Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A10 F1 I1 R1	759	65.2	3386260	90.7%	3071337	101.6

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,511,746	(A)_8→9	coding (599/906 nt)	yhfZ ←	putative DNA‑binding transcriptional regulator

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,511,738	1	.	A	96.9%	206.6 / ‑1.6	65	coding (607/906 nt)	yhfZ	putative DNA‑binding transcriptional regulator
Reads supporting (aligned to +/- strand): ref base . (0/2); new base A (33/30); total (33/32)
Fisher's exact test for biased strand distribution p-value = 2.38e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

CGTCGCCTCTAATCCCAGCATGGTCAGTTCGTTTTCCGCCACCACGTTCCAGATCACCGCATCGACATCGCCTTTAACAATGCGTTGTAAACTCTCGTGATAAGAGAGATCGACTCGTTCCACATCACTACCGCC‑A‑AAAAAAA‑CATCGGTCATGATTTTCTGATCCGCCGAACGGTTATCCAGCCCCACGCGCTTCACGTTTGCGGACTCGCCTTTACGGCAAATCAACTGGTGCTCGCCAACGTAGGTGTGCGGCCCCAACTCC  >  NC_000913/3511604‑3511868

cgTCGCCTCTAATCCCAGCATGGTCAGTTCGTTTTCCGCCACCACGTTCCAGATCACCGCATCGACATCGCCTTTAACAATGCGTTGTAAACTCTCGTGATAAGAGAGATCGACTCGTTCCACATCACTACCGCC‑a‑aaa                                                                                                                                 >  1:951309/1‑139 (MQ=255)

cgTCGCCTCTAATCCCAGCATGGTCAGTTCGTTTTCCGCCACCACGTTCCAGATCACCGCATCGACATCGCCTTTAACAATGCGTTGTAAACTCTCGTGATAAGAGAGATCGACTCGTTCCACATCACTACCGCC‑a‑aaa                                                                                                                                 >  1:972105/1‑139 (MQ=255)

     ccTCTAATCCCAGCATGGTCAGTTCGTTTTCCGCCACCACGTTCCAGATCACCGCATCGACATCGCCTTTAACAATGCGTTGTAAACTCTCGTGATAAGAGAGATCGACTCGTTCCACATCACTACCGCC‑a‑aaaaaaaa                                                                                                                            >  2:1445149/1‑138 (MQ=255)

            tCCCAGCATGGTCAGTTCGTTTTCCGCCACCACGTTCCAGATCACCGCATCGACATCGCCTTTAACAATGCGTTGTAAACTCTCGTGATAAGAGAGATCGACTCGTTCCACATCACTACCGCCAA‑AAAAAAA‑CATCGGt                                                                                                                     <  2:951309/139‑1 (MQ=255)

              ccAGCATGGTCAGTTCGTTTTCCGCCACCACGTTCCAGATCACCGCATCGACATCGCCTTTAACAATGCGTTGTAAACTCTCGTGATAAGAGAGATCGACTCGTTCCACATCACTACCGCCAA‑AAAAAAA‑CATCGGTCa                                                                                                                   <  2:247925/139‑1 (MQ=255)

              ccAGCATGGTCAGTTCGTTTTCCGCCACCACGTTCCAGATCACCGCATCGACATCGCCTTTAACAATGCGTTGTAAACTCTCGTGATAAGAGAGATCGACTCGTTCCACATCACTACCGCCAA‑AAAAAAA‑CATCGGTCa                                                                                                                   <  1:185872/139‑1 (MQ=255)

                  cATGGTCAGTTCGTTTTCCGCCACCACGTTCCAGATCACCGCATCGACATCGCCTTTAACAATGCGTTGTAAACTCTCGTGATAAGAGAGATCGACTCGTTCCACATCACTACCGCCAA‑AAAAAAA‑CATCGGTCATGAt                                                                                                               >  1:661312/1‑139 (MQ=255)

                      gTCAGTTCGTTTTCCGCCACCACGTTCCAGATCACCGCATCGACATCGCCTTTAACAATGCGTTGTAAACTCTCGTGATAAGAGAGATCGACTCGTTCCACATCACTACCGCCAA‑AAAAAAA‑CATCGGTCATGATTTTc                                                                                                           >  1:1319415/1‑139 (MQ=255)

                         aGTTCGTCTTCCGCCACCACGTTCCAGATCACCGCATCGACATCGCCTTTAACAATGCGTTGTAAACTCTCGTGATAAGAGAGATCGACTCGTTCCACATCACTACCGCCAA‑AAAAAAA‑CATCGGTCATGATTTTCTGa                                                                                                        <  2:1375561/139‑1 (MQ=255)

                           ttCGTTTTCCGCCACCACGTTCCAGATCACCGCATCGACATCGCCTTTAACAATGCGTTGTAAACTCTCGTGATAAGAGAGATCGACTCGTTCCACATCACTACCGCCAA‑AAAAAAA‑CATCGGTCATGATTTTCTGATc                                                                                                      >  1:141537/1‑139 (MQ=255)

                                tttCCGCCACCACGTTCCAGATCACCGCATCGACATCGCCTTTAACAATGCGTTGTAAACTCTCGTGATAAGAGAGATCGACTCGTTCCACATCACTACCGCCAA‑AAAAAAA‑CATCGGTCATGATTTTCTGATccgccg                                                                                                 <  2:1319415/139‑1 (MQ=255)

                                     gCCACCACGTTCCAGATCACCGCATCGACATCGCCTTTAACAATGCGTTGTAAACTCTCGTGATAAGAGAGATCGACTCGTTCCACATCACTACCGCCAA‑AAAAAAA‑CATCGGTCATGATTTTCTGATCCGCCGAACgg                                                                                            <  1:1445149/139‑1 (MQ=255)

                                        accacGTTCCAGATCACCGCATCGACATCGCCTTTAACAATGCGTTGTAAACTCTCGTGATAAGAGAGATCGACTCGTTCCACATCACTACCGCC‑a‑aaaaaaaaca                                                                                                                          <  2:331493/106‑4 (MQ=255)

                                        accacGTTCCAGATCACCGCATCGACATCGCCTTTAACAATGCGTTGTAAACTCTCGTGATAAGAGAGATCGACTCGTTCCACATCACTACCGCC‑a‑aaaaaaaaca                                                                                                                          >  1:331493/1‑103 (MQ=255)

                                                         cGCATCGACATCGCCTTTAACAATGCGTTGTAAACTCTCGTGATAAGAGAGATCGACTCGTTCCACATCACTACCGCCAA‑AAAAAAA‑CATCGGTCa                                                                                                                   >  1:1066389/1‑96 (MQ=255)

                                                         cGCATCGACATCGCCTTTAACAATGCGTTGTAAACTCTCGTGATAAGAGAGATCGACTCGTTCCACATCACTACCGCCAA‑AAAAAAA‑CATCGGTCa                                                                                                                   <  2:1066389/96‑1 (MQ=255)

                                                         cGCATCGACATCGCCTTTAACAATGCGTTGTAAACTCTCGTGATAAGAGAGATCGACTCGTTCCACATCACTACCGCCAA‑AAAAAAA‑CATCGGTCATGATTTTCTGATCCGCCGAACGGTTATCCAGCCCCAc                                                                              >  1:232094/1‑133 (MQ=255)

                                                         cGCATCGACATCGCCTTTAACAATGCGTTGTAAACTCTCGTGATAAGAGAGATCGACTCGTTCCACATCACTACCGCCAA‑AAAAAAA‑CATCGGTCATGATTTTCTGATCCGCCGAACGGTTATCCAGCCCCAc                                                                              <  2:232094/133‑1 (MQ=255)

                                                         cGCATCGACATCGCCTTTAACAATGCGTTGTAAACTCTCGTGATAAGAGAGATCGACTCGTTCCACATCACTACCGCC‑a‑aaaaaa                                                                                                                              >  2:420057/1‑85 (MQ=255)

                                                         cGCATCGACATCGCCTTTAACAATGCGTTGTAAACTCTCGTGATAAGAGAGATCGACTCGTTCCACATCACTACCGCC‑a‑aaaaaa                                                                                                                              <  1:420057/85‑1 (MQ=255)

                                                           cATCGACATCGCCTTTAACAATGCGTTGTAAACTCTCGTGATAAGAGAGATCGACTCGTTCCACATCACTACCGCCAA‑AAAAAAA‑CATCGGTCATGATTTTCTGATCCGCCGAACgg                                                                                            >  2:332303/1‑117 (MQ=255)

                                                           cATCGACATCGCCTTTAACAATGCGTTGTAAACTCTCGTGATAAGAGAGATCGACTCGTTCCACATCACTACCGCCAA‑AAAAAAA‑CATCGGTCATGATTTTCTGATCCGCCGAACgg                                                                                            <  1:332303/117‑1 (MQ=255)

                                                           cATCGACATCGCCTTTAACAATGCGTTGTAAACTCTCGTGATAAGAGAGATCGACTCGTTCCACATCACTACCGCCAA‑AAAAAAA‑CATCGGTCATGATTTTCTGATCCGCCGAACGGTTATCCAGCCCCAcg                                                                             >  1:521544/1‑132 (MQ=255)

                                                           cATCGACATCGCCTTTAACAATGCGTTGTAAACTCTCGTGATAAGAGAGATCGACTCGTTCCACATCACTACCGCCAA‑AAAAAAA‑CATCGGTCATGATTTTCTGATCCGCCGAACGGTTATCCAGCCCCAcg                                                                             <  2:521544/132‑1 (MQ=255)

                                                           cATCGACATCGCCTTTAACAATGCGTTGTAAACTCTCGTGATAAGAGAGATCGACTCGTTCCACATCACTACCGCCAA‑AAAAAAA‑CATCGGTCATGATTTTCTGATCCGCCGAACGGTTATCCAGCCCCACGCGCTTCa                                                                      >  1:1512798/1‑139 (MQ=255)

                                                                aCATCGCCTTTAACAATGCGTTGTAAACTCTCGTGATAAGAGAGATCGACTCGTTCCACATCACTACCGCCAA‑AAAAAAA‑CATCGGTCATGATTTTCTGATCCGCCGAACgg                                                                                            >  2:1111272/1‑112 (MQ=255)

                                                                aCATCGCCTTTAACAATGCGTTGTAAACTCTCGTGATAAGAGAGATCGACTCGTTCCACATCACTACCGCCAA‑AAAAAAA‑CATCGGTCATGATTTTCTGATCCGCCGAACgg                                                                                            <  1:1111272/112‑1 (MQ=255)

                                                                  aTCGCCTTTAACAATGCGTTGTAAACTCTCGTGATAAGAGAGATCGACTCGTTCCACATCACTACCGCCAA‑AAAAAAA‑CATCGGTCATGATTTTCTGATCCGCCGAACGGTTATCCAGCCCCACGCGCTTCACg                                                                    >  2:345952/1‑134 (MQ=255)

                                                                  aTCGCCTTTAACAATGCGTTGTAAACTCTCGTGATAAGAGAGATCGACTCGTTCCACATCACTACCGCCAA‑AAAAAAA‑CATCGGTCATGATTTTCTGATCCGCCGAACGGTTATCCAGCCCCACGCGCTTCACg                                                                    <  1:345952/134‑1 (MQ=255)

                                                                       cTTTAACAATGCGTTGTAAACTCTCGTGATAAGAGAGATCGACTCGTTCCACATCACTACCGCCAA‑AAAAAAA‑CATCGGTCATGATTTTCTGATCCGCCGAACGGTTATCCAGCCCCACGCGCTTCACGTTTGCGGACt                                                          <  2:1512798/139‑1 (MQ=255)

                                                                          tAACAATGCGTTGTAAACTCTCGTGATAAGAGAGATCGACTCGTTCCACATCACTACCGCCAA‑AAAAAAA‑CATCGGTCATGATTTTCTGAt                                                                                                       <  1:877101/91‑1 (MQ=255)

                                                                          tAACAATGCGTTGTAAACTCTCGTGATAAGAGAGATCGACTCGTTCCACATCACTACCGCCAA‑AAAAAAA‑CATCGGTCATGATTTTCTGAt                                                                                                       >  2:877101/1‑91 (MQ=255)

                                                                                     tGTAAACTCTCGTGATAAGAGAGATCGACTCGTTCCACATCACTACCGCCAA‑AAAAAAA‑CATCGGTCATGATTTTCTGATccgccg                                                                                                 >  1:67333/1‑86 (MQ=255)

                                                                                     tGTAAACTCTCGTGATAAGAGAGATCGACTCGTTCCACATCACTACCGCCAA‑AAAAAAA‑CATCGGTCATGATTTTCTGATccgccg                                                                                                 <  2:67333/86‑1 (MQ=255)

                                                                                     tGTAAACTCTCGTGATAAGAGAGATCGACTCGTTCCACATCACTACCGCCAA‑AAAAAAA‑CATCGGTCATGATTTTCTGATCCGCCGAACGGTTATCCAGCCCCACGCGCTTCACGTTTg                                                                >  2:917373/1‑119 (MQ=255)

                                                                                     tGTAAACTCTCGTGATAAGAGAGATCGACTCGTTCCACATCACTACCGCCAA‑AAAAAAA‑CATCGGTCATGATTTTCTGATCCGCCGAACGGTTATCCAGCCCCACGCGCTTCACGTTTg                                                                <  1:917373/119‑1 (MQ=255)

                                                                                            tctcGTGATAAGAGAGATCGACTCGTTCCACATCACTACCGCCAA‑AAAAAAA‑CATCGGTCATGATTTTCTGATCCGCCGAACgg                                                                                            >  2:289191/1‑84 (MQ=255)

                                                                                            tctcGTGATAAGAGAGATCGACTCGTTCCACATCACTACCGCCAA‑AAAAAAA‑CATCGGTCATGATTTTCTGATCCGCCGAACgg                                                                                            <  1:289191/84‑1 (MQ=255)

                                                                                            tctcGTGATAAGAGAGATCGACTCGTTCCACATCACTACCGCCAA‑AAAAAAA‑CATCGGTCATGATTTTCTGATCCGCCGAACGGTTATCCAGCCCCACGCGCTTCACGTTTGCGGACt                                                          <  1:1520308/118‑1 (MQ=255)

                                                                                            tctcGTGATAAGAGAGATCGACTCGTTCCACATCACTACCGCCAA‑AAAAAAA‑CATCGGTCATGATTTTCTGATCCGCCGAACGGTTATCCAGCCCCACGCGCTTCACGTTTGCGGACt                                                          >  2:1520308/1‑118 (MQ=255)

                                                                                                 tGATAAGAGAGATCGACTCGTTCCACATCACTACCGCCAA‑AAAAAAA‑CATCGGTCATGATTTTCTGATCCGCCGAACGGTTATCCAGCCCCACGCGCTTCACGTTTGCGGACTCGCCTTTACGGCAAATCAACTGGTGc                                >  1:1156986/1‑139 (MQ=255)

                                                                                                   aTAAGAGAGATCGACTCGTTCCACATCACTACCGCCAA‑AAAAAAA‑CATCGGTCATGATTTTCTGATCCGCCGAACGGTTATCCAGCCCCAcg                                                                             >  2:275411/1‑92 (MQ=255)

                                                                                                   aTAAGAGAGATCGACTCGTTCCACATCACTACCGCCAA‑AAAAAAA‑CATCGGTCATGATTTTCTGATCCGCCGAACGGTTATCCAGCCCCAcg                                                                             <  1:275411/92‑1 (MQ=255)

                                                                                                   aTAAGAGAGATCGACTCGTTCCACATCACTACCGCCAA‑AAAAAAA‑CATCGGTCATGATTTTCTGATCCGCCGAACGGTTATCCAGCCCCACGCGCTTCACGTTTGCGGACTCGCCTTTACGGCAAATCAACTGGTGCTc                              <  2:661312/139‑1 (MQ=255)

                                                                                                        agagaTCGACTCGTTCCACATCACTACCGCCAA‑AAAAAAA‑CATCGGTCATGATTTTCTGATCCGCCGAACGGTTATCCAGCCCCACGCGCTTCACGTTTGCGGACTCGCCTTTACGGCAAATCAACTGGTGCTCGCCaa                         <  2:141537/139‑1 (MQ=255)

                                                                                                        agagaTCGACTCGTTCCACATCACTACCGCC‑a‑aaaaaaaaca                                                                                                                          <  1:23804/42‑4 (MQ=255)

                                                                                                        agagaTCGACTCGTTCCACATCACTACCGCC‑a‑aaaaaaaaca                                                                                                                          >  2:23804/1‑39 (MQ=255)

                                                                                                          agaTCGACTCGTTCCACATCACTACCGCCAA‑AAAAAAA‑CATCGGTCATGATTTTCTGATCCGCCGAACGGTTATCCATCCCCACGCGCTTCACGTTTGCGGACTCGCCTTTACGGCAAATCAACTGGTGCTCGCCAACg                       >  2:1070062/1‑139 (MQ=255)

                                                                                                           gaTCGACTCGTTCCACATCACTACCGCCAA‑AAAAAAA‑CATCGGTCATGATTTTCTGAt                                                                                                       <  2:112465/58‑1 (MQ=255)

                                                                                                           gaTCGACTCGTTCCACATCACTACCGCCAA‑AAAAAAA‑CATCGGTCATGATTTTCTGAt                                                                                                       >  1:112465/1‑58 (MQ=255)

                                                                                                            aTCGACTCGTTCCACATCACTACCGCCAA‑AAAAAAA‑CATCGGTCATGATTTTCTGATCCGCCGAACGGTTATCCAGCCCCACGCGCTTCACGTTTGCGGACTCGCCTTTACGGCAAATCAACTGGTg                                 <  1:393458/127‑1 (MQ=255)

                                                                                                            aTCGACTCGTTCCACATCACTACCGCCAA‑AAAAAAA‑CATCGGTCATGATTTTCTGATCCGCCGAACGGTTATCCAGCCCCACGCGCTTCACGTTTGCGGACTCGCCTTTACGGCAAATCAACTGGTg                                 >  2:393458/1‑127 (MQ=255)

                                                                                                            aTCGACTCGTTCCACATCACTACCGCCAA‑AAAAAAA‑CATCGGTCATGATTTTCTGATCCGCCGAACGGTTATCCAGCCCCACGCGCTTCACGTTTGCGGACTCGCCTTTACGGCAAATCAACTGGTGCTc                              >  2:559935/1‑130 (MQ=255)

                                                                                                            aTCGACTCGTTCCACATCACTACCGCCAA‑AAAAAAA‑CATCGGTCATGATTTTCTGATCCGCCGAACGGTTATCCAGCCCCACGCGCTTCACGTTTGCGGACTCGCCTTTACGGCAAATCAACTGGTGCTc                              <  1:559935/130‑1 (MQ=255)

                                                                                                            aTCGACTCGTTCCACATCACTACCGCCAA‑AAAAAAA‑CATCGGTCATGATTTTCTGATCCGCCGAACGGTTATCCAGCCCCACGCGCTTCACGTTTGCGGACTCGCCTTTACGGCAAATCAACTGGTGCTCGCCAACGTa                     >  2:432460/1‑139 (MQ=255)

                                                                                                            aTCGACTCGTTCCACATCACTACCGCCAA‑AAAAAAA‑CATCGGTCATGATTTTCTGATCCGCCGAACGGTTATCCACCCCCACGCGCTTCACGCTTGCGGACTCGTCTTTACGGCAAATCAACTGGTGCTCGCCAACGTa                     >  2:1160903/1‑139 (MQ=255)

                                                                                                               gACTCGTTCCACATCACTACCGCCAA‑AAAAAAA‑CATCGGTCATGATTTTCTGATCCGCCGAACGGTTATCCAGCCCCAcg                                                                             >  2:822168/1‑80 (MQ=255)

                                                                                                               gACTCGTTCCACATCACTACCGCCAA‑AAAAAAA‑CATCGGTCATGATTTTCTGATCCGCCGAACGGTTATCCAGCCCCAcg                                                                             <  1:822168/80‑1 (MQ=255)

                                                                                                                aCTCGTTCCACATCACTACCGCCAA‑AAAAAAA‑CATCGGTCATGATTTTCTGATCCGCCGAACGGTTATCCAGCCCCACGCGCTTCACGTTTGCGGACTc                                                         >  2:1520453/1‑99 (MQ=255)

                                                                                                                aCTCGTTCCACATCACTACCGCCAA‑AAAAAAA‑CATCGGTCATGATTTTCTGATCCGCCGAACGGTTATCCAGCCCCACGCGCTTCACGTTTGCGGACTc                                                         <  1:1520453/99‑1 (MQ=255)

                                                                                                                   cGTTCCCCATCACTACCGCC‑A‑AAAAAAACCATCGGTCATGATTTTCTGATCCGCCGAACGGTTATCCAGCCCCACGCGCTTCACGTTTGCGGACTCGCCTTTACGGCAAATCAACTGGTGCTCGCCAACGTAGGTGTGc              <  2:972105/139‑1 (MQ=255)

                                                                                                                      tCCACATCACTACCGCCAA‑AAAAAAA‑CATCGGTCATGATTTTCTGATCCGCCGAACGGTTATCCAGCCCCACGCGCTTCACGTTTGCGGACTCGCCTTTACGGCAAATCAACTGGTGCTc                              >  2:844942/1‑120 (MQ=255)

                                                                                                                      tCCACATCACTACCGCCAA‑AAAAAAA‑CATCGGTCATGATTTTCTGATCCGCCGAACGGTTATCCAGCCCCACGCGCTTCACGTTTGCGGACTCGCCTTTACGGCAAATCAACTGGTGCTc                              <  1:844942/120‑1 (MQ=255)

                                                                                                                               cTACCGCCAA‑AAAAAAA‑CATCGGTCATGATTTTCTGATCCGCCGAACGGTTATCCAGCCCCACGCGCtt                                                                        <  2:810229/69‑1 (MQ=255)

                                                                                                                               cTACCGCCAA‑AAAAAAA‑CATCGGTCATGATTTTCTGATCCGCCGAACGGTTATCCAGCCCCACGCGCtt                                                                        >  1:810229/1‑69 (MQ=255)

                                                                                                                               cTACCGCCAA‑AAAAAAA‑CATCGGTCATGATTTTCTGATCCGCCGAACGGTTATCCAGCCCCACGCGCTTCACGTTTGCGGACTCGCCTTTACGGCAAATCAACTGGTGCTCGCCAACGTAGGTGTGCGGCCCCAACTcc  >  2:1364359/1‑139 (MQ=255)

                                                                                                                               cTACCGCCAA‑AAAAAAA‑CATCGGTCATGATTTTCTGATCCGCCGAACGGTTATCCAGCCCCACGCGCTTCACGTTTGCGGACTCGCCTTTACGGCAAATCAACTGGTGCTCGCCAACGTAGGTGTGCGGCCCCAACTcc  >  2:673292/1‑139 (MQ=255)

                                                                                                                               cTACCGCCAA‑AAAAAAA‑CATCGGTCATGATTTTCTGATCCGCCGAACGGTTATCCAGCCCCACGCGCTTCACGTTTGCGGACTCGCCTTTACGGCAAATCAACTGGTGCTCGCCAACGTAGGTGTGCGGCCCCAACTcc  >  1:599871/1‑139 (MQ=255)

                                                                                                                                tACCGCCAA‑AAAAAAA‑CATCGGTCATGATTTTCTGATCCGCCGaa                                                                                               >  2:289780/1‑45 (MQ=255)

                                                                                                                                tACCGCCAA‑AAAAAAA‑CATCGGTCATGATTTTCTGATCCGCCGaa                                                                                               <  1:289780/45‑1 (MQ=255)

                                                                                                                                tACCGCCAA‑AAAAAAA‑CATCGGTCATGATTTTCTGATCCGCCGAACGGTTATCCAGCCCCACGCGCTTCACGTTTGCGGACTCGCCTTTACGGCAAATCAACTGGTGCTCGCCAACGTAGGtgtg               >  2:361767/1‑125 (MQ=255)

                                                                                                                                tACCGCCAA‑AAAAAAA‑CATCGGTCATGATTTTCTGATCCGCCGAACGGTTATCCAGCCCCACGCGCTTCACGTTTGCGGACTCGCCTTTACGGCAAATCAACTGGTGCTCGCCAACGTAGGtgtg               <  1:361767/125‑1 (MQ=255)

                                                                                                                                tACCGCCAA‑AAAAAAA‑CAGCGGTCATGATTTTCTGATCCGCCGAACGGTTATCCAGCCCCACGCGCTTCACGTTTGCGGACTCGCCTTTACgg                                               >  1:1114373/1‑93 (MQ=255)

                                                                                                                                tACCGCC‑AGAAAAAAA‑CATCGGTCATGATTTTCTGATCCGCCGAACGGTTATCTAGCCCCACGCGCTTCACGTTTGCGGACTCGCCTTTACgg                                               <  2:1114373/93‑1 (MQ=255)

CGTCGCCTCTAATCCCAGCATGGTCAGTTCGTTTTCCGCCACCACGTTCCAGATCACCGCATCGACATCGCCTTTAACAATGCGTTGTAAACTCTCGTGATAAGAGAGATCGACTCGTTCCACATCACTACCGCC‑A‑AAAAAAA‑CATCGGTCATGATTTTCTGATCCGCCGAACGGTTATCCAGCCCCACGCGCTTCACGTTTGCGGACTCGCCTTTACGGCAAATCAACTGGTGCTCGCCAACGTAGGTGTGCGGCCCCAACTCC  >  NC_000913/3511604‑3511868

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 16 ≤` `ATCG/ATCG` `< 31 ≤` `ATCG/ATCG` `< 38 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A