Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A44 F60 I1 R1	16	77.8	2642868	98.6%	2605867	138.9

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,815,883	+C	coding (667/687 nt)	rph ←	truncated RNase PH

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,815,879	1	.	C	96.2%	184.1 / 0.0	52	coding (671/687 nt)	rph	truncated RNase PH
Reads supporting (aligned to +/- strand): ref base . (1/1); new base C (19/31); total (20/32)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.94e-01

CAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCG‑ATT‑CCC‑CTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAG  >  NC_000913/3815741‑3816008

cAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGgattcg‑att‑c                                                                                                                                   <  1:121407/140‑1 (MQ=255)

cAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTACCAACGCAGCCTTCTGAGTCGATACAATGgattcg‑att‑c                                                                                                                                   >  2:513559/1‑140 (MQ=255)

cAATAAACGGGCGCTGATATGGGTTCATGCCTTCGCTCCGCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGgattcg‑att‑c                                                                                                                                   <  2:621871/140‑1 (MQ=255)

aaaTAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCGGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGgattcg‑att‑c                                                                                                                                   <  2:1283516/139‑1 (MQ=255)

     aaCTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCG‑ATT‑ccc‑cct                                                                                                                             <  1:1063347/140‑3 (MQ=255)

     aaCTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCG‑ATT‑ccc‑cct                                                                                                                             <  2:770283/140‑3 (MQ=255)

         ggCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCG‑ATTCCCC‑CTCggg                                                                                                                          >  1:679760/1‑140 (MQ=255)

          gcgcTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCG‑ATTCCCC‑CTCGGGc                                                                                                                         >  1:1074742/1‑140 (MQ=255)

          gcgcTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCG‑ATTCCCC‑CTCGGGc                                                                                                                         <  1:513559/140‑1 (MQ=255)

              tGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCG‑ATTCCCC‑CTCGGGCCaga                                                                                                                     <  2:1235900/140‑1 (MQ=255)

                atatGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCG‑ATTCCCC‑CTAGGGCCAGAGc                                                                                                                   >  2:41349/1‑140 (MQ=255)

                 tatGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCG‑ATTCCCC‑CTCGGGCCAGAGcc                                                                                                                  <  1:1062529/140‑1 (MQ=255)

                 tatGGTTTCATGCCTTCCCTCCCCATCTTACTTTTTTACAGACAAAAACAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCG‑ATTCCCC‑CTCGGGCCAGAGcc                                                                                                                  <  2:450566/140‑1 (MQ=255)

                       ttCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCG‑ATTCCCC‑CTCGGGCCAGAGCCAACAAg                                                                                                            <  2:864709/140‑1 (MQ=255)

                          aTGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCG‑ATTCCCC‑CTCGGGCCagag                                                                                                                    >  1:1122539/1‑129 (MQ=255)

                          aTGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCG‑ATTCCCC‑CTCGGGCCagag                                                                                                                    <  2:1122539/129‑1 (MQ=255)

                          aTGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCG‑ATTCCCC‑CTCGGGCCAGAGCCAACAAGATg                                                                                                         >  1:935615/1‑140 (MQ=255)

                             ccTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCG‑ATTCCCC‑CTCGGGCCAGAGCCAACAAGATGact                                                                                                      >  1:967448/1‑138 (MQ=255)

                               ttCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCG‑ATTCCCC‑CTCGGGCCAGAGCCAACAAGATGAGTAg                                                                                                    <  1:1189557/140‑1 (MQ=255)

                               ttCGCTCCTCATCTTACCTTTCGACAGACAACAAAAAGGTGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCG‑ATTCCCC‑CTCGGGCCAGAGCCAACAAGATGAGTAg                                                                                                    <  2:368830/140‑1 (MQ=255)

                                tCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCG‑ATTCCCC‑CTCGGGCCagag                                                                                                                    >  1:1201590/1‑123 (MQ=255)

                                tCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCG‑ATTCCCC‑CTCGGGCCagag                                                                                                                    <  2:1201590/123‑1 (MQ=255)

                                tCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTAG‑ATT‑CCCGCTCAGGGCAGAGCGAACAAGATGAGTAGc                                                                                                   >  1:345329/1‑140 (MQ=255)

                                 cGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCG‑ATTCCCC‑CTCGGGCCAGAGCCAACAAGATGAGTAGct                                                                                                  >  2:267105/1‑140 (MQ=255)

                                              aCTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCG‑ATTCCCC‑CTCGGTCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGaa                                                                                     >  1:400651/1‑140 (MQ=255)

                                                  ttCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCG‑ATTCCCC‑CTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGc                                                                                 <  1:1065077/140‑1 (MQ=255)

                                                  ttCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCG‑ATTCCCC‑CTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGc                                                                                 <  1:183624/140‑1 (MQ=255)

                                                     tACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCG‑ATTCCCC‑CTCGGGCCAGAGCCAACAAGATGAGTAGCTCtt                                                                                               >  1:796161/1‑123 (MQ=255)

                                                     tACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCG‑ATTCCCC‑CTCGGGCCAGAGCAAACAAGATGAGTAGCTCtt                                                                                               <  2:796161/123‑1 (MQ=255)

                                                       cAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCG‑ATTCCCC‑CTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGcc                                                                            <  1:267105/140‑1 (MQ=255)

                                                        aGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCG‑ATTCCCC‑CTCGGGCCAGAGCCAACTAGATGAGAAGCTCTTCATGGGTGAACGGCTCGCCt                                                                           >  1:25482/1‑140 (MQ=255)

                                                          aCAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCG‑ATTCCCC‑CTCGGGCCAGAGCCAACTAGATGAGCAGCACTACATGGGGGAACGGCTCGCCTTc                                                                         >  1:366196/1‑140 (MQ=255)

                                                          aCAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCG‑ATTCCCC‑CTCGGGCCAGAGCCAACAAGATGAGGAGCTCTGCATGGGTGAACGGCTCGCCTTc                                                                         >  1:404112/1‑140 (MQ=255)

                                                            aaaaaaaaGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCG‑ATTCCCC‑CTCGGGCCAGAGCCAACAAGATGAGTAACTCGTCATGGGTGAACGGCTCGCCTTCTg                                                                       >  1:491894/1‑140 (MQ=255)

                                                            aaaaaaaaGGCGACTCACCAGTGGCCTTAAAAATCAGTTTGCCAGCGCTGCCTTCTGCGTCGCTACAATGGATTCG‑ATTCCCC‑CTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTg                                                                       <  2:491894/140‑1 (MQ=255)

                                                              aaaaaaGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCG‑ATTCCCC‑CTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGcc                                                                     <  1:995748/140‑1 (MQ=255)

                                                                    ggCGACTCATCAGTCACCTTAATAAGCAGATTGCCAGTGCCGCCTTCTGCGTCGCTACAATGGATTCG‑ATTCCCC‑CTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTcccc                                                               <  1:629195/140‑1 (MQ=255)

                                                                     gCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCG‑ATTCCCC‑CTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCt                                                              <  2:679760/140‑1 (MQ=255)

                                                                      cGACTCATCAGTCGCCTTAAAACTCAGTTTGCCAGCGCCCCCTTCTGCCTCGCTACAATGGATTCG‑ATTCCCC‑CTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTg                                                             <  2:562681/140‑1 (MQ=255)

                                                                      cGACTCATCAGTCGCCTGAAAACTCAGTTTGTCAGTGCCCCCTTCTGCTTCGCTACAATGGATTCG‑ATTCCCC‑CTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTg                                                             <  2:366196/140‑1 (MQ=255)

                                                                      cGACTCATCAGTCGCATTAAAAATCGGTTGGCCAGCGGCGCCTTCTGCGTCGCTACAATGGATTCG‑ATTCCCC‑CTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTg                                                             <  1:492359/140‑1 (MQ=255)

                                                                                   gCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCG‑ATTCCCC‑CTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAatgatg                                                >  1:1247302/1‑140 (MQ=255)

                                                                                   gCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCG‑ATTCCCC‑CTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAatgatg                                                >  2:823050/1‑140 (MQ=255)

                                                                                   gCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCG‑ATTCCCC‑CTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAatgatg                                                >  1:750666/1‑140 (MQ=255)

                                                                                      ttAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCG‑ATTCCCC‑CTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATgcgc                                             <  1:823050/140‑1 (MQ=255)

                                                                                              cAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCG‑ATTCCCC‑CTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTc                                     <  2:1247302/140‑1 (MQ=255)

                                                                                                      cAGCGCCGCCTTCTGCGTCGCTACAATGGATTCG‑ATTCCCC‑CTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGtcatca                             >  2:123827/1‑140 (MQ=255)

                                                                                                       aGCGCCGCCTTCTGCGTCGCTACAATGGATTCG‑ATTCCCC‑CTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCAc                            <  1:41349/140‑1 (MQ=255)

                                                                                                       aGCGCCCCCTTCTGCGTCGCTACAATGGATTCG‑ATTCCCC‑CTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCAc                            <  2:1151785/140‑1 (MQ=255)

                                                                                                           ccgccTTCTGCGTCGCTACAATGGATTCG‑ATTCCCC‑CTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACg                        <  2:750666/140‑1 (MQ=255)

                                                                                                            cgccTTCTGCGTCGCTACAATGGATTCG‑ATTCCCC‑CTCGGGCCAGAGCCAACTAGATGAGAAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGt                       <  2:25482/140‑1 (MQ=255)

                                                                                                            cgccTTCTGCGTCGCTACAATGGATTCG‑ATTCCCC‑CTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGt                       <  2:1074742/140‑1 (MQ=255)

                                                                                                              ccTTCTGCGTCGCTACAATGGATTCG‑ATTCCCC‑CTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGt                                  <  1:231946/127‑1 (MQ=255)

                                                                                                              ccTTCTGCGTCGCTACAATGGATTCG‑ATTCCCC‑CTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGt                                  >  2:231946/1‑127 (MQ=255)

                                                                                                                ttCTGCGTCGCTACAGTGGATTCGAATC‑CCC‑CTCGGGGCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCAt                   <  1:435686/140‑1 (MQ=255)

                                                                                                                   tGCGTCGCTACAATGGATTCG‑ATTCCCC‑CTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTc                >  1:1316780/1‑140 (MQ=255)

                                                                                                                      gTCGCTACAATGGATTCG‑ATTCCCC‑CTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGTTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGt             <  2:1174580/140‑1 (MQ=255)

                                                                                                                        cGCTACAATGGATTCG‑ATTCCCC‑CTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGtct           >  1:288327/1‑140 (MQ=255)

                                                                                                                                 ggATTCG‑ATTCCCC‑CTCTGGCCTGAGCCAACTAGATGAGAAGCTCTTCCTGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCCGCGGCag  <  2:345329/140‑1 (MQ=255)

                                                                                                                                 ggATTCG‑ATTCCCC‑CTCGGGCCTGAGCCAACGAGAGGAGGAGCTCTTCTTGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCag  <  2:404112/140‑1 (MQ=255)

                                                                                                                                  gattcg‑attcCCC‑CTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCa   >  1:331652/1‑138 (MQ=255)

                                                                                                                                  gattcg‑attcCCC‑CTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCa   <  2:331652/138‑1 (MQ=255)

                                                                                                                                     tcg‑attcCCC‑CTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGc    <  2:1194123/134‑1 (MQ=255)

                                                                                                                                     tcg‑attcCCC‑CTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGc    >  1:1194123/1‑134 (MQ=255)

CAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCG‑ATT‑CCC‑CTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAG  >  NC_000913/3815741‑3816008

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A