Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A11 F1 I1 R1
|
757 |
76.1 |
3598070 |
93.4% |
3360597 |
108.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,511,746 |
(A)8→9 |
coding (599/906 nt) |
yhfZ ← |
putative DNA‑binding transcriptional regulator |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,511,738 | 1 | . | A | 98.2%
| 170.6
/ ‑3.8
| 54 | coding (607/906 nt) | yhfZ | putative DNA‑binding transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base . (1/0); new base A (31/22); total (32/22) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.83e-01 |
CGGCGTCGCCTCTAATCCCAGCATGGTCAGTTCGTTTTCCGCCACCACGTTCCAGATCACCGCATCGACATCGCCTTTAACAATGCGTTGTAAACTCTCGTGATAAGAGAGATCGACTCGTTCCACATCACTACCGCC‑‑AAAAAAAACA‑TCGGTCATGATTTTCTGATCCGCCGAACGGTTATCCAGCCCCACGCGCTTCACGTTTGCGGACTCGCCTTTACGGCAAATCAACTGGTGCTCGCCAACGTAGGTGTGCGGCCCCAACTCCAG > NC_000913/3511601‑3511870
|
cggcgTCGCCTCTAATCCCAGCATGGTCAGTTCGTTTTCCGCCACCACGTTCCAGATCACCGCATCGACATCGCCTTTAACAATGCGTTGTAAACTCTCGTGATAAGAGAGATCGACTCGTTCCACATCACTACCGCC‑‑a > 2:375360/1‑139 (MQ=255)
gcgTCGCCTCTAATCCCAGCATGGTCAGTTCGTTTTCCGCCACCACGTTCCAGATCACCGCATCGACATCGCCTTTAACAATGCGTTGTAAACTCTCGTGATAAGAGAGATCGACTCGTTCCACATCACTACCGCC‑‑aaa > 1:1617386/1‑139 (MQ=255)
cgTCGCCTCTAATCCCAGCATGGTCAGTTCGTTTTCCGCCACCACGTTCCAGATCACCGCATCGACATCGCCTTTAACAATGCGTTGTAAACTCTCGTGATAAGAGAGATCGACTCGTTCCACATCACTACCGCC‑‑aaaa > 1:441125/1‑139 (MQ=255)
tctAATCCCAGCATGGTCAGTTCGTTTTCCGCCACCACGTTCCAGATCACCGCATCGACATCGCCTTTAACAATGCGTTGTAAACTCTCGTGATAAGAGAGATCGACTCGTTCCACATCACTACCGCC‑‑aaaaaaaaaca < 2:390949/139‑4 (MQ=255)
aGCATGGTCAGTTCGTTTTCCGCCACCACGTTCCAGATCACCGCATCGACATCGCCTTTAACAATGCGTTGTAAACTCTCGTGATAAGAGAGATCGACTCGTTCCACATCACTACCGCCA‑AAAAAAAACA‑TCGGTCATg < 2:3595/139‑1 (MQ=255)
cATGGTCAGTTCGTTTTCCGCCACCACGTTCCAGATCACCGCATCGACATCGCCTTTAACAATGCGTTGTAAACTCTCGTGATAAGAGAGATCGACTCGTTCCACATCACTACCGCCA‑AAAAAAAACA‑TCGGTCATGAt > 1:252249/1‑139 (MQ=255)
ggTCAGTTCGTTTTCCGCCACCACGTTCCAGATCACCGCATCGACATCGCCTTTAACAATGCGTTGTAAACTCTCGTGATAAGAGAGATCGACTCGTTCCACATCACTACCGCCA‑AAAAAAAACA‑TCGGTCATGAtttt > 1:502647/1‑139 (MQ=255)
tCAGTTCGTTTTCCGCCACCACGTTCCAGATCACCGCATCGACATCGCCTTTAACAATGCGTTGTAAACTCTCGTGATAAGAGAGATCGACTCGTTCCACATCACTACCGCCA‑AAAAAAAACA‑TCGGTCATGATTTTCt > 2:657586/1‑139 (MQ=255)
gTTCGTTTTCCGCCACCACGTTCCAGATCACCGCATCGACATCGCCTTTAACAATGCGTTGTAAACTCTCGTGATAAGAGAGATCGACTCGTTCCACATCACTACCGCCA‑AAAAAAAACA‑TCGGTCATGATTTTCTGAt > 1:967368/1‑139 (MQ=255)
tttCCGCCACCACGTTCCAGATCACCGCATCGACATCGCCTTTAACAATGCGTTGTAAACTCTCGTGATAAGAGAGATCGACTCGTTCCACATCACTACCGCCA‑AAAAAAAACA‑TCGGTCATGATTTTCTGATccgccg < 2:502647/139‑1 (MQ=255)
tttCCGCCACCACGTTCCAGATCACCGCATCGACATCGCCTTTAACAATGCGTTGTAAACTCTCGTGATAAGAGAGATCGACTCGTTCCACATCACTACCGCCA‑AAAAAAAACA‑TCGGTCATGATTTTCTGATccgccg < 2:1617386/139‑1 (MQ=255)
gCCACCACGTTCCAGATCACCGCATCGACATCGCCTTTAACAATGCGTTGTAAACTCTCGTGATAAGAGAGATCGACTCGTTCCACATCACTACCGCCAAAAAAAAAACA‑TCGGTCATGATTTTCTGAt < 1:1348336/129‑1 (MQ=255)
gCCACCACGTTCCAGATCACCGCATCGACATCGCCTTTAACAATGCGTTGTAAACTCTCGTGATAAGAGAGATCGACTCGTTCCACATCACTACCGCCAAAAAAAAAACA‑TCGGTCATGATTTTCTGAt > 2:1348336/1‑129 (MQ=255)
gCCACCACGTTCCAGATCACCGCATCGACATCGCCTTTAACAATGCGTTGTAAACTCTCGTGATAAGAGAGATCGACTCGTTCCACATCACTACCGCCA‑AAAAAAAACA‑TCGGTCATGATTTTCTGATCCGCCGAACgg < 2:1034188/139‑1 (MQ=255)
cGCATAGACATCGCCTTTAACAATCAGTTGAAAACTCTCGTAATACTAAAAATCGCCGCGTTTCACTCCGCTTCCCCCT‑AAAAAAACCACCCGATCCCG‑TTTTCTGCTCCGCCGAACGGTTATTCACCCacacacctct > 1:284025/1‑133 (MQ=255)
cATCGACATCGCCTTTAACAATGCGTTGTAAACTCTCGTGATAAGAGAGATCGACTCGTTCCACATCACTACCGCCA‑AAAAAAAACA‑TCGGTCATGATTTTCTGATCCGCCGAAc < 1:1039947/115‑1 (MQ=255)
cATCGACATCGCCTTTAACAATGCGTTGTAAACTCTCGTGATAAGAGAGATCGACTCGTTCCACATCACTACCGCCA‑AAAAAAAACA‑TCGGTCATGATTTTCTGATCCGCCGAAc > 2:1039947/1‑115 (MQ=255)
tCGACATCGCCTTTAACAATGCGTTGTAAACTCTCGTGATAAGAGAGATCGACTCGTTCCACATCACTACCGCCA‑AAAAAAAACA‑TCGGTCATGATTTTCTGATCCGCCGAACGGTTATCCAGCCCCACGCGCTTCACg > 1:1503956/1‑139 (MQ=255)
tCGCCTTTAACAATGCGTTGTAAACTCTCGTGATAAGAGAGATCGACTCGTTCCACATCACTACCGCCA‑AAAAAAAACA‑TCGGTCATGATTTTCTGATCCGCCGAACGGTTATCCAGCCCCACGCGCTTCACGTTTGCg < 2:967368/139‑1 (MQ=255)
ccTTTAACAATGCGTTGTAAACTCTCGTGATAAGAGAGATCGACTCGTTCCACATCACTACCGCCA‑AAAAAAAACA‑TCgg < 2:15408/80‑1 (MQ=255)
ccTTTAACAATGCGTTGTAAACTCTCGTGATAAGAGAGATCGACTCGTTCCACATCACTACCGCCA‑AAAAAAAACA‑TCgg > 1:15408/1‑80 (MQ=255)
ccTTTAACAATGCGTTGTAAACTCTCGTGATAAGAGAGATCGACTCGTTCCACATCACTACCGCCA‑AAAAAAAACA‑TCGGTCATGATTTTCTGAt < 2:606466/95‑1 (MQ=255)
ccTTTAACAATGCGTTGTAAACTCTCGTGATAAGAGAGATCGACTCGTTCCACATCACTACCGCCA‑AAAAAAAACA‑TCGGTCATGATTTTCTGAt > 1:606466/1‑95 (MQ=255)
cTTTAACAATGCGTTGTAAACTCTCGTGATAAGAGAGATCGACTCGTTCCACATCACTACCGCCA‑AAAAAAAACA‑TCGGTCATGATTTTCTGATCCGCCGAACGGTTATCCAGCCCCACGCGCTTCACGTTTGCGGACt < 1:657586/139‑1 (MQ=255)
tttAACAATGCGTTGTAAACTCTCGTGATAAGAGAGATCGACTCGTTCCACATCACTACCGCCA‑AAAAAAAACA‑TCGGTCATGATTTTCTGATCCGCCGAACGGTTATCCAGCCCCACGCGCTTCACGTTTGCGGACTc < 2:441125/139‑1 (MQ=255)
tGCGTTGTAAACTCTCGTGATAAGAGAGATCGACTCGTTCCACATCACTACCGCCA‑AAAAAAAACA‑TCGGTCATGATTTTCTGATCCGCCGAACGGTTATCCAGCCCCACGCGCTTCACGTTTGCGGACTCGCCTTTAc > 1:835296/1‑139 (MQ=255)
gCGTTGTAAACTCTCGTGATAAGAGAGATCGACTCGTTCCACATCACTACCGCCA‑AAAAAAAACA‑TCGGTCATGATTTTCTGATCCGCCGAACGGTTATCCAGCCCCACGCGCTTCACGTTTGCGGACTCGCCTTTACg > 1:33561/1‑139 (MQ=255)
gCGTTGTAAACTCTCGTGATAAGAGAGATCGACTCGTTCCACATCACTACCGCCA‑AAAAAAAACA‑TCGGTCATGATTTTCTGATCCGCCGAACGGTTATCCAGCCCCACGCGCTTCACGTTTGCGGACTCGCCTTTACg > 1:1423309/1‑139 (MQ=255)
cGTTGTAAACTCTCGTGATAAGAGAGATCGACTCGTTCCACATCACTACCGCCA‑AAAAAAAACA‑TCGGTCATGATTTTCTGATCCGCCGAACGGTTATCCAGCCCCACGCGCTTCACGTTTGCGGACTCGCCTTTACgg < 2:1503956/139‑1 (MQ=255)
tctcGTGTTAAGAGAGATCGACTCGTTCCACATCACTACCGCCA‑AAAAAAAACA‑TCGGTCATGATTTTCTGATCCGCCGAACGGTTATCCAGCCCCACGCGCTTCACGTTTGCGGACTCGCCTTTACGGCAAATCAACt > 1:1196363/1‑139 (MQ=255)
tcGTGATAAGAGAGATCGACTCGTTCCACATCACTACCGCC‑‑a > 2:343374/1‑42 (MQ=255)
tcGTGATAAGAGAGATCGACTCGTTCCACATCACTACCGCC‑‑a < 1:343374/42‑1 (MQ=255)
gTGATAAGAGAGATCGACTCGTTCCACATCACTACCGCCA‑AAAAAAAACA‑TCGGTCATGATTTTCTGATCCGCCGAACGGTTATCCAGCCCCACGCGCTTCACGTTTGCGGACTCGCCTTTACGGCAAATCAACTGGTg < 2:1259231/139‑1 (MQ=255)
tGATAAGAGAGATCGACTCGTTCCACATCACTACCGCCA‑AAAAAAAACA‑TCGGTCATGATTTTCTGATCCGCCGAACGGTTa < 2:1280145/82‑1 (MQ=255)
tGATAAGAGAGATCGACTCGTTCCACATCACTACCGCCA‑AAAAAAAACA‑TCGGTCATGATTTTCTGATCCGCCGAACGGTTa > 1:1280145/1‑82 (MQ=255)
tGATAAGAGAGATCGACTCGTTCCACATCACTACCGCCA‑AAAAAAAACA‑TCGGTCATGATTTTCTGATCCGCCGAACGGTTATCCAGCCCCACGCGCTTCACGTTTGCGGACTCGCCTTTACGGCAAATCAACTGGTGc > 2:1717326/1‑139 (MQ=255)
aaGAGAGATCGACTCGTTCCACATCACTACCGCCA‑AAAAAAAACA‑TCGGTCATGATTTTCTGATCCGCCGAACGGTTATCCAGCCCCACGCGCTTCACGTTTGCGGACTCGCCTTTACGGCAAATCAACTGGTGCTCGc < 2:599911/139‑1 (MQ=255)
aaGAGAGATCGACTCGTTCCACATCACTACCGCCA‑AAAAAAAACA‑TCGGTCATGATTTTCTGATCCGCCGAACGGTTATCCAGCCCCACGCGCTTCACGTTTGCGGACTCGCCTTTACGGCAAATCAACTGGTGCTCGc < 2:835296/139‑1 (MQ=255)
agagaTCGACTCGTTCCACATCACTACCGCCA‑AAAAAAAACA‑TCGGTCATGATTTTCTGATCCGCCGAACGGTTATCCAGCCCCACGCGCTTCACGTTTGCGGACTCGCCTTTACGGCAAATCAACTGGTGCTCGCCaa > 2:1230740/1‑139 (MQ=255)
agagaTCGACTCGTTCCACATCACTACCGCCA‑AAAAAAAACA‑TCGGTCATGATTTTCTGATCCGCCGAACGGTTATCCAGCCCCACGCGCTTCACGTTTGCGGACTCGCCTTTACGGCAAATCAACTGGTGCTCGCCaa > 2:563683/1‑139 (MQ=255)
agagaTCGACTCGTTCCACATCACTACCGCCA‑AAAAAAAACA‑TCGGTCATGATTTTCTGATCCGCCGAACGGTTATCCAACCCCACGCGCTTCACGTTTGCGGACTCGCCTTTACGGCAAATCAACTGGTGCTCGCCaa > 1:1359428/1‑139 (MQ=255)
aTCGACTCGTTCCACATCACTACCGCCA‑AAAAAAAACA‑TCGGTCATGATTTTCTGATCCGCCGAACGGTTATCCAGCCCCACGCGCTTCACGTTTGCGGACTCGCCTTTACGGCAAATCAACTGGTGCTCGCCAACGTa > 1:555928/1‑139 (MQ=255)
aTCGACTCGTTCCACATCACTACCGCCA‑AAAAAAAACA‑TCGGTCATGATTTTCTGATCCGCCGAACGGTTATCCAGCCCCACGCGCTTCACGTTTGCGGACTCGCCTTTACGGCAAATCAACTGGTGCTCGCCAACGTa > 2:955027/1‑139 (MQ=255)
aTCGACTCGTTCCACATCACTACCGCCA‑AAAAAAAACA‑TCGGTCATGATTTTCTGATCCGCCGAACGGTTATCCAGCCCCACGCGCTTCACGTTTGCGGACTCGCCTTTACGGCAAATCAACTGGTGCTCGCCAACGTa > 1:232344/1‑139 (MQ=255)
aTCGACTCGTTCCACATCACTACCGCCA‑AAAAAAAACA‑TCGGTCATGATTTTCTGATCCGCCGAACGGTTATCCAGCCCCACGCGCTTCACGTTTGCGGACTCGCCTTTACGGCAAATCAACTGGTGCTCGCCAACGTa > 2:1523746/1‑139 (MQ=255)
aTCGACTCGTTCCACATCACTACCGCCA‑AAAAAAAACA‑TCGGTCATGATTTTCTGATCCGCCGAACGGTTATCCAGCCCCACGCGCTTCACGTTTGCGGACTCGCCTTTACGGCAAATCAACTGGTGCTCGCCAACGTa > 1:1260957/1‑139 (MQ=255)
cTCGTTCCACATCACTACCGCCA‑AAAAAAAACA‑TCGGTCATGATTTTCTGATCCGCCGAACGGTTATCCAGCCCCCCGCGCCTCCCGTCTGCCGCCTCCCCTTTACGCCCAATCACCTCGTGCTCGCCACCGTCGgtgt > 1:1626082/1‑139 (MQ=255)
tCGTTCCACATCACTACCGCCA‑AAAAAAAACA‑TCGGTCATGATTTTCTGATCCGCCGAACGGTTATCCAGCCCCACGCGCTTCACGTTTGCGGACTCGCCTTTACg < 1:229219/106‑1 (MQ=255)
tCGTTCCACATCACTACCGCCA‑AAAAAAAACA‑TCGGTCATGATTTTCTGATCCGCCGAACGGTTATCCAGCCCCACGCGCTTCACGTTTGCGGACTCGCCTTTACg > 2:229219/1‑106 (MQ=255)
cGTTCCACATCACTACCGCCA‑AAAAAAAACA‑TCGGTCATGATTTTCTGATCCGCCGAACGGTTATCCAGCCCCACGCGCTTCACGTTTGCGGACTCGCCTTTACGGCAAATCAACTGGTGCTCGCCAACGTAGGTGTGc < 2:555928/139‑1 (MQ=255)
tCCACATCACTACCGCCA‑AAAAAAAACA‑TCGGTCATGATTTTCTGATCCGCCGAACGGTTATCCAGCCCCACGCGCTTCACGTTTGCGGACTCGCCTTTACGGCAAATCAACTGGTGCTCGCCAACGTAGGTGTGCGGc < 1:1523746/139‑1 (MQ=255)
tACCGCCA‑AAAAAAAACA‑TCGGTCATGATTTTCTGATCCGCCGAACGGTTATCCAGCCCCACGCGCTTCACGTTTGCGGACTCGCCTTTACGGCAAATCAAc < 1:143434/102‑1 (MQ=255)
tACCGCCA‑AAAAAAAACA‑TCGGTCATGATTTTCTGATCCGCCGAACGGTTATCCAGCCCCACGCGCTTCACGTTTGCGGACTCGCCTTTACGGCAAATCAAc > 2:143434/1‑102 (MQ=255)
tACCGCCA‑AAAAAAAACA‑TCGGTCATGATTTTCTGATCCGCCGAACGGTTATCCAGCCCCACGCGCTTCACGTTTGCGGACTCGCCTTTACGGCAAATCAACTTGTGCTCGCCAACGTAGGTGTGCGGCCCCAACTCCa > 2:811623/1‑139 (MQ=255)
tACCGCCA‑AAAAAAAACA‑TCGGTCATGATTTTCTGATCCGCCGAACGGTTATCCAGCCCCACGCGCTTCACGTTTGCGGACTCGCCTTTACGGCAAATCAACTGGTGCTCGc < 2:395116/112‑1 (MQ=255)
tACCGCCA‑AAAAAAAACA‑TCGGTCATGATTTTCTGATCCGCCGAACGGTTATCCAGCCCCACGCGCTTCACGTTTGCGGACTCGCCTTTACGGCAAATCAACTGGTGCTCGc < 2:692248/112‑1 (MQ=255)
tACCGCCA‑AAAAAAAACA‑TCGGTCATGATTTTCTGATCCGCCGAACGGTTATCCAGCCCCACGCGCTTCACGTTTGCGGACTCGCCTTTACGGCAAATCAACTGGTGCTCGc > 1:692248/1‑112 (MQ=255)
tACCGCCA‑AAAAAAAACA‑TCGGTCATGATTTTCTGATCCGCCGAACGGTTATCCAGCCCCACGCGCTTCACGTTTGCGGACTCGCCTTTACGGCAAATCAACTGGTGCTCGc > 1:395116/1‑112 (MQ=255)
tACCGCCA‑AAAAAAAACA‑TCGGTCATGATTTTCTGATCCGCCGAACGGTTATCCAGCCCCACGCGCTTCACGTTTGCGGACTCGCCTTTACGGCAAATCAACTGGTGCTCGCCAACGTAGGTGTGCGGCCCCAACTCCa > 2:298843/1‑139 (MQ=255)
tACCGCCA‑AAAAAAAACA‑TCGGTCATGATTTTCTGATCCGCCGAACGGTTATCCAGCCCCACGCGCTTCACGTTTGCGGACTCGCCTTTACGGCAAATCAACTGGTGCTCGCCAACGTAGGTGTGCGGCCCCAACTCCa > 1:481523/1‑139 (MQ=255)
tACCGCC‑‑AAAAAAAACA‑TCGGTCATGATTTTCTGATCCGCCGAACGGTTATCCAGCCCCACGCGCTTCACGTTTGCGGACTCGCCTTTACGGCAAATCAACTGGTGCTCGCCAACGTAGGTGTGCGGCCCCAACTCCAg > 1:1389902/1‑139 (MQ=255)
|
CGGCGTCGCCTCTAATCCCAGCATGGTCAGTTCGTTTTCCGCCACCACGTTCCAGATCACCGCATCGACATCGCCTTTAACAATGCGTTGTAAACTCTCGTGATAAGAGAGATCGACTCGTTCCACATCACTACCGCC‑‑AAAAAAAACA‑TCGGTCATGATTTTCTGATCCGCCGAACGGTTATCCAGCCCCACGCGCTTCACGTTTGCGGACTCGCCTTTACGGCAAATCAACTGGTGCTCGCCAACGTAGGTGTGCGGCCCCAACTCCAG > NC_000913/3511601‑3511870
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
