Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A9 F60 I1 R1 14 122.5 4201364 99.0% 4159350 139.2

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,815,883 +C coding (667/687 nt) rph ← truncated RNase PH

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,815,8791.C94.6% 329.1 / 8.6 93coding (671/687 nt)rphtruncated RNase PH
Reads supporting (aligned to +/- strand):  ref base . (3/2);  new base C (34/53);  total (38/55)
Fisher's exact test for biased strand distribution p-value = 3.88e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 104 total aligned reads displayed.

AAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATT‑C‑C‑C‑C‑TCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCT  >  NC_000913/3815745‑3816013
                                                                                                                                       |                                                                                                                                          
aaaCTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATT‑c‑c‑c‑cc                                                                                                                                    <  1:1756691/140‑2 (MQ=255)
 aaCTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATT‑c‑c‑c‑cct                                                                                                                                   <  1:36008/140‑3 (MQ=255)
   cTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTATGCCAGCGACGCATTCCACGTCGCTACAATAGATTCGATA‑c‑c‑c‑cctcg                                                                                                                                 >  2:1002722/1‑136 (MQ=255)
     ggCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCGACAATGGATCCGATTCC‑C‑C‑C‑TCggg                                                                                                                               >  1:780007/1‑140 (MQ=255)
      gcgcTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTTGATTCC‑C‑C‑C‑TCGGGc                                                                                                                              <  2:2004155/140‑1 (MQ=255)
      gcgcTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCC‑C‑C‑C‑TCGGGc                                                                                                                              <  2:1782078/140‑1 (MQ=255)
      gcgcTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCC‑C‑C‑C‑TCGGGc                                                                                                                              <  2:1157468/140‑1 (MQ=255)
       cgcTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGgattcgatt‑c                                                                                                                                           <  2:1706313/129‑1 (MQ=255)
       cgcTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGgattcgatt‑c                                                                                                                                           >  1:1706313/1‑129 (MQ=255)
       cgcTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCC‑C‑C‑C‑TCGGGcc                                                                                                                             >  1:1854454/1‑140 (MQ=255)
       cgcTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCC‑C‑C‑C‑TCGGGcc                                                                                                                             >  1:1585419/1‑140 (MQ=255)
         cTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCC‑C‑C‑C‑TCGGGCCag                                                                                                                           >  2:1207740/1‑140 (MQ=255)
          tGATATGGTTTCATGCCATCGCACCTCATCTTACTTTTCAACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCC‑C‑C‑C‑TCGGGCCaga                                                                                                                          <  2:829033/140‑1 (MQ=255)
           gATATGGTTTCATGCGTTCGCTCCTGATCTTACTTTTCTACAGACAAAAAAAAGGCGACGCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCC‑C‑C‑C‑TCGGGCCagag                                                                                                                         <  1:896238/140‑1 (MQ=255)
           gATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGGGTCGCTAGAATTGAATCGATTGC‑C‑C‑C‑TCGGGCCagag                                                                                                                         >  1:582415/1‑140 (MQ=255)
           gATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCC‑C‑C‑C‑TCGGGCCagag                                                                                                                         <  2:409810/140‑1 (MQ=255)
            atatGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCC‑C‑C‑C‑TCGGGCCAGAGc                                                                                                                        >  1:1187427/1‑140 (MQ=255)
            atatGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCC‑C‑C‑C‑TCGGGCCAGAGc                                                                                                                        >  2:1892726/1‑140 (MQ=255)
             tatGGTTTCATGCCTTCGCTCCTTATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCC‑C‑C‑C‑TCGGGCCAGAGcc                                                                                                                       <  2:1187427/140‑1 (MQ=255)
             tatGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCC‑C‑C‑C‑TCGGGCCAGAGcc                                                                                                                       <  1:1207740/140‑1 (MQ=255)
              atGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCC‑C‑C‑C‑TCGGGCCAGAGCca                                                                                                                      <  1:1892726/140‑1 (MQ=255)
                ggTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCC‑C‑C‑C‑TCGGGCCAGAGCcaac                                                                                                                    >  2:1683682/1‑140 (MQ=255)
                   ttCATGCCTTCGCTCTTCATCTGACCTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCC‑C‑C‑C‑TCGGGCCAGAGCCAACAAg                                                                                                                 <  1:734707/140‑1 (MQ=255)
                   ttCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCC‑C‑C‑C‑TCGGGCCAGAGCCAACAAg                                                                                                                 <  2:2055604/140‑1 (MQ=255)
                   ttCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCC‑C‑C‑C‑TCGGGCCAGAGCCAACAAg                                                                                                                 <  2:468618/140‑1 (MQ=255)
                    tCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCC‑C‑C‑C‑TCGGGCCAGAGCCAACAAGa                                                                                                                >  1:1283690/1‑140 (MQ=255)
                      aTGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGTGTCGCTACTATGGATTTGATT‑C‑C‑C‑CATCGGTCCAGAGCCAACAAGATg                                                                                                              >  2:578921/1‑140 (MQ=255)
                      aTGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGGGTCGCTACAATGGATTGGATT‑C‑C‑C‑CATCGGACCAGAGCCAACAAGATg                                                                                                              >  2:592747/1‑140 (MQ=255)
                      aTGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCC‑C‑C‑C‑TCGGGCCAGAGCcaa                                                                                                                     >  1:2085797/1‑133 (MQ=255)
                      aTGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCC‑C‑C‑C‑TCGGGCCAGAGCcaa                                                                                                                     <  2:2085797/133‑1 (MQ=255)
                      aTGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCC‑C‑C‑C‑TCGGGCCAGAGCCAACAAGATg                                                                                                              >  1:1686837/1‑140 (MQ=255)
                      aTGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCC‑C‑C‑C‑TCGGGCCAGAGCCAACAAGATg                                                                                                              >  2:1915130/1‑140 (MQ=255)
                      aTGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCC‑C‑C‑C‑TCGGGCCAGAGCCAACAAGATg                                                                                                              >  2:1641442/1‑140 (MQ=255)
                       tGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATAGATTCGAGT‑C‑CGC‑C‑TCGGGCCAGAGCCAACAAGATGa                                                                                                             >  1:559631/1‑140 (MQ=255)
                       tGCCTTCGCTCCTCATCGTACTTTTCTACAGACAAAAAAGAGGCGACTGATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCC‑C‑C‑C‑TCGGGCCAGAGCCAACAAGATGa                                                                                                             <  2:888632/140‑1 (MQ=255)
                        gCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCC‑C‑C‑C‑TCGGGCCAGAGCCAACAAGATGAg                                                                                                            <  1:25595/140‑1 (MQ=255)
                           ttCGCTCCTCATCTTACTTTTCTACAGACAACAAACAGGAGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCC‑C‑C‑C‑TCGGGCCAGAGCCAACAAGATGAGTAg                                                                                                         <  2:668668/140‑1 (MQ=255)
                           ttCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCC‑C‑C‑C‑TCGGGCCAGAGCCAACAAGATGAGTAg                                                                                                         <  1:144399/140‑1 (MQ=255)
                           ttCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCC‑C‑C‑C‑TCGGGCCAGAGCCAACAAGATGAGTAg                                                                                                         <  1:1641442/140‑1 (MQ=255)
                           ttCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCC‑C‑C‑C‑TCGGGCCAGAGCCAACAAGATGAGTAg                                                                                                         <  1:1912109/140‑1 (MQ=255)
                           ttCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCC‑C‑C‑C‑TCGGGCCAGAGCCAACAAGATGAGTAg                                                                                                         <  2:1739593/140‑1 (MQ=255)
                           ttCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCC‑C‑C‑C‑TCGGGCCAGAGCCAACAAGATGAGTAg                                                                                                         <  1:451662/140‑1 (MQ=255)
                            tCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCC‑C‑C‑C‑TCGGGCCAGAGCCAACAAGATGAGTAGc                                                                                                        >  1:1147896/1‑140 (MQ=255)
                            tCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGAGTCGGTT‑CGC‑C‑C‑TCGGGCCAGAGCCAACAAGATGAGTAGc                                                                                                        >  2:783113/1‑140 (MQ=255)
                             cGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCC‑C‑C‑C‑TCGGGCCAGAGCCAACAAGATGAGTAGct                                                                                                       <  1:1683682/140‑1 (MQ=255)
                             cGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCC‑C‑C‑C‑TCGGGCCAGAGCCAACAAGATGAGTAGct                                                                                                       <  2:1283690/140‑1 (MQ=255)
                                tcctcATCTTACTTTTCTACAGCCACAAACAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCC‑C‑C‑C‑TCGGGCCAGAGCCAACAAGATGAGTAGCTCtt                                                                                                    <  1:535505/140‑1 (MQ=255)
                                  ctcATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCC‑C‑C‑C‑TCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCa                                                                                                  <  1:1076634/140‑1 (MQ=255)
                                        ttACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCC‑C‑C‑C‑TCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTg                                                                                            <  2:1147896/140‑1 (MQ=255)
                                            ttttCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCC‑C‑C‑C‑TCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACg                                                                                        >  2:1276294/1‑140 (MQ=255)
                                              ttCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGTGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCC‑C‑C‑C‑TCGGGCGAGAACCACCAAGATGATTAGCCCTTCATTGGTGAACGGc                                                                                      >  2:718816/1‑140 (MQ=255)
                                              ttCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCC‑C‑C‑C‑TCGGGCCAAAGCCAACCAGAAGACTAGCTCTTCATGGGTGAACGGc                                                                                      >  1:778802/1‑140 (MQ=255)
                                               tCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCC‑C‑C‑C‑TCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCt                                                                                     >  2:705732/1‑140 (MQ=255)
                                               tCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCC‑C‑C‑C‑TCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCt                                                                                     >  2:1117710/1‑140 (MQ=255)
                                                 tACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCC‑C‑C‑C‑TCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCg                                                                                   >  1:418722/1‑140 (MQ=255)
                                                   cAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCC‑C‑C‑C‑TCGGGCCAGAGTCAAGACGGTGAGTAGCGCTTCTAGGGTGAAGGGCTCGcc                                                                                 >  2:1023953/1‑140 (MQ=255)
                                                   cAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCC‑C‑C‑C‑TCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGcc                                                                                 <  1:85341/140‑1 (MQ=255)
                                                   cAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCC‑C‑C‑C‑TCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGcc                                                                                 <  2:1585419/140‑1 (MQ=255)
                                                     gACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCC‑C‑C‑C‑TCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCtt                                                                               <  1:424059/140‑1 (MQ=255)
                                                        aaaaaaaaGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATT‑C‑CAC‑C‑TCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTg                                                                            >  2:105529/1‑140 (MQ=255)
                                                          aaaaaaGGCGCCTCATCAGTCGTCTTAAATATCAGTTGGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCC‑C‑C‑C‑TCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGcc                                                                          <  1:783113/140‑1 (MQ=255)
                                                          aaaaaaGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCC‑C‑C‑C‑TCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGcc                                                                          >  1:188882/1‑140 (MQ=255)
                                                          aaaaaaGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCC‑C‑C‑C‑TCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGcc                                                                          <  2:1854454/140‑1 (MQ=255)
                                                          aaaaaaGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCC‑C‑C‑C‑TCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGcc                                                                          >  2:270000/1‑140 (MQ=255)
                                                          aaaaaaGGCAACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCC‑C‑C‑C‑TCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGcc                                                                          <  2:1646783/140‑1 (MQ=255)
                                                               aGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCC‑C‑C‑C‑TCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTccc                                                                     <  1:1270393/140‑1 (MQ=255)
                                                               aGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCC‑C‑C‑C‑TCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTccc                                                                     <  1:1132610/140‑1 (MQ=255)
                                                                ggCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCC‑C‑C‑C‑TCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTcccc                                                                    >  1:1243899/1‑140 (MQ=255)
                                                                  cGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCC‑C‑C‑C‑TCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTg                                                                  <  2:391008/140‑1 (MQ=255)
                                                                    aCTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCC‑C‑C‑C‑TCGGGCCAGAGCCAACAAGATGAGTAGCTCCTCATGGGCGAAAGGCTCGCCTCCTGCCGTCCCCTGCa                                                                >  1:804792/1‑140 (MQ=255)
                                                                             tCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCC‑C‑C‑C‑TCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAatga                                                       <  1:705732/140‑1 (MQ=255)
                                                                               gCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCC‑C‑C‑C‑TCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAGCGGCTCGTCTTCTGTCGTCCCATGCACTTCAatgatg                                                     >  1:651740/1‑140 (MQ=255)
                                                                               gCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCC‑C‑C‑C‑TCGGGCCAGAGCCAACAAGATGAGTAGCTCTACATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAatgatg                                                     >  1:2011261/1‑140 (MQ=255)
                                                                                ccTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCC‑C‑C‑C‑TCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATgc                                                    >  1:1041704/1‑140 (MQ=255)
                                                                                ccTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCC‑C‑C‑C‑TCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATgc                                                    >  1:2099059/1‑140 (MQ=255)
                                                                                ccTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCC‑C‑C‑C‑TCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATgc                                                    >  1:186413/1‑140 (MQ=255)
                                                                                 cTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCC‑C‑C‑C‑TCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATgcg                                                   <  1:296117/140‑1 (MQ=255)
                                                                                  ttAAAAATCAGTTTGCCGGCGCCGCCTTCTGTGTCCCTATAATGGATTGGATTCC‑C‑C‑C‑TCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATgcgc                                                  <  2:836916/140‑1 (MQ=255)
                                                                                  ttAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCC‑C‑C‑C‑TCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATgcgc                                                  >  2:23710/1‑140 (MQ=255)
                                                                                  ttAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATT‑C‑CAC‑C‑TCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATgcgc                                                  <  1:105529/140‑1 (MQ=255)
                                                                                    aaaaaTCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCC‑C‑C‑C‑TCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATCGGTGAACGGCTCACCTTCTGCCGTCACCTGGACTTCAATGATGCGccc                                                >  2:879214/1‑140 (MQ=255)
                                                                                        aTCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCC‑C‑C‑C‑TCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCt                                            <  1:1117710/140‑1 (MQ=255)
                                                                                        aTCAGTTTGCCAGCGCCGCCTTATGCGTCGCCACAGTGGGTTCGATTCC‑C‑C‑C‑TCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCt                                            <  2:663497/140‑1 (MQ=255)
                                                                                           aGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCC‑C‑C‑C‑TCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCTCCTCCACTTCAATAATGCGCCCGTCTTCg                                         >  1:836916/1‑140 (MQ=255)
                                                                                            gTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCC‑C‑C‑C‑TCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCgg                                        <  2:469334/140‑1 (MQ=255)
                                                                                            gTTTGCCAGCGCCGCCTTCTGCCTCGCTACAATGGTTTCCATTCC‑C‑C‑C‑TCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGTCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCgg                                        <  2:780007/140‑1 (MQ=255)
                                                                                             tttGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCC‑C‑C‑C‑TCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGt                                       <  2:188882/140‑1 (MQ=255)
                                                                                               tGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCC‑C‑C‑C‑TCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGtca                                     <  2:186413/140‑1 (MQ=255)
                                                                                                  cAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCC‑C‑C‑C‑TCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGtcatca                                  <  1:270000/140‑1 (MQ=255)
                                                                                                   aGCGCCGCCTTCTGCGTTGCTAAAATGGATTGGATG‑C‑C‑CTC‑TCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCAc                                 <  2:804792/140‑1 (MQ=255)
                                                                                                    gcgcCGCCTTCTGCGTCGCTACAATGGATTCGATTCC‑C‑C‑C‑TCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACt                                <  1:451515/140‑1 (MQ=255)
                                                                                                          ccTTCTGCGTCGCTACAATGGATTCGATTCC‑C‑C‑C‑TCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCGGTCCCCTGAACTTCAAGGATGCGCCCGTCTCCGGTCATCACTACGTTc                          >  2:879386/1‑140 (MQ=255)
                                                                                                             tCTGCGTCGCTACAACGGATTCTATC‑C‑C‑CTC‑TCGGGCTAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATg                       <  1:592747/140‑1 (MQ=255)
                                                                                                                       tACAATGGATTCGATTCC‑C‑C‑C‑TCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTg             <  2:1686837/140‑1 (MQ=255)
                                                                                                                       tACAATGGATTCGATTCC‑C‑C‑C‑TCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGCCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTg             <  1:1281886/140‑1 (MQ=255)
                                                                                                                         cAATGGATTCGATTCC‑C‑C‑C‑TCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCg           <  2:1041704/140‑1 (MQ=255)
                                                                                                                           aTGGATTCGATTCC‑C‑C‑C‑GCGGGCCAGAGCCAACAATATGCGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGc         <  2:651740/140‑1 (MQ=255)
                                                                                                                            tGGATTCGATTCC‑C‑C‑C‑TCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCTCTACGTTCATGTCGGTCTCTGCGGCa        <  2:1243899/140‑1 (MQ=255)
                                                                                                                              gattcgattcC‑C‑C‑C‑TCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTACGGTCATCACTGCGATCATGTAGGTCTCTGCGGCaga      >  1:966536/1‑140 (MQ=255)
                                                                                                                                  cgattcC‑C‑C‑C‑TCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCt  <  1:1908402/140‑1 (MQ=255)
                                                                                                                                       |                                                                                                                                          
AAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATT‑C‑C‑C‑C‑TCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCT  >  NC_000913/3815745‑3816013

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A