Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A32 F60 I1 R1
|
14 |
677.5 |
22846932 |
98.6% |
22527074 |
139.4 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,815,883 |
+C |
coding (667/687 nt) |
rph ← |
truncated RNase PH |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,815,879 | 1 | . | C | 94.5%
| 1597.4
/ 63.4
| 440 | coding (671/687 nt) | rph | truncated RNase PH |
| Reads supporting (aligned to +/- strand): ref base . (16/8); new base C (174/242); total (190/250) |
| Fisher's exact test for biased strand distribution p-value = 1.99e-02 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 508 total aligned reads displayed.
TCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGAC‑AAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGA‑T‑T‑C‑C‑CC‑TCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTC > NC_000913/3815740‑3816012
|
cAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGAC‑AAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGgattcga‑t‑t‑c < 2:2660543/140‑1 (MQ=255)
cAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGAC‑AAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGgattcga‑t‑t‑c < 2:1535738/140‑1 (MQ=255)
aTAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGAC‑AAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCATCTACGGCGCTACGATGGATTCGA‑T‑T‑c‑c‑c > 1:2987702/1‑140 (MQ=255)
aTAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCGACAGAC‑AAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGA‑T‑T‑c‑c‑c < 2:11048015/140‑1 (MQ=255)
cTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGAC‑AAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGA‑T‑T‑c‑c‑ccctcg > 1:9897799/1‑136 (MQ=255)
cTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGAC‑AAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGA‑T‑T‑c‑c‑ccct > 1:2742473/1‑136 (MQ=255)
ggCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGAC‑AAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGA‑T‑TCC‑C‑CC‑TCggg > 1:8943202/1‑140 (MQ=255)
ggCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGAC‑AAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGA‑T‑TCC‑C‑CC‑TCggg > 1:1840695/1‑140 (MQ=255)
ggCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGAC‑AAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGCCGCTACAATGGATACGA‑T‑TCC‑C‑CC‑TCggg > 2:10468091/1‑140 (MQ=255)
ggCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGAC‑AAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTACCAGCGCCTCCTACTGAGTCGCTACAATGGACTCGA‑T‑T‑CGC‑CC‑TCggg > 2:5190027/1‑140 (MQ=255)
gcgcTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGAC‑AAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGA‑T‑TCC‑C‑CC‑TCGGGc < 1:1644925/140‑1 (MQ=255)
gcgcTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGAC‑AAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGA‑T‑TCC‑C‑CC‑TCGGGc > 1:2190486/1‑140 (MQ=255)
cgcTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGA‑T‑TCC‑C‑CC‑TCGGGc > 1:10449569/1‑140 (MQ=255)
cgcTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGAC‑AAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGA‑T‑TCC‑C‑CC‑TCGGGcc > 1:506904/1‑140 (MQ=255)
gATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGAC‑AAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGA‑T‑TCC‑C‑CC‑TCGGGCCagag < 1:960708/140‑1 (MQ=255)
gATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGAC‑AAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGA‑T‑TCC‑C‑CC‑TCGGGCCagag < 1:2662892/140‑1 (MQ=255)
atGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTATAGAC‑AAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGA‑T‑TCC‑C‑CC‑TCGGGCCAGAGCca < 1:3190030/140‑1 (MQ=255)
ggTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGAC‑AAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGA‑T‑TCC‑C‑CC‑TCGGGCCAGAGCcaac < 1:7881443/140‑1 (MQ=255)
aTGCCTTCGCTCCTCATCTTACTTTTCTACAGAC‑AAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGGGTCGCTACCATGGATTCGA‑T‑T‑C‑C‑CCTTCGGCCCAGAGCCAACAAGATg > 2:4418011/1‑140 (MQ=255)
aTGCCTTCGCTCCTCATCTTACTTTTCTACAGAC‑AAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGA‑T‑TCC‑C‑CC‑TCGGGCCAGAGCCAACAAGacg > 1:1167126/1‑138 (MQ=255)
aTGCCTTCGCTCCTCATCTTACTTTTCTACAGAC‑AAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGA‑T‑TCC‑C‑CC‑TCGGGCCAGAGCCAACAAGATg > 1:9070401/1‑140 (MQ=255)
aTGCCTTCGCTCCTCATCTTACTTTTCTACAGAC‑AAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGA‑T‑TCC‑C‑CC‑TCGGGCCAGAGCCAACAAGATg > 2:7818580/1‑140 (MQ=255)
aTGCCTTCGCTCCTCATCTTACTTTTCTACAGAC‑AAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAAAGGATTCGG‑T‑T‑C‑C‑CCATCGGGCCAGAGCCAACAAGATg > 1:4182293/1‑140 (MQ=255)
gCCTTCGCTCCTCATCTTACTTTTCTACAGAC‑AAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGA‑T‑TCC‑C‑CC‑TCGGGCCAGAGCCAACAAGATGAg < 1:1966953/140‑1 (MQ=255)
gCCTTCGCTCCTCATCTTACTTTTCTACAGAC‑AAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGA‑T‑TCC‑C‑CC‑TCGGGCCAGAGCCAACAAGATGAg < 1:5694836/140‑1 (MQ=255)
ccTTCGCTCCTCATCTTTCTTTTCTACAGAC‑AAAAAAAAGGCGACTCAGCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGA‑T‑TCC‑C‑CC‑TCGGGCCAGAGCCAACAAGATGAGt < 2:4988024/140‑1 (MQ=255)
ccTTCGCTCCTCATCTTACTTTTCTACAGAC‑AAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGA‑T‑TCC‑C‑CC‑TCGGGCCAGAGCCAACAAGATGAGt < 2:7250705/140‑1 (MQ=255)
ttCGCTCCTCATCTTACTTTTCTACAGAC‑AAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGA‑T‑TCC‑C‑CC‑TCGGGCCAGAGCCAACAAGATGAGTAg < 2:917355/140‑1 (MQ=255)
ttCGCTCCTCATCTTACTTTTCTACAGAC‑AAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGA‑T‑TCC‑C‑CC‑TCGGGCCAGAGCCAACAAGATGAGTAg > 1:7469042/1‑140 (MQ=255)
ttCGCTCCTCATCTTACTTTTCTACAGAC‑AAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGA‑T‑TCC‑C‑CC‑TCGGGCCAGAGCCAACAAGATGAGTAg < 2:7516751/140‑1 (MQ=255)
ttCGCTCCTCATCTTACTTTTCCACAGAC‑AAAAAACAGGGGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGA‑T‑TCC‑C‑CC‑TCGGGCCAGAGCCAACAAGATGAGTAg < 2:3909497/140‑1 (MQ=255)
ttCGCTCCTCATCTTAATTTTCGACAGAC‑AATATAAAGGCGACTCATCTGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGA‑T‑TCC‑C‑CC‑TCGGGCCAGAGCCAACAAGATGAGTAg < 2:5587183/140‑1 (MQ=255)
ttCGCTCCTCAGCTTACATTTCTACAGAC‑AAAAAACAGGCGACTCACCCGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGA‑T‑TCC‑C‑CC‑TCGGGCCAGAGCCAACAAGATGAGTAg < 2:3519006/140‑1 (MQ=255)
ttACTTTTCTACAGAC‑AAAAAAAAGGCGACTCATCAGACGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGA‑T‑TCC‑C‑CC‑TCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTg < 1:3893515/140‑1 (MQ=255)
ttCTACAGAC‑AAAAAAAAGGCGTCTCATCTGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGA‑T‑TCC‑C‑CC‑TCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGc < 1:4009597/140‑1 (MQ=255)
cTACAGAC‑AAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGA‑T‑TCC‑C‑CC‑TCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTc < 2:6565543/140‑1 (MQ=255)
tACAGAC‑AAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGA‑T‑TCC‑C‑CC‑TCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGcac < 2:8984916/139‑3 (MQ=255)
tACAGAC‑AAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGA‑T‑TCC‑C‑CC‑TCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCg > 1:8444203/1‑140 (MQ=255)
cAGAC‑AAAAAAAAGGCGCCACACCAGTCGCCTTAAAAATCAGTTTGCCCGCGCCGCCTTCTGCGTCGCTACAATGGATTCGA‑T‑TCC‑C‑CC‑TCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGcc < 2:2962171/140‑1 (MQ=255)
cAGAC‑AAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGA‑T‑TCC‑C‑CC‑TCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGcc < 1:7671310/140‑1 (MQ=255)
aC‑AAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGA‑T‑TCC‑C‑CC‑TCGGGCCAGAGCCACCAAAATGGGTAGCTCTACATGAGTGAACGGCTCGCCTTc > 2:3776510/1‑140 (MQ=255)
aC‑AAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGA‑T‑TCC‑C‑CC‑TCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTc > 1:6018260/1‑140 (MQ=255)
aGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATT‑T‑C‑C‑CC‑TCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTccc < 2:10237221/140‑1 (MQ=255)
ggCGACTCATCAGTCGCGTTAAAAATCAGTTAGCCTGCGCCGCCTTCTTCGTCGCTACAATGGATTCGA‑T‑TCC‑C‑CC‑TCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTcccc < 2:4297357/140‑1 (MQ=255)
ggCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGA‑T‑TCC‑C‑CC‑TCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTcccc > 1:154146/1‑140 (MQ=255)
cGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGA‑T‑TCC‑C‑CC‑TCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTg > 1:10629084/1‑140 (MQ=255)
cGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGA‑T‑TCC‑C‑CC‑TCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTg < 2:8450758/140‑1 (MQ=255)
cGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGA‑T‑TCC‑C‑CC‑TCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTg < 2:226671/140‑1 (MQ=255)
cGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGA‑T‑TCC‑C‑CC‑TCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTg < 1:5636065/140‑1 (MQ=255)
cGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGA‑T‑TCC‑C‑CC‑TCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTg < 2:10111253/140‑1 (MQ=255)
cGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGA‑T‑TCC‑C‑CC‑TCGGGCCAGAGCCAACAAGATGAGTAGCGCTTCATGGGTGAACAGCTCGCGTTCTGCCGTCCCCTg > 1:3806546/1‑140 (MQ=255)
tCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGA‑T‑TCC‑C‑CC‑TCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTccc < 2:1182780/126‑1 (MQ=255)
gCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGA‑T‑TCC‑C‑CC‑TCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAGCGGCTCGACTTATGCCGTCCCATGCACTTCAatgatg > 1:4789756/1‑140 (MQ=255)
gCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGA‑T‑TCC‑C‑CC‑TCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAatgatg > 1:679028/1‑140 (MQ=255)
gCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGA‑T‑TCC‑C‑CC‑TCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAatgatg > 1:1230252/1‑140 (MQ=255)
gCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGA‑T‑TCC‑C‑CC‑TCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAatgatg > 2:8349124/1‑140 (MQ=255)
gCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGA‑T‑TCC‑C‑CC‑TCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAatgatg > 2:1357798/1‑140 (MQ=255)
gCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGA‑T‑TCC‑C‑CC‑TCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAatgatg > 1:11354952/1‑140 (MQ=255)
gCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGA‑T‑TCC‑C‑CC‑TCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAatgatg > 2:463831/1‑140 (MQ=255)
gCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGA‑T‑TCC‑C‑CC‑TCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAatgatg > 1:10000290/1‑140 (MQ=255)
gCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGA‑T‑TCC‑C‑CC‑TCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGACTTTTGGCGTCCCATGCACTTCAatgatg > 1:3355833/1‑140 (MQ=255)
ccTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGA‑T‑TCC‑C‑CC‑TCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATgc > 1:7214144/1‑140 (MQ=255)
ccTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGA‑T‑TCC‑C‑CC‑TCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATgc > 1:7008950/1‑140 (MQ=255)
cTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGA‑T‑TCC‑C‑CC‑TCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATgcg < 2:9070401/140‑1 (MQ=255)
ttAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGA‑T‑TCC‑C‑CC‑TCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATgcgc < 2:9560442/140‑1 (MQ=255)
ttAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGA‑T‑TCC‑C‑CC‑TCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATgcgc < 2:5719026/140‑1 (MQ=255)
aGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTGGA‑T‑T‑C‑C‑CC‑TCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCgg > 2:8864413/1‑140 (MQ=255)
aGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGA‑T‑TCC‑C‑CC‑TCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCg < 2:10539911/140‑1 (MQ=255)
gTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGA‑T‑TCC‑C‑CC‑TCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCgg < 1:10161395/140‑1 (MQ=255)
tttGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGA‑T‑TCC‑C‑CC‑TCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGt < 1:44168/140‑1 (MQ=255)
tttGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGA‑T‑TCC‑C‑CC‑TCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGt < 2:1626462/140‑1 (MQ=255)
tttGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGA‑T‑TCC‑C‑CC‑TCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGt < 1:8824309/140‑1 (MQ=255)
tttGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGA‑T‑TCC‑C‑CC‑TCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGt < 2:679028/140‑1 (MQ=255)
tGCCAGCGCCGCCTTCTGCGTCCCTACAACGGATTCGC‑T‑TCC‑C‑CC‑TCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGtca < 1:3666503/140‑1 (MQ=255)
tGCCAGCGCCGCCTTCTACGTCACTACAATGGATTCGA‑TCC‑C‑C‑CC‑TCGTGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGtca < 2:3190850/140‑1 (MQ=255)
gCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTTGA‑T‑TCC‑C‑CC‑TCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGtc < 1:9313878/138‑1 (MQ=255)
gCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGA‑T‑TCC‑C‑CC‑TCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGtc > 2:2504672/1‑138 (MQ=255)
gCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGA‑T‑TCC‑C‑CC‑TCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGtc < 1:2504672/138‑1 (MQ=255)
gcgcCGCCTTCTGCGTCGCTACAATGGATTCGA‑T‑TCC‑C‑CC‑TCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACt < 1:6586194/140‑1 (MQ=255)
gcgcCGCCTTCTGCGTCGCTACAATGGATTCGA‑T‑TCC‑C‑CC‑TCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACt < 2:6430496/140‑1 (MQ=255)
gcgcCGCCTTCTGCGACGCTACAATGGATTCGA‑T‑T‑C‑CTCC‑TCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACt < 1:4664291/140‑1 (MQ=255)
ccgccTTCTGCGTCGCTACAATGGATTCGA‑T‑TCC‑C‑CC‑TCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCAc > 1:6195348/1‑136 (MQ=255)
ccgccTTCTGCGTCGCTACAATGGATTCGA‑T‑TCC‑C‑CC‑TCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCAc < 2:6195348/136‑1 (MQ=255)
gccTTCTGCGTCGCTACAATGGATTCGA‑T‑TCC‑C‑CC‑TCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGTCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGtt < 2:11216676/140‑1 (MQ=255)
tGCGTCGCTACAATGGATTCGA‑T‑TCC‑C‑CC‑TCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTc > 2:2846410/1‑135 (MQ=255)
gTCGCTACAATGGATTCGA‑T‑TCC‑C‑CC‑TCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGt < 2:209434/140‑1 (MQ=255)
cGCTACAATGGATTCGA‑T‑TCC‑C‑CC‑TCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGtct > 2:9334891/1‑140 (MQ=255)
gCTACAATGGATTCGA‑T‑TCC‑C‑CC‑TCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGtctc > 1:9541206/1‑140 (MQ=255)
cTACAATGGATTCGA‑T‑TCC‑C‑CC‑TCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCTCGTGTTCGGTCAACACTGCGTTCATGTCGGTctct > 2:4789633/1‑140 (MQ=255)
cTACAATGGATTCGA‑T‑TCC‑C‑CC‑TCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTctct > 1:8206197/1‑140 (MQ=255)
tACAATGGATTCGA‑T‑TCC‑C‑CC‑TCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTg < 2:9830923/140‑1 (MQ=255)
tGGATTCGA‑T‑TCC‑C‑CC‑TCGGGCCAGAGCCAACAAGCTGACTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCa < 2:4182293/140‑1 (MQ=255)
tGGATTCGA‑T‑TCC‑C‑CC‑TCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCa > 1:6290954/1‑140 (MQ=255)
tGGATTCGA‑T‑TCC‑C‑CC‑TCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCa > 2:8079199/1‑140 (MQ=255)
tGGATTCGA‑T‑TCC‑C‑CC‑TCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCa < 2:1854845/140‑1 (MQ=255)
gattcga‑t‑tcC‑C‑CC‑TCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCaga < 2:10781773/140‑1 (MQ=255)
gattcga‑t‑tcC‑C‑CC‑TCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCaga > 1:1105151/1‑140 (MQ=255)
tcga‑t‑tcC‑C‑CC‑TCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTc < 2:7008950/140‑1 (MQ=255)
tcga‑t‑tcC‑C‑CC‑TCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTc > 2:8541285/1‑140 (MQ=255)
tcga‑t‑tcC‑C‑CC‑TCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGATCGTGTCGGACTCTGCGGCAGAGTc > 1:5284008/1‑140 (MQ=255)
|
TCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGAC‑AAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGA‑T‑T‑C‑C‑CC‑TCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTC > NC_000913/3815740‑3816012
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
