Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F60 I0 R1 465 320.4 10502068 95.5% 10029474 149.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP009273 2,463,915 C→A 10.8% Q436K (CAA→AAA)  gtrS → serotype‑specific glucosyl transferase, CPS‑53 (KpLE1) prophage

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0092732,463,9150CA10.8% 458.0 / 8.0 141Q436K (CAA→AAA) gtrSserotype‑specific glucosyl transferase, CPS‑53 (KpLE1) prophage
Reads supporting (aligned to +/- strand):  ref base C (39/81);  new base A (19/2);  total (58/83)
Fisher's exact test for biased strand distribution p-value = 6.09e-07
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 143 total aligned reads displayed.

GGAATATCTCAATTTTATGTGTCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAG‑TTTAAATT‑GCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCGGTATTGACTATCAAATGCCCTGATTCG  >  CP009273/2463774‑2464063
                                                                                                                                             |                                                                                                                                                      
ggAATATCTCAATTTTATGTGTCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACaa                                                                                                                                                 <  1:4615691/149‑1 (MQ=255)
ggAATATCTCAATTTTATGTGTCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACaa                                                                                                                                                 <  1:2155557/149‑1 (MQ=255)
 gAATATCTCAATTTTATGTGTCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTGTTTTTTATTTTTTAAATAAATAAAATAAATAAAAAAAAt                                                                                                                                                >  1:1020497/1‑149 (MQ=255)
   atatCTCAATTTTATGTGTCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAg                                                                                                                                              <  2:142724/149‑1 (MQ=255)
      tctcAATTTTATGTGTCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGa                                                                                                                                           <  1:4056225/149‑1 (MQ=255)
       ctcAATTTTATGTGTCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGAt                                                                                                                                          <  2:5232815/149‑1 (MQ=255)
       ctcAATTTTATGTGTCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGAt                                                                                                                                          <  1:486291/149‑1 (MQ=255)
        tcAATTTTATGTGTCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATg                                                                                                                                         <  1:3401966/149‑1 (MQ=255)
           aTTTTATGTGTCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCGAGACAATAGCGATGTaa                                                                                                                                      <  2:1080454/149‑1 (MQ=255)
              ttATGTGTCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGc                                                                                                                                   <  2:3765403/149‑1 (MQ=255)
              ttATGTGTCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGc                                                                                                                                   <  2:1587317/149‑1 (MQ=255)
                 tgtgTCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAAATTATTAAAAAAATAAAAAAAAAAAAAAAAATAAAGATCTaaaaaaat                                                                                                                                >  1:5034135/1‑144 (MQ=255)
                   tgtCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTTATTTATAAAAAAATTAAAAAAAAAAAATAAAAAATCCATGTAAAGCACTaa                                                                                                                              >  2:630666/1‑149 (MQ=255)
                    gtCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAAATAAAAGAAATAAATACAAAAGCGATTTAAATCACaaaa                                                                                                                             >  2:1288600/1‑148 (MQ=255)
                           ttCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAG‑TTTAAAt                                                                                                                     <  2:3974055/149‑1 (MQ=255)
                            tCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAG‑TTTAAAtt                                                                                                                    <  2:1722213/149‑1 (MQ=255)
                              ggggAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTTATTTATAAAATAAATAAAAAAAAAAAAAAAAAAAACGATGTTAATAACAAAA‑TTTAAAttta                                                                                                                  >  2:3167704/1‑147 (MQ=255)
                              ggggAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAG‑TTTAAATT‑gc                                                                                                                 <  2:3942446/149‑1 (MQ=255)
                              ggggAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAG‑TTTAAATT‑gc                                                                                                                 <  2:961832/149‑1 (MQ=255)
                                ggAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAAAAAATAAAAAAAAAAAAAACAAAAACCAAGTAAAGCACAAAG‑ATTAAAAT‑gcgc                                                                                                               >  1:3926308/1‑149 (MQ=255)
                                    ggATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTTATTTTTTAAATAATTCAAATAAAAAAAGACCAAATCGATGTGAATCACGAAG‑TTTTATTT‑TAGCGccc                                                                                                           >  2:3682232/1‑148 (MQ=255)
                                    ggATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAAAAAACAAGAAAAAATCGATTTAAAGCACAAAT‑TTTAAATT‑GCGCGCCa                                                                                                           >  2:2588487/1‑149 (MQ=255)
                                     gATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAG‑TTTAAATT‑GCGCGCCaa                                                                                                          <  1:4590268/149‑1 (MQ=255)
                                      atatAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAG‑TTTAAATT‑GCGCGCCAAt                                                                                                         <  1:2346623/149‑1 (MQ=255)
                                        ataGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAG‑TTTAAATT‑GCGCGCCAATCa                                                                                                       <  2:5097806/149‑1 (MQ=255)
                                        ataGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAAAAATTAAAATAAAACAAAAAAAAAGCCATGTAAAGAACAAAG‑ATTAAATT‑TAGCGcccaaca                                                                                                       >  1:4347336/1‑144 (MQ=255)
                                         taGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAG‑TTTAAATT‑GCGCGCCAATCAt                                                                                                      <  1:2023544/149‑1 (MQ=255)
                                         taGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAG‑TTTAAATT‑GCGCGCCAATCAt                                                                                                      <  1:5201715/149‑1 (MQ=255)
                                                       atattttttttGGATTTTTTTTTTCGTTCTACTTTTTCTTATAAATAACTTTTTTTTTTTTATTTTATAAATTAATTAAAATAAATAAATACAATCGCTATGTAAAGAACTAAT‑TTTAATTT‑GCGCGCAAATCATGGCGCGCACAAGCt                                                                                        <  1:34759/145‑1 (MQ=255)
                                                              atttGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTTTAAAATAATTAAAAGAAATAAAGAAAAAATCGATGTTAAGCACAAAG‑TTTAAATT‑TCTCGCCAATCATGGCGCGCACAAGCGaaaataa                                                                                 >  2:4512287/1‑148 (MQ=255)
                                                              atttGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAG‑TTTAAATT‑GCGCGCCAATCATGGCGCGCACAAGCTATAATAc                                                                                 <  1:3458936/149‑1 (MQ=255)
                                                                  ggAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAAATAAAAGAAATAAAGACAATATCGATGTAAATCACTAAG‑TTTAAATT‑TCGCGCCCAACATGGCGCGCACAAGCGATAATACCaaa                                                                             >  2:3451866/1‑148 (MQ=255)
                                                                     aTGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAG‑TTTAAATT‑GCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTa                                                                          <  2:861947/149‑1 (MQ=255)
                                                                       gTATTTTTCTTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAG‑TTTAAATT‑GCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAAt                                                                        <  2:1576167/149‑1 (MQ=255)
                                                                        tATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTGTTTTTTATTTATAAAATAAAAAAAAAAAAAAAAAAAAAAAACGATGGTAAACAAAAAGTTTTAAATTAGCGC‑CCCACCAT‑GCGCGCCCAAGCAATAATAACaaaaacaaa                                                                       >  1:2170122/1‑142 (MQ=255)
                                                                         aTTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAG‑TTTAAATT‑GCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAAttt                                                                      <  2:3325242/149‑1 (MQ=255)
                                                                            tttCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAG‑TTTAAATT‑GCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTtctc                                                                   <  2:1081100/149‑1 (MQ=255)
                                                                                 ttcgACCTTTGCTTATACATAACAGTCTTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAG‑TTTAAATT‑GCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTctcctcct                                                              <  1:5122304/149‑1 (MQ=255)
                                                                                  tcgACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAG‑TTTAAATT‑GCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTctcctcctc                                                             <  2:3829259/149‑1 (MQ=255)
                                                                                  tcgACCTTTGATTATACATAACAGTCTTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAG‑TTTAAATT‑GCGCGCCAATCTTGGCGCGCACAAGCTATAATACCAACCTAATTTctcctcctc                                                             <  2:463548/149‑1 (MQ=255)
                                                                                  tcgACCTTTGATTATACATAACAGTCTTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAG‑TTTAAATT‑GCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTctcctcctc                                                             <  1:861757/149‑1 (MQ=255)
                                                                                  tcgACCTTTGATTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAATAAATCAAGACAATAGCGATTTAAAGCACTAAG‑TTTAAATT‑GCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTctcctcctc                                                             <  1:4219416/149‑1 (MQ=255)
                                                                                    gACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAG‑TTTAAATT‑GCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCtt                                                           <  2:491805/149‑1 (MQ=255)
                                                                                     aCCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAATAAATCAAGACAATATCGATGTAAATCACTAAG‑TTTTAATT‑TAGCGCCAATCATGGCGCGCACAAGCTCTAAAAACAAACACAAATATCCTCCTCTTa                                                          >  2:4327172/1‑149 (MQ=255)
                                                                                        tttGCTTATACATAACAGTCTTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAG‑TTTAAATT‑GCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTagag                                                       <  2:4681704/149‑1 (MQ=255)
                                                                                        tttGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAG‑TTTAAATT‑GCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTagag                                                       <  2:4794168/149‑1 (MQ=255)
                                                                                          tgattATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAG‑TTTAAATT‑GCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTg                                                     <  2:3839075/146‑1 (MQ=255)
                                                                                            attATACATAACATTGTTTTTTTTAATTTATAAAATAATTCAAATAAATCAAGACAATAGCGATGTAAAGAACTATT‑TTTAAAGT‑GCGCCCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGAc                                                   <  1:4853831/148‑1 (MQ=255)
                                                                                              tataCATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAG‑TTTAAATT‑GCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACta                                                 <  2:5034135/149‑1 (MQ=255)
                                                                                               ataCATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAG‑TTTAAATT‑GCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACtat                                                <  2:1331892/149‑1 (MQ=255)
                                                                                                taCATAACAGTCGTTTTTTTTATTTATAAAAAAATTGAAAAAAATAAAAAAAAAATCGATGTTAATCAATAAG‑TTTAAATT‑TGGCGCCAATCAAGGCGCGCCCAAGCAATAATAACAACAAAAATTATACTCCACTTATAGttaataaa                                               >  2:2540903/1‑142 (MQ=255)
                                                                                                taCATAACAGTCGTTTTTTTAATTTATAAAATAATTAAAAGAAATAAAGAAAAAAGCGATGTAAAGCAATAAG‑TTTAAATT‑TCGCGCCAAACATTGCGCGCACCAGCTATAAAACCAACCAAAATTCTACAACTAGTAGAGTGAAtaaa                                               >  2:2540743/1‑147 (MQ=255)
                                                                                                   aTAACAGTCTTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAG‑TTTAAATT‑GCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATAtct                                            <  1:3660948/149‑1 (MQ=255)
                                                                                                    tAACAGTCGTTTTTTTAATTTATAAAATATTTAAAAGAAATCAAGAAAATAGCGATGTAAAGCACTAAG‑TTTAATTT‑GCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATAtctc                                           <  1:4967161/149‑1 (MQ=255)
                                                                                                         gTCGTTTTTTTAATTTATAAAATAATTAAAAGAAAACAAGACAATAGCGATGTAAAGCACTAAG‑TTTAAATT‑TCGCGCCAATCATGGCGCGCACAAGCTATAATACCAAACTAATTTCTCCTCCTCTTAGAGTGACTATATCTACTGAt                                      >  2:263307/1‑149 (MQ=255)
                                                                                                          tCGTTTTTTTAATTTATAAAATAATTCAAATAAATAAAGAAAAAAGCGATGTAAAGCACTAAG‑TTTAAATT‑GCGCGGCAATCCTGGCGCGCACAAGCTATAATAACAACCAAATTTATCCTCCGCTTATAGTGACTAAATATACTGATa                                     >  1:1202815/1‑149 (MQ=255)
                                                                                                            gTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAG‑TTTAAATT‑GCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGa                                   >  2:1159792/1‑149 (MQ=255)
                                                                                                             tttttttAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAG‑TTTAAATT‑GCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGaa                                  >  2:3517689/1‑149 (MQ=255)
                                                                                                              ttttttAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAG‑TTTAAATT‑GCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAAt                                 <  1:3054399/149‑1 (MQ=255)
                                                                                                              ttttttAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAG‑TTTAAATT‑GCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAAt                                 <  2:4624779/149‑1 (MQ=255)
                                                                                                                  ttAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCTATGTAAAGCACTAAG‑TTTAAATT‑GCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCg                             <  1:2991177/149‑1 (MQ=255)
                                                                                                                   tAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAG‑TTTAAATT‑GCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCgg                            <  2:1974531/149‑1 (MQ=255)
                                                                                                                   tAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAG‑TTTAAATT‑GCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCgg                            <  1:5111174/149‑1 (MQ=255)
                                                                                                                    aaTTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAG‑TTTAAATT‑GCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCGGt                           >  2:4700779/1‑149 (MQ=255)
                                                                                                                    aaTTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAG‑TTTAAATT‑GCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCGGt                           >  2:2085801/1‑149 (MQ=255)
                                                                                                                    aaTTTATAAAATAATACAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAG‑TTTAAATT‑GCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCGGt                           <  1:5165077/149‑1 (MQ=255)
                                                                                                                         ataAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAG‑TTTAAATT‑GCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCGGTATTGa                      <  2:486876/149‑1 (MQ=255)
                                                                                                                          taAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAG‑TTTAAATT‑GCGCGCCACTCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCGGTATTGAc                     >  1:559542/1‑149 (MQ=255)
                                                                                                                          taAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAG‑TTTAAATT‑GCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCGGTATTGAc                     >  1:560782/1‑149 (MQ=255)
                                                                                                                            aaaTAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAG‑TTTAAATT‑GCGCGCCACTCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCGGTATTGACTa                   >  1:3785609/1‑149 (MQ=255)
                                                                                                                            aaaTAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAG‑TTTAAATT‑GCGCGCCAATCCGGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCGGTATTGACTa                   >  1:2533384/1‑149 (MQ=255)
                                                                                                                            aaaTAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAG‑TTTAAATT‑GCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCGGTATTGACTa                   >  1:4394313/1‑149 (MQ=255)
                                                                                                                            aaaTAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAG‑TTTAAATT‑GCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCGGTATTGACTa                   >  1:4394321/1‑149 (MQ=255)
                                                                                                                            aaaTAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAG‑TTTAAATT‑GCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCGGTATTGACTa                   <  2:115719/149‑1 (MQ=255)
                                                                                                                             aataatTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAG‑TTTAAATT‑GCGCGCCAATCATGGCTCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGTTAGAATTGCGGTATTGACTAt                  >  1:1583928/1‑149 (MQ=255)
                                                                                                                             aataatTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAG‑TTTAAATT‑GCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCGGTATTGACTAt                  >  1:1583993/1‑149 (MQ=255)
                                                                                                                              ataatTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAG‑TTTAAATT‑GCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCGGTATTGACTATc                 <  2:3619654/149‑1 (MQ=255)
                                                                                                                               taatTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAG‑TTTAAATT‑GCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCGGTATTGACTATCa                >  2:226788/1‑149 (MQ=255)
                                                                                                                                aatTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAG‑TTTAAATT‑GCGCGCCACTCATTGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCGGTATTGACTATCaa               >  1:3109664/1‑149 (MQ=255)
                                                                                                                                aatTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAG‑TTTAAATT‑GCGCGCCAATCATTGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCGGTATTGACTATCaa               >  1:3109753/1‑149 (MQ=255)
                                                                                                                                aatTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAG‑TTTAAATT‑GCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCGGTATTGACTATCaa               >  1:531276/1‑149 (MQ=255)
                                                                                                                                aatTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAG‑TTTAAATT‑GCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCGGTATTGACTATCaa               >  2:4967570/1‑149 (MQ=255)
                                                                                                                                aatTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAG‑TTTAAATT‑GCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCGGTATTGACTATCaa               <  1:3233208/149‑1 (MQ=255)
                                                                                                                                 atTCAAAGAAATCAAGACAATAGCGATTTAAAGCAATAAG‑TTTAAATT‑GCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCGGTATTGACTATCaaa              <  1:2915689/149‑1 (MQ=255)
                                                                                                                                 atTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAG‑TTTAAATT‑GCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCGGTATTGACTATCaaa              >  1:417308/1‑149 (MQ=255)
                                                                                                                                  ttCAAATAAATCAAGACAATAGCGATGTAAAGCACTAAT‑TTTAAATT‑GCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCGGTATTGACTATCAAAt             <  1:3566651/149‑1 (MQ=255)
                                                                                                                                  ttCAAATAAATCAAGACAATAGCGATGTAAAGCACTAAG‑TTTAAATT‑GCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCGGTATTGACTATCAAAt             <  1:5078723/149‑1 (MQ=255)
                                                                                                                                   tCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAG‑TTTAAATT‑GCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCGGTATTGACTATCAAATg            <  2:1329253/149‑1 (MQ=255)
                                                                                                                                    cAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAG‑TTTAAATT‑GCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCGGTATTGACTATCAAATGc           <  2:143951/149‑1 (MQ=255)
                                                                                                                                    cAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAG‑TTTAAATT‑GCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCGGTATTGACTATCAAATGc           >  1:2857814/1‑149 (MQ=255)
                                                                                                                                    cAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAG‑TTTAAATT‑GCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCGGTATTGACTATCAAATGc           >  2:3153180/1‑149 (MQ=255)
                                                                                                                                    cAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAG‑TTTAAATT‑GCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCGGTATTGACTATCAAATGc           >  2:2898807/1‑149 (MQ=255)
                                                                                                                                     aaaGAAATCAAGACAATAGCGATGTAAAGCACTAAG‑TTTAAATT‑GCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCGGTATTGACTATCAAATGcc          >  2:2882009/1‑149 (MQ=255)
                                                                                                                                      aaGAAATCAAGACAATAGCGATGTAAAGCACTAAG‑TTTAAATT‑GCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCGGTATTGACTCTCAAATGccc         >  2:2332584/1‑149 (MQ=255)
                                                                                                                                       aGAAATCAAGACAATAGCGATGTAAAGCACTAAG‑TTTAAATT‑GCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCGGTATTGACTATCAAATGCCCt        >  1:874905/1‑149 (MQ=255)
                                                                                                                                         aaaTCAAGACAATAGCGATGTAAAGCACTAAG‑TTTAAATT‑GCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCGGTATTGACTATCAAATGCCCTGa      <  2:3354878/149‑1 (MQ=255)
                                                                                                                                         aaaTCAAGACAATAGCGATGTAAAGCACTAAG‑TTTAAATT‑GCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCGGTATTGACTATCAAATGCCCTGa      <  2:3354872/149‑1 (MQ=255)
                                                                                                                                         aaaTCAAGACAATAGCGATGTAAAGCACTAAG‑TTTAAATT‑GCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCGGTATTGACTATCAAATGCCCTGa      >  1:1171317/1‑149 (MQ=255)
                                                                                                                                            tCAAGACAATAGCGATGTAAAGCACTAAG‑TTTAAATT‑GCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGAGACTATATCTCCTGATAGAATTGCGGTATTGACTATCAAATGCCCTGATTc   >  2:1576726/1‑149 (MQ=255)
                                                                                                                                             cAAGACAATAGCGATGTAAAGCACTAAG‑TTTAAATT‑GCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCGGTATTGACTATCAAATGCCCTGATTCg  <  1:2722995/149‑1 (MQ=255)
                                                                                                                                             |                                                                                                                                                      
GGAATATCTCAATTTTATGTGTCATTTTTCGGGGAAGGATATAGAGATTTAAGCAAGCATTTATTTGGAATGTATTTTTCGTTCGACCTTTGCTTATACATAACAGTCGTTTTTTTAATTTATAAAATAATTCAAAGAAATCAAGACAATAGCGATGTAAAGCACTAAG‑TTTAAATT‑GCGCGCCAATCATGGCGCGCACAAGCTATAATACCAACCTAATTTCTCCTCCTCTTAGAGTGACTATATCTCCTGATAGAATTGCGGTATTGACTATCAAATGCCCTGATTCG  >  CP009273/2463774‑2464063

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A