Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F60 I1 R1
|
18 |
145.0 |
4913530 |
99.1% |
4869308 |
138.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,815,883 |
+C |
coding (667/687 nt) |
rph ← |
truncated RNase PH |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,815,879 | 1 | . | C | 93.6%
| 270.8
/ 9.2
| 78 | coding (671/687 nt) | rph | truncated RNase PH |
| Reads supporting (aligned to +/- strand): ref base . (2/3); new base C (38/35); total (40/38) |
| Fisher's exact test for biased strand distribution p-value = 6.71e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.93e-01 |
CAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGA‑T‑T‑C‑C‑C‑C‑TCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTC > NC_000913/3815741‑3816012
|
cAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGTCTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGgattcga‑t‑t‑c < 1:2357839/140‑1 (MQ=255)
cAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGgattcga‑t‑t‑c < 1:425824/140‑1 (MQ=255)
cAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGgattcga‑t‑t‑c < 2:1715376/140‑1 (MQ=255)
cAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGgattcga‑t‑t‑c < 1:455725/140‑1 (MQ=255)
cAATAAACTGGCGCTAATATGGATTCATGCCTTCGCTACTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGgattcga‑t‑t‑c < 1:999271/140‑1 (MQ=255)
gcgcTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGA‑T‑TCC‑C‑C‑C‑TCGGGc < 1:363510/140‑1 (MQ=255)
gcgcTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGA‑T‑TCC‑C‑C‑C‑TCGGGc < 1:385303/140‑1 (MQ=255)
gcgcTGATATGGTTTCAAGCCTCCGCTCCTCGTATAACTCTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCATTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGA‑T‑TCC‑C‑C‑C‑TCGGGc < 2:1078376/140‑1 (MQ=255)
cTGATATGATTTCATGCGTTCGATCCTCATCTTACGTTTATACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGA‑T‑TCC‑C‑C‑C‑TCGGGCCag < 2:1087842/140‑1 (MQ=255)
gATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTGGCCTTAAAAATCAGTTTGCCAGCGCAGCATTCTGCGTCGCTACAATGGATTCGT‑T‑TCC‑C‑C‑C‑TCGGGCCagag > 1:501408/1‑140 (MQ=255)
atatGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGA‑T‑TCC‑C‑C‑C‑TCGGGCCAGAGc > 2:2272234/1‑140 (MQ=255)
tatGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGA‑T‑TCC‑C‑C‑C‑TCGGGCCAGAGcc < 1:1666507/140‑1 (MQ=255)
ggTTTCATGCCTTCGCTCCTCAACTTACTTTCCTATAGAAAAAAAAAAAGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGA‑T‑TCC‑C‑C‑C‑TCGGGCCAGAGCcaac < 2:1146006/140‑1 (MQ=255)
ttCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGA‑T‑TCC‑C‑C‑C‑TCGGGCCAGAGCCAACAAg < 1:2272234/140‑1 (MQ=255)
aTGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGG‑T‑T‑CTC‑C‑A‑TCGGGCCAGAGCCAACAAGATg > 1:1079481/1‑140 (MQ=255)
aTGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGA‑T‑TCC‑C‑C‑C‑TCGGGCCAGAGCCAACAAGATg > 1:1795851/1‑140 (MQ=255)
aTGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGA‑T‑TCC‑C‑C‑C‑TCGGGCCAGAGCCAACAAGATg > 2:225133/1‑140 (MQ=255)
aTGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAAGGGATTCGG‑T‑T‑C‑C‑C‑CATCGGGCCAGAGCCAACAAGATg > 1:1157466/1‑140 (MQ=255)
tGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGA‑T‑TCC‑C‑C‑C‑TCGGGCCAGAGCCAACAAGATGa > 1:1287914/1‑140 (MQ=255)
ccTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTAGCTACAATTGATTCGA‑T‑TCC‑C‑C‑C‑TCAGGCCAGAGCCAACTAGATGAGt > 2:1083533/1‑140 (MQ=255)
ttCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGA‑T‑TCC‑C‑C‑C‑TCGGGCCAGAGCCAACAAGATGAGTAg < 2:550728/140‑1 (MQ=255)
ttCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGA‑T‑TCC‑C‑C‑C‑TAGGACCAGAGGCAACAAGATGAGTAg > 1:915791/1‑140 (MQ=255)
cATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGA‑T‑TCC‑C‑C‑C‑TCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATg > 1:289455/1‑140 (MQ=255)
cTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGA‑T‑TCC‑C‑C‑C‑TCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGt > 1:2414291/1‑140 (MQ=255)
tACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGC‑T‑TCC‑C‑C‑C‑TTGGGGCAGGGCCAACAAAATGAGTAGCTCTTCATGGGTGa > 2:985416/1‑140 (MQ=255)
aCTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGA‑T‑TCC‑C‑C‑C‑TCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGaa < 1:1979219/140‑1 (MQ=255)
ttCTACAGTCAAAAAAAGGGCGGCTCATCAGTCGCCTTACAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGA‑T‑TCC‑C‑C‑C‑TCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGc < 2:1134164/140‑1 (MQ=255)
ttCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGA‑T‑TCC‑C‑C‑C‑TCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGc > 1:1276575/1‑140 (MQ=255)
cTACAGACCAAAAAAATCCGACCCATCAGTCACCTAAAAAATCAGTTTACCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGA‑T‑TCC‑C‑C‑C‑TCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTc < 2:1157466/140‑1 (MQ=255)
cAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGA‑T‑TCC‑C‑C‑C‑TCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGcc < 2:486429/140‑1 (MQ=255)
aCAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGA‑T‑TCC‑C‑C‑C‑TCGGGCCAGAGCCAGCAAGATGCGTAGCTCTTCATGAGTGAACGGCTCGCCTTc > 2:967481/1‑140 (MQ=255)
aaaaaaaaGGCGACTCATCAGTGGCCTTAAAGATCCGTTTGCCAGCGCGGCCTTCTGCGTCGCTACAATGGATTCGA‑T‑TCC‑C‑C‑C‑TCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTg < 2:915791/140‑1 (MQ=255)
aaaaaaaaGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGA‑T‑TCC‑C‑C‑C‑TCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTg < 2:1276575/140‑1 (MQ=255)
aaaaaaaaGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGA‑T‑TCC‑C‑C‑C‑TCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTg > 2:1995443/1‑140 (MQ=255)
aaaaaaGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGA‑T‑TCC‑C‑C‑C‑TCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGcc > 1:2031913/1‑140 (MQ=255)
aaaaaaGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGA‑T‑TCC‑C‑C‑C‑TCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGcc < 2:1608141/140‑1 (MQ=255)
aGGCGACTCATCAGTCGCCTTAGAAATCAGTTTGCTAGCGCCGCCTTCGGCGTCGCTACAATGGATTCGA‑T‑TCC‑C‑C‑C‑TCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTccc < 2:1079481/140‑1 (MQ=255)
aGGCGACTCATCAGTCGACTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGA‑T‑TCC‑C‑C‑C‑TCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTccc < 1:599732/140‑1 (MQ=255)
ggCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGA‑T‑TCC‑C‑C‑C‑TCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTcccc > 2:1302201/1‑140 (MQ=255)
ggCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGA‑T‑TCC‑C‑C‑C‑TCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTcccc > 1:2338215/1‑140 (MQ=255)
cGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGA‑T‑TCC‑C‑C‑C‑TCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTg > 2:1691343/1‑140 (MQ=255)
gACTCATCAGTCGCCTTAAAAATCACTTTCCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGA‑T‑TCC‑C‑C‑C‑TCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGc < 1:724937/140‑1 (MQ=255)
aCTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGA‑T‑TCC‑C‑C‑C‑TCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCa > 2:171253/1‑140 (MQ=255)
catcaGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGA‑T‑TCC‑C‑C‑C‑TCGGGTCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACtt > 2:481287/1‑140 (MQ=255)
aGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGA‑T‑TCC‑C‑C‑C‑TCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAat > 1:153101/1‑140 (MQ=255)
cGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGA‑T‑TCC‑C‑C‑C‑TCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAatgat < 1:495102/140‑1 (MQ=255)
cGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGA‑T‑TCC‑C‑C‑C‑TCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAatgat < 2:2057749/140‑1 (MQ=255)
gCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGA‑T‑TCC‑C‑C‑C‑TCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAGCGGCTCGGCTTCTGGCGTCCCGTGCACTTCAatgatg > 1:631878/1‑140 (MQ=255)
ccTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGA‑T‑TCC‑C‑C‑C‑TCGGGCCAGAGCCAACAAGGTGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATgc > 1:1000030/1‑140 (MQ=255)
ttAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGA‑T‑TCC‑C‑C‑C‑TCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATgcgc > 2:1770943/1‑140 (MQ=255)
ttAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGA‑T‑TCC‑C‑C‑C‑TCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATgcgc > 1:1276530/1‑140 (MQ=255)
tAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGA‑T‑TCC‑C‑C‑C‑TCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGcc < 1:1770943/140‑1 (MQ=255)
aaaaaTCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGA‑T‑TCC‑C‑C‑C‑TCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGccc > 1:550277/1‑140 (MQ=255)
aTCAGTTTGCCAGCGTCGCCTTCTGGGTCGCTACAATTGATTCGA‑T‑TCC‑C‑C‑C‑TCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGGACTTCAATGATGCGCCCGTCt < 1:979819/140‑1 (MQ=255)
aTCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGA‑T‑TCC‑C‑C‑C‑TCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCt < 2:1287914/140‑1 (MQ=255)
aTCAGTTTGCCAGCGCCACCTTCTGCGTCGCCACACTGGCTTCGA‑T‑TCC‑C‑C‑C‑TCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCt < 2:678344/140‑1 (MQ=255)
tCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGA‑T‑TCC‑C‑C‑C‑TCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCtt < 1:171253/140‑1 (MQ=255)
aGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGA‑T‑TCC‑C‑C‑C‑TCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTTTGCCGTCGCCTACAGTTCAATGATGCGCCCGTCTTCg > 1:678344/1‑140 (MQ=255)
aGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGA‑T‑TCC‑C‑C‑C‑TCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCg > 1:1761727/1‑140 (MQ=255)
tttGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGA‑T‑TCC‑C‑C‑C‑TCGGGCCAGAGCCAACAAGATGAGTAGCTGTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGt < 2:501408/140‑1 (MQ=255)
tttGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGA‑T‑TCC‑C‑C‑C‑TCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGt < 2:2031913/140‑1 (MQ=255)
agacaggcgcCGCCTTCCGCGTCGCTACAATCGATCCGA‑T‑TCC‑C‑C‑C‑TCCGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGtc < 2:798733/134‑1 (MQ=255)
tGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGA‑T‑TCC‑C‑C‑C‑TCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGtca < 2:153101/140‑1 (MQ=255)
tGCCAGCGCCGCCTTCTCCGTCCCTACAATGCATTCGA‑TCC‑C‑C‑C‑C‑TCGTGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGtca < 2:631878/140‑1 (MQ=255)
gCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGACT‑C‑C‑C‑C‑C‑TCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGtcat < 1:1083533/140‑1 (MQ=255)
gCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGA‑T‑TCC‑C‑C‑C‑TCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGtcat < 2:1761727/140‑1 (MQ=255)
aGCGCCGCCTTCTGCGTCGCTACAATGGATTCGA‑T‑TCC‑C‑C‑C‑TCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCAc < 2:289455/140‑1 (MQ=255)
gcgcCGCCTTCTGCGTCGCTACAATGGATTCGA‑T‑TCC‑C‑C‑C‑TCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACt < 2:2414291/140‑1 (MQ=255)
cgccgcCTTCTGCGTCGCTACAATGGATTCGA‑T‑TCC‑C‑C‑C‑TCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTa > 1:602952/1‑140 (MQ=255)
ccgccTTCTGCGTCGCTACAATGGATTCGA‑T‑TCC‑C‑C‑C‑TCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACg > 1:263205/1‑140 (MQ=255)
ccTTCTGCGTCGCTACAATGGATTCGA‑T‑TCC‑C‑C‑C‑TCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGtcatca > 1:1754997/1‑132 (MQ=255)
ccTTCTGCGTCGCTACAATGGATTCGA‑T‑TCC‑C‑C‑C‑TCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGtcatca < 2:1754997/132‑1 (MQ=255)
ccTTCTGCGTCGCTACAATGGATTCGA‑T‑TCC‑C‑C‑C‑TCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTc > 1:1504547/1‑140 (MQ=255)
ccTTCTGCGTCGCTACAATGGATTCGA‑T‑TCC‑C‑C‑C‑TCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTc < 2:263205/140‑1 (MQ=255)
tGCGTCGCTACAATGGATTCGA‑T‑TCC‑C‑C‑C‑TCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAGTGATGCGCCCGTCTTCGGTCATCACTACGTTctgtct > 1:798733/1‑135 (MQ=255)
gCGTCGCTACAATGGGTTCGA‑T‑T‑C‑CTC‑C‑TGGGGCCAGGGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCg < 1:878335/140‑1 (MQ=255)
gCGTCGCTACAATGGATTCGA‑T‑TCC‑C‑C‑C‑TCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCg < 2:1795851/140‑1 (MQ=255)
gTCGCTACAATGGATTCGA‑T‑TCC‑C‑C‑C‑TCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGGTGCGCCCGTCTTCGATCATCAGTACGTTCATGTCGGt > 1:955987/1‑140 (MQ=255)
gTCGCTACAATGGATTCGA‑T‑TCC‑C‑C‑C‑TCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGt > 1:453668/1‑140 (MQ=255)
cGCTACAATGGATTCGA‑T‑TCC‑C‑C‑C‑TCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGtct > 1:2389687/1‑140 (MQ=255)
acagaCAATGGATTCTA‑T‑T‑C‑C‑CTC‑TCGGGCCAGAGCCTACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGtct < 1:971730/136‑1 (MQ=255)
gCTACAATGGATTCGA‑T‑TCC‑C‑C‑C‑TCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGtctc > 1:149004/1‑140 (MQ=255)
gCTACAATGGATTCGA‑T‑TCC‑C‑C‑C‑TCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCAATTCAATGAAGCGCCCGGCTTCGGTCATCACCACGTTCATGTCGGtctc > 2:878335/1‑140 (MQ=255)
tACAATGGATTCGA‑T‑TCC‑C‑C‑C‑TCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTg > 2:1918212/1‑140 (MQ=255)
ggATTCGA‑T‑TCC‑C‑C‑C‑TCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCag < 2:1234296/140‑1 (MQ=255)
gattcga‑t‑tcC‑C‑C‑C‑TCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCg < 1:1605317/126‑1 (MQ=255)
gattcga‑t‑tcC‑C‑C‑C‑TCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCg > 2:1605317/1‑126 (MQ=255)
gattcga‑t‑tcC‑C‑C‑C‑TCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCaga < 2:1276530/140‑1 (MQ=255)
gattcga‑t‑tcC‑C‑C‑C‑TAGGGCCATAGGCAATAAGATGATTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCaga < 1:771176/140‑1 (MQ=255)
tcga‑t‑tcC‑C‑C‑C‑TCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTc > 2:610954/1‑140 (MQ=255)
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CAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGA‑T‑T‑C‑C‑C‑C‑TCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTC > NC_000913/3815741‑3816012
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
