGCGCTGACGTTAGTCAGAAAGTTGACCTGAGTACCTCAAGCg                                        >  2:454281/1‑239 (MQ=255)
                                                                                                                                                                                                    tACGATGAAACCGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAG‑ATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCCGCGCCAAGATTAACCCCCCGCTTAAACAGCCGAAAAAAGCCGCGCACCTGCCCGAATTCATCCCGCGTGCGTACGATCTGTGCGCTGACATTCGCCCGAAAGTTCAcccacgacccctcagcgg                                       >  1:948021/1‑223 (MQ=255)
                                                                                                                                                                                                    tACGATGAAAACGGTAAGCCGGTAGACAACGGTCTGAACCAGCTGGGCGTACCGTCTCGGATGAACATCGGTCAG‑ATCCTCGAAACCCAACTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATCCAGCGTGCGTACGATCTGGGCGCTGACGTTCGTCAGAAAGTTGACCTGAGTACCTTCAGCGa                                       <  2:948021/239‑1 (MQ=255)
                                                                                                                                                                                                     aCGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAG‑ATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATCCAGCGTGCGTACGATCTGGGCGCTGACGTTCGTCGGAAAGTTGACCTGAGTACCTTCAGCGAt                                      >  2:1046461/1‑239 (MQ=255)
                                                                                                                                                                                                     aCGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAG‑ATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTAACGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATCCAGCGTGCGTACGATCTGGGCGCTGGCGTTCGTCTGCAAGTTGACCTGAGGACCTTCACCggt                                      >  2:320043/1‑237 (MQ=255)
                                                                                                                                                                                                      cGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAG‑ATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATCCAGCGTGCGTACGATCTTGGCGCTGACGATCGTCAGAAAGTTGACCTGTGACCCTTCAGCgtgg                                     >  2:880588/1‑236 (MQ=255)
                                                                                                                                                                                                            agaCGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAG‑ATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATCCAGCGTGCGTACGATCTGGGCGCTGACGTTCGTCCGAAAGTTGACCTGAGAACCTTCACCGTTGaagaag                               >  2:1240205/3‑239 (MQ=255)
                                                                                                                                                                                                                     gCCGGTAGACCTCGTACTGAACCAGCTGGGCGTACCGTCCCGTATCAACATCGGTCAG‑ATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATCCAGCGTGCGTACGATCTGGGCGCTGACGTTCGTCAGAAAGTTGACCTGAGTACCTTCAGCGATGAAGAAGTTATGCGTc                      <  2:847043/239‑1 (MQ=255)
                                                                                                                                                                                                                             acatggtcatGAACCAGCTGGGCGTTCCTTTTCGTTGGAACAGCGGTCAG‑GTCCCCGAAACCCCCCGGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCTAATTCATCCAGCGTGCGTACGAGCTGGGCGCTGACGTTCGTCAGAAAGTTGACCTGAGTACCTTCAGCGATGAAGAAGTTATGCGTCTGGCTGaa              <  1:561589/230‑1 (MQ=255)
                                                                                                                                                                                                                                 cGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAG‑ATCCTCTAAACTCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATCCAGCGTGCGTACGATCTGGGCGCTGACGTTCGTCAGAAAGTTGACCTGAGTACCTTCAGCGATGAAGAAGGTATTGGTTGGGCTGAAAAca          >  2:25116/1‑238 (MQ=255)
                                                                                                                                                                                                                                 cGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAG‑ATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACACGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCCCGAACCTGCGCCAATTCATCCAGCGTGCGCACGATCTGGACCCTGACGCTCGGCAGAAAATTTGCCTGACTAACTTCCAAGAGGTAGAAGGTATGCGTATGGCTGAAAAc           >  1:703857/1‑238 (MQ=255)
                                                                                                                                                                                                                                 cGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAG‑ATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATCCAGCGTGCGTACGATCTGGGCGCTGACGTTCGTCAGAAAGTTGACCTGAGTACCTTCAGCGGTGAAGAAGTTATGCGTCTGGCTGAAAAcc          >  2:411877/1‑239 (MQ=255)
                                                                                                                                                                                                                                 cGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAG‑ATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATCCAGCGTGCGTACGATCTGGGCGCTGACGTTCGTCAGAAAGTTGACCTGAGTACCTTCAGCGATGAAGAAGTTTTGCGTCTGGCTGAAAAcc          >  2:239825/1‑239 (MQ=255)
                                                                                                                                                                                                                                 cGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAG‑ATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATCCAGCGTGCGTACGATCTGGGCGCTGACGTTCGTCAGAAAGTTGACCTGAGTACCTTCAGCGATGAAGAAGTTATGCGTCTGGCTGAAAAc           >  2:1076311/1‑238 (MQ=255)
                                                                                                                                                                                                                                 cGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAG‑ATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATCCAGCGTGCGTACGATCTGGGCGCTGACGTTCGTCAGAAAGTTGACCTGAGTACCTTCAGCGATGAAGAAGTTATGCGCCTGGCTGAAAAcc          >  2:1006180/1‑239 (MQ=255)
                                                                                                                                                                                                                                 cGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAG‑ATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATCCAGCGTGCGTACGATCTGGGCGCTGACGTTCGTCAGAAAGTTGACCTGAGTACCTTCACCGATGAAGAAGTTATGCGCCTGGCTGAAAAc           >  2:188542/1‑238 (MQ=255)
                                                                                                                                                                                                                                 cGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAG‑ATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCACCCAGCGTCCGTACGAACTGGGCGCTGACGTTGCGCAGAAAGTTGACCCTGGTACCTTCGGGGGTGAAGAAGTTATGGGCCGGGGTAAAAAcc          >  1:1325374/1‑239 (MQ=255)
                                                                                                                                                                                                                                   tACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAG‑ATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATCCAGCGTGCGTACGATCTGGGCGCTGACGTTCGTCAGAAAGTTGACCTGAGTACCTTCACCGATGAAGAAGTTATGCGTCTGGCTGAAAACCt         >  2:310437/1‑238 (MQ=255)
                                                                                                                                                                                                                                   tACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAG‑ATCCTCGAAACCCACCGGGGAATGGCTGCGAAAGGCATCGTCGACAAGTTCAACGCCCGGCTGAAACAGCAGCAAGAAGTCGCGAAACCGCGCGAATTCATCCAGCGTCCGTACTAACTGGGCGCCGACGTCAGTCGGAACGCTGGCCCGAGGACCGACAACGATGAAAAAGATACGCGTcaatgagaaaagaa         >  1:505013/1‑225 (MQ=255)
                                                                                                                                                                                                                                      tGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAG‑ATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGTCGATAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATCCAGCGTGCGTACGATCTGGGCGCTGACGTTCGTCAGAAAGTTGGCCTGAGTACCTTCAGTGATGAATAAGTTATGCGTCTGGCTGAAAACCTgcgc     <  2:1076405/239‑1 (MQ=255)
                                                                                                                                                                                                                                       gAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAG‑GTCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATCCAGCGTGCGTACGATCTGGGCGCTGACGTTCGTCAGAAAGTTGACCTGAGTACCTTCAGCGATGAAGAAGTTATGCGTCTGGCTGAAAACCTGCGCa    <  2:470456/239‑1 (MQ=255)
                                                                                                                                                                                                                                       gAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAG‑ATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATCCAGCGTGCGTACGATCTGGGCGCTGACGTTCGTCAGAAAGTTGACCTGAGTACCTTCAGCGATGAAGAAGTTATGCGTCTGGCTGAAAACCTGCGCa    <  1:392553/239‑1 (MQ=255)
                                                                                                                                                                                                                                         aCCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAG‑ATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATCCAGCGTGCGTACGATCTGGGCGCTGACGTTCGTCAGAAAGTTGACCTGAGAACCTTCAGCGATGAAGAAGTTATGCGTCTGGCTGAAAACCTCCGCaaa  >  2:460237/1‑239 (MQ=255)
                                                                                                                                                                                                                                            |                                                                                                                                                                                                                                            
GAAACACGAGTTCGAGAAGAAACTCGAAGCGAAACGCCGCAAAATCACCCAGGGCGACGATCTGGCACCGGGCGTGCTGAAGATTGTTAAGGTATATCTGGCGGTTAAACGCCGTATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCCGCTGGGCGTACCGTCTCGTATGAACATCGGTCAG‑ATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATCCAGCGTGCGTACGATCTGGGCGCTGACGTTCGTCAGAAAGTTGACCTGAGTACCTTCAGCGATGAAGAAGTTATGCGTCTGGCTGAAAACCTGCGCAAA  >  NC_000913/4184306‑4184777

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A